Multiple sequence alignment - TraesCS7D01G474400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G474400 chr7D 100.000 2636 0 0 1 2636 586833302 586830667 0.000000e+00 4868.0
1 TraesCS7D01G474400 chr7D 81.026 1618 244 45 927 2527 586754274 586755845 0.000000e+00 1229.0
2 TraesCS7D01G474400 chr7D 80.336 1607 221 43 920 2487 586745698 586747248 0.000000e+00 1129.0
3 TraesCS7D01G474400 chr7D 75.810 1513 275 52 1002 2472 586700213 586701676 0.000000e+00 682.0
4 TraesCS7D01G474400 chr7D 92.012 338 20 3 208 539 603805346 603805682 3.970000e-128 468.0
5 TraesCS7D01G474400 chr7D 90.196 255 17 6 544 794 232930302 232930552 2.530000e-85 326.0
6 TraesCS7D01G474400 chr7D 87.160 257 26 5 543 794 561956468 561956214 4.290000e-73 285.0
7 TraesCS7D01G474400 chr7A 81.474 1587 236 35 966 2530 677838965 677840515 0.000000e+00 1249.0
8 TraesCS7D01G474400 chr7A 77.240 1507 273 46 1003 2479 678146203 678144737 0.000000e+00 819.0
9 TraesCS7D01G474400 chr7A 76.653 1482 276 38 1002 2456 677825336 677826774 0.000000e+00 756.0
10 TraesCS7D01G474400 chr7A 78.529 1169 185 33 1002 2154 677995478 677994360 0.000000e+00 708.0
11 TraesCS7D01G474400 chr7A 75.575 1564 301 48 946 2479 677723778 677722266 0.000000e+00 697.0
12 TraesCS7D01G474400 chr7A 89.275 345 30 6 208 546 6660494 6660151 2.430000e-115 425.0
13 TraesCS7D01G474400 chr7A 86.719 256 27 5 544 794 6659220 6658967 7.190000e-71 278.0
14 TraesCS7D01G474400 chr7A 93.865 163 9 1 2430 2592 677999475 677999314 7.290000e-61 244.0
15 TraesCS7D01G474400 chr7A 96.479 142 4 1 2289 2430 678004972 678004832 1.580000e-57 233.0
16 TraesCS7D01G474400 chr7A 89.831 118 11 1 1 117 657376531 657376648 1.630000e-32 150.0
17 TraesCS7D01G474400 chr7A 93.333 75 4 1 2213 2286 678005208 678005134 2.770000e-20 110.0
18 TraesCS7D01G474400 chr7A 90.141 71 3 3 2419 2487 677826860 677826928 3.610000e-14 89.8
19 TraesCS7D01G474400 chr7B 77.637 1583 277 41 924 2479 657663356 657661824 0.000000e+00 891.0
20 TraesCS7D01G474400 chr7B 83.040 967 134 18 1577 2530 657339840 657340789 0.000000e+00 850.0
21 TraesCS7D01G474400 chr7B 76.174 1490 275 39 1002 2466 657084641 657086075 0.000000e+00 712.0
22 TraesCS7D01G474400 chr7B 77.108 1328 230 44 910 2220 656529674 656528404 0.000000e+00 701.0
23 TraesCS7D01G474400 chr7B 76.274 1256 260 22 946 2184 656552211 656550977 3.700000e-178 634.0
24 TraesCS7D01G474400 chr7B 79.291 874 150 17 968 1819 657313541 657314405 1.360000e-162 582.0
25 TraesCS7D01G474400 chr7B 81.514 568 89 8 966 1531 657338812 657339365 1.110000e-123 453.0
26 TraesCS7D01G474400 chr7B 83.015 471 60 10 1882 2340 657567844 657568306 2.440000e-110 409.0
27 TraesCS7D01G474400 chr7B 87.611 226 27 1 979 1203 657317996 657318221 7.240000e-66 261.0
28 TraesCS7D01G474400 chr7B 88.718 195 22 0 1002 1196 657420548 657420742 3.390000e-59 239.0
29 TraesCS7D01G474400 chr7B 96.471 85 2 1 2413 2497 657661426 657661343 3.540000e-29 139.0
30 TraesCS7D01G474400 chr5D 90.882 340 27 3 208 546 255561919 255562255 1.110000e-123 453.0
31 TraesCS7D01G474400 chr5D 90.801 337 21 8 208 537 260845302 260844969 2.410000e-120 442.0
32 TraesCS7D01G474400 chr5D 90.533 338 24 6 208 538 291520414 291520750 8.660000e-120 440.0
33 TraesCS7D01G474400 chr4D 90.202 347 27 5 206 546 121821503 121821158 1.860000e-121 446.0
34 TraesCS7D01G474400 chr3D 90.774 336 23 7 208 537 175255099 175255432 2.410000e-120 442.0
35 TraesCS7D01G474400 chr3D 89.337 347 29 4 206 546 552726054 552725710 1.870000e-116 429.0
36 TraesCS7D01G474400 chr3D 89.020 255 20 5 544 793 552723519 552723268 2.550000e-80 309.0
37 TraesCS7D01G474400 chr6D 89.941 338 25 5 208 537 454174043 454174379 6.740000e-116 427.0
38 TraesCS7D01G474400 chr6D 88.095 252 22 5 544 790 454176553 454176801 2.570000e-75 292.0
39 TraesCS7D01G474400 chrUn 88.142 253 19 9 544 790 110940900 110940653 9.230000e-75 291.0
40 TraesCS7D01G474400 chr2A 88.085 235 27 1 544 778 698816586 698816353 7.190000e-71 278.0
41 TraesCS7D01G474400 chr1A 86.561 253 27 6 542 790 458917565 458917814 3.340000e-69 272.0
42 TraesCS7D01G474400 chr1A 92.174 115 9 0 1 115 35135114 35135228 2.100000e-36 163.0
43 TraesCS7D01G474400 chr5A 86.454 251 27 6 544 790 538309334 538309087 4.320000e-68 268.0
44 TraesCS7D01G474400 chr5A 77.160 162 33 4 1020 1179 691821095 691821254 1.000000e-14 91.6
45 TraesCS7D01G474400 chr6A 91.071 112 7 2 7 115 119767838 119767727 5.880000e-32 148.0
46 TraesCS7D01G474400 chr6B 90.654 107 9 1 7 112 554344584 554344690 9.840000e-30 141.0
47 TraesCS7D01G474400 chr6B 91.000 100 7 2 16 114 678176344 678176246 1.650000e-27 134.0
48 TraesCS7D01G474400 chr1D 90.000 110 10 1 7 115 467126827 467126936 9.840000e-30 141.0
49 TraesCS7D01G474400 chr4B 76.786 168 35 4 1020 1185 654202039 654202204 1.000000e-14 91.6
50 TraesCS7D01G474400 chr4A 79.508 122 23 2 1021 1141 729819317 729819437 4.670000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G474400 chr7D 586830667 586833302 2635 True 4868.0 4868 100.0000 1 2636 1 chr7D.!!$R2 2635
1 TraesCS7D01G474400 chr7D 586754274 586755845 1571 False 1229.0 1229 81.0260 927 2527 1 chr7D.!!$F4 1600
2 TraesCS7D01G474400 chr7D 586745698 586747248 1550 False 1129.0 1129 80.3360 920 2487 1 chr7D.!!$F3 1567
3 TraesCS7D01G474400 chr7D 586700213 586701676 1463 False 682.0 682 75.8100 1002 2472 1 chr7D.!!$F2 1470
4 TraesCS7D01G474400 chr7A 677838965 677840515 1550 False 1249.0 1249 81.4740 966 2530 1 chr7A.!!$F2 1564
5 TraesCS7D01G474400 chr7A 678144737 678146203 1466 True 819.0 819 77.2400 1003 2479 1 chr7A.!!$R2 1476
6 TraesCS7D01G474400 chr7A 677722266 677723778 1512 True 697.0 697 75.5750 946 2479 1 chr7A.!!$R1 1533
7 TraesCS7D01G474400 chr7A 677994360 677999475 5115 True 476.0 708 86.1970 1002 2592 2 chr7A.!!$R4 1590
8 TraesCS7D01G474400 chr7A 677825336 677826928 1592 False 422.9 756 83.3970 1002 2487 2 chr7A.!!$F3 1485
9 TraesCS7D01G474400 chr7A 6658967 6660494 1527 True 351.5 425 87.9970 208 794 2 chr7A.!!$R3 586
10 TraesCS7D01G474400 chr7B 657084641 657086075 1434 False 712.0 712 76.1740 1002 2466 1 chr7B.!!$F1 1464
11 TraesCS7D01G474400 chr7B 656528404 656529674 1270 True 701.0 701 77.1080 910 2220 1 chr7B.!!$R1 1310
12 TraesCS7D01G474400 chr7B 657338812 657340789 1977 False 651.5 850 82.2770 966 2530 2 chr7B.!!$F5 1564
13 TraesCS7D01G474400 chr7B 656550977 656552211 1234 True 634.0 634 76.2740 946 2184 1 chr7B.!!$R2 1238
