Multiple sequence alignment - TraesCS7D01G473800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G473800 chr7D 100.000 2795 0 0 1 2795 586699525 586702319 0.000000e+00 5162.0
1 TraesCS7D01G473800 chr7D 82.578 1963 211 65 502 2421 586502059 586500185 0.000000e+00 1609.0
2 TraesCS7D01G473800 chr7D 77.980 2139 315 84 689 2749 586508922 586506862 0.000000e+00 1197.0
3 TraesCS7D01G473800 chr7D 81.431 1384 221 24 689 2055 586708185 586709549 0.000000e+00 1099.0
4 TraesCS7D01G473800 chr7D 76.631 1395 241 44 689 2047 586754350 586755695 0.000000e+00 691.0
5 TraesCS7D01G473800 chr7B 91.641 2309 135 27 502 2792 657084450 657086718 0.000000e+00 3142.0
6 TraesCS7D01G473800 chr7B 83.092 1520 211 26 689 2193 657663279 657661791 0.000000e+00 1341.0
7 TraesCS7D01G473800 chr7B 81.579 1520 204 35 689 2196 656529585 656528130 0.000000e+00 1186.0
8 TraesCS7D01G473800 chr7B 80.702 1539 243 35 689 2193 657313575 657315093 0.000000e+00 1147.0
9 TraesCS7D01G473800 chr7B 78.322 1633 263 49 689 2269 656928801 656930394 0.000000e+00 970.0
10 TraesCS7D01G473800 chr7B 83.562 584 58 23 2141 2701 656550855 656550287 1.920000e-141 512.0
11 TraesCS7D01G473800 chr7B 74.492 1329 243 58 584 1854 656552273 656550983 3.240000e-134 488.0
12 TraesCS7D01G473800 chr7B 87.067 433 42 13 2321 2749 656550288 656549866 7.000000e-131 477.0
13 TraesCS7D01G473800 chr7B 82.839 472 54 10 2130 2579 731586078 731585612 5.610000e-107 398.0
14 TraesCS7D01G473800 chr7B 86.849 365 35 10 2321 2680 657077963 657078319 2.020000e-106 396.0
15 TraesCS7D01G473800 chr7B 74.444 900 169 38 1264 2128 657339840 657340713 5.770000e-87 331.0
16 TraesCS7D01G473800 chr7B 89.912 228 19 2 2332 2559 610766500 610766277 9.790000e-75 291.0
17 TraesCS7D01G473800 chr7B 89.177 231 21 2 2329 2559 551208165 551208391 4.560000e-73 285.0
18 TraesCS7D01G473800 chr7B 85.714 63 6 2 262 324 12955900 12955959 2.320000e-06 63.9
19 TraesCS7D01G473800 chr7B 87.755 49 6 0 259 307 711004647 711004695 1.080000e-04 58.4
20 TraesCS7D01G473800 chr7A 94.823 1526 60 6 613 2134 677825260 677826770 0.000000e+00 2362.0
21 TraesCS7D01G473800 chr7A 82.875 1600 237 22 612 2193 678146284 678144704 0.000000e+00 1402.0
22 TraesCS7D01G473800 chr7A 79.355 2078 280 70 689 2680 677821388 677823402 0.000000e+00 1323.0
23 TraesCS7D01G473800 chr7A 78.659 2132 297 86 689 2745 677723722 677721674 0.000000e+00 1271.0
24 TraesCS7D01G473800 chr7A 79.693 1305 229 21 689 1975 677833050 677834336 0.000000e+00 909.0
25 TraesCS7D01G473800 chr7A 76.358 1510 260 52 689 2152 677839001 677840459 0.000000e+00 721.0
26 TraesCS7D01G473800 chr7A 85.714 56 8 0 259 314 709677385 709677440 3.010000e-05 60.2
27 TraesCS7D01G473800 chr4B 89.912 228 19 2 2332 2559 366572865 366572642 9.790000e-75 291.0
28 TraesCS7D01G473800 chr1B 89.610 231 20 2 2329 2559 447990103 447990329 9.790000e-75 291.0
29 TraesCS7D01G473800 chr6A 93.103 58 4 0 2212 2269 11933754 11933697 4.960000e-13 86.1
30 TraesCS7D01G473800 chr4A 97.297 37 1 0 280 316 690416039 690416075 2.320000e-06 63.9
31 TraesCS7D01G473800 chrUn 100.000 29 0 0 279 307 386260224 386260252 1.000000e-03 54.7
32 TraesCS7D01G473800 chr2B 100.000 29 0 0 279 307 714254230 714254202 1.000000e-03 54.7
33 TraesCS7D01G473800 chr2B 100.000 29 0 0 279 307 714254628 714254600 1.000000e-03 54.7
34 TraesCS7D01G473800 chr2B 100.000 29 0 0 279 307 714309624 714309596 1.000000e-03 54.7
35 TraesCS7D01G473800 chr2A 100.000 29 0 0 280 308 565074390 565074362 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G473800 chr7D 586699525 586702319 2794 False 5162.000000 5162 100.000 1 2795 1 chr7D.!!$F1 2794
1 TraesCS7D01G473800 chr7D 586500185 586502059 1874 True 1609.000000 1609 82.578 502 2421 1 chr7D.!!$R1 1919
2 TraesCS7D01G473800 chr7D 586506862 586508922 2060 True 1197.000000 1197 77.980 689 2749 1 chr7D.!!$R2 2060
3 TraesCS7D01G473800 chr7D 586708185 586709549 1364 False 1099.000000 1099 81.431 689 2055 1 chr7D.!!$F2 1366
4 TraesCS7D01G473800 chr7D 586754350 586755695 1345 False 691.000000 691 76.631 689 2047 1 chr7D.!!$F3 1358
5 TraesCS7D01G473800 chr7B 657084450 657086718 2268 False 3142.000000 3142 91.641 502 2792 1 chr7B.!!$F5 2290
6 TraesCS7D01G473800 chr7B 657661791 657663279 1488 True 1341.000000 1341 83.092 689 2193 1 chr7B.!!$R3 1504
7 TraesCS7D01G473800 chr7B 656528130 656529585 1455 True 1186.000000 1186 81.579 689 2196 1 chr7B.!!$R2 1507
8 TraesCS7D01G473800 chr7B 657313575 657315093 1518 False 1147.000000 1147 80.702 689 2193 1 chr7B.!!$F6 1504
9 TraesCS7D01G473800 chr7B 656928801 656930394 1593 False 970.000000 970 78.322 689 2269 1 chr7B.!!$F3 1580
10 TraesCS7D01G473800 chr7B 656549866 656552273 2407 True 492.333333 512 81.707 584 2749 3 chr7B.!!$R5 2165
11 TraesCS7D01G473800 chr7B 657339840 657340713 873 False 331.000000 331 74.444 1264 2128 1 chr7B.!!$F7 864
12 TraesCS7D01G473800 chr7A 677821388 677826770 5382 False 1842.500000 2362 87.089 613 2680 2 chr7A.!!$F4 2067
