Multiple sequence alignment - TraesCS7D01G475000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G475000 chr7D 100.000 4268 0 0 1 4268 587101433 587105700 0.000000e+00 7882.0
1 TraesCS7D01G475000 chr7D 79.843 382 43 19 252 608 92805524 92805896 9.160000e-62 248.0
2 TraesCS7D01G475000 chr7D 82.301 113 18 2 501 612 576172184 576172073 3.510000e-16 97.1
3 TraesCS7D01G475000 chr7A 95.081 3253 144 10 877 4128 678953309 678956546 0.000000e+00 5107.0
4 TraesCS7D01G475000 chr7A 82.993 294 28 15 608 886 678951121 678951407 3.300000e-61 246.0
5 TraesCS7D01G475000 chr7A 85.903 227 24 5 277 500 50132384 50132163 7.130000e-58 235.0
6 TraesCS7D01G475000 chr7A 86.758 219 10 5 18 229 678950923 678951129 4.290000e-55 226.0
7 TraesCS7D01G475000 chr7A 93.220 59 2 1 3392 3448 664379008 664379066 7.600000e-13 86.1
8 TraesCS7D01G475000 chr7B 90.853 2777 169 40 817 3554 658173421 658176151 0.000000e+00 3642.0
9 TraesCS7D01G475000 chr7B 92.282 907 57 6 969 1871 658139326 658140223 0.000000e+00 1275.0
10 TraesCS7D01G475000 chr7B 85.714 203 16 8 624 815 658173187 658173387 7.240000e-48 202.0
11 TraesCS7D01G475000 chr7B 80.078 256 36 11 252 501 569426442 569426688 4.390000e-40 176.0
12 TraesCS7D01G475000 chr7B 81.651 218 22 13 21 229 658172262 658172470 9.490000e-37 165.0
13 TraesCS7D01G475000 chr7B 95.890 73 3 0 743 815 658131262 658131334 7.500000e-23 119.0
14 TraesCS7D01G475000 chr7B 84.259 108 12 3 501 608 87188287 87188389 2.720000e-17 100.0
15 TraesCS7D01G475000 chr7B 97.059 34 1 0 817 850 658131368 658131401 1.660000e-04 58.4
16 TraesCS7D01G475000 chr1D 85.749 2456 286 28 820 3241 366873700 366876125 0.000000e+00 2538.0
17 TraesCS7D01G475000 chr1D 79.793 386 43 17 250 608 486015962 486015585 9.160000e-62 248.0
18 TraesCS7D01G475000 chr1D 79.819 332 51 10 277 604 307406611 307406930 1.190000e-55 228.0
19 TraesCS7D01G475000 chr1D 84.545 110 15 2 501 609 367432856 367432964 1.620000e-19 108.0
20 TraesCS7D01G475000 chr1D 92.308 39 3 0 777 815 366873550 366873588 5.960000e-04 56.5
21 TraesCS7D01G475000 chr1A 86.029 2362 279 25 899 3241 465343443 465341114 0.000000e+00 2486.0
22 TraesCS7D01G475000 chr1A 81.762 647 104 11 2099 2740 465340726 465340089 2.920000e-146 529.0
23 TraesCS7D01G475000 chr1A 80.196 510 69 15 3354 3845 583533782 583533287 1.890000e-93 353.0
24 TraesCS7D01G475000 chr1A 82.353 255 33 9 1170 1420 465344607 465344361 1.200000e-50 211.0
25 TraesCS7D01G475000 chr1A 92.000 50 4 0 235 284 564400413 564400364 2.130000e-08 71.3
26 TraesCS7D01G475000 chr1A 96.875 32 1 0 777 808 465343679 465343648 2.000000e-03 54.7
27 TraesCS7D01G475000 chr1B 85.552 2374 283 29 899 3250 490723071 490720736 0.000000e+00 2429.0
28 TraesCS7D01G475000 chr1B 86.027 1095 124 20 992 2078 490446546 490447619 0.000000e+00 1147.0
29 TraesCS7D01G475000 chr1B 78.509 228 33 13 1200 1420 490724217 490723999 7.440000e-28 135.0
30 TraesCS7D01G475000 chr1B 92.308 39 3 0 777 815 490723318 490723280 5.960000e-04 56.5
31 TraesCS7D01G475000 chr4D 79.618 785 115 20 3354 4110 307239663 307240430 4.890000e-144 521.0
32 TraesCS7D01G475000 chr4D 82.677 127 22 0 2566 2692 50642875 50643001 3.490000e-21 113.0
33 TraesCS7D01G475000 chr5A 82.075 530 87 6 3562 4083 471402373 471401844 3.030000e-121 446.0
34 TraesCS7D01G475000 chr2B 81.122 392 66 6 3562 3946 518512997 518513387 1.490000e-79 307.0
35 TraesCS7D01G475000 chr2B 76.731 361 53 15 275 610 120240716 120241070 5.670000e-39 172.0
36 TraesCS7D01G475000 chr6B 77.419 496 83 10 3583 4065 479399130 479398651 7.030000e-68 268.0
37 TraesCS7D01G475000 chr6B 85.455 110 14 2 501 609 29328608 29328716 3.490000e-21 113.0
38 TraesCS7D01G475000 chrUn 87.225 227 21 5 277 500 280421871 280421650 7.080000e-63 252.0
39 TraesCS7D01G475000 chrUn 87.225 227 21 5 277 500 280428884 280428663 7.080000e-63 252.0
40 TraesCS7D01G475000 chrUn 87.225 227 21 5 277 500 333169781 333170002 7.080000e-63 252.0
41 TraesCS7D01G475000 chr2D 82.131 291 44 5 3561 3843 542523740 542524030 4.260000e-60 243.0
42 TraesCS7D01G475000 chr6A 78.446 399 55 19 236 610 23379107 23378716 9.230000e-57 231.0
43 TraesCS7D01G475000 chr6A 76.846 298 45 14 314 609 603371710 603371985 3.440000e-31 147.0
44 TraesCS7D01G475000 chr3A 85.463 227 23 7 278 501 673718351 673718570 1.190000e-55 228.0
45 TraesCS7D01G475000 chr3A 79.586 338 47 13 284 608 714117001 714117329 5.550000e-54 222.0
46 TraesCS7D01G475000 chr3A 84.821 224 27 5 277 498 692112724 692112942 7.190000e-53 219.0
47 TraesCS7D01G475000 chr3A 82.171 129 17 4 235 361 95471968 95472092 5.840000e-19 106.0
48 TraesCS7D01G475000 chr6D 87.432 183 22 1 3765 3946 341076499 341076681 4.320000e-50 209.0
49 TraesCS7D01G475000 chr3D 79.693 261 45 5 243 500 584475077 584474822 9.430000e-42 182.0
50 TraesCS7D01G475000 chr3D 81.223 229 20 13 382 608 590095052 590094845 3.410000e-36 163.0
51 TraesCS7D01G475000 chr4B 83.465 127 21 0 2566 2692 74442814 74442940 7.500000e-23 119.0
52 TraesCS7D01G475000 chr4A 83.465 127 21 0 2566 2692 546297261 546297135 7.500000e-23 119.0
53 TraesCS7D01G475000 chr5D 75.111 225 44 12 1628 1846 473117098 473116880 1.260000e-15 95.3
54 TraesCS7D01G475000 chr5D 79.851 134 16 7 4002 4132 344989763 344989888 2.110000e-13 87.9
55 TraesCS7D01G475000 chr5B 71.520 467 93 34 1403 1846 580515070 580514621 5.880000e-14 89.8
56 TraesCS7D01G475000 chr3B 92.157 51 4 0 234 284 392978833 392978783 5.920000e-09 73.1
57 TraesCS7D01G475000 chr2A 93.750 48 3 0 235 282 686837747 686837794 5.920000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G475000 chr7D 587101433 587105700 4267 False 7882.000000 7882 100.000000 1 4268 1 chr7D.!!$F2 4267
1 TraesCS7D01G475000 chr7A 678950923 678956546 5623 False 1859.666667 5107 88.277333 18 4128 3 chr7A.!!$F2 4110
2 TraesCS7D01G475000 chr7B 658172262 658176151 3889 False 1336.333333 3642 86.072667 21 3554 3 chr7B.!!$F5 3533
3 TraesCS7D01G475000 chr7B 658139326 658140223 897 False 1275.000000 1275 92.282000 969 1871 1 chr7B.!!$F3 902
4 TraesCS7D01G475000 chr1D 366873550 366876125 2575 False 1297.250000 2538 89.028500 777 3241 2 chr1D.!!$F3 2464