14 TraesCS7D01G474400 chr7B 657661343 657663356 2013 True 515.0 891 87.0540 924 2497 2 chr7B.!!$R3 1573
15 TraesCS7D01G474400 chr7B 657313541 657318221 4680 False 421.5 582 83.4510 968 1819 2 chr7B.!!$F4 851
16 TraesCS7D01G474400 chr3D 552723268 552726054 2786 True 369.0 429 89.1785 206 793 2 chr3D.!!$R1 587
17 TraesCS7D01G474400 chr6D 454174043 454176801 2758 False 359.5 427 89.0180 208 790 2 chr6D.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
896 3195 0.106519 CCCCATCACCACCTCATTCC 60.107 60.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 5438 0.10104 AATGCACGGATTTGCCATCG 59.899 50.0 0.0 0.0 42.25 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.883142 AGGATTAAACAGAAAAACATGAAAACA 57.117 25.926 0.00 0.00 0.00 2.83
31 32 9.636965 GATTAAACAGAAAAACATGAAAACAGC 57.363 29.630 0.00 0.00 0.00 4.40
32 33 8.539770 TTAAACAGAAAAACATGAAAACAGCA 57.460 26.923 0.00 0.00 0.00 4.41
33 34 6.407475 AACAGAAAAACATGAAAACAGCAC 57.593 33.333 0.00 0.00 0.00 4.40
37 38 6.477688 CAGAAAAACATGAAAACAGCACAGAT 59.522 34.615 0.00 0.00 0.00 2.90
38 39 6.698766 AGAAAAACATGAAAACAGCACAGATC 59.301 34.615 0.00 0.00 0.00 2.75
39 40 5.779529 AAACATGAAAACAGCACAGATCT 57.220 34.783 0.00 0.00 0.00 2.75
40 41 5.368256 AACATGAAAACAGCACAGATCTC 57.632 39.130 0.00 0.00 0.00 2.75
41 42 4.392047 ACATGAAAACAGCACAGATCTCA 58.608 39.130 0.00 0.00 0.00 3.27
42 43 4.823442 ACATGAAAACAGCACAGATCTCAA 59.177 37.500 0.00 0.00 0.00 3.02
43 44 5.048921 ACATGAAAACAGCACAGATCTCAAG 60.049 40.000 0.00 0.00 0.00 3.02
45 46 1.818642 AACAGCACAGATCTCAAGGC 58.181 50.000 0.00 0.00 0.00 4.35
46 47 0.689055 ACAGCACAGATCTCAAGGCA 59.311 50.000 0.00 0.00 0.00 4.75
47 48 1.085091 CAGCACAGATCTCAAGGCAC 58.915 55.000 0.00 0.00 0.00 5.01
48 49 0.689055 AGCACAGATCTCAAGGCACA 59.311 50.000 0.00 0.00 0.00 4.57
50 51 1.669779 GCACAGATCTCAAGGCACATC 59.330 52.381 0.00 0.00 0.00 3.06
52 53 1.911357 ACAGATCTCAAGGCACATCCA 59.089 47.619 0.00 0.00 37.29 3.41
54 55 2.681848 CAGATCTCAAGGCACATCCAAC 59.318 50.000 0.00 0.00 37.29 3.77
55 56 1.667724 GATCTCAAGGCACATCCAACG 59.332 52.381 0.00 0.00 37.29 4.10
56 57 0.684535 TCTCAAGGCACATCCAACGA 59.315 50.000 0.00 0.00 37.29 3.85
57 58 1.071542 TCTCAAGGCACATCCAACGAA 59.928 47.619 0.00 0.00 37.29 3.85
58 59 1.197721 CTCAAGGCACATCCAACGAAC 59.802 52.381 0.00 0.00 37.29 3.95
60 61 1.069022 CAAGGCACATCCAACGAACAG 60.069 52.381 0.00 0.00 37.29 3.16
62 63 1.202758 AGGCACATCCAACGAACAGAA 60.203 47.619 0.00 0.00 37.29 3.02
63 64 1.606668 GGCACATCCAACGAACAGAAA 59.393 47.619 0.00 0.00 34.01 2.52
64 65 2.034053 GGCACATCCAACGAACAGAAAA 59.966 45.455 0.00 0.00 34.01 2.29
65 66 3.305335 GGCACATCCAACGAACAGAAAAT 60.305 43.478 0.00 0.00 34.01 1.82
66 67 4.298332 GCACATCCAACGAACAGAAAATT 58.702 39.130 0.00 0.00 0.00 1.82
67 68 4.148696 GCACATCCAACGAACAGAAAATTG 59.851 41.667 0.00 0.00 0.00 2.32
68 69 5.518812 CACATCCAACGAACAGAAAATTGA 58.481 37.500 0.00 0.00 0.00 2.57
69 70 5.399301 CACATCCAACGAACAGAAAATTGAC 59.601 40.000 0.00 0.00 0.00 3.18
70 71 5.299279 ACATCCAACGAACAGAAAATTGACT 59.701 36.000 0.00 0.00 0.00 3.41
71 72 5.168526 TCCAACGAACAGAAAATTGACTG 57.831 39.130 9.60 9.60 39.65 3.51
73 74 4.970003 CCAACGAACAGAAAATTGACTGAC 59.030 41.667 15.80 9.79 37.54 3.51
75 76 4.196193 ACGAACAGAAAATTGACTGACCA 58.804 39.130 15.80 0.00 37.54 4.02
77 78 4.035091 CGAACAGAAAATTGACTGACCACA 59.965 41.667 15.80 0.00 37.54 4.17
79 80 5.913137 ACAGAAAATTGACTGACCACAAA 57.087 34.783 15.80 0.00 37.54 2.83
80 81 6.279513 ACAGAAAATTGACTGACCACAAAA 57.720 33.333 15.80 0.00 37.54 2.44
81 82 6.877236 ACAGAAAATTGACTGACCACAAAAT 58.123 32.000 15.80 0.00 37.54 1.82
82 83 8.006298 ACAGAAAATTGACTGACCACAAAATA 57.994 30.769 15.80 0.00 37.54 1.40
85 86 9.883142 AGAAAATTGACTGACCACAAAATAAAA 57.117 25.926 0.00 0.00 0.00 1.52
89 90 8.871686 ATTGACTGACCACAAAATAAAAAGTC 57.128 30.769 0.00 0.00 33.72 3.01
90 91 7.397892 TGACTGACCACAAAATAAAAAGTCA 57.602 32.000 0.00 0.00 39.21 3.41
91 92 7.831753 TGACTGACCACAAAATAAAAAGTCAA 58.168 30.769 0.00 0.00 38.73 3.18
92 93 7.757624 TGACTGACCACAAAATAAAAAGTCAAC 59.242 33.333 0.00 0.00 38.73 3.18
94 95 7.759433 ACTGACCACAAAATAAAAAGTCAACTG 59.241 33.333 0.00 0.00 32.82 3.16
95 96 7.831753 TGACCACAAAATAAAAAGTCAACTGA 58.168 30.769 0.00 0.00 30.35 3.41
96 97 7.757624 TGACCACAAAATAAAAAGTCAACTGAC 59.242 33.333 1.40 1.40 45.08 3.51
111 112 7.421530 GTCAACTGACTGAAATGTAGCTAAA 57.578 36.000 0.00 0.00 41.65 1.85
112 113 7.513968 GTCAACTGACTGAAATGTAGCTAAAG 58.486 38.462 0.00 0.00 41.65 1.85
114 115 7.171508 TCAACTGACTGAAATGTAGCTAAAGTG 59.828 37.037 0.00 0.00 0.00 3.16
115 116 6.525629 ACTGACTGAAATGTAGCTAAAGTGT 58.474 36.000 0.00 0.00 0.00 3.55
116 117 6.992715 ACTGACTGAAATGTAGCTAAAGTGTT 59.007 34.615 0.00 0.00 0.00 3.32
117 118 7.041780 ACTGACTGAAATGTAGCTAAAGTGTTG 60.042 37.037 0.00 0.00 0.00 3.33
118 119 6.989759 TGACTGAAATGTAGCTAAAGTGTTGA 59.010 34.615 0.00 0.00 0.00 3.18
119 120 7.171508 TGACTGAAATGTAGCTAAAGTGTTGAG 59.828 37.037 0.00 0.00 0.00 3.02
120 121 6.428159 ACTGAAATGTAGCTAAAGTGTTGAGG 59.572 38.462 0.00 0.00 0.00 3.86
122 123 3.762407 TGTAGCTAAAGTGTTGAGGCA 57.238 42.857 0.00 0.00 0.00 4.75
125 126 3.051081 AGCTAAAGTGTTGAGGCAGAG 57.949 47.619 0.00 0.00 0.00 3.35
126 127 1.466558 GCTAAAGTGTTGAGGCAGAGC 59.533 52.381 0.00 0.00 0.00 4.09
127 128 2.771089 CTAAAGTGTTGAGGCAGAGCA 58.229 47.619 0.00 0.00 0.00 4.26
128 129 2.057137 AAAGTGTTGAGGCAGAGCAA 57.943 45.000 0.00 0.00 0.00 3.91
129 130 1.602311 AAGTGTTGAGGCAGAGCAAG 58.398 50.000 0.00 0.00 0.00 4.01
130 131 0.761187 AGTGTTGAGGCAGAGCAAGA 59.239 50.000 0.00 0.00 0.00 3.02
131 132 1.141657 AGTGTTGAGGCAGAGCAAGAA 59.858 47.619 0.00 0.00 0.00 2.52
132 133 1.534595 GTGTTGAGGCAGAGCAAGAAG 59.465 52.381 0.00 0.00 0.00 2.85
133 134 1.141657 TGTTGAGGCAGAGCAAGAAGT 59.858 47.619 0.00 0.00 0.00 3.01
134 135 2.368548 TGTTGAGGCAGAGCAAGAAGTA 59.631 45.455 0.00 0.00 0.00 2.24
135 136 3.181455 TGTTGAGGCAGAGCAAGAAGTAA 60.181 43.478 0.00 0.00 0.00 2.24
136 137 3.325293 TGAGGCAGAGCAAGAAGTAAG 57.675 47.619 0.00 0.00 0.00 2.34
137 138 2.634940 TGAGGCAGAGCAAGAAGTAAGT 59.365 45.455 0.00 0.00 0.00 2.24
138 139 3.071602 TGAGGCAGAGCAAGAAGTAAGTT 59.928 43.478 0.00 0.00 0.00 2.66
140 141 3.817647 AGGCAGAGCAAGAAGTAAGTTTG 59.182 43.478 0.00 0.00 0.00 2.93
141 142 3.565902 GGCAGAGCAAGAAGTAAGTTTGT 59.434 43.478 0.00 0.00 0.00 2.83
142 143 4.531332 GCAGAGCAAGAAGTAAGTTTGTG 58.469 43.478 0.00 0.00 0.00 3.33
144 145 5.742446 CAGAGCAAGAAGTAAGTTTGTGAC 58.258 41.667 0.00 0.00 0.00 3.67