13 TraesCS7D01G473800 chr7A 678144704 678146284 1580 True 1402.000000 1402 82.875 612 2193 1 chr7A.!!$R2 1581
14 TraesCS7D01G473800 chr7A 677721674 677723722 2048 True 1271.000000 1271 78.659 689 2745 1 chr7A.!!$R1 2056
15 TraesCS7D01G473800 chr7A 677833050 677834336 1286 False 909.000000 909 79.693 689 1975 1 chr7A.!!$F1 1286
16 TraesCS7D01G473800 chr7A 677839001 677840459 1458 False 721.000000 721 76.358 689 2152 1 chr7A.!!$F2 1463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.108615 GCCTCTCGTTCTAGCAAGCA 60.109 55.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 6004 0.252696 AGTACCTCACCCATGGCTGA 60.253 55.0 6.09 8.05 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.209812 CGGAGGGCTCGTCGATGA 61.210 66.667 7.21 7.21 0.00 2.92
19 20 2.556459 CGGAGGGCTCGTCGATGAT 61.556 63.158 7.99 0.00 0.00 2.45
20 21 1.287503 GGAGGGCTCGTCGATGATC 59.712 63.158 7.99 3.58 0.00 2.92
21 22 1.456196 GGAGGGCTCGTCGATGATCA 61.456 60.000 7.99 0.00 0.00 2.92
22 23 0.385751 GAGGGCTCGTCGATGATCAA 59.614 55.000 7.99 0.00 0.00 2.57
23 24 1.000283 GAGGGCTCGTCGATGATCAAT 60.000 52.381 7.99 0.00 0.00 2.57
24 25 1.143305 GGGCTCGTCGATGATCAATG 58.857 55.000 7.99 0.00 0.00 2.82
25 26 1.539065 GGGCTCGTCGATGATCAATGT 60.539 52.381 7.99 0.00 0.00 2.71
26 27 1.524355 GGCTCGTCGATGATCAATGTG 59.476 52.381 7.99 0.00 0.00 3.21
27 28 1.524355 GCTCGTCGATGATCAATGTGG 59.476 52.381 7.99 0.00 0.00 4.17
28 29 2.799562 GCTCGTCGATGATCAATGTGGA 60.800 50.000 7.99 0.00 0.00 4.02
29 30 3.646946 CTCGTCGATGATCAATGTGGAT 58.353 45.455 7.99 0.00 0.00 3.41
30 31 3.383761 TCGTCGATGATCAATGTGGATG 58.616 45.455 2.39 0.00 0.00 3.51
31 32 2.096565 CGTCGATGATCAATGTGGATGC 60.097 50.000 0.00 0.00 0.00 3.91
32 33 3.136763 GTCGATGATCAATGTGGATGCT 58.863 45.455 0.00 0.00 0.00 3.79
33 34 3.059120 GTCGATGATCAATGTGGATGCTG 60.059 47.826 0.00 0.00 0.00 4.41
34 35 2.876550 CGATGATCAATGTGGATGCTGT 59.123 45.455 0.00 0.00 0.00 4.40
35 36 3.303791 CGATGATCAATGTGGATGCTGTG 60.304 47.826 0.00 0.00 0.00 3.66
36 37 3.353370 TGATCAATGTGGATGCTGTGA 57.647 42.857 0.00 0.00 0.00 3.58
37 38 3.893521 TGATCAATGTGGATGCTGTGAT 58.106 40.909 0.00 0.00 0.00 3.06
38 39 4.274978 TGATCAATGTGGATGCTGTGATT 58.725 39.130 0.00 0.00 0.00 2.57
39 40 4.707934 TGATCAATGTGGATGCTGTGATTT 59.292 37.500 0.00 0.00 0.00 2.17
40 41 5.186215 TGATCAATGTGGATGCTGTGATTTT 59.814 36.000 0.00 0.00 0.00 1.82
41 42 5.471556 TCAATGTGGATGCTGTGATTTTT 57.528 34.783 0.00 0.00 0.00 1.94
84 85 9.889128 TTTTTGAGATTTTTCAGAATCCTGTTT 57.111 25.926 0.00 0.00 41.16 2.83
85 86 9.533253 TTTTGAGATTTTTCAGAATCCTGTTTC 57.467 29.630 0.00 0.00 41.16 2.78
86 87 7.822161 TGAGATTTTTCAGAATCCTGTTTCA 57.178 32.000 0.00 0.00 41.16 2.69
87 88 8.413309 TGAGATTTTTCAGAATCCTGTTTCAT 57.587 30.769 0.00 0.00 41.16 2.57
88 89 9.519191 TGAGATTTTTCAGAATCCTGTTTCATA 57.481 29.630 0.00 0.00 41.16 2.15
89 90 9.780413 GAGATTTTTCAGAATCCTGTTTCATAC 57.220 33.333 0.00 0.00 41.16 2.39
90 91 9.525826 AGATTTTTCAGAATCCTGTTTCATACT 57.474 29.630 0.00 0.00 41.16 2.12
93 94 9.793259 TTTTTCAGAATCCTGTTTCATACTAGT 57.207 29.630 0.00 0.00 41.16 2.57
95 96 9.871238 TTTCAGAATCCTGTTTCATACTAGTAC 57.129 33.333 4.31 0.00 41.16 2.73
96 97 8.008513 TCAGAATCCTGTTTCATACTAGTACC 57.991 38.462 4.31 0.00 41.16 3.34
97 98 7.839705 TCAGAATCCTGTTTCATACTAGTACCT 59.160 37.037 4.31 0.00 41.16 3.08
98 99 9.132923 CAGAATCCTGTTTCATACTAGTACCTA 57.867 37.037 4.31 0.00 35.70 3.08
99 100 9.357161 AGAATCCTGTTTCATACTAGTACCTAG 57.643 37.037 4.31 0.00 39.72 3.02
100 101 6.956202 TCCTGTTTCATACTAGTACCTAGC 57.044 41.667 4.31 0.00 37.57 3.42
101 102 5.832060 TCCTGTTTCATACTAGTACCTAGCC 59.168 44.000 4.31 0.00 37.57 3.93
102 103 5.834204 CCTGTTTCATACTAGTACCTAGCCT 59.166 44.000 4.31 0.00 37.57 4.58
103 104 6.016108 CCTGTTTCATACTAGTACCTAGCCTC 60.016 46.154 4.31 0.00 37.57 4.70
104 105 6.670617 TGTTTCATACTAGTACCTAGCCTCT 58.329 40.000 4.31 0.00 37.57 3.69
105 106 6.771749 TGTTTCATACTAGTACCTAGCCTCTC 59.228 42.308 4.31 0.00 37.57 3.20
106 107 5.149973 TCATACTAGTACCTAGCCTCTCG 57.850 47.826 4.31 0.00 37.57 4.04
107 108 4.592351 TCATACTAGTACCTAGCCTCTCGT 59.408 45.833 4.31 0.00 37.57 4.18
108 109 3.929955 ACTAGTACCTAGCCTCTCGTT 57.070 47.619 0.00 0.00 37.57 3.85
109 110 3.807553 ACTAGTACCTAGCCTCTCGTTC 58.192 50.000 0.00 0.00 37.57 3.95
110 111 3.455543 ACTAGTACCTAGCCTCTCGTTCT 59.544 47.826 0.00 0.00 37.57 3.01
111 112 4.653341 ACTAGTACCTAGCCTCTCGTTCTA 59.347 45.833 0.00 0.00 37.57 2.10
112 113 4.075963 AGTACCTAGCCTCTCGTTCTAG 57.924 50.000 0.00 0.00 0.00 2.43
113 114 1.682740 ACCTAGCCTCTCGTTCTAGC 58.317 55.000 0.00 0.00 0.00 3.42
114 115 1.064611 ACCTAGCCTCTCGTTCTAGCA 60.065 52.381 0.00 0.00 0.00 3.49
115 116 2.025155 CCTAGCCTCTCGTTCTAGCAA 58.975 52.381 0.00 0.00 0.00 3.91
116 117 2.034053 CCTAGCCTCTCGTTCTAGCAAG 59.966 54.545 0.00 0.00 0.00 4.01
117 118 0.174617 AGCCTCTCGTTCTAGCAAGC 59.825 55.000 0.00 0.00 0.00 4.01
118 119 0.108615 GCCTCTCGTTCTAGCAAGCA 60.109 55.000 0.00 0.00 0.00 3.91