5 TraesCS7D01G475000 chr1A 465340089 465344607 4518 True 820.175000 2486 86.754750 777 3241 4 chr1A.!!$R3 2464
6 TraesCS7D01G475000 chr1B 490446546 490447619 1073 False 1147.000000 1147 86.027000 992 2078 1 chr1B.!!$F1 1086
7 TraesCS7D01G475000 chr1B 490720736 490724217 3481 True 873.500000 2429 85.456333 777 3250 3 chr1B.!!$R1 2473
8 TraesCS7D01G475000 chr4D 307239663 307240430 767 False 521.000000 521 79.618000 3354 4110 1 chr4D.!!$F2 756
9 TraesCS7D01G475000 chr5A 471401844 471402373 529 True 446.000000 446 82.075000 3562 4083 1 chr5A.!!$R1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 374 0.105039 GCCAAGGTCCCTGACGATAG 59.895 60.000 0.00 0.0 46.19 2.08 F
487 508 0.107993 GTAGGGGTGTTTCCTACCGC 60.108 60.000 8.64 0.0 46.75 5.68 F
535 556 0.179000 CAGTAGCGAAAGGGCCAGAT 59.821 55.000 6.18 0.0 0.00 2.90 F
536 557 0.466124 AGTAGCGAAAGGGCCAGATC 59.534 55.000 6.18 0.0 0.00 2.75 F
537 558 0.533085 GTAGCGAAAGGGCCAGATCC 60.533 60.000 6.18 0.0 0.00 3.36 F
907 3691 0.818296 GAGTCGTACTCCATGCAGGT 59.182 55.000 0.00 0.0 39.28 4.00 F
2995 5820 1.585006 GGCGGAGAGAAGACGTTCA 59.415 57.895 0.00 0.0 34.82 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 4723 0.389948 GCCGAGGTTGACACGAAGAT 60.390 55.000 0.00 0.00 0.00 2.40 R
2373 5187 1.593209 GGTCACCGCGAACTTGACA 60.593 57.895 22.66 0.00 41.27 3.58 R
2374 5188 2.654912 CGGTCACCGCGAACTTGAC 61.655 63.158 8.23 14.14 41.17 3.18 R
2691 5513 4.012895 GTGTTGTCCACCGCGCTG 62.013 66.667 5.56 0.00 38.18 5.18 R
2778 5603 2.091102 AACGGTTCGGGTCGATGTGT 62.091 55.000 0.00 0.00 35.23 3.72 R
3094 5919 2.726691 CGTGCTTACCGCCGAACAG 61.727 63.158 0.00 0.00 38.05 3.16 R
4113 7496 2.356844 GGGGATTAGGAGGCGACTTTTT 60.357 50.000 0.00 0.00 44.43 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 127 8.784043 GGGAAATAATGACAACTATGGATGTAC 58.216 37.037 0.00 0.00 0.00 2.90
122 135 4.644685 ACAACTATGGATGTACCCATTTGC 59.355 41.667 8.71 0.00 44.11 3.68
136 149 1.066002 CATTTGCGTTGGATAGCCAGG 59.934 52.381 0.00 0.00 46.91 4.45
137 150 1.312371 TTTGCGTTGGATAGCCAGGC 61.312 55.000 15.79 15.79 46.91 4.85
151 164 3.397439 AGGCCTGCATCGCTGTCT 61.397 61.111 3.11 0.00 0.00 3.41
177 191 1.399714 TTCCGAGCTCCGTGACATAT 58.600 50.000 8.47 0.00 36.31 1.78
227 248 3.393106 GGTTACTCGCCCCCGGAA 61.393 66.667 0.73 0.00 34.56 4.30
228 249 2.125391 GTTACTCGCCCCCGGAAC 60.125 66.667 0.73 0.00 34.56 3.62
245 266 2.485038 GGAACGTTCCGGCTAAATTTCA 59.515 45.455 30.33 0.00 37.65 2.69
247 268 3.757745 ACGTTCCGGCTAAATTTCATG 57.242 42.857 0.00 0.00 0.00 3.07
248 269 3.078837 ACGTTCCGGCTAAATTTCATGT 58.921 40.909 0.00 0.00 0.00 3.21
251 272 4.920927 CGTTCCGGCTAAATTTCATGTTTT 59.079 37.500 0.00 0.00 0.00 2.43
252 273 5.164100 CGTTCCGGCTAAATTTCATGTTTTG 60.164 40.000 0.00 0.00 0.00 2.44
253 274 5.713792 TCCGGCTAAATTTCATGTTTTGA 57.286 34.783 0.00 0.00 0.00 2.69
254 275 5.465935 TCCGGCTAAATTTCATGTTTTGAC 58.534 37.500 0.00 0.00 32.84 3.18
256 277 4.625311 CGGCTAAATTTCATGTTTTGACCC 59.375 41.667 0.00 0.00 32.84 4.46
257 278 5.566627 CGGCTAAATTTCATGTTTTGACCCT 60.567 40.000 0.00 0.00 32.84 4.34
261 282 8.620416 GCTAAATTTCATGTTTTGACCCTTTTT 58.380 29.630 0.00 0.00 32.84 1.94
312 333 3.087253 CCAGGGTCCATGGCGGTA 61.087 66.667 10.19 0.00 35.57 4.02
313 334 2.505982 CAGGGTCCATGGCGGTAG 59.494 66.667 6.96 0.00 35.57 3.18
314 335 2.768344 AGGGTCCATGGCGGTAGG 60.768 66.667 6.96 0.00 35.57 3.18
315 336 3.087906 GGGTCCATGGCGGTAGGT 61.088 66.667 6.96 0.00 35.57 3.08
317 338 1.339644 GGGTCCATGGCGGTAGGTTA 61.340 60.000 6.96 0.00 35.57 2.85
318 339 0.763035 GGTCCATGGCGGTAGGTTAT 59.237 55.000 6.96 0.00 35.57 1.89
319 340 1.972795 GGTCCATGGCGGTAGGTTATA 59.027 52.381 6.96 0.00 35.57 0.98
320 341 2.369532 GGTCCATGGCGGTAGGTTATAA 59.630 50.000 6.96 0.00 35.57 0.98
321 342 3.396560 GTCCATGGCGGTAGGTTATAAC 58.603 50.000 6.96 7.09 35.57 1.89
322 343 3.039743 TCCATGGCGGTAGGTTATAACA 58.960 45.455 17.16 0.00 35.57 2.41
323 344 3.070446 TCCATGGCGGTAGGTTATAACAG 59.930 47.826 17.16 4.38 35.57 3.16
324 345 2.607631 TGGCGGTAGGTTATAACAGC 57.392 50.000 17.16 12.56 36.28 4.40
325 346 1.875009 GGCGGTAGGTTATAACAGCC 58.125 55.000 17.16 16.80 46.91 4.85
326 347 2.904697 GCGGTAGGTTATAACAGCCT 57.095 50.000 17.16 7.99 41.48 4.58
328 349 4.532314 GCGGTAGGTTATAACAGCCTAT 57.468 45.455 17.16 0.00 41.64 2.57
329 350 4.492611 GCGGTAGGTTATAACAGCCTATC 58.507 47.826 17.16 8.94 41.64 2.08
331 352 4.492611 GGTAGGTTATAACAGCCTATCGC 58.507 47.826 17.16 0.00 41.64 4.58
332 353 3.679824 AGGTTATAACAGCCTATCGCC 57.320 47.619 17.16 0.00 35.79 5.54
333 354 2.969950 AGGTTATAACAGCCTATCGCCA 59.030 45.455 17.16 0.00 35.79 5.69
335 356 2.737252 GTTATAACAGCCTATCGCCAGC 59.263 50.000 10.81 0.00 38.78 4.85
337 358 1.334384 TAACAGCCTATCGCCAGCCA 61.334 55.000 0.00 0.00 38.78 4.75
338 359 2.190313 CAGCCTATCGCCAGCCAA 59.810 61.111 0.00 0.00 38.78 4.52
339 360 1.890979 CAGCCTATCGCCAGCCAAG 60.891 63.158 0.00 0.00 38.78 3.61
341 362 2.911143 CCTATCGCCAGCCAAGGT 59.089 61.111 0.00 0.00 0.00 3.50
343 364 1.227674 CTATCGCCAGCCAAGGTCC 60.228 63.158 0.00 0.00 0.00 4.46
344 365 2.666596 CTATCGCCAGCCAAGGTCCC 62.667 65.000 0.00 0.00 0.00 4.46
347 368 3.650950 GCCAGCCAAGGTCCCTGA 61.651 66.667 0.00 0.00 0.00 3.86
348 369 2.352805 CCAGCCAAGGTCCCTGAC 59.647 66.667 0.00 0.00 0.00 3.51
349 370 2.046892 CAGCCAAGGTCCCTGACG 60.047 66.667 0.00 0.00 32.65 4.35
352 373 0.325296 AGCCAAGGTCCCTGACGATA 60.325 55.000 0.00 0.00 32.65 2.92
353 374 0.105039 GCCAAGGTCCCTGACGATAG 59.895 60.000 0.00 0.00 46.19 2.08
354 375 0.753262 CCAAGGTCCCTGACGATAGG 59.247 60.000 0.00 0.00 43.77 2.57
361 382 3.065575 CCTGACGATAGGGTTGCAC 57.934 57.895 0.00 0.00 43.77 4.57
362 383 0.249120 CCTGACGATAGGGTTGCACA 59.751 55.000 0.00 0.00 43.77 4.57
363 384 1.134401 CCTGACGATAGGGTTGCACAT 60.134 52.381 0.00 0.00 43.77 3.21
364 385 2.205074 CTGACGATAGGGTTGCACATC 58.795 52.381 0.00 0.00 43.77 3.06
366 387 2.236146 TGACGATAGGGTTGCACATCTT 59.764 45.455 0.00 0.00 43.77 2.40
368 389 3.793559 ACGATAGGGTTGCACATCTTAC 58.206 45.455 0.00 0.00 43.77 2.34
369 390 3.131396 CGATAGGGTTGCACATCTTACC 58.869 50.000 0.00 0.00 0.00 2.85
370 391 3.431626 CGATAGGGTTGCACATCTTACCA 60.432 47.826 5.41 0.00 32.20 3.25
372 393 3.237268 AGGGTTGCACATCTTACCAAA 57.763 42.857 5.41 0.00 32.20 3.28