145 146 5.294306 CAGAGCAAGAAGTAAGTTTGTGACA 59.706 40.000 0.00 0.00 0.00 3.58
146 147 6.017605 CAGAGCAAGAAGTAAGTTTGTGACAT 60.018 38.462 0.00 0.00 0.00 3.06
147 148 6.017605 AGAGCAAGAAGTAAGTTTGTGACATG 60.018 38.462 0.00 0.00 0.00 3.21
149 150 5.682862 GCAAGAAGTAAGTTTGTGACATGTG 59.317 40.000 1.15 0.00 0.00 3.21
150 151 5.424121 AGAAGTAAGTTTGTGACATGTGC 57.576 39.130 1.15 0.00 0.00 4.57
152 153 3.462982 AGTAAGTTTGTGACATGTGCGA 58.537 40.909 1.15 0.00 0.00 5.10
154 155 5.234752 AGTAAGTTTGTGACATGTGCGATA 58.765 37.500 1.15 0.00 0.00 2.92
155 156 5.874810 AGTAAGTTTGTGACATGTGCGATAT 59.125 36.000 1.15 0.00 0.00 1.63
157 158 5.973651 AGTTTGTGACATGTGCGATATAG 57.026 39.130 1.15 0.00 0.00 1.31
160 161 3.642705 TGTGACATGTGCGATATAGCTC 58.357 45.455 1.15 6.18 38.13 4.09
161 162 3.319122 TGTGACATGTGCGATATAGCTCT 59.681 43.478 1.15 0.00 38.13 4.09
165 166 2.688364 TGTGCGATATAGCTCTCGTG 57.312 50.000 9.32 0.00 37.23 4.35
166 167 1.947456 TGTGCGATATAGCTCTCGTGT 59.053 47.619 9.32 0.00 37.23 4.49
169 170 4.035909 TGTGCGATATAGCTCTCGTGTAAA 59.964 41.667 9.32 0.00 37.23 2.01
170 171 4.974275 GTGCGATATAGCTCTCGTGTAAAA 59.026 41.667 9.32 0.00 37.23 1.52
171 172 5.629849 GTGCGATATAGCTCTCGTGTAAAAT 59.370 40.000 9.32 0.00 37.23 1.82
172 173 5.856986 TGCGATATAGCTCTCGTGTAAAATC 59.143 40.000 9.32 0.00 37.23 2.17
174 175 6.304882 CGATATAGCTCTCGTGTAAAATCGA 58.695 40.000 0.00 0.00 35.70 3.59
175 176 6.246748 CGATATAGCTCTCGTGTAAAATCGAC 59.753 42.308 0.00 0.00 35.70 4.20
177 178 3.502920 AGCTCTCGTGTAAAATCGACTG 58.497 45.455 0.00 0.00 32.65 3.51
178 179 3.190744 AGCTCTCGTGTAAAATCGACTGA 59.809 43.478 0.00 0.00 32.65 3.41
179 180 3.301116 GCTCTCGTGTAAAATCGACTGAC 59.699 47.826 0.00 0.00 32.65 3.51
180 181 4.473199 CTCTCGTGTAAAATCGACTGACA 58.527 43.478 0.00 0.00 32.65 3.58
181 182 4.224433 TCTCGTGTAAAATCGACTGACAC 58.776 43.478 6.84 6.84 37.61 3.67
182 183 3.311106 TCGTGTAAAATCGACTGACACC 58.689 45.455 10.16 0.00 37.68 4.16
183 184 3.054166 CGTGTAAAATCGACTGACACCA 58.946 45.455 10.16 0.00 37.68 4.17
184 185 3.491639 CGTGTAAAATCGACTGACACCAA 59.508 43.478 10.16 0.00 37.68 3.67
185 186 4.607557 CGTGTAAAATCGACTGACACCAAC 60.608 45.833 10.16 0.00 37.68 3.77
187 188 2.631160 AAATCGACTGACACCAACCA 57.369 45.000 0.00 0.00 0.00 3.67
188 189 2.169832 AATCGACTGACACCAACCAG 57.830 50.000 0.00 0.00 36.53 4.00
189 190 1.338107 ATCGACTGACACCAACCAGA 58.662 50.000 0.00 0.00 34.65 3.86
190 191 1.338107 TCGACTGACACCAACCAGAT 58.662 50.000 0.00 0.00 34.65 2.90
191 192 1.000843 TCGACTGACACCAACCAGATG 59.999 52.381 0.00 0.00 34.65 2.90
192 193 1.160137 GACTGACACCAACCAGATGC 58.840 55.000 0.00 0.00 34.65 3.91
193 194 0.603707 ACTGACACCAACCAGATGCG 60.604 55.000 0.00 0.00 34.65 4.73
194 195 0.320683 CTGACACCAACCAGATGCGA 60.321 55.000 0.00 0.00 32.37 5.10
195 196 0.107643 TGACACCAACCAGATGCGAA 59.892 50.000 0.00 0.00 0.00 4.70
197 198 1.812571 GACACCAACCAGATGCGAATT 59.187 47.619 0.00 0.00 0.00 2.17
198 199 2.228822 GACACCAACCAGATGCGAATTT 59.771 45.455 0.00 0.00 0.00 1.82
200 201 3.069443 ACACCAACCAGATGCGAATTTTT 59.931 39.130 0.00 0.00 0.00 1.94
330 336 0.391597 CGCGGTATATGGAGTTGGGT 59.608 55.000 0.00 0.00 0.00 4.51
333 339 1.140052 CGGTATATGGAGTTGGGTGCA 59.860 52.381 0.00 0.00 0.00 4.57
353 359 1.079405 GGTCCGAATCGCCAACTCA 60.079 57.895 0.00 0.00 0.00 3.41
424 432 4.150454 CCGCCCTCTCTCCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
432 440 1.221909 TCTCTCCTCCCTGCCACCTA 61.222 60.000 0.00 0.00 0.00 3.08
618 2912 6.171213 TGCCATGTTCATTGCATTTTGAATA 58.829 32.000 7.33 8.00 34.60 1.75
717 3016 2.951227 GCATTTTAGCGCGGCTGC 60.951 61.111 8.83 7.70 40.10 5.25
799 3098 3.118454 ACGCGGCGGTTGAAGATG 61.118 61.111 27.37 0.00 0.00 2.90
800 3099 4.520846 CGCGGCGGTTGAAGATGC 62.521 66.667 15.84 0.00 0.00 3.91
801 3100 3.127533 GCGGCGGTTGAAGATGCT 61.128 61.111 9.78 0.00 0.00 3.79
802 3101 3.093278 CGGCGGTTGAAGATGCTC 58.907 61.111 0.00 0.00 0.00 4.26
804 3103 0.179111 CGGCGGTTGAAGATGCTCTA 60.179 55.000 0.00 0.00 0.00 2.43
805 3104 1.739035 CGGCGGTTGAAGATGCTCTAA 60.739 52.381 0.00 0.00 0.00 2.10
806 3105 1.936547 GGCGGTTGAAGATGCTCTAAG 59.063 52.381 0.00 0.00 0.00 2.18
807 3106 2.418746 GGCGGTTGAAGATGCTCTAAGA 60.419 50.000 0.00 0.00 0.00 2.10
808 3107 3.262420 GCGGTTGAAGATGCTCTAAGAA 58.738 45.455 0.00 0.00 0.00 2.52
809 3108 3.684788 GCGGTTGAAGATGCTCTAAGAAA 59.315 43.478 0.00 0.00 0.00 2.52
810 3109 4.436183 GCGGTTGAAGATGCTCTAAGAAAC 60.436 45.833 0.00 0.00 0.00 2.78
811 3110 4.093556 CGGTTGAAGATGCTCTAAGAAACC 59.906 45.833 0.00 0.00 0.00 3.27
812 3111 4.093556 GGTTGAAGATGCTCTAAGAAACCG 59.906 45.833 0.00 0.00 0.00 4.44
814 3113 3.513912 TGAAGATGCTCTAAGAAACCGGA 59.486 43.478 9.46 0.00 0.00 5.14
815 3114 4.020573 TGAAGATGCTCTAAGAAACCGGAA 60.021 41.667 9.46 0.00 0.00 4.30
816 3115 4.762289 AGATGCTCTAAGAAACCGGAAT 57.238 40.909 9.46 0.00 0.00 3.01
817 3116 4.446371 AGATGCTCTAAGAAACCGGAATG 58.554 43.478 9.46 0.00 0.00 2.67
818 3117 3.695830 TGCTCTAAGAAACCGGAATGT 57.304 42.857 9.46 0.00 0.00 2.71
819 3118 3.596214 TGCTCTAAGAAACCGGAATGTC 58.404 45.455 9.46 0.00 0.00 3.06
821 3120 3.371285 GCTCTAAGAAACCGGAATGTCAC 59.629 47.826 9.46 0.00 0.00 3.67
822 3121 4.566004 CTCTAAGAAACCGGAATGTCACA 58.434 43.478 9.46 0.00 0.00 3.58
823 3122 4.963373 TCTAAGAAACCGGAATGTCACAA 58.037 39.130 9.46 0.00 0.00 3.33
824 3123 3.982576 AAGAAACCGGAATGTCACAAC 57.017 42.857 9.46 0.00 0.00 3.32
826 3125 3.551846 AGAAACCGGAATGTCACAACTT 58.448 40.909 9.46 0.00 0.00 2.66
827 3126 3.951680 AGAAACCGGAATGTCACAACTTT 59.048 39.130 9.46 0.00 0.00 2.66
828 3127 4.401202 AGAAACCGGAATGTCACAACTTTT 59.599 37.500 9.46 0.00 0.00 2.27
829 3128 3.708563 ACCGGAATGTCACAACTTTTG 57.291 42.857 9.46 0.00 0.00 2.44
830 3129 3.020984 ACCGGAATGTCACAACTTTTGT 58.979 40.909 9.46 0.00 46.75 2.83
831 3130 4.200874 ACCGGAATGTCACAACTTTTGTA 58.799 39.130 9.46 0.00 43.23 2.41
833 3132 5.125739 ACCGGAATGTCACAACTTTTGTAAA 59.874 36.000 9.46 0.00 43.23 2.01
834 3133 5.685511 CCGGAATGTCACAACTTTTGTAAAG 59.314 40.000 0.00 0.00 43.23 1.85
835 3134 6.459024 CCGGAATGTCACAACTTTTGTAAAGA 60.459 38.462 0.00 0.00 43.23 2.52
837 3136 7.165812 CGGAATGTCACAACTTTTGTAAAGAAG 59.834 37.037 6.20 1.38 43.23 2.85
838 3137 7.973944 GGAATGTCACAACTTTTGTAAAGAAGT 59.026 33.333 6.20 1.91 43.23 3.01
839 3138 9.997482 GAATGTCACAACTTTTGTAAAGAAGTA 57.003 29.630 6.20 0.00 43.23 2.24
841 3140 7.457868 TGTCACAACTTTTGTAAAGAAGTACG 58.542 34.615 6.20 0.00 43.23 3.67