119 120 1.919918 CCTCTCGTTCTAGCAAGCAG 58.080 55.000 0.00 0.00 0.00 4.24
120 121 1.276415 CTCTCGTTCTAGCAAGCAGC 58.724 55.000 0.00 0.00 46.19 5.25
129 130 2.033141 GCAAGCAGCCTCCTGTGA 59.967 61.111 0.00 0.00 41.26 3.58
130 131 2.039405 GCAAGCAGCCTCCTGTGAG 61.039 63.158 0.00 0.00 41.26 3.51
131 132 2.039405 CAAGCAGCCTCCTGTGAGC 61.039 63.158 0.00 0.00 41.26 4.26
132 133 2.523285 AAGCAGCCTCCTGTGAGCA 61.523 57.895 0.00 0.00 41.26 4.26
133 134 2.744768 AAGCAGCCTCCTGTGAGCAC 62.745 60.000 0.00 0.00 41.26 4.40
134 135 2.433838 CAGCCTCCTGTGAGCACG 60.434 66.667 0.00 0.00 37.29 5.34
135 136 2.601666 AGCCTCCTGTGAGCACGA 60.602 61.111 0.00 0.00 37.29 4.35
136 137 2.210013 AGCCTCCTGTGAGCACGAA 61.210 57.895 0.00 0.00 37.29 3.85
137 138 1.078848 GCCTCCTGTGAGCACGAAT 60.079 57.895 0.00 0.00 37.29 3.34
138 139 1.086634 GCCTCCTGTGAGCACGAATC 61.087 60.000 0.00 0.00 37.29 2.52
139 140 0.247460 CCTCCTGTGAGCACGAATCA 59.753 55.000 0.00 0.00 37.29 2.57
140 141 1.638133 CTCCTGTGAGCACGAATCAG 58.362 55.000 0.00 0.00 0.00 2.90
141 142 0.390340 TCCTGTGAGCACGAATCAGC 60.390 55.000 0.00 0.00 0.00 4.26
142 143 0.390866 CCTGTGAGCACGAATCAGCT 60.391 55.000 0.00 0.00 45.25 4.24
146 147 2.973899 AGCACGAATCAGCTCCGT 59.026 55.556 0.00 0.00 36.00 4.69
147 148 1.153745 AGCACGAATCAGCTCCGTC 60.154 57.895 0.00 0.00 36.00 4.79
148 149 1.153745 GCACGAATCAGCTCCGTCT 60.154 57.895 0.00 0.00 33.96 4.18
149 150 1.142778 GCACGAATCAGCTCCGTCTC 61.143 60.000 0.00 0.00 33.96 3.36
150 151 0.453793 CACGAATCAGCTCCGTCTCT 59.546 55.000 0.00 0.00 33.96 3.10
151 152 1.671328 CACGAATCAGCTCCGTCTCTA 59.329 52.381 0.00 0.00 33.96 2.43
152 153 1.944024 ACGAATCAGCTCCGTCTCTAG 59.056 52.381 0.00 0.00 29.82 2.43
153 154 1.944024 CGAATCAGCTCCGTCTCTAGT 59.056 52.381 0.00 0.00 0.00 2.57
154 155 2.356382 CGAATCAGCTCCGTCTCTAGTT 59.644 50.000 0.00 0.00 0.00 2.24
155 156 3.181495 CGAATCAGCTCCGTCTCTAGTTT 60.181 47.826 0.00 0.00 0.00 2.66
156 157 4.675671 CGAATCAGCTCCGTCTCTAGTTTT 60.676 45.833 0.00 0.00 0.00 2.43
157 158 3.851976 TCAGCTCCGTCTCTAGTTTTC 57.148 47.619 0.00 0.00 0.00 2.29
158 159 2.492484 TCAGCTCCGTCTCTAGTTTTCC 59.508 50.000 0.00 0.00 0.00 3.13
159 160 1.473278 AGCTCCGTCTCTAGTTTTCCG 59.527 52.381 0.00 0.00 0.00 4.30
160 161 1.910688 CTCCGTCTCTAGTTTTCCGC 58.089 55.000 0.00 0.00 0.00 5.54
161 162 0.529378 TCCGTCTCTAGTTTTCCGCC 59.471 55.000 0.00 0.00 0.00 6.13
162 163 0.801067 CCGTCTCTAGTTTTCCGCCG 60.801 60.000 0.00 0.00 0.00 6.46
163 164 0.169672 CGTCTCTAGTTTTCCGCCGA 59.830 55.000 0.00 0.00 0.00 5.54
164 165 1.401931 CGTCTCTAGTTTTCCGCCGAA 60.402 52.381 0.00 0.00 0.00 4.30
165 166 2.260481 GTCTCTAGTTTTCCGCCGAAG 58.740 52.381 0.00 0.00 0.00 3.79
166 167 1.000145 CTCTAGTTTTCCGCCGAAGC 59.000 55.000 0.00 0.00 0.00 3.86
167 168 0.390735 TCTAGTTTTCCGCCGAAGCC 60.391 55.000 0.00 0.00 34.57 4.35
168 169 0.391263 CTAGTTTTCCGCCGAAGCCT 60.391 55.000 0.00 0.00 34.57 4.58
169 170 0.896923 TAGTTTTCCGCCGAAGCCTA 59.103 50.000 0.00 0.00 34.57 3.93
170 171 0.391263 AGTTTTCCGCCGAAGCCTAG 60.391 55.000 0.00 0.00 34.57 3.02
171 172 0.672711 GTTTTCCGCCGAAGCCTAGT 60.673 55.000 0.00 0.00 34.57 2.57
172 173 0.390735 TTTTCCGCCGAAGCCTAGTC 60.391 55.000 0.00 0.00 34.57 2.59
173 174 2.234913 TTTCCGCCGAAGCCTAGTCC 62.235 60.000 0.00 0.00 34.57 3.85
174 175 3.458163 CCGCCGAAGCCTAGTCCA 61.458 66.667 0.00 0.00 34.57 4.02
175 176 2.577059 CGCCGAAGCCTAGTCCAA 59.423 61.111 0.00 0.00 34.57 3.53
176 177 1.079405 CGCCGAAGCCTAGTCCAAA 60.079 57.895 0.00 0.00 34.57 3.28
177 178 0.672401 CGCCGAAGCCTAGTCCAAAA 60.672 55.000 0.00 0.00 34.57 2.44
178 179 1.751437 GCCGAAGCCTAGTCCAAAAT 58.249 50.000 0.00 0.00 0.00 1.82
179 180 1.671328 GCCGAAGCCTAGTCCAAAATC 59.329 52.381 0.00 0.00 0.00 2.17
180 181 2.939640 GCCGAAGCCTAGTCCAAAATCA 60.940 50.000 0.00 0.00 0.00 2.57
181 182 3.545703 CCGAAGCCTAGTCCAAAATCAT 58.454 45.455 0.00 0.00 0.00 2.45
182 183 3.313526 CCGAAGCCTAGTCCAAAATCATG 59.686 47.826 0.00 0.00 0.00 3.07
183 184 3.313526 CGAAGCCTAGTCCAAAATCATGG 59.686 47.826 0.00 0.00 42.12 3.66
193 194 4.834534 TCCAAAATCATGGAAAATGGCTG 58.165 39.130 0.00 0.00 46.36 4.85
194 195 3.942748 CCAAAATCATGGAAAATGGCTGG 59.057 43.478 0.00 0.00 43.54 4.85
195 196 4.323638 CCAAAATCATGGAAAATGGCTGGA 60.324 41.667 0.00 0.00 43.54 3.86
196 197 5.247084 CAAAATCATGGAAAATGGCTGGAA 58.753 37.500 0.00 0.00 0.00 3.53
197 198 5.502089 AAATCATGGAAAATGGCTGGAAA 57.498 34.783 0.00 0.00 0.00 3.13
198 199 5.502089 AATCATGGAAAATGGCTGGAAAA 57.498 34.783 0.00 0.00 0.00 2.29
199 200 4.970860 TCATGGAAAATGGCTGGAAAAA 57.029 36.364 0.00 0.00 0.00 1.94
218 219 3.851976 AAAGTAGCAGTACTCACCTCG 57.148 47.619 0.00 0.00 38.66 4.63
219 220 2.783609 AGTAGCAGTACTCACCTCGA 57.216 50.000 0.00 0.00 34.00 4.04
220 221 3.284793 AGTAGCAGTACTCACCTCGAT 57.715 47.619 0.00 0.00 34.00 3.59
221 222 3.207778 AGTAGCAGTACTCACCTCGATC 58.792 50.000 0.00 0.00 34.00 3.69
222 223 1.394618 AGCAGTACTCACCTCGATCC 58.605 55.000 0.00 0.00 0.00 3.36