373 394 3.571590 AGGGTTGCACATCTTACCAAAA 58.428 40.909 5.41 0.00 32.20 2.44
374 395 3.964031 AGGGTTGCACATCTTACCAAAAA 59.036 39.130 5.41 0.00 32.20 1.94
400 421 9.463443 AAAAATTCTAAGTATGAAACACAGTGC 57.537 29.630 0.00 0.00 0.00 4.40
401 422 7.744087 AATTCTAAGTATGAAACACAGTGCA 57.256 32.000 0.00 0.00 0.00 4.57
403 424 6.726258 TCTAAGTATGAAACACAGTGCATG 57.274 37.500 0.00 0.00 0.00 4.06
404 425 3.837213 AGTATGAAACACAGTGCATGC 57.163 42.857 11.82 11.82 0.00 4.06
406 427 3.438087 AGTATGAAACACAGTGCATGCTC 59.562 43.478 20.33 15.94 29.59 4.26
408 429 1.875514 TGAAACACAGTGCATGCTCTC 59.124 47.619 19.00 9.34 0.00 3.20
411 432 0.604780 ACACAGTGCATGCTCTCACC 60.605 55.000 19.00 0.16 33.90 4.02
412 433 0.321387 CACAGTGCATGCTCTCACCT 60.321 55.000 19.00 2.45 33.90 4.00
413 434 1.066645 CACAGTGCATGCTCTCACCTA 60.067 52.381 19.00 0.00 33.90 3.08
414 435 1.066573 ACAGTGCATGCTCTCACCTAC 60.067 52.381 19.00 5.87 33.90 3.18
416 437 0.807667 GTGCATGCTCTCACCTACCG 60.808 60.000 20.33 0.00 0.00 4.02
418 439 0.528684 GCATGCTCTCACCTACCGTC 60.529 60.000 11.37 0.00 0.00 4.79
419 440 0.248661 CATGCTCTCACCTACCGTCG 60.249 60.000 0.00 0.00 0.00 5.12
420 441 1.384989 ATGCTCTCACCTACCGTCGG 61.385 60.000 10.48 10.48 0.00 4.79
421 442 2.772691 GCTCTCACCTACCGTCGGG 61.773 68.421 17.28 0.00 40.11 5.14
422 443 2.753043 TCTCACCTACCGTCGGGC 60.753 66.667 17.28 0.00 36.48 6.13
424 445 3.352338 CTCACCTACCGTCGGGCAC 62.352 68.421 17.28 0.00 36.48 5.01
437 458 2.267961 GGCACCTTGTCGGTAGGG 59.732 66.667 0.00 0.00 46.94 3.53
438 459 2.590114 GGCACCTTGTCGGTAGGGT 61.590 63.158 0.00 0.00 46.94 4.34
440 461 0.953960 GCACCTTGTCGGTAGGGTTG 60.954 60.000 0.00 0.00 46.94 3.77
441 462 0.395312 CACCTTGTCGGTAGGGTTGT 59.605 55.000 0.00 0.00 46.94 3.32
445 466 2.353406 CCTTGTCGGTAGGGTTGTACAG 60.353 54.545 0.00 0.00 0.00 2.74
446 467 1.259609 TGTCGGTAGGGTTGTACAGG 58.740 55.000 0.00 0.00 0.00 4.00
447 468 0.108472 GTCGGTAGGGTTGTACAGGC 60.108 60.000 0.00 0.00 0.00 4.85
448 469 0.251922 TCGGTAGGGTTGTACAGGCT 60.252 55.000 0.00 0.00 0.00 4.58
449 470 1.005805 TCGGTAGGGTTGTACAGGCTA 59.994 52.381 0.00 0.00 0.00 3.93
450 471 1.135721 CGGTAGGGTTGTACAGGCTAC 59.864 57.143 0.00 0.00 0.00 3.58
451 472 1.483827 GGTAGGGTTGTACAGGCTACC 59.516 57.143 5.97 5.97 34.32 3.18
452 473 1.135721 GTAGGGTTGTACAGGCTACCG 59.864 57.143 8.08 0.00 35.58 4.02
453 474 1.449070 GGGTTGTACAGGCTACCGC 60.449 63.158 8.08 0.00 35.58 5.68
464 485 1.521681 GCTACCGCCAGCCTACTTG 60.522 63.158 0.00 0.00 35.40 3.16
465 486 1.956629 GCTACCGCCAGCCTACTTGA 61.957 60.000 0.00 0.00 35.40 3.02
466 487 0.179108 CTACCGCCAGCCTACTTGAC 60.179 60.000 0.00 0.00 0.00 3.18
468 489 2.509336 CGCCAGCCTACTTGACGG 60.509 66.667 0.00 0.00 0.00 4.79
470 491 1.895238 GCCAGCCTACTTGACGGTA 59.105 57.895 0.00 0.00 0.00 4.02
471 492 0.179108 GCCAGCCTACTTGACGGTAG 60.179 60.000 0.00 0.00 38.95 3.18
479 500 1.134228 ACTTGACGGTAGGGGTGTTT 58.866 50.000 0.00 0.00 0.00 2.83
480 501 1.071228 ACTTGACGGTAGGGGTGTTTC 59.929 52.381 0.00 0.00 0.00 2.78
481 502 0.397564 TTGACGGTAGGGGTGTTTCC 59.602 55.000 0.00 0.00 0.00 3.13
482 503 0.472352 TGACGGTAGGGGTGTTTCCT 60.472 55.000 0.00 0.00 38.36 3.36
487 508 0.107993 GTAGGGGTGTTTCCTACCGC 60.108 60.000 8.64 0.00 46.75 5.68
488 509 2.045634 GGGGTGTTTCCTACCGCC 60.046 66.667 0.00 0.00 43.22 6.13
489 510 2.751688 GGGTGTTTCCTACCGCCA 59.248 61.111 0.00 0.00 39.14 5.69
490 511 1.073548 GGGTGTTTCCTACCGCCAA 59.926 57.895 0.00 0.00 39.14 4.52
506 527 3.661648 AAGGTCCCTGGCCGCAAT 61.662 61.111 0.00 0.00 0.00 3.56
507 528 2.305607 AAGGTCCCTGGCCGCAATA 61.306 57.895 0.00 0.00 0.00 1.90
510 531 1.523938 GTCCCTGGCCGCAATAGAC 60.524 63.158 0.00 0.00 0.00 2.59
511 532 1.689233 TCCCTGGCCGCAATAGACT 60.689 57.895 0.00 0.00 0.00 3.24
512 533 1.227674 CCCTGGCCGCAATAGACTC 60.228 63.158 0.00 0.00 0.00 3.36
513 534 1.690219 CCCTGGCCGCAATAGACTCT 61.690 60.000 0.00 0.00 0.00 3.24
514 535 0.531532 CCTGGCCGCAATAGACTCTG 60.532 60.000 0.00 0.00 0.00 3.35
515 536 0.461548 CTGGCCGCAATAGACTCTGA 59.538 55.000 0.00 0.00 0.00 3.27
518 539 1.565305 GCCGCAATAGACTCTGACAG 58.435 55.000 0.00 0.00 0.00 3.51
519 540 1.134965 GCCGCAATAGACTCTGACAGT 60.135 52.381 1.59 0.00 38.45 3.55
521 542 3.793801 GCCGCAATAGACTCTGACAGTAG 60.794 52.174 1.59 1.67 34.41 2.57
522 543 3.367607 CGCAATAGACTCTGACAGTAGC 58.632 50.000 1.59 0.00 34.41 3.58
523 544 3.367607 GCAATAGACTCTGACAGTAGCG 58.632 50.000 1.59 0.00 34.41 4.26
524 545 3.065510 GCAATAGACTCTGACAGTAGCGA 59.934 47.826 1.59 0.00 34.41 4.93
525 546 4.438880 GCAATAGACTCTGACAGTAGCGAA 60.439 45.833 1.59 0.00 34.41 4.70
526 547 5.641709 CAATAGACTCTGACAGTAGCGAAA 58.358 41.667 1.59 0.00 34.41 3.46
527 548 3.840890 AGACTCTGACAGTAGCGAAAG 57.159 47.619 1.59 0.00 34.41 2.62
528 549 2.490115 AGACTCTGACAGTAGCGAAAGG 59.510 50.000 1.59 0.00 34.41 3.11
529 550 1.546476 ACTCTGACAGTAGCGAAAGGG 59.454 52.381 1.59 0.00 31.37 3.95
530 551 0.246635 TCTGACAGTAGCGAAAGGGC 59.753 55.000 1.59 0.00 0.00 5.19
532 553 1.295423 GACAGTAGCGAAAGGGCCA 59.705 57.895 6.18 0.00 0.00 5.36
534 555 1.192146 ACAGTAGCGAAAGGGCCAGA 61.192 55.000 6.18 0.00 0.00 3.86
535 556 0.179000 CAGTAGCGAAAGGGCCAGAT 59.821 55.000 6.18 0.00 0.00 2.90
536 557 0.466124 AGTAGCGAAAGGGCCAGATC 59.534 55.000 6.18 0.00 0.00 2.75
537 558 0.533085 GTAGCGAAAGGGCCAGATCC 60.533 60.000 6.18 0.00 0.00 3.36
538 559 1.696097 TAGCGAAAGGGCCAGATCCC 61.696 60.000 6.18 0.00 46.93 3.85
545 566 3.207452 GGGCCAGATCCCGAAATTT 57.793 52.632 4.39 0.00 36.38 1.82
546 567 1.485124 GGGCCAGATCCCGAAATTTT 58.515 50.000 4.39 0.00 36.38 1.82
550 571 3.445805 GGCCAGATCCCGAAATTTTTACA 59.554 43.478 0.00 0.00 0.00 2.41
552 573 5.474825 GCCAGATCCCGAAATTTTTACAAA 58.525 37.500 0.00 0.00 0.00 2.83
553 574 5.347635 GCCAGATCCCGAAATTTTTACAAAC 59.652 40.000 0.00 0.00 0.00 2.93
555 576 7.576098 GCCAGATCCCGAAATTTTTACAAACTA 60.576 37.037 0.00 0.00 0.00 2.24
556 577 7.968405 CCAGATCCCGAAATTTTTACAAACTAG 59.032 37.037 0.00 0.00 0.00 2.57
557 578 8.726988 CAGATCCCGAAATTTTTACAAACTAGA 58.273 33.333 0.00 0.00 0.00 2.43
558 579 9.462606 AGATCCCGAAATTTTTACAAACTAGAT 57.537 29.630 0.00 0.00 0.00 1.98
559 580 9.717892 GATCCCGAAATTTTTACAAACTAGATC 57.282 33.333 0.00 0.00 0.00 2.75