842 3141 6.903479 GTCACAACTTTTGTAAAGAAGTACGG 59.097 38.462 6.20 0.00 43.23 4.02
843 3142 6.817641 TCACAACTTTTGTAAAGAAGTACGGA 59.182 34.615 6.20 0.00 43.23 4.69
844 3143 7.010738 TCACAACTTTTGTAAAGAAGTACGGAG 59.989 37.037 6.20 0.00 43.23 4.63
846 3145 7.981225 ACAACTTTTGTAAAGAAGTACGGAGTA 59.019 33.333 6.20 0.00 43.27 2.59
858 3157 2.693797 ACGGAGTATACAATACGGCG 57.306 50.000 4.80 4.80 41.94 6.46
859 3158 1.334054 CGGAGTATACAATACGGCGC 58.666 55.000 6.90 0.00 0.00 6.53
860 3159 1.706443 GGAGTATACAATACGGCGCC 58.294 55.000 19.07 19.07 0.00 6.53
861 3160 1.670967 GGAGTATACAATACGGCGCCC 60.671 57.143 23.46 2.84 0.00 6.13
862 3161 0.319405 AGTATACAATACGGCGCCCC 59.681 55.000 23.46 0.00 0.00 5.80
874 3173 3.603671 CGCCCCCGCTACCTACTC 61.604 72.222 0.00 0.00 0.00 2.59
875 3174 2.123382 GCCCCCGCTACCTACTCT 60.123 66.667 0.00 0.00 0.00 3.24
878 3177 2.499827 CCCCGCTACCTACTCTGCC 61.500 68.421 0.00 0.00 0.00 4.85
879 3178 2.499827 CCCGCTACCTACTCTGCCC 61.500 68.421 0.00 0.00 0.00 5.36
880 3179 2.499827 CCGCTACCTACTCTGCCCC 61.500 68.421 0.00 0.00 0.00 5.80
881 3180 1.756950 CGCTACCTACTCTGCCCCA 60.757 63.158 0.00 0.00 0.00 4.96
884 3183 2.034799 GCTACCTACTCTGCCCCATCA 61.035 57.143 0.00 0.00 0.00 3.07
885 3184 1.689273 CTACCTACTCTGCCCCATCAC 59.311 57.143 0.00 0.00 0.00 3.06
890 3189 2.204136 TCTGCCCCATCACCACCT 60.204 61.111 0.00 0.00 0.00 4.00
891 3190 2.262774 CTCTGCCCCATCACCACCTC 62.263 65.000 0.00 0.00 0.00 3.85
893 3192 1.929860 CTGCCCCATCACCACCTCAT 61.930 60.000 0.00 0.00 0.00 2.90
894 3193 1.307647 GCCCCATCACCACCTCATT 59.692 57.895 0.00 0.00 0.00 2.57
895 3194 0.753111 GCCCCATCACCACCTCATTC 60.753 60.000 0.00 0.00 0.00 2.67
896 3195 0.106519 CCCCATCACCACCTCATTCC 60.107 60.000 0.00 0.00 0.00 3.01
898 3197 0.106519 CCATCACCACCTCATTCCCC 60.107 60.000 0.00 0.00 0.00 4.81
899 3198 0.106519 CATCACCACCTCATTCCCCC 60.107 60.000 0.00 0.00 0.00 5.40
977 3278 1.376812 CACCCAAGAACCGTAGCCC 60.377 63.158 0.00 0.00 0.00 5.19
1028 4025 2.592308 GATGTCCAGGCTCACCCC 59.408 66.667 0.00 0.00 36.11 4.95
1152 4153 0.868406 GGAAGAAGGTTGTGCAGTCG 59.132 55.000 0.00 0.00 0.00 4.18
1175 4176 1.019805 GCCGGCTTCTTCTACCACAC 61.020 60.000 22.15 0.00 0.00 3.82
1184 4185 1.808531 TTCTACCACACCACCGACGG 61.809 60.000 13.61 13.61 0.00 4.79
1261 4274 2.531685 CCTCCCCTTGGTCCCACA 60.532 66.667 0.00 0.00 0.00 4.17
1267 4280 2.683475 CTTGGTCCCACATCCCCC 59.317 66.667 0.00 0.00 0.00 5.40
1329 4342 0.179158 GCTTCTTCTCCGTCGAGGAC 60.179 60.000 6.70 0.00 45.98 3.85
1333 4346 1.378124 CTTCTCCGTCGAGGACTCCC 61.378 65.000 6.70 0.00 45.98 4.30
1352 4365 2.287915 CCCGCGATGGATTGTTTCTTAG 59.712 50.000 8.23 0.00 42.00 2.18
1404 4423 2.754946 TTCGGTACATGGTCTCCAAC 57.245 50.000 0.00 0.00 36.95 3.77
1448 4470 3.604629 GCCTCACTCTGGCTACGA 58.395 61.111 0.00 0.00 46.38 3.43
1452 4474 1.107114 CTCACTCTGGCTACGATGGT 58.893 55.000 0.00 0.00 0.00 3.55
1453 4475 1.066303 CTCACTCTGGCTACGATGGTC 59.934 57.143 0.00 0.00 0.00 4.02
1454 4476 0.248661 CACTCTGGCTACGATGGTCG 60.249 60.000 0.00 0.00 46.93 4.79
1485 4507 2.737252 CTCTTACTTGGGTTTCGACAGC 59.263 50.000 0.00 0.00 0.00 4.40
1487 4509 2.851263 TACTTGGGTTTCGACAGCAT 57.149 45.000 2.87 0.00 0.00 3.79
1537 4559 0.874390 GTTTGTGCTGGAATCGCTGA 59.126 50.000 0.00 0.00 0.00 4.26
1622 5097 0.392863 GGCAATGAAACCCCAATGGC 60.393 55.000 0.00 0.00 37.83 4.40
1644 5119 2.245096 CATCAAAGTTAGCTTGTGCGC 58.755 47.619 0.00 0.00 45.42 6.09
1646 5121 0.593128 CAAAGTTAGCTTGTGCGCCT 59.407 50.000 4.18 0.00 45.42 5.52
1647 5122 1.001378 CAAAGTTAGCTTGTGCGCCTT 60.001 47.619 4.18 0.00 45.42 4.35
1663 5138 1.411246 GCCTTTCAACCCGGAGTTTTT 59.589 47.619 0.73 0.00 36.18 1.94
1693 5168 1.676635 TCTGCACTTGCTCATGGGC 60.677 57.895 11.75 11.75 42.66 5.36
1694 5169 1.974875 CTGCACTTGCTCATGGGCA 60.975 57.895 18.52 18.52 41.72 5.36
1703 5207 1.917495 CTCATGGGCATGTCTGGGA 59.083 57.895 0.00 0.00 39.72 4.37
1705 5209 0.475475 TCATGGGCATGTCTGGGATC 59.525 55.000 0.00 0.00 39.72 3.36
1746 5257 2.033801 GGCTGAAATGGACAATCATCCG 59.966 50.000 0.00 0.00 42.24 4.18
1749 5260 1.338020 GAAATGGACAATCATCCGGCC 59.662 52.381 0.00 0.00 42.24 6.13
1755 5266 2.828549 AATCATCCGGCCGCCAAC 60.829 61.111 22.85 0.00 0.00 3.77
1766 5277 1.663173 CCGCCAACACCCGAAAATT 59.337 52.632 0.00 0.00 0.00 1.82
1820 5331 6.618770 CTGGACAGCTATTTTATATCGACG 57.381 41.667 0.00 0.00 0.00 5.12
1839 5353 1.660917 CCGGCGGTCTAGAAGGATC 59.339 63.158 19.97 0.00 0.00 3.36
1844 5358 2.032620 GCGGTCTAGAAGGATCTGGAA 58.967 52.381 0.00 0.00 43.78 3.53
1862 5376 4.297510 TGGAACAAATGCATTTTCGACTG 58.702 39.130 21.95 12.90 31.92 3.51
1878 5392 7.591006 TTTCGACTGTATCAGTTTATGTTCC 57.409 36.000 3.91 0.00 45.44 3.62
1888 5402 5.630121 TCAGTTTATGTTCCTGGTGTTGAT 58.370 37.500 0.00 0.00 0.00 2.57
1896 5410 7.823745 ATGTTCCTGGTGTTGATATTTATCC 57.176 36.000 0.00 0.00 31.71 2.59
1897 5411 6.726379 TGTTCCTGGTGTTGATATTTATCCA 58.274 36.000 0.00 0.00 31.71 3.41
1926 5449 2.945008 TGATTCACCTCGATGGCAAATC 59.055 45.455 14.82 14.82 39.02 2.17
1966 5489 6.183360 TGTTGCACAAGCTTTCAAATGTAGTA 60.183 34.615 0.00 0.00 42.74 1.82
2023 5546 2.028476 TGAAGTCATTGGAGTACACCCG 60.028 50.000 6.89 0.00 0.00 5.28
2026 5549 0.036765 TCATTGGAGTACACCCGCAC 60.037 55.000 6.89 0.00 0.00 5.34
2027 5550 0.321210 CATTGGAGTACACCCGCACA 60.321 55.000 6.89 0.00 0.00 4.57
2028 5551 0.036388 ATTGGAGTACACCCGCACAG 60.036 55.000 6.89 0.00 0.00 3.66
2129 5659 6.071051 TGTGTATCACATTGAGCCTAACTACA 60.071 38.462 0.00 0.00 39.62 2.74
2169 5699 1.543802 CCCATATGTGCCGTTGTTGTT 59.456 47.619 1.24 0.00 0.00 2.83
2179 5727 0.601841 CGTTGTTGTTCCGCCTACCT 60.602 55.000 0.00 0.00 0.00 3.08
2221 5790 5.394443 GCTGGCAACTCCAAATTGATGAATA 60.394 40.000 0.00 0.00 46.01 1.75
2272 5849 2.954753 GAGGTGCTCCGTTGCGTTG 61.955 63.158 0.00 0.00 39.05 4.10
2274 5851 2.052237 GTGCTCCGTTGCGTTGTG 60.052 61.111 0.00 0.00 35.36 3.33
2283 5870 1.526887 CGTTGCGTTGTGAAGAGTCAT 59.473 47.619 0.00 0.00 35.80 3.06
2287 5874 5.614668 CGTTGCGTTGTGAAGAGTCATAAAT 60.615 40.000 0.00 0.00 36.72 1.40
2294 5883 9.694520 CGTTGTGAAGAGTCATAAATATTCAAG 57.305 33.333 0.00 0.00 36.72 3.02
2336 5931 6.644347 TGGAAAAATGCCAACTTCAGTTTTA 58.356 32.000 1.95 0.00 40.38 1.52
2340 5935 7.770801 AAAATGCCAACTTCAGTTTTAAGTC 57.229 32.000 0.00 0.00 36.17 3.01
2353 6299 7.306213 TCAGTTTTAAGTCTGATCTGTACTCG 58.694 38.462 7.33 0.00 36.04 4.18
2374 6320 5.034797 TCGTTTTCATATCTAGCACTGTCG 58.965 41.667 0.00 0.00 0.00 4.35