223 224 1.103803 GCAGTACTCACCTCGATCCA 58.896 55.000 0.00 0.00 0.00 3.41
224 225 1.683917 GCAGTACTCACCTCGATCCAT 59.316 52.381 0.00 0.00 0.00 3.41
225 226 2.885266 GCAGTACTCACCTCGATCCATA 59.115 50.000 0.00 0.00 0.00 2.74
226 227 3.304794 GCAGTACTCACCTCGATCCATAC 60.305 52.174 0.00 0.00 0.00 2.39
227 228 4.138290 CAGTACTCACCTCGATCCATACT 58.862 47.826 0.00 0.00 0.00 2.12
228 229 4.023622 CAGTACTCACCTCGATCCATACTG 60.024 50.000 0.00 0.00 34.23 2.74
229 230 1.683917 ACTCACCTCGATCCATACTGC 59.316 52.381 0.00 0.00 0.00 4.40
230 231 1.959985 CTCACCTCGATCCATACTGCT 59.040 52.381 0.00 0.00 0.00 4.24
231 232 2.363680 CTCACCTCGATCCATACTGCTT 59.636 50.000 0.00 0.00 0.00 3.91
232 233 2.101415 TCACCTCGATCCATACTGCTTG 59.899 50.000 0.00 0.00 0.00 4.01
233 234 2.111384 ACCTCGATCCATACTGCTTGT 58.889 47.619 0.00 0.00 0.00 3.16
234 235 2.101582 ACCTCGATCCATACTGCTTGTC 59.898 50.000 0.00 0.00 0.00 3.18
235 236 2.389059 CTCGATCCATACTGCTTGTCG 58.611 52.381 0.00 0.00 0.00 4.35
236 237 1.067060 TCGATCCATACTGCTTGTCGG 59.933 52.381 0.00 0.00 0.00 4.79
237 238 1.067060 CGATCCATACTGCTTGTCGGA 59.933 52.381 0.00 0.00 35.61 4.55
238 239 2.748605 GATCCATACTGCTTGTCGGAG 58.251 52.381 0.00 0.00 34.92 4.63
239 240 1.557099 TCCATACTGCTTGTCGGAGT 58.443 50.000 0.00 0.00 46.78 3.85
240 241 1.899814 TCCATACTGCTTGTCGGAGTT 59.100 47.619 0.00 0.00 42.11 3.01
241 242 2.301870 TCCATACTGCTTGTCGGAGTTT 59.698 45.455 0.00 0.00 42.11 2.66
242 243 3.074412 CCATACTGCTTGTCGGAGTTTT 58.926 45.455 0.00 0.00 42.11 2.43
243 244 4.020928 TCCATACTGCTTGTCGGAGTTTTA 60.021 41.667 0.00 0.00 42.11 1.52
244 245 4.330074 CCATACTGCTTGTCGGAGTTTTAG 59.670 45.833 0.00 0.00 42.11 1.85
245 246 3.470645 ACTGCTTGTCGGAGTTTTAGT 57.529 42.857 0.00 0.00 42.11 2.24
246 247 4.595762 ACTGCTTGTCGGAGTTTTAGTA 57.404 40.909 0.00 0.00 42.11 1.82
247 248 4.304939 ACTGCTTGTCGGAGTTTTAGTAC 58.695 43.478 0.00 0.00 42.11 2.73
248 249 4.038883 ACTGCTTGTCGGAGTTTTAGTACT 59.961 41.667 0.00 0.00 42.11 2.73
249 250 5.242393 ACTGCTTGTCGGAGTTTTAGTACTA 59.758 40.000 0.00 0.00 42.11 1.82
250 251 5.706916 TGCTTGTCGGAGTTTTAGTACTAG 58.293 41.667 2.23 0.00 0.00 2.57
251 252 5.242393 TGCTTGTCGGAGTTTTAGTACTAGT 59.758 40.000 0.00 0.00 0.00 2.57
252 253 6.430925 TGCTTGTCGGAGTTTTAGTACTAGTA 59.569 38.462 2.23 0.00 0.00 1.82
253 254 7.121759 TGCTTGTCGGAGTTTTAGTACTAGTAT 59.878 37.037 5.75 0.00 0.00 2.12
254 255 8.616076 GCTTGTCGGAGTTTTAGTACTAGTATA 58.384 37.037 5.75 0.00 0.00 1.47
280 281 7.347508 ACTATAAAGTTGTACTCAAGTTGCG 57.652 36.000 0.00 0.00 43.69 4.85
281 282 7.149973 ACTATAAAGTTGTACTCAAGTTGCGA 58.850 34.615 0.00 0.00 43.69 5.10
282 283 4.531659 AAAGTTGTACTCAAGTTGCGAC 57.468 40.909 0.00 0.00 43.69 5.19
283 284 3.173668 AGTTGTACTCAAGTTGCGACA 57.826 42.857 6.90 0.37 33.97 4.35
284 285 3.527533 AGTTGTACTCAAGTTGCGACAA 58.472 40.909 6.90 6.43 33.97 3.18
285 286 3.555956 AGTTGTACTCAAGTTGCGACAAG 59.444 43.478 6.90 3.37 33.97 3.16
286 287 3.173668 TGTACTCAAGTTGCGACAAGT 57.826 42.857 6.90 9.14 0.00 3.16
287 288 4.310357 TGTACTCAAGTTGCGACAAGTA 57.690 40.909 6.90 8.18 0.00 2.24
288 289 4.684877 TGTACTCAAGTTGCGACAAGTAA 58.315 39.130 6.90 1.04 0.00 2.24
289 290 5.294356 TGTACTCAAGTTGCGACAAGTAAT 58.706 37.500 6.90 0.00 0.00 1.89
290 291 6.448852 TGTACTCAAGTTGCGACAAGTAATA 58.551 36.000 6.90 2.21 0.00 0.98
291 292 7.094631 TGTACTCAAGTTGCGACAAGTAATAT 58.905 34.615 6.90 0.00 0.00 1.28
292 293 6.408858 ACTCAAGTTGCGACAAGTAATATG 57.591 37.500 6.90 0.00 0.00 1.78
293 294 6.163476 ACTCAAGTTGCGACAAGTAATATGA 58.837 36.000 6.90 0.00 0.00 2.15
294 295 6.649141 ACTCAAGTTGCGACAAGTAATATGAA 59.351 34.615 6.90 0.00 0.00 2.57
295 296 7.334421 ACTCAAGTTGCGACAAGTAATATGAAT 59.666 33.333 6.90 0.00 0.00 2.57
296 297 8.710835 TCAAGTTGCGACAAGTAATATGAATA 57.289 30.769 6.90 0.00 0.00 1.75
297 298 8.817100 TCAAGTTGCGACAAGTAATATGAATAG 58.183 33.333 6.90 0.00 0.00 1.73
298 299 7.715265 AGTTGCGACAAGTAATATGAATAGG 57.285 36.000 6.90 0.00 0.00 2.57
299 300 7.497595 AGTTGCGACAAGTAATATGAATAGGA 58.502 34.615 6.90 0.00 0.00 2.94
300 301 7.653713 AGTTGCGACAAGTAATATGAATAGGAG 59.346 37.037 6.90 0.00 0.00 3.69
301 302 6.455647 TGCGACAAGTAATATGAATAGGAGG 58.544 40.000 0.00 0.00 0.00 4.30
302 303 5.869888 GCGACAAGTAATATGAATAGGAGGG 59.130 44.000 0.00 0.00 0.00 4.30
303 304 6.295123 GCGACAAGTAATATGAATAGGAGGGA 60.295 42.308 0.00 0.00 0.00 4.20
304 305 7.316640 CGACAAGTAATATGAATAGGAGGGAG 58.683 42.308 0.00 0.00 0.00 4.30
305 306 7.039644 CGACAAGTAATATGAATAGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
306 307 9.310449 GACAAGTAATATGAATAGGAGGGAGTA 57.690 37.037 0.00 0.00 0.00 2.59
307 308 9.845214 ACAAGTAATATGAATAGGAGGGAGTAT 57.155 33.333 0.00 0.00 0.00 2.12
316 317 8.150827 TGAATAGGAGGGAGTATCATATTTGG 57.849 38.462 0.00 0.00 34.70 3.28
317 318 7.739444 TGAATAGGAGGGAGTATCATATTTGGT 59.261 37.037 0.00 0.00 34.70 3.67
318 319 8.525729 AATAGGAGGGAGTATCATATTTGGTT 57.474 34.615 0.00 0.00 31.52 3.67