560 581 8.624367 TCCCGAAATTTTTACAAACTAGATCA 57.376 30.769 0.00 0.00 0.00 2.92
561 582 8.726988 TCCCGAAATTTTTACAAACTAGATCAG 58.273 33.333 0.00 0.00 0.00 2.90
587 608 9.631452 GATCTTGATTAACTTTCAGAAAAAGGG 57.369 33.333 0.00 0.00 0.00 3.95
589 610 8.630037 TCTTGATTAACTTTCAGAAAAAGGGTC 58.370 33.333 0.00 0.00 0.00 4.46
590 611 7.889873 TGATTAACTTTCAGAAAAAGGGTCA 57.110 32.000 0.00 0.00 0.00 4.02
592 613 8.754080 TGATTAACTTTCAGAAAAAGGGTCAAA 58.246 29.630 0.00 0.00 0.00 2.69
594 615 8.766000 TTAACTTTCAGAAAAAGGGTCAAAAC 57.234 30.769 0.00 0.00 0.00 2.43
595 616 6.353404 ACTTTCAGAAAAAGGGTCAAAACA 57.647 33.333 0.00 0.00 0.00 2.83
596 617 6.163476 ACTTTCAGAAAAAGGGTCAAAACAC 58.837 36.000 0.00 0.00 0.00 3.32
597 618 4.364415 TCAGAAAAAGGGTCAAAACACG 57.636 40.909 0.00 0.00 32.44 4.49
599 620 4.459685 TCAGAAAAAGGGTCAAAACACGAA 59.540 37.500 0.00 0.00 32.44 3.85
600 621 5.047943 TCAGAAAAAGGGTCAAAACACGAAA 60.048 36.000 0.00 0.00 32.44 3.46
601 622 5.810074 CAGAAAAAGGGTCAAAACACGAAAT 59.190 36.000 0.00 0.00 32.44 2.17
603 624 6.876789 AGAAAAAGGGTCAAAACACGAAATTT 59.123 30.769 0.00 0.00 32.44 1.82
605 626 7.764695 AAAAGGGTCAAAACACGAAATTTAG 57.235 32.000 0.00 0.00 32.44 1.85
606 627 4.866921 AGGGTCAAAACACGAAATTTAGC 58.133 39.130 0.00 0.00 32.44 3.09
607 628 3.985279 GGGTCAAAACACGAAATTTAGCC 59.015 43.478 0.00 0.00 0.00 3.93
608 629 3.985279 GGTCAAAACACGAAATTTAGCCC 59.015 43.478 0.00 0.00 0.00 5.19
609 630 3.985279 GTCAAAACACGAAATTTAGCCCC 59.015 43.478 0.00 0.00 0.00 5.80
610 631 3.006003 TCAAAACACGAAATTTAGCCCCC 59.994 43.478 0.00 0.00 0.00 5.40
617 638 2.384828 GAAATTTAGCCCCCGGAACAT 58.615 47.619 0.73 0.00 0.00 2.71
643 1371 3.141398 GCTCCAACTGATCAACTTGTCA 58.859 45.455 0.00 0.00 0.00 3.58
644 1372 3.058639 GCTCCAACTGATCAACTTGTCAC 60.059 47.826 0.00 0.00 0.00 3.67
647 1375 3.499918 CCAACTGATCAACTTGTCACCTC 59.500 47.826 0.00 0.00 0.00 3.85
663 1391 5.926542 TGTCACCTCGATTTTGTTCTCTTAG 59.073 40.000 0.00 0.00 0.00 2.18
664 1392 5.348997 GTCACCTCGATTTTGTTCTCTTAGG 59.651 44.000 0.00 0.00 0.00 2.69
707 1435 2.301870 ACTACGCTTCCCAGTGATGAAA 59.698 45.455 0.00 0.00 34.31 2.69
715 1443 5.706916 CTTCCCAGTGATGAAATTCAACAG 58.293 41.667 6.18 0.00 29.64 3.16
723 1455 9.154847 CAGTGATGAAATTCAACAGTCTACATA 57.845 33.333 10.11 0.00 31.59 2.29
907 3691 0.818296 GAGTCGTACTCCATGCAGGT 59.182 55.000 0.00 0.00 39.28 4.00
1050 3855 2.801631 GCTCTACCTGCATCCGGCT 61.802 63.158 0.00 0.00 45.15 5.52
1218 4026 3.982372 CTACGACCACGCCACGCAT 62.982 63.158 0.00 0.00 43.96 4.73
2277 5091 1.734477 CGACACGTTGAGGGAGCTG 60.734 63.158 0.00 0.00 0.00 4.24
2316 5130 2.268920 GGCGTGATCCTGAAGCCA 59.731 61.111 4.01 0.00 46.48 4.75
2691 5513 3.330853 GCGATGATGACGACGGCC 61.331 66.667 0.00 0.00 0.00 6.13
2778 5603 3.781307 CTTGCGATGGGGTCCGGA 61.781 66.667 0.00 0.00 0.00 5.14
2796 5621 2.260434 CACATCGACCCGAACCGT 59.740 61.111 0.00 0.00 39.99 4.83
2802 5627 2.342650 CGACCCGAACCGTTCCCTA 61.343 63.158 5.67 0.00 0.00 3.53
2817 5642 3.470888 CTAGACCCGGGCCTGGTG 61.471 72.222 29.35 21.77 35.85 4.17
2955 5780 3.119388 TCGATCTCAATTACCCGTCGTTT 60.119 43.478 0.00 0.00 0.00 3.60
2995 5820 1.585006 GGCGGAGAGAAGACGTTCA 59.415 57.895 0.00 0.00 34.82 3.18
3201 6026 1.134098 GGATCGTTGACATGGGTGGAT 60.134 52.381 0.00 0.00 0.00 3.41
3275 6100 1.937191 TCTCGGCCATAGGATATGCA 58.063 50.000 2.24 0.00 0.00 3.96
3314 6211 4.948341 AGTGACCATACGCCAATACATA 57.052 40.909 0.00 0.00 0.00 2.29
3320 6217 5.001232 ACCATACGCCAATACATAATGGTC 58.999 41.667 0.00 0.00 41.24 4.02
3557 6712 2.187958 CACCATTGTCCTCCTCCACTA 58.812 52.381 0.00 0.00 0.00 2.74
3644 6823 1.615107 CGCCGACAAGACCGAAACTC 61.615 60.000 0.00 0.00 0.00 3.01
3646 6825 1.068055 GCCGACAAGACCGAAACTCTA 60.068 52.381 0.00 0.00 0.00 2.43
3695 6874 2.292851 TGTCCACTAGATCCCATCACCA 60.293 50.000 0.00 0.00 0.00 4.17
3774 6953 1.420138 ACCCCACTACAAGACACCAAG 59.580 52.381 0.00 0.00 0.00 3.61
3780 6959 3.565482 CACTACAAGACACCAAGCACAAT 59.435 43.478 0.00 0.00 0.00 2.71
3795 6974 2.789208 CACAATTGCAATAGCCGACAG 58.211 47.619 13.39 0.00 41.13 3.51
3839 7018 2.094659 CGCCGACCATCAGACACAC 61.095 63.158 0.00 0.00 0.00 3.82
3915 7297 0.947244 CCATTAGAATGCCACCGAGC 59.053 55.000 0.00 0.00 35.08 5.03
3932 7314 2.159043 CGAGCTGGAGGAAGAGCATAAA 60.159 50.000 0.00 0.00 37.70 1.40
4112 7495 2.747686 GCCGGTGTTGAGGAAGGA 59.252 61.111 1.90 0.00 0.00 3.36
4113 7496 1.072505 GCCGGTGTTGAGGAAGGAA 59.927 57.895 1.90 0.00 0.00 3.36
4136 7519 0.760945 AGTCGCCTCCTAATCCCCTG 60.761 60.000 0.00 0.00 0.00 4.45
4141 7524 1.216990 CCTCCTAATCCCCTGTGCTT 58.783 55.000 0.00 0.00 0.00 3.91
4142 7525 1.566231 CCTCCTAATCCCCTGTGCTTT 59.434 52.381 0.00 0.00 0.00 3.51
4143 7526 2.648059 CTCCTAATCCCCTGTGCTTTG 58.352 52.381 0.00 0.00 0.00 2.77
4145 7528 2.026262 TCCTAATCCCCTGTGCTTTGAC 60.026 50.000 0.00 0.00 0.00 3.18
4146 7529 2.025887 CCTAATCCCCTGTGCTTTGACT 60.026 50.000 0.00 0.00 0.00 3.41
4148 7531 4.141390 CCTAATCCCCTGTGCTTTGACTAT 60.141 45.833 0.00 0.00 0.00 2.12
4149 7532 4.322057 AATCCCCTGTGCTTTGACTATT 57.678 40.909 0.00 0.00 0.00 1.73
4150 7533 3.350219 TCCCCTGTGCTTTGACTATTC 57.650 47.619 0.00 0.00 0.00 1.75
4151 7534 2.912956 TCCCCTGTGCTTTGACTATTCT 59.087 45.455 0.00 0.00 0.00 2.40
4155 7538 4.946157 CCCTGTGCTTTGACTATTCTCATT 59.054 41.667 0.00 0.00 0.00 2.57
4156 7539 6.115446 CCCTGTGCTTTGACTATTCTCATTA 58.885 40.000 0.00 0.00 0.00 1.90
4157 7540 6.599244 CCCTGTGCTTTGACTATTCTCATTAA 59.401 38.462 0.00 0.00 0.00 1.40
4158 7541 7.121168 CCCTGTGCTTTGACTATTCTCATTAAA 59.879 37.037 0.00 0.00 0.00 1.52
4159 7542 8.680903 CCTGTGCTTTGACTATTCTCATTAAAT 58.319 33.333 0.00 0.00 0.00 1.40
4160 7543 9.713740 CTGTGCTTTGACTATTCTCATTAAATC 57.286 33.333 0.00 0.00 0.00 2.17
4161 7544 9.453572 TGTGCTTTGACTATTCTCATTAAATCT 57.546 29.630 0.00 0.00 0.00 2.40
4204 7587 4.503741 TTTCATTTACTTCCAGTGCTGC 57.496 40.909 0.00 0.00 0.00 5.25
4205 7588 3.138884 TCATTTACTTCCAGTGCTGCA 57.861 42.857 0.00 0.00 0.00 4.41
4206 7589 3.689347 TCATTTACTTCCAGTGCTGCAT 58.311 40.909 5.27 0.00 0.00 3.96
4207 7590 4.842574 TCATTTACTTCCAGTGCTGCATA 58.157 39.130 5.27 0.00 0.00 3.14
4208 7591 5.252547 TCATTTACTTCCAGTGCTGCATAA 58.747 37.500 5.27 0.00 0.00 1.90