2500 6940 7.807433 TGTGTTCTATTTTTGACATGTACATGC 59.193 33.333 31.19 23.82 42.39 4.06
2543 7009 5.255687 TGTTCTGATACAATCTGCATTGGT 58.744 37.500 5.11 0.00 43.47 3.67
2544 7010 5.711506 TGTTCTGATACAATCTGCATTGGTT 59.288 36.000 5.11 0.00 43.47 3.67
2545 7011 5.823209 TCTGATACAATCTGCATTGGTTG 57.177 39.130 5.11 1.49 43.47 3.77
2546 7012 4.641541 TCTGATACAATCTGCATTGGTTGG 59.358 41.667 5.11 0.00 43.47 3.77
2547 7013 4.343231 TGATACAATCTGCATTGGTTGGT 58.657 39.130 5.11 0.00 43.47 3.67
2548 7014 4.771577 TGATACAATCTGCATTGGTTGGTT 59.228 37.500 5.11 0.00 43.47 3.67
2549 7015 3.665745 ACAATCTGCATTGGTTGGTTC 57.334 42.857 5.11 0.00 43.47 3.62
2550 7016 3.233507 ACAATCTGCATTGGTTGGTTCT 58.766 40.909 5.11 0.00 43.47 3.01
2551 7017 3.642848 ACAATCTGCATTGGTTGGTTCTT 59.357 39.130 5.11 0.00 43.47 2.52
2552 7018 4.101430 ACAATCTGCATTGGTTGGTTCTTT 59.899 37.500 5.11 0.00 43.47 2.52
2553 7019 3.731652 TCTGCATTGGTTGGTTCTTTG 57.268 42.857 0.00 0.00 0.00 2.77
2554 7020 3.295093 TCTGCATTGGTTGGTTCTTTGA 58.705 40.909 0.00 0.00 0.00 2.69
2555 7021 3.896888 TCTGCATTGGTTGGTTCTTTGAT 59.103 39.130 0.00 0.00 0.00 2.57
2556 7022 4.344679 TCTGCATTGGTTGGTTCTTTGATT 59.655 37.500 0.00 0.00 0.00 2.57
2557 7023 4.630111 TGCATTGGTTGGTTCTTTGATTC 58.370 39.130 0.00 0.00 0.00 2.52
2558 7024 4.344679 TGCATTGGTTGGTTCTTTGATTCT 59.655 37.500 0.00 0.00 0.00 2.40
2559 7025 5.538053 TGCATTGGTTGGTTCTTTGATTCTA 59.462 36.000 0.00 0.00 0.00 2.10
2560 7026 5.863935 GCATTGGTTGGTTCTTTGATTCTAC 59.136 40.000 0.00 0.00 0.00 2.59
2561 7027 5.682943 TTGGTTGGTTCTTTGATTCTACG 57.317 39.130 0.00 0.00 0.00 3.51
2562 7028 4.710324 TGGTTGGTTCTTTGATTCTACGT 58.290 39.130 0.00 0.00 0.00 3.57
2563 7029 5.856156 TGGTTGGTTCTTTGATTCTACGTA 58.144 37.500 0.00 0.00 0.00 3.57
2564 7030 5.929992 TGGTTGGTTCTTTGATTCTACGTAG 59.070 40.000 16.73 16.73 0.00 3.51
2565 7031 5.350640 GGTTGGTTCTTTGATTCTACGTAGG 59.649 44.000 22.01 4.69 0.00 3.18
2566 7032 5.733620 TGGTTCTTTGATTCTACGTAGGT 57.266 39.130 22.01 11.49 0.00 3.08
2567 7033 5.475719 TGGTTCTTTGATTCTACGTAGGTG 58.524 41.667 22.01 0.00 0.00 4.00
2568 7034 5.011329 TGGTTCTTTGATTCTACGTAGGTGT 59.989 40.000 22.01 8.67 0.00 4.16
2576 7042 5.703592 TGATTCTACGTAGGTGTTTGCATTT 59.296 36.000 22.01 0.00 0.00 2.32
2582 7048 4.454504 ACGTAGGTGTTTGCATTTCTAAGG 59.545 41.667 0.00 0.00 0.00 2.69
2586 7052 6.969993 AGGTGTTTGCATTTCTAAGGTTTA 57.030 33.333 0.00 0.00 0.00 2.01
2588 7054 5.924254 GGTGTTTGCATTTCTAAGGTTTACC 59.076 40.000 0.00 0.00 0.00 2.85
2607 8218 7.837187 GGTTTACCTGATATCTCTAGCTAGGAT 59.163 40.741 20.58 20.94 0.00 3.24
2608 8219 9.250246 GTTTACCTGATATCTCTAGCTAGGATT 57.750 37.037 20.58 11.77 0.00 3.01
2610 8221 7.038531 ACCTGATATCTCTAGCTAGGATTCA 57.961 40.000 20.58 20.28 0.00 2.57
2611 8222 7.651607 ACCTGATATCTCTAGCTAGGATTCAT 58.348 38.462 20.58 12.30 0.00 2.57
2613 8224 9.066892 CCTGATATCTCTAGCTAGGATTCATAC 57.933 40.741 20.58 11.37 0.00 2.39
2614 8225 9.851686 CTGATATCTCTAGCTAGGATTCATACT 57.148 37.037 20.58 3.40 0.00 2.12
2616 8227 8.902540 ATATCTCTAGCTAGGATTCATACTCG 57.097 38.462 20.58 0.00 0.00 4.18
2617 8228 6.116711 TCTCTAGCTAGGATTCATACTCGT 57.883 41.667 20.58 0.00 0.00 4.18
2619 8230 7.098477 TCTCTAGCTAGGATTCATACTCGTAC 58.902 42.308 20.58 0.00 0.00 3.67
2621 8232 5.950758 AGCTAGGATTCATACTCGTACTG 57.049 43.478 0.00 0.00 0.00 2.74
2623 8234 6.242396 AGCTAGGATTCATACTCGTACTGAT 58.758 40.000 0.00 0.00 0.00 2.90
2624 8235 6.150307 AGCTAGGATTCATACTCGTACTGATG 59.850 42.308 0.00 0.00 0.00 3.07
2626 8237 7.119407 GCTAGGATTCATACTCGTACTGATGTA 59.881 40.741 0.00 0.00 0.00 2.29
2627 8238 7.204496 AGGATTCATACTCGTACTGATGTAC 57.796 40.000 0.00 0.00 44.03 2.90
2628 8239 6.771267 AGGATTCATACTCGTACTGATGTACA 59.229 38.462 0.00 0.00 46.88 2.90
2629 8240 7.448777 AGGATTCATACTCGTACTGATGTACAT 59.551 37.037 8.43 8.43 46.88 2.29
2631 8242 8.803201 ATTCATACTCGTACTGATGTACATTG 57.197 34.615 10.30 8.83 46.88 2.82
2634 8245 5.899120 ACTCGTACTGATGTACATTGACT 57.101 39.130 10.30 0.00 46.88 3.41
2635 8246 5.641709 ACTCGTACTGATGTACATTGACTG 58.358 41.667 10.30 4.28 46.88 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.883142 TGTTTTCATGTTTTTCTGTTTAATCCT 57.117 25.926 0.00 0.00 0.00 3.24
5 6 9.636965 GCTGTTTTCATGTTTTTCTGTTTAATC 57.363 29.630 0.00 0.00 0.00 1.75
6 7 9.160496 TGCTGTTTTCATGTTTTTCTGTTTAAT 57.840 25.926 0.00 0.00 0.00 1.40
9 10 6.426328 TGTGCTGTTTTCATGTTTTTCTGTTT 59.574 30.769 0.00 0.00 0.00 2.83
11 12 5.477510 TGTGCTGTTTTCATGTTTTTCTGT 58.522 33.333 0.00 0.00 0.00 3.41
12 13 5.806502 TCTGTGCTGTTTTCATGTTTTTCTG 59.193 36.000 0.00 0.00 0.00 3.02
13 14 5.964758 TCTGTGCTGTTTTCATGTTTTTCT 58.035 33.333 0.00 0.00 0.00 2.52
15 16 6.576185 AGATCTGTGCTGTTTTCATGTTTTT 58.424 32.000 0.00 0.00 0.00 1.94
18 19 4.823442 TGAGATCTGTGCTGTTTTCATGTT 59.177 37.500 0.00 0.00 0.00 2.71
20 21 5.366829 TTGAGATCTGTGCTGTTTTCATG 57.633 39.130 0.00 0.00 0.00 3.07
21 22 4.458295 CCTTGAGATCTGTGCTGTTTTCAT 59.542 41.667 0.00 0.00 0.00 2.57
23 24 3.365767 GCCTTGAGATCTGTGCTGTTTTC 60.366 47.826 0.00 0.00 0.00 2.29
24 25 2.555757 GCCTTGAGATCTGTGCTGTTTT 59.444 45.455 0.00 0.00 0.00 2.43
26 27 1.072806 TGCCTTGAGATCTGTGCTGTT 59.927 47.619 0.00 0.00 0.00 3.16
27 28 0.689055 TGCCTTGAGATCTGTGCTGT 59.311 50.000 0.00 0.00 0.00 4.40
28 29 1.085091 GTGCCTTGAGATCTGTGCTG 58.915 55.000 0.00 0.00 0.00 4.41
29 30 0.689055 TGTGCCTTGAGATCTGTGCT 59.311 50.000 0.00 0.00 0.00 4.40
30 31 1.669779 GATGTGCCTTGAGATCTGTGC 59.330 52.381 0.00 0.00 0.00 4.57
31 32 2.286872 GGATGTGCCTTGAGATCTGTG 58.713 52.381 0.00 0.00 0.00 3.66
32 33 1.911357 TGGATGTGCCTTGAGATCTGT 59.089 47.619 0.00 0.00 37.63 3.41
33 34 2.681848 GTTGGATGTGCCTTGAGATCTG 59.318 50.000 0.00 0.00 37.63 2.90
37 38 0.684535 TCGTTGGATGTGCCTTGAGA 59.315 50.000 0.00 0.00 37.63 3.27
38 39 1.197721 GTTCGTTGGATGTGCCTTGAG 59.802 52.381 0.00 0.00 37.63 3.02
39 40 1.234821 GTTCGTTGGATGTGCCTTGA 58.765 50.000 0.00 0.00 37.63 3.02
40 41 0.950836 TGTTCGTTGGATGTGCCTTG 59.049 50.000 0.00 0.00 37.63 3.61
41 42 1.202758 TCTGTTCGTTGGATGTGCCTT 60.203 47.619 0.00 0.00 37.63 4.35
42 43 0.396435 TCTGTTCGTTGGATGTGCCT 59.604 50.000 0.00 0.00 37.63 4.75
43 44 1.234821 TTCTGTTCGTTGGATGTGCC 58.765 50.000 0.00 0.00 37.10 5.01
45 46 5.399301 GTCAATTTTCTGTTCGTTGGATGTG 59.601 40.000 0.00 0.00 0.00 3.21
46 47 5.299279 AGTCAATTTTCTGTTCGTTGGATGT 59.701 36.000 0.00 0.00 0.00 3.06
47 48 5.626543 CAGTCAATTTTCTGTTCGTTGGATG 59.373 40.000 0.08 0.00 0.00 3.51
48 49 5.530915 TCAGTCAATTTTCTGTTCGTTGGAT 59.469 36.000 6.55 0.00 33.89 3.41