319 320 6.848562 AGGAGGGAGTATCATATTTGGTTT 57.151 37.500 0.00 0.00 36.25 3.27
320 321 7.947782 AGGAGGGAGTATCATATTTGGTTTA 57.052 36.000 0.00 0.00 36.25 2.01
321 322 8.344939 AGGAGGGAGTATCATATTTGGTTTAA 57.655 34.615 0.00 0.00 36.25 1.52
322 323 8.787818 AGGAGGGAGTATCATATTTGGTTTAAA 58.212 33.333 0.00 0.00 36.25 1.52
323 324 9.416284 GGAGGGAGTATCATATTTGGTTTAAAA 57.584 33.333 0.00 0.00 36.25 1.52
355 356 7.447374 CATAATTCATTATGTAAGCGGGGAA 57.553 36.000 10.32 0.00 42.78 3.97
356 357 7.881142 CATAATTCATTATGTAAGCGGGGAAA 58.119 34.615 10.32 0.00 42.78 3.13
357 358 6.783708 AATTCATTATGTAAGCGGGGAAAA 57.216 33.333 0.00 0.00 0.00 2.29
358 359 6.976934 ATTCATTATGTAAGCGGGGAAAAT 57.023 33.333 0.00 0.00 0.00 1.82
359 360 8.472007 AATTCATTATGTAAGCGGGGAAAATA 57.528 30.769 0.00 0.00 0.00 1.40
360 361 8.650143 ATTCATTATGTAAGCGGGGAAAATAT 57.350 30.769 0.00 0.00 0.00 1.28
361 362 7.447374 TCATTATGTAAGCGGGGAAAATATG 57.553 36.000 0.00 0.00 0.00 1.78
362 363 7.227873 TCATTATGTAAGCGGGGAAAATATGA 58.772 34.615 0.00 0.00 0.00 2.15
363 364 7.390440 TCATTATGTAAGCGGGGAAAATATGAG 59.610 37.037 0.00 0.00 0.00 2.90
364 365 3.815809 TGTAAGCGGGGAAAATATGAGG 58.184 45.455 0.00 0.00 0.00 3.86
365 366 3.201266 TGTAAGCGGGGAAAATATGAGGT 59.799 43.478 0.00 0.00 0.00 3.85
366 367 2.348411 AGCGGGGAAAATATGAGGTG 57.652 50.000 0.00 0.00 0.00 4.00
367 368 0.668535 GCGGGGAAAATATGAGGTGC 59.331 55.000 0.00 0.00 0.00 5.01
368 369 2.021723 GCGGGGAAAATATGAGGTGCA 61.022 52.381 0.00 0.00 0.00 4.57
369 370 1.676006 CGGGGAAAATATGAGGTGCAC 59.324 52.381 8.80 8.80 0.00 4.57
370 371 2.683742 CGGGGAAAATATGAGGTGCACT 60.684 50.000 17.98 2.27 0.00 4.40
371 372 2.952310 GGGGAAAATATGAGGTGCACTC 59.048 50.000 17.98 12.55 46.78 3.51
378 379 3.298958 GAGGTGCACTCGGGATCA 58.701 61.111 17.98 0.00 36.29 2.92
379 380 1.826024 GAGGTGCACTCGGGATCAT 59.174 57.895 17.98 0.00 36.29 2.45
380 381 0.531532 GAGGTGCACTCGGGATCATG 60.532 60.000 17.98 0.00 36.29 3.07
381 382 1.221840 GGTGCACTCGGGATCATGT 59.778 57.895 17.98 0.00 0.00 3.21
382 383 0.464036 GGTGCACTCGGGATCATGTA 59.536 55.000 17.98 0.00 0.00 2.29
383 384 1.571919 GTGCACTCGGGATCATGTAC 58.428 55.000 10.32 0.00 0.00 2.90
384 385 1.137086 GTGCACTCGGGATCATGTACT 59.863 52.381 10.32 0.00 0.00 2.73
385 386 1.831106 TGCACTCGGGATCATGTACTT 59.169 47.619 0.00 0.00 0.00 2.24
386 387 2.159099 TGCACTCGGGATCATGTACTTC 60.159 50.000 0.00 0.00 0.00 3.01
387 388 2.101582 GCACTCGGGATCATGTACTTCT 59.898 50.000 0.00 0.00 0.00 2.85
388 389 3.797184 GCACTCGGGATCATGTACTTCTC 60.797 52.174 0.00 0.00 0.00 2.87
389 390 3.634448 CACTCGGGATCATGTACTTCTCT 59.366 47.826 0.00 0.00 0.00 3.10
390 391 4.822350 CACTCGGGATCATGTACTTCTCTA 59.178 45.833 0.00 0.00 0.00 2.43
391 392 5.299531 CACTCGGGATCATGTACTTCTCTAA 59.700 44.000 0.00 0.00 0.00 2.10
392 393 6.015856 CACTCGGGATCATGTACTTCTCTAAT 60.016 42.308 0.00 0.00 0.00 1.73
393 394 6.551601 ACTCGGGATCATGTACTTCTCTAATT 59.448 38.462 0.00 0.00 0.00 1.40
394 395 7.724506 ACTCGGGATCATGTACTTCTCTAATTA 59.275 37.037 0.00 0.00 0.00 1.40
395 396 8.473358 TCGGGATCATGTACTTCTCTAATTAA 57.527 34.615 0.00 0.00 0.00 1.40
396 397 8.920174 TCGGGATCATGTACTTCTCTAATTAAA 58.080 33.333 0.00 0.00 0.00 1.52
397 398 9.712305 CGGGATCATGTACTTCTCTAATTAAAT 57.288 33.333 0.00 0.00 0.00 1.40
427 428 8.803397 TTTTAGGGCCTTCTCTAACTAAATTC 57.197 34.615 13.45 0.00 32.47 2.17
428 429 7.504926 TTAGGGCCTTCTCTAACTAAATTCA 57.495 36.000 13.45 0.00 0.00 2.57
429 430 6.582929 AGGGCCTTCTCTAACTAAATTCAT 57.417 37.500 0.00 0.00 0.00 2.57
430 431 7.691993 AGGGCCTTCTCTAACTAAATTCATA 57.308 36.000 0.00 0.00 0.00 2.15
431 432 7.510407 AGGGCCTTCTCTAACTAAATTCATAC 58.490 38.462 0.00 0.00 0.00 2.39
432 433 7.127339 AGGGCCTTCTCTAACTAAATTCATACA 59.873 37.037 0.00 0.00 0.00 2.29
433 434 7.939588 GGGCCTTCTCTAACTAAATTCATACAT 59.060 37.037 0.84 0.00 0.00 2.29
434 435 9.343539 GGCCTTCTCTAACTAAATTCATACATT 57.656 33.333 0.00 0.00 0.00 2.71
452 453 9.665719 TCATACATTATAAAAGTCTCAACTGCA 57.334 29.630 0.00 0.00 35.36 4.41
456 457 9.630098 ACATTATAAAAGTCTCAACTGCAAATG 57.370 29.630 0.00 0.00 35.36 2.32
457 458 9.844790 CATTATAAAAGTCTCAACTGCAAATGA 57.155 29.630 1.57 1.57 35.36 2.57
458 459 9.846248 ATTATAAAAGTCTCAACTGCAAATGAC 57.154 29.630 0.00 0.00 35.36 3.06
459 460 5.841957 AAAAGTCTCAACTGCAAATGACT 57.158 34.783 0.00 0.00 35.36 3.41
460 461 5.429957 AAAGTCTCAACTGCAAATGACTC 57.570 39.130 7.59 1.22 35.36 3.36
461 462 4.077300 AGTCTCAACTGCAAATGACTCA 57.923 40.909 0.00 0.00 33.32 3.41
462 463 4.454678 AGTCTCAACTGCAAATGACTCAA 58.545 39.130 0.00 0.00 33.32 3.02
463 464 4.514441 AGTCTCAACTGCAAATGACTCAAG 59.486 41.667 0.00 0.00 33.32 3.02
464 465 4.274459 GTCTCAACTGCAAATGACTCAAGT 59.726 41.667 0.00 0.00 0.00 3.16
465 466 5.466728 GTCTCAACTGCAAATGACTCAAGTA 59.533 40.000 0.00 0.00 0.00 2.24
466 467 6.148480 GTCTCAACTGCAAATGACTCAAGTAT 59.852 38.462 0.00 0.00 0.00 2.12
467 468 6.148315 TCTCAACTGCAAATGACTCAAGTATG 59.852 38.462 0.00 0.00 0.00 2.39
468 469 5.764686 TCAACTGCAAATGACTCAAGTATGT 59.235 36.000 0.00 0.00 0.00 2.29