4209 7592 5.887598 TCATTTACTTCCAGTGCTGCATAAT 59.112 36.000 5.27 0.00 0.00 1.28
4210 7593 5.565592 TTTACTTCCAGTGCTGCATAATG 57.434 39.130 5.27 5.56 0.00 1.90
4211 7594 3.354948 ACTTCCAGTGCTGCATAATGA 57.645 42.857 5.27 0.00 0.00 2.57
4212 7595 3.894759 ACTTCCAGTGCTGCATAATGAT 58.105 40.909 5.27 0.00 0.00 2.45
4213 7596 5.039920 ACTTCCAGTGCTGCATAATGATA 57.960 39.130 5.27 0.00 0.00 2.15
4214 7597 5.628130 ACTTCCAGTGCTGCATAATGATAT 58.372 37.500 5.27 0.00 0.00 1.63
4215 7598 6.772605 ACTTCCAGTGCTGCATAATGATATA 58.227 36.000 5.27 0.00 0.00 0.86
4216 7599 6.652481 ACTTCCAGTGCTGCATAATGATATAC 59.348 38.462 5.27 0.00 0.00 1.47
4217 7600 6.112927 TCCAGTGCTGCATAATGATATACA 57.887 37.500 5.27 0.00 0.00 2.29
4218 7601 6.532826 TCCAGTGCTGCATAATGATATACAA 58.467 36.000 5.27 0.00 0.00 2.41
4219 7602 6.997476 TCCAGTGCTGCATAATGATATACAAA 59.003 34.615 5.27 0.00 0.00 2.83
4220 7603 7.173735 TCCAGTGCTGCATAATGATATACAAAG 59.826 37.037 5.27 0.00 0.00 2.77
4221 7604 7.173735 CCAGTGCTGCATAATGATATACAAAGA 59.826 37.037 5.27 0.00 0.00 2.52
4222 7605 8.562052 CAGTGCTGCATAATGATATACAAAGAA 58.438 33.333 5.27 0.00 0.00 2.52
4223 7606 9.293404 AGTGCTGCATAATGATATACAAAGAAT 57.707 29.630 5.27 0.00 0.00 2.40
4235 7618 9.725019 TGATATACAAAGAATATGGGTGATGAC 57.275 33.333 0.00 0.00 0.00 3.06
4236 7619 9.725019 GATATACAAAGAATATGGGTGATGACA 57.275 33.333 0.00 0.00 0.00 3.58
4239 7622 9.730705 ATACAAAGAATATGGGTGATGACATAG 57.269 33.333 0.00 0.00 33.50 2.23
4240 7623 6.488006 ACAAAGAATATGGGTGATGACATAGC 59.512 38.462 0.00 0.00 33.50 2.97
4241 7624 6.445451 AAGAATATGGGTGATGACATAGCT 57.555 37.500 0.00 0.00 33.50 3.32
4242 7625 6.445451 AGAATATGGGTGATGACATAGCTT 57.555 37.500 0.00 0.00 33.50 3.74
4243 7626 7.559335 AGAATATGGGTGATGACATAGCTTA 57.441 36.000 0.00 0.00 33.50 3.09
4244 7627 7.619050 AGAATATGGGTGATGACATAGCTTAG 58.381 38.462 0.00 0.00 33.50 2.18
4245 7628 6.942163 ATATGGGTGATGACATAGCTTAGT 57.058 37.500 0.00 0.00 33.50 2.24
4246 7629 8.435931 AATATGGGTGATGACATAGCTTAGTA 57.564 34.615 0.00 0.00 33.50 1.82
4247 7630 5.531122 TGGGTGATGACATAGCTTAGTAC 57.469 43.478 0.00 0.00 0.00 2.73
4248 7631 5.208890 TGGGTGATGACATAGCTTAGTACT 58.791 41.667 0.00 0.00 0.00 2.73
4249 7632 5.069119 TGGGTGATGACATAGCTTAGTACTG 59.931 44.000 5.39 0.00 0.00 2.74
4250 7633 5.069251 GGGTGATGACATAGCTTAGTACTGT 59.931 44.000 5.39 0.00 0.00 3.55
4251 7634 6.407074 GGGTGATGACATAGCTTAGTACTGTT 60.407 42.308 5.39 0.00 0.00 3.16
4252 7635 6.477033 GGTGATGACATAGCTTAGTACTGTTG 59.523 42.308 5.39 0.00 0.00 3.33
4253 7636 7.258441 GTGATGACATAGCTTAGTACTGTTGA 58.742 38.462 5.39 0.00 0.00 3.18
4254 7637 7.433719 GTGATGACATAGCTTAGTACTGTTGAG 59.566 40.741 5.39 0.00 0.00 3.02
4255 7638 7.339466 TGATGACATAGCTTAGTACTGTTGAGA 59.661 37.037 5.39 0.00 0.00 3.27
4256 7639 6.853720 TGACATAGCTTAGTACTGTTGAGAC 58.146 40.000 5.39 0.00 0.00 3.36
4257 7640 6.433093 TGACATAGCTTAGTACTGTTGAGACA 59.567 38.462 5.39 0.00 0.00 3.41
4258 7641 6.622549 ACATAGCTTAGTACTGTTGAGACAC 58.377 40.000 5.39 0.00 0.00 3.67
4259 7642 6.208797 ACATAGCTTAGTACTGTTGAGACACA 59.791 38.462 5.39 0.00 0.00 3.72
4260 7643 5.531122 AGCTTAGTACTGTTGAGACACAA 57.469 39.130 5.39 0.00 36.02 3.33
4261 7644 5.914033 AGCTTAGTACTGTTGAGACACAAA 58.086 37.500 5.39 0.00 40.36 2.83
4262 7645 6.346096 AGCTTAGTACTGTTGAGACACAAAA 58.654 36.000 5.39 0.00 40.36 2.44
4263 7646 6.480320 AGCTTAGTACTGTTGAGACACAAAAG 59.520 38.462 5.39 1.61 46.21 2.27
4264 7647 6.479001 GCTTAGTACTGTTGAGACACAAAAGA 59.521 38.462 5.39 0.00 44.25 2.52
4265 7648 7.306866 GCTTAGTACTGTTGAGACACAAAAGAG 60.307 40.741 5.39 0.00 44.25 2.85
4266 7649 5.978814 AGTACTGTTGAGACACAAAAGAGT 58.021 37.500 9.51 4.66 44.25 3.24
4267 7650 7.108841 AGTACTGTTGAGACACAAAAGAGTA 57.891 36.000 9.51 3.85 44.25 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.815846 ACATATATGTGCATTTGCTGACGA 59.184 37.500 17.60 0.00 40.03 4.20
2 3 5.099484 ACATATATGTGCATTTGCTGACG 57.901 39.130 17.60 0.00 40.03 4.35
3 4 7.194607 ACTACATATATGTGCATTTGCTGAC 57.805 36.000 25.48 0.00 41.89 3.51
4 5 7.641760 CAACTACATATATGTGCATTTGCTGA 58.358 34.615 25.48 3.44 41.89 4.26
5 6 6.361481 GCAACTACATATATGTGCATTTGCTG 59.639 38.462 27.44 16.80 41.89 4.41
7 8 6.142798 GTGCAACTACATATATGTGCATTTGC 59.857 38.462 27.70 27.70 41.89 3.68
10 11 5.757808 TCGTGCAACTACATATATGTGCATT 59.242 36.000 25.48 14.64 41.89 3.56
11 12 5.296748 TCGTGCAACTACATATATGTGCAT 58.703 37.500 25.48 9.94 41.89 3.96
14 15 5.175673 CCACTCGTGCAACTACATATATGTG 59.824 44.000 25.48 17.64 41.89 3.21
15 16 5.289595 CCACTCGTGCAACTACATATATGT 58.710 41.667 21.57 21.57 44.48 2.29
73 74 1.642112 TTCCCATTTGCAGCCATGAA 58.358 45.000 0.00 0.00 0.00 2.57
74 75 1.642112 TTTCCCATTTGCAGCCATGA 58.358 45.000 0.00 0.00 0.00 3.07
75 76 2.702592 ATTTCCCATTTGCAGCCATG 57.297 45.000 0.00 0.00 0.00 3.66
76 77 4.409574 TCATTATTTCCCATTTGCAGCCAT 59.590 37.500 0.00 0.00 0.00 4.40
77 78 3.773667 TCATTATTTCCCATTTGCAGCCA 59.226 39.130 0.00 0.00 0.00 4.75
79 80 4.757594 TGTCATTATTTCCCATTTGCAGC 58.242 39.130 0.00 0.00 0.00 5.25
114 127 0.385390 GGCTATCCAACGCAAATGGG 59.615 55.000 0.11 0.00 38.54 4.00
122 135 1.524621 CAGGCCTGGCTATCCAACG 60.525 63.158 26.14 0.00 42.91 4.10
136 149 1.094073 AATCAGACAGCGATGCAGGC 61.094 55.000 0.00 4.45 0.00 4.85
137 150 0.656259 CAATCAGACAGCGATGCAGG 59.344 55.000 0.00 0.00 0.00 4.85
151 164 0.320374 ACGGAGCTCGGAAACAATCA 59.680 50.000 26.25 0.00 44.45 2.57
177 191 7.027874 ACCTGTCTGTTCAATTATTTAGGGA 57.972 36.000 0.00 0.00 0.00 4.20
227 248 9.542809 TCAAAACATGAAATTTAGCCGGAACGT 62.543 37.037 5.05 0.00 43.33 3.99
228 249 7.275719 TCAAAACATGAAATTTAGCCGGAACG 61.276 38.462 5.05 0.00 44.16 3.95
229 250 5.923684 TCAAAACATGAAATTTAGCCGGAAC 59.076 36.000 5.05 0.00 34.30 3.62
230 251 5.923684 GTCAAAACATGAAATTTAGCCGGAA 59.076 36.000 5.05 0.00 40.50 4.30
232 253 4.625311 GGTCAAAACATGAAATTTAGCCGG 59.375 41.667 0.00 0.00 40.50 6.13
233 254 4.625311 GGGTCAAAACATGAAATTTAGCCG 59.375 41.667 0.00 0.00 40.50 5.52
235 256 7.728847 AAAGGGTCAAAACATGAAATTTAGC 57.271 32.000 0.00 0.00 40.50 3.09
296 317 2.505982 CTACCGCCATGGACCCTG 59.494 66.667 18.40 0.04 42.00 4.45
299 320 0.763035 ATAACCTACCGCCATGGACC 59.237 55.000 18.40 0.00 42.00 4.46