50 51 4.970003 GTCAGTCAATTTTCTGTTCGTTGG 59.030 41.667 6.55 0.00 33.89 3.77
52 53 4.638421 TGGTCAGTCAATTTTCTGTTCGTT 59.362 37.500 6.55 0.00 33.89 3.85
54 55 4.035091 TGTGGTCAGTCAATTTTCTGTTCG 59.965 41.667 6.55 0.00 33.89 3.95
55 56 5.499139 TGTGGTCAGTCAATTTTCTGTTC 57.501 39.130 6.55 3.09 33.89 3.18
56 57 5.913137 TTGTGGTCAGTCAATTTTCTGTT 57.087 34.783 6.55 0.00 33.89 3.16
57 58 5.913137 TTTGTGGTCAGTCAATTTTCTGT 57.087 34.783 6.55 0.00 33.89 3.41
58 59 8.870160 TTATTTTGTGGTCAGTCAATTTTCTG 57.130 30.769 1.47 1.47 0.00 3.02
62 63 9.665719 ACTTTTTATTTTGTGGTCAGTCAATTT 57.334 25.926 0.00 0.00 0.00 1.82
63 64 9.313118 GACTTTTTATTTTGTGGTCAGTCAATT 57.687 29.630 0.00 0.00 0.00 2.32
64 65 8.474025 TGACTTTTTATTTTGTGGTCAGTCAAT 58.526 29.630 0.00 0.00 0.00 2.57
65 66 7.831753 TGACTTTTTATTTTGTGGTCAGTCAA 58.168 30.769 0.00 0.00 0.00 3.18
66 67 7.397892 TGACTTTTTATTTTGTGGTCAGTCA 57.602 32.000 0.00 0.00 0.00 3.41
67 68 7.973944 AGTTGACTTTTTATTTTGTGGTCAGTC 59.026 33.333 0.00 0.00 34.48 3.51
68 69 7.759433 CAGTTGACTTTTTATTTTGTGGTCAGT 59.241 33.333 0.00 0.00 34.48 3.41
69 70 7.973388 TCAGTTGACTTTTTATTTTGTGGTCAG 59.027 33.333 0.00 0.00 34.48 3.51
70 71 7.757624 GTCAGTTGACTTTTTATTTTGTGGTCA 59.242 33.333 5.04 0.00 41.65 4.02
71 72 8.115491 GTCAGTTGACTTTTTATTTTGTGGTC 57.885 34.615 5.04 0.00 41.65 4.02
87 88 7.171678 ACTTTAGCTACATTTCAGTCAGTTGAC 59.828 37.037 4.09 4.09 45.08 3.18
89 90 7.041780 ACACTTTAGCTACATTTCAGTCAGTTG 60.042 37.037 0.00 0.00 0.00 3.16
90 91 6.992715 ACACTTTAGCTACATTTCAGTCAGTT 59.007 34.615 0.00 0.00 0.00 3.16
91 92 6.525629 ACACTTTAGCTACATTTCAGTCAGT 58.474 36.000 0.00 0.00 0.00 3.41
92 93 7.171508 TCAACACTTTAGCTACATTTCAGTCAG 59.828 37.037 0.00 0.00 0.00 3.51
94 95 7.360438 CCTCAACACTTTAGCTACATTTCAGTC 60.360 40.741 0.00 0.00 0.00 3.51
95 96 6.428159 CCTCAACACTTTAGCTACATTTCAGT 59.572 38.462 0.00 0.00 0.00 3.41
96 97 6.621596 GCCTCAACACTTTAGCTACATTTCAG 60.622 42.308 0.00 0.00 0.00 3.02
97 98 5.181245 GCCTCAACACTTTAGCTACATTTCA 59.819 40.000 0.00 0.00 0.00 2.69
98 99 5.181245 TGCCTCAACACTTTAGCTACATTTC 59.819 40.000 0.00 0.00 0.00 2.17
100 101 4.651778 TGCCTCAACACTTTAGCTACATT 58.348 39.130 0.00 0.00 0.00 2.71
102 103 3.323691 TCTGCCTCAACACTTTAGCTACA 59.676 43.478 0.00 0.00 0.00 2.74
103 104 3.926616 TCTGCCTCAACACTTTAGCTAC 58.073 45.455 0.00 0.00 0.00 3.58
105 106 2.873649 GCTCTGCCTCAACACTTTAGCT 60.874 50.000 0.00 0.00 0.00 3.32
108 109 2.928801 TGCTCTGCCTCAACACTTTA 57.071 45.000 0.00 0.00 0.00 1.85
109 110 1.952296 CTTGCTCTGCCTCAACACTTT 59.048 47.619 0.00 0.00 0.00 2.66
110 111 1.141657 TCTTGCTCTGCCTCAACACTT 59.858 47.619 0.00 0.00 0.00 3.16
111 112 0.761187 TCTTGCTCTGCCTCAACACT 59.239 50.000 0.00 0.00 0.00 3.55
112 113 1.534595 CTTCTTGCTCTGCCTCAACAC 59.465 52.381 0.00 0.00 0.00 3.32
114 115 1.889545 ACTTCTTGCTCTGCCTCAAC 58.110 50.000 0.00 0.00 0.00 3.18
115 116 3.071602 ACTTACTTCTTGCTCTGCCTCAA 59.928 43.478 0.00 0.00 0.00 3.02
116 117 2.634940 ACTTACTTCTTGCTCTGCCTCA 59.365 45.455 0.00 0.00 0.00 3.86
117 118 3.326836 ACTTACTTCTTGCTCTGCCTC 57.673 47.619 0.00 0.00 0.00 4.70
118 119 3.778954 AACTTACTTCTTGCTCTGCCT 57.221 42.857 0.00 0.00 0.00 4.75
119 120 3.565902 ACAAACTTACTTCTTGCTCTGCC 59.434 43.478 0.00 0.00 0.00 4.85
120 121 4.273480 TCACAAACTTACTTCTTGCTCTGC 59.727 41.667 0.00 0.00 0.00 4.26
122 123 5.428253 TGTCACAAACTTACTTCTTGCTCT 58.572 37.500 0.00 0.00 0.00 4.09
125 126 5.682862 CACATGTCACAAACTTACTTCTTGC 59.317 40.000 0.00 0.00 0.00 4.01
126 127 5.682862 GCACATGTCACAAACTTACTTCTTG 59.317 40.000 0.00 0.00 0.00 3.02
127 128 5.504010 CGCACATGTCACAAACTTACTTCTT 60.504 40.000 0.00 0.00 0.00 2.52
128 129 4.024893 CGCACATGTCACAAACTTACTTCT 60.025 41.667 0.00 0.00 0.00 2.85
129 130 4.025229 TCGCACATGTCACAAACTTACTTC 60.025 41.667 0.00 0.00 0.00 3.01
130 131 3.874543 TCGCACATGTCACAAACTTACTT 59.125 39.130 0.00 0.00 0.00 2.24
131 132 3.462982 TCGCACATGTCACAAACTTACT 58.537 40.909 0.00 0.00 0.00 2.24
132 133 3.870723 TCGCACATGTCACAAACTTAC 57.129 42.857 0.00 0.00 0.00 2.34
133 134 6.019075 GCTATATCGCACATGTCACAAACTTA 60.019 38.462 0.00 0.00 0.00 2.24
134 135 5.220662 GCTATATCGCACATGTCACAAACTT 60.221 40.000 0.00 0.00 0.00 2.66
135 136 4.271049 GCTATATCGCACATGTCACAAACT 59.729 41.667 0.00 0.00 0.00 2.66
136 137 4.271049 AGCTATATCGCACATGTCACAAAC 59.729 41.667 0.00 0.00 0.00 2.93
137 138 4.441792 AGCTATATCGCACATGTCACAAA 58.558 39.130 0.00 0.00 0.00 2.83
138 139 4.051237 GAGCTATATCGCACATGTCACAA 58.949 43.478 0.00 0.00 0.00 3.33
140 141 3.906998 AGAGCTATATCGCACATGTCAC 58.093 45.455 0.00 0.00 0.00 3.67
141 142 3.365364 CGAGAGCTATATCGCACATGTCA 60.365 47.826 0.00 0.00 32.78 3.58
142 143 3.167425 CGAGAGCTATATCGCACATGTC 58.833 50.000 0.00 0.00 32.78 3.06
144 145 2.913590 CACGAGAGCTATATCGCACATG 59.086 50.000 13.61 0.00 43.89 3.21
145 146 2.554462 ACACGAGAGCTATATCGCACAT 59.446 45.455 13.61 0.00 43.89 3.21
146 147 1.947456 ACACGAGAGCTATATCGCACA 59.053 47.619 13.61 0.00 43.89 4.57
147 148 2.690173 ACACGAGAGCTATATCGCAC 57.310 50.000 13.61 0.00 43.89 5.34
149 150 5.002654 CGATTTTACACGAGAGCTATATCGC 59.997 44.000 13.61 0.00 43.89 4.58
150 151 6.246748 GTCGATTTTACACGAGAGCTATATCG 59.753 42.308 12.45 12.45 45.52 2.92
152 153 7.041303 TCAGTCGATTTTACACGAGAGCTATAT 60.041 37.037 0.00 0.00 39.16 0.86
154 155 5.066117 TCAGTCGATTTTACACGAGAGCTAT 59.934 40.000 0.00 0.00 39.16 2.97
155 156 4.393990 TCAGTCGATTTTACACGAGAGCTA 59.606 41.667 0.00 0.00 39.16 3.32
157 158 3.301116 GTCAGTCGATTTTACACGAGAGC 59.699 47.826 0.00 0.00 39.16 4.09
160 161 3.364023 GGTGTCAGTCGATTTTACACGAG 59.636 47.826 13.72 0.00 41.01 4.18
161 162 3.243468 TGGTGTCAGTCGATTTTACACGA 60.243 43.478 13.72 9.39 41.01 4.35
165 166 3.810941 TGGTTGGTGTCAGTCGATTTTAC 59.189 43.478 0.00 0.00 0.00 2.01
166 167 4.062293 CTGGTTGGTGTCAGTCGATTTTA 58.938 43.478 0.00 0.00 0.00 1.52
169 170 1.691976 TCTGGTTGGTGTCAGTCGATT 59.308 47.619 0.00 0.00 33.13 3.34
170 171 1.338107 TCTGGTTGGTGTCAGTCGAT 58.662 50.000 0.00 0.00 33.13 3.59
171 172 1.000843 CATCTGGTTGGTGTCAGTCGA 59.999 52.381 0.00 0.00 33.13 4.20
172 173 1.432514 CATCTGGTTGGTGTCAGTCG 58.567 55.000 0.00 0.00 33.13 4.18
174 175 0.603707 CGCATCTGGTTGGTGTCAGT 60.604 55.000 0.00 0.00 33.13 3.41
175 176 0.320683 TCGCATCTGGTTGGTGTCAG 60.321 55.000 0.00 0.00 0.00 3.51
177 178 1.453155 ATTCGCATCTGGTTGGTGTC 58.547 50.000 0.00 0.00 0.00 3.67
178 179 1.909700 AATTCGCATCTGGTTGGTGT 58.090 45.000 0.00 0.00 0.00 4.16