469 470 6.262944 TCAACTGCAAATGACTCAAGTATGTT 59.737 34.615 0.00 0.00 0.00 2.71
470 471 6.639632 ACTGCAAATGACTCAAGTATGTTT 57.360 33.333 0.00 0.00 0.00 2.83
471 472 7.042797 ACTGCAAATGACTCAAGTATGTTTT 57.957 32.000 0.00 0.00 0.00 2.43
472 473 7.141363 ACTGCAAATGACTCAAGTATGTTTTC 58.859 34.615 0.00 0.00 0.00 2.29
473 474 7.036996 TGCAAATGACTCAAGTATGTTTTCA 57.963 32.000 0.00 0.00 0.00 2.69
474 475 7.140705 TGCAAATGACTCAAGTATGTTTTCAG 58.859 34.615 0.00 0.00 0.00 3.02
475 476 7.013178 TGCAAATGACTCAAGTATGTTTTCAGA 59.987 33.333 0.00 0.00 0.00 3.27
476 477 8.025445 GCAAATGACTCAAGTATGTTTTCAGAT 58.975 33.333 0.00 0.00 0.00 2.90
477 478 9.903682 CAAATGACTCAAGTATGTTTTCAGATT 57.096 29.630 0.00 0.00 0.00 2.40
542 543 1.281867 TCATCATCGTGGGCCTTTTCT 59.718 47.619 4.53 0.00 0.00 2.52
545 546 1.032114 CATCGTGGGCCTTTTCTCCC 61.032 60.000 4.53 0.00 42.93 4.30
560 561 1.133041 TCTCCCATCCGAGACCATCAT 60.133 52.381 0.00 0.00 33.91 2.45
567 568 1.405463 TCCGAGACCATCATTCAGTCG 59.595 52.381 0.00 0.00 35.65 4.18
568 569 1.405463 CCGAGACCATCATTCAGTCGA 59.595 52.381 0.00 0.00 35.65 4.20
569 570 2.542618 CCGAGACCATCATTCAGTCGAG 60.543 54.545 0.00 0.00 35.65 4.04
570 571 2.098280 CGAGACCATCATTCAGTCGAGT 59.902 50.000 0.00 0.00 35.65 4.18
572 573 2.428890 AGACCATCATTCAGTCGAGTCC 59.571 50.000 0.00 0.00 35.65 3.85
574 575 1.536922 CCATCATTCAGTCGAGTCCCG 60.537 57.143 0.00 0.00 40.25 5.14
575 576 1.135139 CATCATTCAGTCGAGTCCCGT 59.865 52.381 0.00 0.00 39.75 5.28
576 577 0.526211 TCATTCAGTCGAGTCCCGTG 59.474 55.000 0.00 0.00 39.75 4.94
578 579 2.227089 ATTCAGTCGAGTCCCGTGCC 62.227 60.000 0.00 0.00 39.75 5.01
662 676 1.006102 CTACCTATTCCAGCCGCCG 60.006 63.158 0.00 0.00 0.00 6.46
761 783 1.739067 GCGTGCCCTACAAATCTCTT 58.261 50.000 0.00 0.00 0.00 2.85
768 790 3.950395 GCCCTACAAATCTCTTTGCATCT 59.050 43.478 0.00 0.00 44.63 2.90
769 791 5.126067 GCCCTACAAATCTCTTTGCATCTA 58.874 41.667 0.00 0.00 44.63 1.98
770 792 5.767168 GCCCTACAAATCTCTTTGCATCTAT 59.233 40.000 0.00 0.00 44.63 1.98
771 793 6.072783 GCCCTACAAATCTCTTTGCATCTATC 60.073 42.308 0.00 0.00 44.63 2.08
1056 1111 2.180204 CCGCATTTCTACTGGGGCG 61.180 63.158 0.00 0.00 39.49 6.13
1057 1112 1.449601 CGCATTTCTACTGGGGCGT 60.450 57.895 0.00 0.00 39.65 5.68
1059 1114 1.376609 GCATTTCTACTGGGGCGTGG 61.377 60.000 0.00 0.00 0.00 4.94
1115 1170 0.960861 GAGTACACTTTGCTGCCCCC 60.961 60.000 0.00 0.00 0.00 5.40
1182 1247 4.415332 GGCGCGTCCACTCGAGAA 62.415 66.667 21.68 0.64 32.84 2.87
1191 1256 4.421058 CGTCCACTCGAGAATTTCATGTA 58.579 43.478 21.68 0.00 0.00 2.29
1236 1310 1.001641 CCAGAACTGGGGCTCCAAG 60.002 63.158 6.84 3.28 46.81 3.61
1334 1414 0.874390 GATGTCGGCTTGTGCTTTGA 59.126 50.000 0.00 0.00 39.59 2.69
1351 1431 3.795688 TTGATCAGCCTGGAGTTTTCT 57.204 42.857 0.00 0.00 0.00 2.52
1356 1436 4.640771 TCAGCCTGGAGTTTTCTGTAAT 57.359 40.909 0.00 0.00 0.00 1.89
1415 1521 1.678101 GATAGTTGATGCACAAGGGGC 59.322 52.381 0.00 0.00 39.30 5.80
1449 5496 2.528743 CCTGCTGCCAATACTCGCG 61.529 63.158 0.00 0.00 0.00 5.87
1555 5605 8.547069 GCTCAAACAGATCTTTGACTATATCAC 58.453 37.037 5.85 0.00 36.92 3.06
1596 5649 5.041191 AGATTCATAACTGGGATGTGTCC 57.959 43.478 0.00 0.00 44.29 4.02
1675 5746 6.959639 ATGCAGTTCCAAAGAAGAAGTTTA 57.040 33.333 0.00 0.00 30.91 2.01
1817 5897 5.862678 TCATGACTACCGGACATTTATGA 57.137 39.130 9.46 8.16 0.00 2.15
1918 6004 4.464008 TGTTCTGCTGATTGAAGAAAGGT 58.536 39.130 0.00 0.00 41.72 3.50
1979 6075 7.310664 TGAAATCTTCACAGAGATTCAAATGC 58.689 34.615 1.05 0.00 43.66 3.56
2064 6172 8.766000 TTTCATTTCTAGTATTTGTGTCGCTA 57.234 30.769 0.00 0.00 0.00 4.26
2139 6254 2.502130 TGATGGGCAACAAGTACGGATA 59.498 45.455 0.00 0.00 39.74 2.59
2163 6278 4.632327 TGAGACATTTCCATGTGTACCA 57.368 40.909 0.00 0.00 44.22 3.25
2243 6358 5.751028 GGTATGAGCTGTAGAATGTTCTGTC 59.249 44.000 5.55 0.39 38.19 3.51
2284 6420 2.936919 TGAGGCAGTGTGTTCTGATT 57.063 45.000 0.00 0.00 37.61 2.57
2330 6478 3.485394 TGAGTGGCTATGCAAAAGTTGA 58.515 40.909 0.00 0.00 0.00 3.18
2397 6919 5.105595 GCATTGCTAAGATTTTCTGGGTCTT 60.106 40.000 0.16 0.00 36.30 3.01
2587 7114 8.017418 AGGATTAAAATTGAAACTGTGGTTGA 57.983 30.769 0.00 0.00 35.63 3.18
2613 7140 8.958119 ATTATCTAGTTTAATTTCTGGCGTCA 57.042 30.769 0.00 0.00 0.00 4.35
2614 7141 8.958119 TTATCTAGTTTAATTTCTGGCGTCAT 57.042 30.769 0.00 0.00 0.00 3.06
2657 7184 7.824779 GTGAACCATCTATTTAACTCTGTTCCT 59.175 37.037 0.00 0.00 31.08 3.36
2728 7255 9.555727 TTTTACTTGTCAACAGCTAGAAAGTAT 57.444 29.630 0.00 0.00 30.99 2.12
2756 7283 9.766277 GATAAGAAAGTTTACTGAAGCAATCTG 57.234 33.333 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.271816 CATCGACGAGCCCTCCGG 62.272 72.222 3.01 0.00 0.00 5.14
1 2 2.465097 GATCATCGACGAGCCCTCCG 62.465 65.000 3.01 0.00 0.00 4.63
3 4 0.385751 TTGATCATCGACGAGCCCTC 59.614 55.000 3.01 0.00 0.00 4.30
4 5 1.043816 ATTGATCATCGACGAGCCCT 58.956 50.000 3.01 0.00 0.00 5.19
5 6 1.143305 CATTGATCATCGACGAGCCC 58.857 55.000 3.01 0.00 0.00 5.19