300 321 3.181463 TGTTATAACCTACCGCCATGGAC 60.181 47.826 18.40 5.97 42.00 4.02
303 324 2.806244 GCTGTTATAACCTACCGCCATG 59.194 50.000 13.01 0.00 0.00 3.66
305 326 1.139455 GGCTGTTATAACCTACCGCCA 59.861 52.381 13.01 0.00 42.23 5.69
306 327 1.415289 AGGCTGTTATAACCTACCGCC 59.585 52.381 13.01 14.83 42.76 6.13
307 328 2.904697 AGGCTGTTATAACCTACCGC 57.095 50.000 13.01 7.54 29.98 5.68
308 329 4.730657 CGATAGGCTGTTATAACCTACCG 58.269 47.826 13.01 6.58 36.76 4.02
309 330 4.492611 GCGATAGGCTGTTATAACCTACC 58.507 47.826 13.01 11.02 38.83 3.18
324 345 1.227674 GACCTTGGCTGGCGATAGG 60.228 63.158 12.99 12.99 0.00 2.57
325 346 1.227674 GGACCTTGGCTGGCGATAG 60.228 63.158 0.00 0.00 0.00 2.08
326 347 2.742116 GGGACCTTGGCTGGCGATA 61.742 63.158 0.00 0.00 0.00 2.92
327 348 4.115199 GGGACCTTGGCTGGCGAT 62.115 66.667 0.00 0.00 0.00 4.58
331 352 2.352805 GTCAGGGACCTTGGCTGG 59.647 66.667 0.00 0.00 0.00 4.85
332 353 1.903877 ATCGTCAGGGACCTTGGCTG 61.904 60.000 6.64 0.52 0.00 4.85
333 354 0.325296 TATCGTCAGGGACCTTGGCT 60.325 55.000 6.64 0.00 0.00 4.75
335 356 0.753262 CCTATCGTCAGGGACCTTGG 59.247 60.000 3.41 0.00 31.47 3.61
343 364 0.249120 TGTGCAACCCTATCGTCAGG 59.751 55.000 0.00 0.00 34.36 3.86
344 365 2.159043 AGATGTGCAACCCTATCGTCAG 60.159 50.000 0.00 0.00 34.36 3.51
345 366 1.831106 AGATGTGCAACCCTATCGTCA 59.169 47.619 0.00 0.00 34.36 4.35
346 367 2.604046 AGATGTGCAACCCTATCGTC 57.396 50.000 0.00 0.00 34.36 4.20
347 368 3.431766 GGTAAGATGTGCAACCCTATCGT 60.432 47.826 0.00 0.00 34.36 3.73
348 369 3.131396 GGTAAGATGTGCAACCCTATCG 58.869 50.000 0.00 0.00 34.36 2.92
349 370 4.150897 TGGTAAGATGTGCAACCCTATC 57.849 45.455 0.62 0.00 34.36 2.08
352 373 2.969821 TTGGTAAGATGTGCAACCCT 57.030 45.000 0.62 0.00 34.36 4.34
353 374 4.329462 TTTTTGGTAAGATGTGCAACCC 57.671 40.909 0.62 0.00 34.36 4.11
374 395 9.463443 GCACTGTGTTTCATACTTAGAATTTTT 57.537 29.630 9.86 0.00 0.00 1.94
376 397 8.165239 TGCACTGTGTTTCATACTTAGAATTT 57.835 30.769 9.86 0.00 0.00 1.82
378 399 7.627088 GCATGCACTGTGTTTCATACTTAGAAT 60.627 37.037 14.21 0.00 0.00 2.40
379 400 6.348458 GCATGCACTGTGTTTCATACTTAGAA 60.348 38.462 14.21 0.00 0.00 2.10
381 402 5.122869 AGCATGCACTGTGTTTCATACTTAG 59.877 40.000 21.98 0.00 0.00 2.18
383 404 3.822735 AGCATGCACTGTGTTTCATACTT 59.177 39.130 21.98 0.00 0.00 2.24
385 406 3.438087 AGAGCATGCACTGTGTTTCATAC 59.562 43.478 21.98 0.00 0.00 2.39
386 407 3.678289 AGAGCATGCACTGTGTTTCATA 58.322 40.909 21.98 0.00 0.00 2.15
387 408 2.486982 GAGAGCATGCACTGTGTTTCAT 59.513 45.455 22.85 1.74 0.00 2.57
388 409 1.875514 GAGAGCATGCACTGTGTTTCA 59.124 47.619 22.85 0.00 0.00 2.69
389 410 1.875514 TGAGAGCATGCACTGTGTTTC 59.124 47.619 22.85 6.79 0.00 2.78
392 413 0.604780 GGTGAGAGCATGCACTGTGT 60.605 55.000 22.85 0.00 35.43 3.72
393 414 0.321387 AGGTGAGAGCATGCACTGTG 60.321 55.000 22.85 2.76 35.43 3.66
394 415 1.066573 GTAGGTGAGAGCATGCACTGT 60.067 52.381 22.85 0.00 35.43 3.55
395 416 1.649664 GTAGGTGAGAGCATGCACTG 58.350 55.000 22.85 0.00 35.43 3.66
396 417 0.539051 GGTAGGTGAGAGCATGCACT 59.461 55.000 21.98 19.96 35.43 4.40
397 418 0.807667 CGGTAGGTGAGAGCATGCAC 60.808 60.000 21.98 14.59 0.00 4.57
399 420 0.528684 GACGGTAGGTGAGAGCATGC 60.529 60.000 10.51 10.51 0.00 4.06
400 421 0.248661 CGACGGTAGGTGAGAGCATG 60.249 60.000 0.00 0.00 0.00 4.06
401 422 1.384989 CCGACGGTAGGTGAGAGCAT 61.385 60.000 5.48 0.00 0.00 3.79
403 424 2.772691 CCCGACGGTAGGTGAGAGC 61.773 68.421 13.94 0.00 0.00 4.09
404 425 2.772691 GCCCGACGGTAGGTGAGAG 61.773 68.421 13.94 0.00 0.00 3.20
406 427 3.066190 TGCCCGACGGTAGGTGAG 61.066 66.667 13.94 0.00 0.00 3.51
408 429 4.446413 GGTGCCCGACGGTAGGTG 62.446 72.222 13.94 0.00 0.00 4.00
411 432 2.125673 CAAGGTGCCCGACGGTAG 60.126 66.667 13.94 0.00 0.00 3.18
412 433 2.918802 ACAAGGTGCCCGACGGTA 60.919 61.111 13.94 0.00 0.00 4.02
413 434 4.309950 GACAAGGTGCCCGACGGT 62.310 66.667 13.94 0.00 0.00 4.83
425 446 2.353406 CCTGTACAACCCTACCGACAAG 60.353 54.545 0.00 0.00 0.00 3.16
426 447 1.619827 CCTGTACAACCCTACCGACAA 59.380 52.381 0.00 0.00 0.00 3.18
427 448 1.259609 CCTGTACAACCCTACCGACA 58.740 55.000 0.00 0.00 0.00 4.35
428 449 0.108472 GCCTGTACAACCCTACCGAC 60.108 60.000 0.00 0.00 0.00 4.79
429 450 0.251922 AGCCTGTACAACCCTACCGA 60.252 55.000 0.00 0.00 0.00 4.69
430 451 1.135721 GTAGCCTGTACAACCCTACCG 59.864 57.143 12.70 0.00 0.00 4.02
432 453 1.135721 CGGTAGCCTGTACAACCCTAC 59.864 57.143 8.54 11.84 0.00 3.18
434 455 1.896122 GCGGTAGCCTGTACAACCCT 61.896 60.000 8.54 2.60 37.42 4.34
435 456 1.449070 GCGGTAGCCTGTACAACCC 60.449 63.158 8.54 0.00 37.42 4.11
436 457 4.196965 GCGGTAGCCTGTACAACC 57.803 61.111 4.60 4.60 37.42 3.77
446 467 1.521681 CAAGTAGGCTGGCGGTAGC 60.522 63.158 0.00 0.00 42.94 3.58
447 468 0.179108 GTCAAGTAGGCTGGCGGTAG 60.179 60.000 0.00 0.00 0.00 3.18
448 469 1.895238 GTCAAGTAGGCTGGCGGTA 59.105 57.895 0.00 0.00 0.00 4.02
449 470 2.663196 GTCAAGTAGGCTGGCGGT 59.337 61.111 0.00 0.00 0.00 5.68
450 471 2.509336 CGTCAAGTAGGCTGGCGG 60.509 66.667 0.00 0.00 0.00 6.13
451 472 1.940883 TACCGTCAAGTAGGCTGGCG 61.941 60.000 0.00 0.00 0.00 5.69
452 473 0.179108 CTACCGTCAAGTAGGCTGGC 60.179 60.000 0.00 0.00 36.81 4.85
458 479 1.553706 ACACCCCTACCGTCAAGTAG 58.446 55.000 0.00 0.00 39.60 2.57
459 480 2.014010 AACACCCCTACCGTCAAGTA 57.986 50.000 0.00 0.00 0.00 2.24
461 482 1.609841 GGAAACACCCCTACCGTCAAG 60.610 57.143 0.00 0.00 0.00 3.02
464 485 1.205655 GTAGGAAACACCCCTACCGTC 59.794 57.143 7.86 0.00 46.52 4.79
465 486 1.269958 GTAGGAAACACCCCTACCGT 58.730 55.000 7.86 0.00 46.52 4.83
470 491 2.599757 GGCGGTAGGAAACACCCCT 61.600 63.158 0.00 0.00 40.05 4.79
471 492 2.045634 GGCGGTAGGAAACACCCC 60.046 66.667 0.00 0.00 40.05 4.95
472 493 0.958876 CTTGGCGGTAGGAAACACCC 60.959 60.000 0.00 0.00 40.05 4.61
473 494 0.958876 CCTTGGCGGTAGGAAACACC 60.959 60.000 0.00 0.00 34.56 4.16
474 495 0.250597 ACCTTGGCGGTAGGAAACAC 60.251 55.000 7.07 0.00 46.73 3.32
475 496 2.147695 ACCTTGGCGGTAGGAAACA 58.852 52.632 7.07 0.00 46.73 2.83
488 509 2.550699 TATTGCGGCCAGGGACCTTG 62.551 60.000 2.24 0.00 0.00 3.61
489 510 2.270874 CTATTGCGGCCAGGGACCTT 62.271 60.000 2.24 0.00 0.00 3.50
490 511 2.690881 TATTGCGGCCAGGGACCT 60.691 61.111 2.24 0.00 0.00 3.85