179 180 3.302365 AAAATTCGCATCTGGTTGGTG 57.698 42.857 0.00 0.00 0.00 4.17
198 199 7.362920 GGCTGTTGGAGATGCTCTTATTAAAAA 60.363 37.037 0.00 0.00 0.00 1.94
200 201 5.590259 GGCTGTTGGAGATGCTCTTATTAAA 59.410 40.000 0.00 0.00 0.00 1.52
203 204 3.549794 GGCTGTTGGAGATGCTCTTATT 58.450 45.455 0.00 0.00 0.00 1.40
204 205 2.484417 CGGCTGTTGGAGATGCTCTTAT 60.484 50.000 0.00 0.00 0.00 1.73
272 278 1.435515 CGCTGGAGCCACTCTACTC 59.564 63.158 0.00 0.00 37.91 2.59
273 279 2.055042 CCGCTGGAGCCACTCTACT 61.055 63.158 0.00 0.00 37.91 2.57
333 339 2.433664 GTTGGCGATTCGGACCGT 60.434 61.111 14.79 0.00 0.00 4.83
353 359 2.038269 CGCCCCAAATACACAGCGT 61.038 57.895 0.00 0.00 38.81 5.07
411 419 2.063378 GTGGCAGGGAGGAGAGAGG 61.063 68.421 0.00 0.00 0.00 3.69
487 496 3.016613 TAGGATGGGGTGAGCGGGA 62.017 63.158 0.00 0.00 0.00 5.14
539 548 3.561143 AGTTCATGCCCACAAGTTTACA 58.439 40.909 0.00 0.00 0.00 2.41
630 2924 8.986847 CCATATGTTGCATTTTAAACACAGAAA 58.013 29.630 1.24 0.00 39.00 2.52
633 2927 6.368243 TGCCATATGTTGCATTTTAAACACAG 59.632 34.615 1.24 0.00 39.00 3.66
639 2933 5.293814 GTGCATGCCATATGTTGCATTTTAA 59.706 36.000 21.03 6.21 45.52 1.52
640 2934 4.809958 GTGCATGCCATATGTTGCATTTTA 59.190 37.500 21.03 8.51 45.52 1.52
742 3041 1.875963 GTGTCCATCGCCTGGTTTG 59.124 57.895 0.00 0.00 46.08 2.93
754 3053 1.666553 CTACTTTGCCGCGTGTCCA 60.667 57.895 4.92 0.00 0.00 4.02
796 3095 4.192317 ACATTCCGGTTTCTTAGAGCATC 58.808 43.478 0.00 0.00 0.00 3.91
797 3096 4.192317 GACATTCCGGTTTCTTAGAGCAT 58.808 43.478 0.00 0.00 0.00 3.79
799 3098 3.371285 GTGACATTCCGGTTTCTTAGAGC 59.629 47.826 0.00 0.00 0.00 4.09
800 3099 4.566004 TGTGACATTCCGGTTTCTTAGAG 58.434 43.478 0.00 0.00 0.00 2.43
801 3100 4.610605 TGTGACATTCCGGTTTCTTAGA 57.389 40.909 0.00 0.00 0.00 2.10
802 3101 4.755123 AGTTGTGACATTCCGGTTTCTTAG 59.245 41.667 0.00 0.00 0.00 2.18
804 3103 3.551846 AGTTGTGACATTCCGGTTTCTT 58.448 40.909 0.00 0.00 0.00 2.52
805 3104 3.208747 AGTTGTGACATTCCGGTTTCT 57.791 42.857 0.00 0.00 0.00 2.52
806 3105 3.982576 AAGTTGTGACATTCCGGTTTC 57.017 42.857 0.00 0.00 0.00 2.78
807 3106 4.081917 ACAAAAGTTGTGACATTCCGGTTT 60.082 37.500 0.00 0.00 43.48 3.27
808 3107 3.445805 ACAAAAGTTGTGACATTCCGGTT 59.554 39.130 0.00 0.00 43.48 4.44
809 3108 3.020984 ACAAAAGTTGTGACATTCCGGT 58.979 40.909 0.00 0.00 43.48 5.28
810 3109 3.708563 ACAAAAGTTGTGACATTCCGG 57.291 42.857 0.00 0.00 43.48 5.14
811 3110 6.491394 TCTTTACAAAAGTTGTGACATTCCG 58.509 36.000 0.00 0.00 45.03 4.30
812 3111 7.973944 ACTTCTTTACAAAAGTTGTGACATTCC 59.026 33.333 0.00 0.00 45.03 3.01
814 3113 9.783256 GTACTTCTTTACAAAAGTTGTGACATT 57.217 29.630 0.00 0.00 45.03 2.71
815 3114 8.120465 CGTACTTCTTTACAAAAGTTGTGACAT 58.880 33.333 0.00 0.00 45.03 3.06
816 3115 7.413219 CCGTACTTCTTTACAAAAGTTGTGACA 60.413 37.037 0.00 0.00 45.03 3.58
817 3116 6.903479 CCGTACTTCTTTACAAAAGTTGTGAC 59.097 38.462 0.00 0.00 45.03 3.67
818 3117 6.817641 TCCGTACTTCTTTACAAAAGTTGTGA 59.182 34.615 0.00 0.00 45.03 3.58
819 3118 7.007313 TCCGTACTTCTTTACAAAAGTTGTG 57.993 36.000 3.90 0.00 45.03 3.33
821 3120 7.242914 ACTCCGTACTTCTTTACAAAAGTTG 57.757 36.000 0.00 0.00 37.02 3.16
823 3122 9.631452 GTATACTCCGTACTTCTTTACAAAAGT 57.369 33.333 0.00 0.00 39.07 2.66
824 3123 9.630098 TGTATACTCCGTACTTCTTTACAAAAG 57.370 33.333 4.17 0.00 0.00 2.27
829 3128 9.374960 CGTATTGTATACTCCGTACTTCTTTAC 57.625 37.037 4.17 0.00 0.00 2.01
830 3129 8.559536 CCGTATTGTATACTCCGTACTTCTTTA 58.440 37.037 4.17 0.00 0.00 1.85
831 3130 7.420800 CCGTATTGTATACTCCGTACTTCTTT 58.579 38.462 4.17 0.00 0.00 2.52
833 3132 5.049129 GCCGTATTGTATACTCCGTACTTCT 60.049 44.000 4.17 0.00 0.00 2.85
834 3133 5.149977 GCCGTATTGTATACTCCGTACTTC 58.850 45.833 4.17 0.00 0.00 3.01
835 3134 4.319766 CGCCGTATTGTATACTCCGTACTT 60.320 45.833 4.17 0.00 0.00 2.24
837 3136 3.482786 CGCCGTATTGTATACTCCGTAC 58.517 50.000 4.17 1.87 0.00 3.67
838 3137 2.095768 GCGCCGTATTGTATACTCCGTA 60.096 50.000 4.17 0.00 0.00 4.02
839 3138 1.335324 GCGCCGTATTGTATACTCCGT 60.335 52.381 4.17 0.00 0.00 4.69
841 3140 1.670967 GGGCGCCGTATTGTATACTCC 60.671 57.143 22.54 0.00 0.00 3.85
842 3141 1.670967 GGGGCGCCGTATTGTATACTC 60.671 57.143 22.54 0.42 0.00 2.59
843 3142 0.319405 GGGGCGCCGTATTGTATACT 59.681 55.000 22.54 0.00 0.00 2.12
844 3143 0.671472 GGGGGCGCCGTATTGTATAC 60.671 60.000 22.54 1.26 0.00 1.47
846 3145 2.428622 GGGGGCGCCGTATTGTAT 59.571 61.111 22.54 0.00 0.00 2.29
857 3156 3.603671 GAGTAGGTAGCGGGGGCG 61.604 72.222 0.00 0.00 0.00 6.13
858 3157 2.123382 AGAGTAGGTAGCGGGGGC 60.123 66.667 0.00 0.00 0.00 5.80
859 3158 2.499827 GCAGAGTAGGTAGCGGGGG 61.500 68.421 0.00 0.00 0.00 5.40
860 3159 2.499827 GGCAGAGTAGGTAGCGGGG 61.500 68.421 0.00 0.00 0.00 5.73
861 3160 2.499827 GGGCAGAGTAGGTAGCGGG 61.500 68.421 0.00 0.00 0.00 6.13
862 3161 2.499827 GGGGCAGAGTAGGTAGCGG 61.500 68.421 0.00 0.00 0.00 5.52
865 3164 1.689273 GTGATGGGGCAGAGTAGGTAG 59.311 57.143 0.00 0.00 0.00 3.18
866 3165 1.691482 GGTGATGGGGCAGAGTAGGTA 60.691 57.143 0.00 0.00 0.00 3.08
867 3166 0.983378 GGTGATGGGGCAGAGTAGGT 60.983 60.000 0.00 0.00 0.00 3.08
869 3168 0.179000 GTGGTGATGGGGCAGAGTAG 59.821 60.000 0.00 0.00 0.00 2.57
870 3169 1.271840 GGTGGTGATGGGGCAGAGTA 61.272 60.000 0.00 0.00 0.00 2.59
871 3170 2.606587 GGTGGTGATGGGGCAGAGT 61.607 63.158 0.00 0.00 0.00 3.24
872 3171 2.262774 GAGGTGGTGATGGGGCAGAG 62.263 65.000 0.00 0.00 0.00 3.35
873 3172 2.204136 AGGTGGTGATGGGGCAGA 60.204 61.111 0.00 0.00 0.00 4.26
874 3173 1.929860 ATGAGGTGGTGATGGGGCAG 61.930 60.000 0.00 0.00 0.00 4.85
875 3174 1.508667 AATGAGGTGGTGATGGGGCA 61.509 55.000 0.00 0.00 0.00 5.36
878 3177 0.106519 GGGAATGAGGTGGTGATGGG 60.107 60.000 0.00 0.00 0.00 4.00
879 3178 0.106519 GGGGAATGAGGTGGTGATGG 60.107 60.000 0.00 0.00 0.00 3.51
880 3179 0.106519 GGGGGAATGAGGTGGTGATG 60.107 60.000 0.00 0.00 0.00 3.07
881 3180 2.321720 GGGGGAATGAGGTGGTGAT 58.678 57.895 0.00 0.00 0.00 3.06
896 3195 1.683418 GCGGAGTAGGTTAGTGGGGG 61.683 65.000 0.00 0.00 0.00 5.40
898 3197 1.821258 GGCGGAGTAGGTTAGTGGG 59.179 63.158 0.00 0.00 0.00 4.61
899 3198 1.436336 CGGCGGAGTAGGTTAGTGG 59.564 63.158 0.00 0.00 0.00 4.00
901 3200 2.768492 CGCGGCGGAGTAGGTTAGT 61.768 63.158 15.84 0.00 0.00 2.24
903 3202 4.197498 GCGCGGCGGAGTAGGTTA 62.197 66.667 25.03 0.00 0.00 2.85
1040 4037 2.123854 CCCGACCGAGGATCTCCA 60.124 66.667 0.00 0.00 38.89 3.86
1152 4153 1.815840 GTAGAAGAAGCCGGCCAGC 60.816 63.158 26.15 13.20 0.00 4.85
1213 4226 3.116531 GTAGTTGACGGCGTGGCC 61.117 66.667 21.19 3.11 46.75 5.36