6 7 1.524355 CACATTGATCATCGACGAGCC 59.476 52.381 3.01 0.00 0.00 4.70
7 8 1.524355 CCACATTGATCATCGACGAGC 59.476 52.381 3.01 0.00 0.00 5.03
8 9 3.084070 TCCACATTGATCATCGACGAG 57.916 47.619 3.01 0.00 0.00 4.18
9 10 3.383761 CATCCACATTGATCATCGACGA 58.616 45.455 0.00 0.00 0.00 4.20
10 11 2.096565 GCATCCACATTGATCATCGACG 60.097 50.000 0.00 0.00 0.00 5.12
11 12 3.059120 CAGCATCCACATTGATCATCGAC 60.059 47.826 0.00 0.00 0.00 4.20
12 13 3.135994 CAGCATCCACATTGATCATCGA 58.864 45.455 0.00 0.00 0.00 3.59
13 14 2.876550 ACAGCATCCACATTGATCATCG 59.123 45.455 0.00 0.00 0.00 3.84
14 15 3.881089 TCACAGCATCCACATTGATCATC 59.119 43.478 0.00 0.00 0.00 2.92
15 16 3.893521 TCACAGCATCCACATTGATCAT 58.106 40.909 0.00 0.00 0.00 2.45
16 17 3.353370 TCACAGCATCCACATTGATCA 57.647 42.857 0.00 0.00 0.00 2.92
17 18 4.913335 AATCACAGCATCCACATTGATC 57.087 40.909 0.00 0.00 0.00 2.92
18 19 5.670792 AAAATCACAGCATCCACATTGAT 57.329 34.783 0.00 0.00 0.00 2.57
19 20 5.471556 AAAAATCACAGCATCCACATTGA 57.528 34.783 0.00 0.00 0.00 2.57
58 59 9.889128 AAACAGGATTCTGAAAAATCTCAAAAA 57.111 25.926 8.39 0.00 43.49 1.94
59 60 9.533253 GAAACAGGATTCTGAAAAATCTCAAAA 57.467 29.630 8.39 0.00 43.49 2.44
60 61 8.694540 TGAAACAGGATTCTGAAAAATCTCAAA 58.305 29.630 8.39 0.00 43.49 2.69
61 62 8.236585 TGAAACAGGATTCTGAAAAATCTCAA 57.763 30.769 8.39 0.00 43.49 3.02
62 63 7.822161 TGAAACAGGATTCTGAAAAATCTCA 57.178 32.000 8.39 0.00 43.49 3.27
63 64 9.780413 GTATGAAACAGGATTCTGAAAAATCTC 57.220 33.333 8.39 0.00 43.49 2.75
64 65 9.525826 AGTATGAAACAGGATTCTGAAAAATCT 57.474 29.630 8.39 0.00 43.49 2.40
67 68 9.793259 ACTAGTATGAAACAGGATTCTGAAAAA 57.207 29.630 8.39 0.00 43.49 1.94
69 70 9.871238 GTACTAGTATGAAACAGGATTCTGAAA 57.129 33.333 8.39 0.00 43.49 2.69
70 71 8.475639 GGTACTAGTATGAAACAGGATTCTGAA 58.524 37.037 8.39 0.00 43.49 3.02
71 72 7.839705 AGGTACTAGTATGAAACAGGATTCTGA 59.160 37.037 8.39 0.00 39.52 3.27
72 73 8.012957 AGGTACTAGTATGAAACAGGATTCTG 57.987 38.462 5.75 0.00 41.94 3.02
90 91 4.502950 GCTAGAACGAGAGGCTAGGTACTA 60.503 50.000 0.00 0.00 41.75 1.82
91 92 3.745163 GCTAGAACGAGAGGCTAGGTACT 60.745 52.174 0.00 0.00 46.37 2.73
92 93 2.549329 GCTAGAACGAGAGGCTAGGTAC 59.451 54.545 0.00 0.00 39.26 3.34
93 94 2.172082 TGCTAGAACGAGAGGCTAGGTA 59.828 50.000 0.00 0.00 39.26 3.08
94 95 1.064611 TGCTAGAACGAGAGGCTAGGT 60.065 52.381 0.00 0.00 39.26 3.08
95 96 1.681538 TGCTAGAACGAGAGGCTAGG 58.318 55.000 0.00 0.00 39.26 3.02
96 97 2.542824 GCTTGCTAGAACGAGAGGCTAG 60.543 54.545 0.00 0.00 40.75 3.42
97 98 1.405821 GCTTGCTAGAACGAGAGGCTA 59.594 52.381 0.00 0.00 0.00 3.93
98 99 0.174617 GCTTGCTAGAACGAGAGGCT 59.825 55.000 0.00 0.00 0.00 4.58
99 100 0.108615 TGCTTGCTAGAACGAGAGGC 60.109 55.000 0.00 0.00 0.00 4.70
100 101 1.919918 CTGCTTGCTAGAACGAGAGG 58.080 55.000 0.00 0.00 0.00 3.69
101 102 1.276415 GCTGCTTGCTAGAACGAGAG 58.724 55.000 0.00 0.00 38.95 3.20
102 103 0.108615 GGCTGCTTGCTAGAACGAGA 60.109 55.000 0.00 0.00 42.39 4.04
103 104 0.108424 AGGCTGCTTGCTAGAACGAG 60.108 55.000 0.00 0.00 42.39 4.18
104 105 0.108615 GAGGCTGCTTGCTAGAACGA 60.109 55.000 0.00 0.00 42.39 3.85
105 106 1.086634 GGAGGCTGCTTGCTAGAACG 61.087 60.000 0.00 0.00 42.39 3.95
106 107 0.251634 AGGAGGCTGCTTGCTAGAAC 59.748 55.000 1.28 0.00 42.39 3.01
107 108 0.251354 CAGGAGGCTGCTTGCTAGAA 59.749 55.000 5.51 0.00 42.39 2.10
108 109 0.906756 ACAGGAGGCTGCTTGCTAGA 60.907 55.000 5.51 0.00 42.39 2.43
109 110 0.743701 CACAGGAGGCTGCTTGCTAG 60.744 60.000 5.51 3.64 42.39 3.42
110 111 1.194121 TCACAGGAGGCTGCTTGCTA 61.194 55.000 5.51 0.00 42.39 3.49
111 112 2.033757 CACAGGAGGCTGCTTGCT 59.966 61.111 5.51 0.00 42.39 3.91
112 113 2.033141 TCACAGGAGGCTGCTTGC 59.967 61.111 5.51 0.00 41.94 4.01
113 114 2.039405 GCTCACAGGAGGCTGCTTG 61.039 63.158 5.51 8.70 41.67 4.01
114 115 2.350514 GCTCACAGGAGGCTGCTT 59.649 61.111 5.51 0.00 41.67 3.91
115 116 2.926779 TGCTCACAGGAGGCTGCT 60.927 61.111 1.28 1.28 41.67 4.24
116 117 2.745492 GTGCTCACAGGAGGCTGC 60.745 66.667 0.00 0.00 41.67 5.25
117 118 2.433838 CGTGCTCACAGGAGGCTG 60.434 66.667 0.00 0.00 41.67 4.85
118 119 1.548357 ATTCGTGCTCACAGGAGGCT 61.548 55.000 0.00 0.00 41.40 4.58
119 120 1.078848 ATTCGTGCTCACAGGAGGC 60.079 57.895 0.69 0.00 41.40 4.70
120 121 0.247460 TGATTCGTGCTCACAGGAGG 59.753 55.000 0.69 0.00 41.40 4.30
121 122 1.638133 CTGATTCGTGCTCACAGGAG 58.362 55.000 0.69 0.00 41.40 3.69
122 123 0.390340 GCTGATTCGTGCTCACAGGA 60.390 55.000 0.69 0.00 38.86 3.86
123 124 0.390866 AGCTGATTCGTGCTCACAGG 60.391 55.000 0.69 0.00 33.90 4.00
124 125 3.134401 AGCTGATTCGTGCTCACAG 57.866 52.632 0.69 0.00 33.90 3.66
129 130 1.153745 GACGGAGCTGATTCGTGCT 60.154 57.895 2.99 4.04 42.82 4.40
130 131 1.142778 GAGACGGAGCTGATTCGTGC 61.143 60.000 2.99 0.00 37.25 5.34
131 132 0.453793 AGAGACGGAGCTGATTCGTG 59.546 55.000 2.99 0.00 37.25 4.35
132 133 1.944024 CTAGAGACGGAGCTGATTCGT 59.056 52.381 0.00 0.00 39.99 3.85
133 134 1.944024 ACTAGAGACGGAGCTGATTCG 59.056 52.381 0.00 0.00 0.00 3.34