492 513 1.523938 GTCTATTGCGGCCAGGGAC 60.524 63.158 2.24 0.00 0.00 4.46
494 515 1.227674 GAGTCTATTGCGGCCAGGG 60.228 63.158 2.24 0.00 0.00 4.45
495 516 0.531532 CAGAGTCTATTGCGGCCAGG 60.532 60.000 2.24 0.00 0.00 4.45
496 517 0.461548 TCAGAGTCTATTGCGGCCAG 59.538 55.000 2.24 0.00 0.00 4.85
497 518 0.175760 GTCAGAGTCTATTGCGGCCA 59.824 55.000 2.24 0.00 0.00 5.36
498 519 0.175760 TGTCAGAGTCTATTGCGGCC 59.824 55.000 0.00 0.00 0.00 6.13
499 520 1.134965 ACTGTCAGAGTCTATTGCGGC 60.135 52.381 6.91 0.00 0.00 6.53
501 522 3.367607 GCTACTGTCAGAGTCTATTGCG 58.632 50.000 6.91 0.00 35.96 4.85
502 523 3.065510 TCGCTACTGTCAGAGTCTATTGC 59.934 47.826 6.91 0.00 35.96 3.56
503 524 4.884458 TCGCTACTGTCAGAGTCTATTG 57.116 45.455 6.91 0.00 35.96 1.90
504 525 5.163602 CCTTTCGCTACTGTCAGAGTCTATT 60.164 44.000 6.91 0.00 35.96 1.73
506 527 3.690139 CCTTTCGCTACTGTCAGAGTCTA 59.310 47.826 6.91 0.00 35.96 2.59
507 528 2.490115 CCTTTCGCTACTGTCAGAGTCT 59.510 50.000 6.91 0.00 35.96 3.24
510 531 1.737363 GCCCTTTCGCTACTGTCAGAG 60.737 57.143 6.91 1.03 0.00 3.35
511 532 0.246635 GCCCTTTCGCTACTGTCAGA 59.753 55.000 6.91 0.00 0.00 3.27
512 533 0.741221 GGCCCTTTCGCTACTGTCAG 60.741 60.000 0.00 0.00 0.00 3.51
513 534 1.295423 GGCCCTTTCGCTACTGTCA 59.705 57.895 0.00 0.00 0.00 3.58
514 535 0.741221 CTGGCCCTTTCGCTACTGTC 60.741 60.000 0.00 0.00 0.00 3.51
515 536 1.192146 TCTGGCCCTTTCGCTACTGT 61.192 55.000 0.00 0.00 0.00 3.55
518 539 0.533085 GGATCTGGCCCTTTCGCTAC 60.533 60.000 0.00 0.00 0.00 3.58
519 540 1.696097 GGGATCTGGCCCTTTCGCTA 61.696 60.000 0.00 0.00 45.12 4.26
521 542 2.517166 GGGATCTGGCCCTTTCGC 60.517 66.667 0.00 0.00 45.12 4.70
522 543 2.203070 CGGGATCTGGCCCTTTCG 60.203 66.667 0.00 0.00 46.44 3.46
523 544 0.034477 TTTCGGGATCTGGCCCTTTC 60.034 55.000 0.00 0.00 46.44 2.62
524 545 0.631212 ATTTCGGGATCTGGCCCTTT 59.369 50.000 0.00 0.00 46.44 3.11
525 546 0.631212 AATTTCGGGATCTGGCCCTT 59.369 50.000 0.00 0.00 46.44 3.95
526 547 0.631212 AAATTTCGGGATCTGGCCCT 59.369 50.000 0.00 0.00 46.44 5.19
527 548 1.485124 AAAATTTCGGGATCTGGCCC 58.515 50.000 0.00 0.00 45.10 5.80
528 549 3.445805 TGTAAAAATTTCGGGATCTGGCC 59.554 43.478 0.00 0.00 0.00 5.36
529 550 4.712122 TGTAAAAATTTCGGGATCTGGC 57.288 40.909 0.00 0.00 0.00 4.85
530 551 6.687604 AGTTTGTAAAAATTTCGGGATCTGG 58.312 36.000 0.00 0.00 0.00 3.86
532 553 8.857694 TCTAGTTTGTAAAAATTTCGGGATCT 57.142 30.769 0.00 0.00 0.00 2.75
534 555 9.238368 TGATCTAGTTTGTAAAAATTTCGGGAT 57.762 29.630 0.00 0.00 0.00 3.85
535 556 8.624367 TGATCTAGTTTGTAAAAATTTCGGGA 57.376 30.769 0.00 0.00 0.00 5.14
536 557 8.726988 TCTGATCTAGTTTGTAAAAATTTCGGG 58.273 33.333 0.00 0.00 0.00 5.14
561 582 9.631452 CCCTTTTTCTGAAAGTTAATCAAGATC 57.369 33.333 2.75 0.00 33.76 2.75
564 585 8.413229 TGACCCTTTTTCTGAAAGTTAATCAAG 58.587 33.333 2.75 2.82 33.76 3.02
566 587 7.889873 TGACCCTTTTTCTGAAAGTTAATCA 57.110 32.000 2.75 4.17 33.76 2.57
567 588 9.594478 TTTTGACCCTTTTTCTGAAAGTTAATC 57.406 29.630 2.75 1.84 33.76 1.75
569 590 8.368668 TGTTTTGACCCTTTTTCTGAAAGTTAA 58.631 29.630 2.75 0.00 33.76 2.01
570 591 7.815549 GTGTTTTGACCCTTTTTCTGAAAGTTA 59.184 33.333 2.75 0.00 33.76 2.24
573 594 5.288472 CGTGTTTTGACCCTTTTTCTGAAAG 59.712 40.000 2.75 0.00 0.00 2.62
574 595 5.047943 TCGTGTTTTGACCCTTTTTCTGAAA 60.048 36.000 0.00 0.00 0.00 2.69
575 596 4.459685 TCGTGTTTTGACCCTTTTTCTGAA 59.540 37.500 0.00 0.00 0.00 3.02
577 598 4.364415 TCGTGTTTTGACCCTTTTTCTG 57.636 40.909 0.00 0.00 0.00 3.02
578 599 5.394224 TTTCGTGTTTTGACCCTTTTTCT 57.606 34.783 0.00 0.00 0.00 2.52
579 600 6.656314 AATTTCGTGTTTTGACCCTTTTTC 57.344 33.333 0.00 0.00 0.00 2.29
580 601 7.201574 GCTAAATTTCGTGTTTTGACCCTTTTT 60.202 33.333 0.00 0.00 0.00 1.94
581 602 6.256975 GCTAAATTTCGTGTTTTGACCCTTTT 59.743 34.615 0.00 0.00 0.00 2.27
584 605 4.261867 GGCTAAATTTCGTGTTTTGACCCT 60.262 41.667 0.00 0.00 0.00 4.34
585 606 3.985279 GGCTAAATTTCGTGTTTTGACCC 59.015 43.478 0.00 0.00 0.00 4.46
586 607 3.985279 GGGCTAAATTTCGTGTTTTGACC 59.015 43.478 0.00 0.00 33.51 4.02
587 608 3.985279 GGGGCTAAATTTCGTGTTTTGAC 59.015 43.478 0.00 0.00 0.00 3.18
589 610 3.322369 GGGGGCTAAATTTCGTGTTTTG 58.678 45.455 0.00 0.00 0.00 2.44
590 611 2.029739 CGGGGGCTAAATTTCGTGTTTT 60.030 45.455 0.00 0.00 0.00 2.43
592 613 1.170442 CGGGGGCTAAATTTCGTGTT 58.830 50.000 0.00 0.00 0.00 3.32
594 615 0.393267 TCCGGGGGCTAAATTTCGTG 60.393 55.000 0.00 0.00 0.00 4.35
595 616 0.328926 TTCCGGGGGCTAAATTTCGT 59.671 50.000 0.00 0.00 0.00 3.85
596 617 0.736636 GTTCCGGGGGCTAAATTTCG 59.263 55.000 0.00 0.00 0.00 3.46
597 618 1.842052 TGTTCCGGGGGCTAAATTTC 58.158 50.000 0.00 0.00 0.00 2.17
599 620 1.569072 AGATGTTCCGGGGGCTAAATT 59.431 47.619 0.00 0.00 0.00 1.82
600 621 1.143073 GAGATGTTCCGGGGGCTAAAT 59.857 52.381 0.00 0.00 0.00 1.40
601 622 0.544697 GAGATGTTCCGGGGGCTAAA 59.455 55.000 0.00 0.00 0.00 1.85
603 624 1.048724 CAGAGATGTTCCGGGGGCTA 61.049 60.000 0.00 0.00 0.00 3.93
605 626 2.190578 CAGAGATGTTCCGGGGGC 59.809 66.667 0.00 0.00 0.00 5.80
606 627 2.190578 GCAGAGATGTTCCGGGGG 59.809 66.667 0.00 0.00 0.00 5.40
607 628 1.144936 GAGCAGAGATGTTCCGGGG 59.855 63.158 0.00 0.00 0.00 5.73
608 629 1.144936 GGAGCAGAGATGTTCCGGG 59.855 63.158 0.00 0.00 29.86 5.73
609 630 0.250234 TTGGAGCAGAGATGTTCCGG 59.750 55.000 0.00 0.00 41.33 5.14
610 631 1.066573 AGTTGGAGCAGAGATGTTCCG 60.067 52.381 6.64 0.00 41.33 4.30
617 638 2.902486 AGTTGATCAGTTGGAGCAGAGA 59.098 45.455 0.00 0.00 43.86 3.10
643 1371 4.020128 AGCCTAAGAGAACAAAATCGAGGT 60.020 41.667 0.00 0.00 0.00 3.85
644 1372 4.508662 AGCCTAAGAGAACAAAATCGAGG 58.491 43.478 0.00 0.00 0.00 4.63
647 1375 7.760340 AGTTACTAGCCTAAGAGAACAAAATCG 59.240 37.037 0.00 0.00 0.00 3.34
663 1391 0.535797 AGGCCGACAAGTTACTAGCC 59.464 55.000 0.00 0.00 39.25 3.93
664 1392 1.203994 TCAGGCCGACAAGTTACTAGC 59.796 52.381 0.00 0.00 0.00 3.42
715 1443 7.861372 ACGCACAACAACTAGATATATGTAGAC 59.139 37.037 20.62 0.00 0.00 2.59
723 1455 2.936498 GGCACGCACAACAACTAGATAT 59.064 45.455 0.00 0.00 0.00 1.63
773 1512 4.637483 TGCAGCTACCATTAAGCATTTC 57.363 40.909 0.00 0.00 42.62 2.17
808 1547 0.520827 CCTCGTCGTGTAGAAGCGTC 60.521 60.000 0.00 0.00 0.00 5.19
815 1554 1.226974 CATGGGCCTCGTCGTGTAG 60.227 63.158 4.53 0.00 0.00 2.74