1247 4260 2.683475 GGATGTGGGACCAAGGGG 59.317 66.667 0.00 0.00 41.29 4.79
1329 4342 0.657840 GAAACAATCCATCGCGGGAG 59.342 55.000 6.13 0.00 41.08 4.30
1333 4346 2.286418 GGCTAAGAAACAATCCATCGCG 60.286 50.000 0.00 0.00 0.00 5.87
1377 4396 3.687698 AGACCATGTACCGAAAATTTCCG 59.312 43.478 0.00 0.00 0.00 4.30
1404 4423 1.204941 GTGTACTCACTGGTAGCTGGG 59.795 57.143 0.00 0.00 40.98 4.45
1463 4485 3.326747 CTGTCGAAACCCAAGTAAGAGG 58.673 50.000 0.00 0.00 0.00 3.69
1485 4507 0.321671 ACTCCTCGGTGGACACAATG 59.678 55.000 4.69 0.00 40.56 2.82
1487 4509 0.391597 GAACTCCTCGGTGGACACAA 59.608 55.000 4.69 0.00 40.56 3.33
1552 4586 1.001406 CTCACCCCTCTCACAAGTCAC 59.999 57.143 0.00 0.00 0.00 3.67
1554 4588 0.610687 CCTCACCCCTCTCACAAGTC 59.389 60.000 0.00 0.00 0.00 3.01
1622 5097 3.228749 CGCACAAGCTAACTTTGATGTG 58.771 45.455 6.55 6.55 39.10 3.21
1628 5103 1.318576 AAGGCGCACAAGCTAACTTT 58.681 45.000 10.83 0.00 39.10 2.66
1644 5119 2.287368 CGAAAAACTCCGGGTTGAAAGG 60.287 50.000 0.00 0.00 38.29 3.11
1646 5121 1.065851 GCGAAAAACTCCGGGTTGAAA 59.934 47.619 0.00 0.00 38.29 2.69
1647 5122 0.664224 GCGAAAAACTCCGGGTTGAA 59.336 50.000 0.00 0.00 38.29 2.69
1663 5138 3.555324 TGCAGACACCCCTTGCGA 61.555 61.111 0.00 0.00 0.00 5.10
1693 5168 3.117491 ACTATTGCGATCCCAGACATG 57.883 47.619 0.00 0.00 0.00 3.21
1694 5169 3.134623 TCAACTATTGCGATCCCAGACAT 59.865 43.478 0.00 0.00 0.00 3.06
1703 5207 3.562973 CCTTCTGCATCAACTATTGCGAT 59.437 43.478 0.00 0.00 41.80 4.58
1705 5209 2.032550 CCCTTCTGCATCAACTATTGCG 59.967 50.000 0.00 0.00 41.80 4.85
1729 5233 1.338020 GGCCGGATGATTGTCCATTTC 59.662 52.381 5.05 0.00 38.21 2.17
1737 5241 2.828095 TTGGCGGCCGGATGATTG 60.828 61.111 29.38 0.00 0.00 2.67
1749 5260 0.727793 CGAATTTTCGGGTGTTGGCG 60.728 55.000 4.81 0.00 46.30 5.69
1820 5331 2.423290 GATCCTTCTAGACCGCCGGC 62.423 65.000 19.07 19.07 0.00 6.13
1831 5342 4.038271 TGCATTTGTTCCAGATCCTTCT 57.962 40.909 0.00 0.00 0.00 2.85
1839 5353 4.383649 CAGTCGAAAATGCATTTGTTCCAG 59.616 41.667 24.74 12.41 0.00 3.86
1844 5358 6.072508 ACTGATACAGTCGAAAATGCATTTGT 60.073 34.615 24.74 19.06 41.21 2.83
1862 5376 6.653320 TCAACACCAGGAACATAAACTGATAC 59.347 38.462 0.00 0.00 34.21 2.24
1878 5392 4.515191 CCCGTGGATAAATATCAACACCAG 59.485 45.833 8.33 0.74 36.61 4.00
1888 5402 5.995282 GTGAATCACATCCCGTGGATAAATA 59.005 40.000 8.74 0.00 46.36 1.40
1896 5410 2.068942 CGAGGTGAATCACATCCCGTG 61.069 57.143 20.34 4.61 41.33 4.94
1897 5411 0.175760 CGAGGTGAATCACATCCCGT 59.824 55.000 20.34 0.00 41.33 5.28
1908 5428 1.750193 GGATTTGCCATCGAGGTGAA 58.250 50.000 0.00 0.00 40.61 3.18
1915 5438 0.101040 AATGCACGGATTTGCCATCG 59.899 50.000 0.00 0.00 42.25 3.84
1926 5449 1.460359 GCAACAATTTCCAATGCACGG 59.540 47.619 0.00 0.00 37.00 4.94
1966 5489 3.594134 CTGAAACATCTTCTTCGGAGCT 58.406 45.455 0.00 0.00 30.75 4.09
2023 5546 7.961827 GCTATAAAGAAGATCATATTGCTGTGC 59.038 37.037 0.00 0.00 0.00 4.57
2026 5549 9.433153 TGAGCTATAAAGAAGATCATATTGCTG 57.567 33.333 12.80 0.00 37.11 4.41
2169 5699 1.457643 CCATCCAGAGGTAGGCGGA 60.458 63.158 0.00 0.00 0.00 5.54
2179 5727 0.106708 GCCGTATTGCTCCATCCAGA 59.893 55.000 0.00 0.00 0.00 3.86
2221 5790 4.527816 TGCCCAACTTTTAATCAGCAGAAT 59.472 37.500 0.00 0.00 0.00 2.40
2305 5895 7.222872 TGAAGTTGGCATTTTTCCATAACAAT 58.777 30.769 0.00 0.00 32.92 2.71
2315 5910 8.040727 AGACTTAAAACTGAAGTTGGCATTTTT 58.959 29.630 0.00 0.00 37.27 1.94
2336 5931 6.085555 TGAAAACGAGTACAGATCAGACTT 57.914 37.500 0.00 0.00 0.00 3.01
2340 5935 9.605955 CTAGATATGAAAACGAGTACAGATCAG 57.394 37.037 0.00 0.00 34.69 2.90
2353 6299 4.806247 AGCGACAGTGCTAGATATGAAAAC 59.194 41.667 0.00 0.00 45.14 2.43
2374 6320 1.538687 AAGGGAAACATGCAGCCAGC 61.539 55.000 0.00 0.00 45.96 4.85
2487 6927 5.859205 ACAGAGATAGCATGTACATGTCA 57.141 39.130 31.10 21.37 40.80 3.58
2532 6998 3.896888 TCAAAGAACCAACCAATGCAGAT 59.103 39.130 0.00 0.00 0.00 2.90
2543 7009 5.929992 CACCTACGTAGAATCAAAGAACCAA 59.070 40.000 24.15 0.00 0.00 3.67
2544 7010 5.011329 ACACCTACGTAGAATCAAAGAACCA 59.989 40.000 24.15 0.00 0.00 3.67
2545 7011 5.476614 ACACCTACGTAGAATCAAAGAACC 58.523 41.667 24.15 0.00 0.00 3.62
2546 7012 7.288672 CAAACACCTACGTAGAATCAAAGAAC 58.711 38.462 24.15 0.00 0.00 3.01
2547 7013 6.073440 GCAAACACCTACGTAGAATCAAAGAA 60.073 38.462 24.15 0.00 0.00 2.52
2548 7014 5.407387 GCAAACACCTACGTAGAATCAAAGA 59.593 40.000 24.15 0.00 0.00 2.52
2549 7015 5.178623 TGCAAACACCTACGTAGAATCAAAG 59.821 40.000 24.15 7.63 0.00 2.77
2550 7016 5.057819 TGCAAACACCTACGTAGAATCAAA 58.942 37.500 24.15 0.00 0.00 2.69
2551 7017 4.633175 TGCAAACACCTACGTAGAATCAA 58.367 39.130 24.15 0.00 0.00 2.57
2552 7018 4.260139 TGCAAACACCTACGTAGAATCA 57.740 40.909 24.15 8.47 0.00 2.57
2553 7019 5.796350 AATGCAAACACCTACGTAGAATC 57.204 39.130 24.15 6.16 0.00 2.52
2554 7020 5.938125 AGAAATGCAAACACCTACGTAGAAT 59.062 36.000 24.15 8.77 0.00 2.40
2555 7021 5.302360 AGAAATGCAAACACCTACGTAGAA 58.698 37.500 24.15 0.00 0.00 2.10
2556 7022 4.890088 AGAAATGCAAACACCTACGTAGA 58.110 39.130 24.15 1.27 0.00 2.59
2557 7023 6.183360 CCTTAGAAATGCAAACACCTACGTAG 60.183 42.308 15.92 15.92 0.00 3.51
2558 7024 5.640357 CCTTAGAAATGCAAACACCTACGTA 59.360 40.000 0.00 0.00 0.00 3.57
2559 7025 4.454504 CCTTAGAAATGCAAACACCTACGT 59.545 41.667 0.00 0.00 0.00 3.57
2560 7026 4.454504 ACCTTAGAAATGCAAACACCTACG 59.545 41.667 0.00 0.00 0.00 3.51
2561 7027 5.959618 ACCTTAGAAATGCAAACACCTAC 57.040 39.130 0.00 0.00 0.00 3.18
2562 7028 6.969993 AAACCTTAGAAATGCAAACACCTA 57.030 33.333 0.00 0.00 0.00 3.08
2563 7029 5.869649 AAACCTTAGAAATGCAAACACCT 57.130 34.783 0.00 0.00 0.00 4.00
2564 7030 5.924254 GGTAAACCTTAGAAATGCAAACACC 59.076 40.000 0.00 0.00 0.00 4.16
2565 7031 6.640907 CAGGTAAACCTTAGAAATGCAAACAC 59.359 38.462 0.00 0.00 46.09 3.32
2566 7032 6.547880 TCAGGTAAACCTTAGAAATGCAAACA 59.452 34.615 0.00 0.00 46.09 2.83
2567 7033 6.977213 TCAGGTAAACCTTAGAAATGCAAAC 58.023 36.000 0.00 0.00 46.09 2.93
2568 7034 7.775053 ATCAGGTAAACCTTAGAAATGCAAA 57.225 32.000 0.00 0.00 46.09 3.68
2576 7042 8.449625 AGCTAGAGATATCAGGTAAACCTTAGA 58.550 37.037 5.32 0.00 46.09 2.10
2582 7048 8.817092 ATCCTAGCTAGAGATATCAGGTAAAC 57.183 38.462 22.70 0.00 0.00 2.01
2586 7052 7.038531 TGAATCCTAGCTAGAGATATCAGGT 57.961 40.000 22.70 6.88 0.00 4.00
2588 7054 9.851686 AGTATGAATCCTAGCTAGAGATATCAG 57.148 37.037 22.70 2.72 0.00 2.90
2593 7059 6.717289 ACGAGTATGAATCCTAGCTAGAGAT 58.283 40.000 22.70 18.23 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.