907 3691 1.667830 GGCGCGCATGGCTATCTAA 60.668 57.895 34.42 0.00 40.44 2.10
1241 4049 2.202236 GAGCCTGTCAAGCCCATCCA 62.202 60.000 0.00 0.00 0.00 3.41
1277 4085 4.415332 CGCGGTAGCACGACAGGT 62.415 66.667 0.00 0.00 45.49 4.00
1358 4166 4.263572 CCCATATTCCGCCGGCCA 62.264 66.667 23.46 4.32 0.00 5.36
1821 4632 2.419739 GGAGAGGGAGAGCACGTCC 61.420 68.421 0.00 0.00 0.00 4.79
1912 4723 0.389948 GCCGAGGTTGACACGAAGAT 60.390 55.000 0.00 0.00 0.00 2.40
1951 4762 3.122971 GTTGCGAAGGTACCCGGC 61.123 66.667 8.74 10.36 0.00 6.13
1971 4782 4.980805 GTGAGCACCCACGGCGAA 62.981 66.667 16.62 0.00 36.08 4.70
2277 5091 2.928116 CGGAAATGGGAAGTTCTCGTAC 59.072 50.000 0.00 0.00 0.00 3.67
2373 5187 1.593209 GGTCACCGCGAACTTGACA 60.593 57.895 22.66 0.00 41.27 3.58
2374 5188 2.654912 CGGTCACCGCGAACTTGAC 61.655 63.158 8.23 14.14 41.17 3.18
2691 5513 4.012895 GTGTTGTCCACCGCGCTG 62.013 66.667 5.56 0.00 38.18 5.18
2778 5603 2.091102 AACGGTTCGGGTCGATGTGT 62.091 55.000 0.00 0.00 35.23 3.72
2802 5627 4.326227 TACACCAGGCCCGGGTCT 62.326 66.667 25.80 25.80 36.19 3.85
2955 5780 3.419915 GTTGTAGTCGAAGAACGCGATA 58.580 45.455 15.93 0.00 39.69 2.92
2995 5820 2.826702 GTTGGTCACGGTCCTGGT 59.173 61.111 0.00 0.00 0.00 4.00
3094 5919 2.726691 CGTGCTTACCGCCGAACAG 61.727 63.158 0.00 0.00 38.05 3.16
3201 6026 0.951525 CCGTGTATTTGCCGGTGTCA 60.952 55.000 1.90 0.00 37.00 3.58
3275 6100 3.261643 TCACTAGTTGGATCTGTGCACAT 59.738 43.478 22.00 6.27 0.00 3.21
3314 6211 6.851318 TCATTATCCATACCACATGACCATT 58.149 36.000 0.00 0.00 0.00 3.16
3320 6217 9.467258 GAAACATTTCATTATCCATACCACATG 57.533 33.333 0.00 0.00 37.15 3.21
3464 6382 9.278734 GTTTTACTTTGAGAGAAACTTCTTGTG 57.721 33.333 0.00 0.00 37.73 3.33
3507 6662 1.223487 GGCGGGGCACAAGATTCTA 59.777 57.895 0.00 0.00 0.00 2.10
3557 6712 3.578716 CCTCCATATCTTGGTATGACCGT 59.421 47.826 2.71 0.00 46.52 4.83
3644 6823 0.390340 CCCCGATCGACATGCCATAG 60.390 60.000 18.66 0.00 0.00 2.23
3646 6825 1.983119 AACCCCGATCGACATGCCAT 61.983 55.000 18.66 0.00 0.00 4.40
3695 6874 7.827729 TCTTTGATCATGTCAGATGAAGTTGAT 59.172 33.333 0.00 4.14 38.29 2.57
3780 6959 0.521291 GTTGCTGTCGGCTATTGCAA 59.479 50.000 0.00 0.00 42.39 4.08
3795 6974 4.329545 TCTCCTGGGTGGCGTTGC 62.330 66.667 0.00 0.00 35.26 4.17
3807 6986 4.057428 GGCGCACGACACTCTCCT 62.057 66.667 10.83 0.00 0.00 3.69
3839 7018 5.599732 CCAGTCTTCAGATCTGGTAAGATG 58.400 45.833 22.72 19.93 43.48 2.90
3915 7297 6.521151 AATTTGTTTATGCTCTTCCTCCAG 57.479 37.500 0.00 0.00 0.00 3.86
3932 7314 3.434637 GCGCCACATCGAAATAATTTGT 58.565 40.909 0.00 0.00 0.00 2.83
3972 7354 5.333645 GGTGTAATATGCTTTCAGAGATGCG 60.334 44.000 0.00 0.00 0.00 4.73
4113 7496 2.356844 GGGGATTAGGAGGCGACTTTTT 60.357 50.000 0.00 0.00 44.43 1.94
4128 7511 4.018050 AGAATAGTCAAAGCACAGGGGATT 60.018 41.667 0.00 0.00 0.00 3.01
4130 7513 2.912956 AGAATAGTCAAAGCACAGGGGA 59.087 45.455 0.00 0.00 0.00 4.81
4132 7515 3.942829 TGAGAATAGTCAAAGCACAGGG 58.057 45.455 0.00 0.00 0.00 4.45
4192 7575 6.652062 TGTATATCATTATGCAGCACTGGAAG 59.348 38.462 0.00 0.00 42.29 3.46
4193 7576 6.532826 TGTATATCATTATGCAGCACTGGAA 58.467 36.000 0.00 0.00 33.77 3.53
4194 7577 6.112927 TGTATATCATTATGCAGCACTGGA 57.887 37.500 0.00 0.00 34.81 3.86
4195 7578 6.806388 TTGTATATCATTATGCAGCACTGG 57.194 37.500 0.00 0.00 32.88 4.00
4196 7579 8.091385 TCTTTGTATATCATTATGCAGCACTG 57.909 34.615 0.00 0.00 32.88 3.66
4197 7580 8.681486 TTCTTTGTATATCATTATGCAGCACT 57.319 30.769 0.00 0.00 32.88 4.40
4209 7592 9.725019 GTCATCACCCATATTCTTTGTATATCA 57.275 33.333 0.00 0.00 0.00 2.15
4210 7593 9.725019 TGTCATCACCCATATTCTTTGTATATC 57.275 33.333 0.00 0.00 0.00 1.63
4213 7596 9.730705 CTATGTCATCACCCATATTCTTTGTAT 57.269 33.333 0.00 0.00 0.00 2.29
4214 7597 7.661437 GCTATGTCATCACCCATATTCTTTGTA 59.339 37.037 0.00 0.00 0.00 2.41
4215 7598 6.488006 GCTATGTCATCACCCATATTCTTTGT 59.512 38.462 0.00 0.00 0.00 2.83
4216 7599 6.713903 AGCTATGTCATCACCCATATTCTTTG 59.286 38.462 0.00 0.00 0.00 2.77
4217 7600 6.845908 AGCTATGTCATCACCCATATTCTTT 58.154 36.000 0.00 0.00 0.00 2.52
4218 7601 6.445451 AGCTATGTCATCACCCATATTCTT 57.555 37.500 0.00 0.00 0.00 2.52
4219 7602 6.445451 AAGCTATGTCATCACCCATATTCT 57.555 37.500 0.00 0.00 0.00 2.40
4220 7603 7.390027 ACTAAGCTATGTCATCACCCATATTC 58.610 38.462 0.00 0.00 0.00 1.75
4221 7604 7.321717 ACTAAGCTATGTCATCACCCATATT 57.678 36.000 0.00 0.00 0.00 1.28
4222 7605 6.942163 ACTAAGCTATGTCATCACCCATAT 57.058 37.500 0.00 0.00 0.00 1.78
4223 7606 7.010771 AGTACTAAGCTATGTCATCACCCATA 58.989 38.462 0.00 0.00 0.00 2.74
4224 7607 5.841237 AGTACTAAGCTATGTCATCACCCAT 59.159 40.000 0.00 0.00 0.00 4.00
4225 7608 5.069119 CAGTACTAAGCTATGTCATCACCCA 59.931 44.000 0.00 0.00 0.00 4.51
4226 7609 5.069251 ACAGTACTAAGCTATGTCATCACCC 59.931 44.000 0.00 0.00 0.00 4.61
4227 7610 6.150396 ACAGTACTAAGCTATGTCATCACC 57.850 41.667 0.00 0.00 0.00 4.02
4228 7611 7.258441 TCAACAGTACTAAGCTATGTCATCAC 58.742 38.462 0.00 0.00 0.00 3.06
4229 7612 7.339466 TCTCAACAGTACTAAGCTATGTCATCA 59.661 37.037 0.00 0.00 0.00 3.07
4230 7613 7.646130 GTCTCAACAGTACTAAGCTATGTCATC 59.354 40.741 0.00 0.00 0.00 2.92
4231 7614 7.122799 TGTCTCAACAGTACTAAGCTATGTCAT 59.877 37.037 0.00 0.00 0.00 3.06
4232 7615 6.433093 TGTCTCAACAGTACTAAGCTATGTCA 59.567 38.462 0.00 0.00 0.00 3.58
4233 7616 6.748198 GTGTCTCAACAGTACTAAGCTATGTC 59.252 42.308 0.00 0.00 35.64 3.06
4234 7617 6.208797 TGTGTCTCAACAGTACTAAGCTATGT 59.791 38.462 0.00 0.00 35.64 2.29
4235 7618 6.621613 TGTGTCTCAACAGTACTAAGCTATG 58.378 40.000 0.00 0.00 35.64 2.23
4236 7619 6.835819 TGTGTCTCAACAGTACTAAGCTAT 57.164 37.500 0.00 0.00 35.64 2.97
4237 7620 6.644248 TTGTGTCTCAACAGTACTAAGCTA 57.356 37.500 0.00 0.00 35.64 3.32
4238 7621 5.531122 TTGTGTCTCAACAGTACTAAGCT 57.469 39.130 0.00 0.00 35.64 3.74
4239 7622 6.479001 TCTTTTGTGTCTCAACAGTACTAAGC 59.521 38.462 0.00 0.00 35.87 3.09
4240 7623 7.707035 ACTCTTTTGTGTCTCAACAGTACTAAG 59.293 37.037 0.00 0.00 35.87 2.18
4241 7624 7.553334 ACTCTTTTGTGTCTCAACAGTACTAA 58.447 34.615 0.00 0.00 35.87 2.24
4242 7625 7.108841 ACTCTTTTGTGTCTCAACAGTACTA 57.891 36.000 0.00 0.00 35.87 1.82
4243 7626 5.978814 ACTCTTTTGTGTCTCAACAGTACT 58.021 37.500 0.00 0.00 35.87 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.