134 135 4.379339 AAACTAGAGACGGAGCTGATTC 57.621 45.455 0.00 0.00 0.00 2.52
135 136 4.382147 GGAAAACTAGAGACGGAGCTGATT 60.382 45.833 0.00 0.00 0.00 2.57
136 137 3.131400 GGAAAACTAGAGACGGAGCTGAT 59.869 47.826 0.00 0.00 0.00 2.90
137 138 2.492484 GGAAAACTAGAGACGGAGCTGA 59.508 50.000 0.00 0.00 0.00 4.26
138 139 2.732597 CGGAAAACTAGAGACGGAGCTG 60.733 54.545 0.00 0.00 0.00 4.24
139 140 1.473278 CGGAAAACTAGAGACGGAGCT 59.527 52.381 0.00 0.00 0.00 4.09
140 141 1.910688 CGGAAAACTAGAGACGGAGC 58.089 55.000 0.00 0.00 0.00 4.70
141 142 1.469423 GGCGGAAAACTAGAGACGGAG 60.469 57.143 0.00 0.00 0.00 4.63
142 143 0.529378 GGCGGAAAACTAGAGACGGA 59.471 55.000 0.00 0.00 0.00 4.69
143 144 0.801067 CGGCGGAAAACTAGAGACGG 60.801 60.000 0.00 0.00 0.00 4.79
144 145 0.169672 TCGGCGGAAAACTAGAGACG 59.830 55.000 7.21 0.00 0.00 4.18
145 146 2.260481 CTTCGGCGGAAAACTAGAGAC 58.740 52.381 7.21 0.00 0.00 3.36
146 147 1.403780 GCTTCGGCGGAAAACTAGAGA 60.404 52.381 7.21 0.00 0.00 3.10
147 148 1.000145 GCTTCGGCGGAAAACTAGAG 59.000 55.000 7.21 0.00 0.00 2.43
148 149 0.390735 GGCTTCGGCGGAAAACTAGA 60.391 55.000 7.21 0.00 42.91 2.43
149 150 0.391263 AGGCTTCGGCGGAAAACTAG 60.391 55.000 7.21 0.00 42.91 2.57
150 151 0.896923 TAGGCTTCGGCGGAAAACTA 59.103 50.000 7.21 9.91 42.91 2.24
151 152 0.391263 CTAGGCTTCGGCGGAAAACT 60.391 55.000 7.21 10.79 42.91 2.66
152 153 0.672711 ACTAGGCTTCGGCGGAAAAC 60.673 55.000 7.21 4.14 42.91 2.43
153 154 0.390735 GACTAGGCTTCGGCGGAAAA 60.391 55.000 7.21 0.00 42.91 2.29
154 155 1.217244 GACTAGGCTTCGGCGGAAA 59.783 57.895 7.21 0.00 42.91 3.13
155 156 2.718073 GGACTAGGCTTCGGCGGAA 61.718 63.158 7.21 6.53 42.91 4.30
156 157 3.145551 GGACTAGGCTTCGGCGGA 61.146 66.667 7.21 0.00 42.91 5.54
157 158 2.515996 TTTGGACTAGGCTTCGGCGG 62.516 60.000 7.21 0.00 42.91 6.13
158 159 0.672401 TTTTGGACTAGGCTTCGGCG 60.672 55.000 0.00 0.00 42.91 6.46
159 160 1.671328 GATTTTGGACTAGGCTTCGGC 59.329 52.381 0.00 0.00 40.88 5.54
160 161 2.985896 TGATTTTGGACTAGGCTTCGG 58.014 47.619 0.00 0.00 0.00 4.30
161 162 3.313526 CCATGATTTTGGACTAGGCTTCG 59.686 47.826 0.00 0.00 39.25 3.79
162 163 4.526970 TCCATGATTTTGGACTAGGCTTC 58.473 43.478 0.00 0.00 40.90 3.86
163 164 4.591321 TCCATGATTTTGGACTAGGCTT 57.409 40.909 0.00 0.00 40.90 4.35
164 165 4.591321 TTCCATGATTTTGGACTAGGCT 57.409 40.909 0.00 0.00 45.42 4.58
165 166 5.659440 TTTTCCATGATTTTGGACTAGGC 57.341 39.130 0.00 0.00 45.42 3.93
166 167 6.576185 CCATTTTCCATGATTTTGGACTAGG 58.424 40.000 0.00 0.00 45.42 3.02
167 168 6.044682 GCCATTTTCCATGATTTTGGACTAG 58.955 40.000 0.00 0.00 45.42 2.57
168 169 5.721000 AGCCATTTTCCATGATTTTGGACTA 59.279 36.000 0.00 0.00 45.42 2.59
169 170 4.533311 AGCCATTTTCCATGATTTTGGACT 59.467 37.500 0.00 0.00 45.42 3.85
170 171 4.632688 CAGCCATTTTCCATGATTTTGGAC 59.367 41.667 0.00 0.00 45.42 4.02
171 172 4.323638 CCAGCCATTTTCCATGATTTTGGA 60.324 41.667 0.00 0.00 44.08 3.53
172 173 3.942748 CCAGCCATTTTCCATGATTTTGG 59.057 43.478 0.00 0.00 38.18 3.28
173 174 4.834534 TCCAGCCATTTTCCATGATTTTG 58.165 39.130 0.00 0.00 0.00 2.44
174 175 5.502089 TTCCAGCCATTTTCCATGATTTT 57.498 34.783 0.00 0.00 0.00 1.82
175 176 5.502089 TTTCCAGCCATTTTCCATGATTT 57.498 34.783 0.00 0.00 0.00 2.17
176 177 5.502089 TTTTCCAGCCATTTTCCATGATT 57.498 34.783 0.00 0.00 0.00 2.57
177 178 5.502089 TTTTTCCAGCCATTTTCCATGAT 57.498 34.783 0.00 0.00 0.00 2.45
178 179 4.970860 TTTTTCCAGCCATTTTCCATGA 57.029 36.364 0.00 0.00 0.00 3.07
196 197 4.280174 TCGAGGTGAGTACTGCTACTTTTT 59.720 41.667 0.00 0.00 32.96 1.94
197 198 3.825014 TCGAGGTGAGTACTGCTACTTTT 59.175 43.478 0.00 0.00 32.96 2.27
198 199 3.418995 TCGAGGTGAGTACTGCTACTTT 58.581 45.455 0.00 0.00 32.96 2.66
199 200 3.069079 TCGAGGTGAGTACTGCTACTT 57.931 47.619 0.00 0.00 32.96 2.24
200 201 2.783609 TCGAGGTGAGTACTGCTACT 57.216 50.000 0.00 0.00 35.77 2.57
201 202 2.291190 GGATCGAGGTGAGTACTGCTAC 59.709 54.545 0.00 0.00 0.00 3.58
202 203 2.092592 TGGATCGAGGTGAGTACTGCTA 60.093 50.000 0.00 0.00 0.00 3.49
203 204 1.341089 TGGATCGAGGTGAGTACTGCT 60.341 52.381 0.00 0.00 0.00 4.24
204 205 1.103803 TGGATCGAGGTGAGTACTGC 58.896 55.000 0.00 0.00 0.00 4.40
205 206 4.023622 CAGTATGGATCGAGGTGAGTACTG 60.024 50.000 0.00 9.52 34.04 2.74
206 207 4.138290 CAGTATGGATCGAGGTGAGTACT 58.862 47.826 0.00 0.00 0.00 2.73
207 208 3.304794 GCAGTATGGATCGAGGTGAGTAC 60.305 52.174 0.00 0.00 35.86 2.73
208 209 2.885266 GCAGTATGGATCGAGGTGAGTA 59.115 50.000 0.00 0.00 35.86 2.59
209 210 1.683917 GCAGTATGGATCGAGGTGAGT 59.316 52.381 0.00 0.00 35.86 3.41
210 211 1.959985 AGCAGTATGGATCGAGGTGAG 59.040 52.381 0.00 0.00 35.86 3.51
211 212 2.073252 AGCAGTATGGATCGAGGTGA 57.927 50.000 0.00 0.00 35.86 4.02
212 213 2.159043 ACAAGCAGTATGGATCGAGGTG 60.159 50.000 0.00 0.00 35.86 4.00
213 214 2.101582 GACAAGCAGTATGGATCGAGGT 59.898 50.000 0.00 0.00 35.86 3.85
214 215 2.748605 GACAAGCAGTATGGATCGAGG 58.251 52.381 0.00 0.00 35.86 4.63
215 216 2.389059 CGACAAGCAGTATGGATCGAG 58.611 52.381 0.00 0.00 35.86 4.04
216 217 1.067060 CCGACAAGCAGTATGGATCGA 59.933 52.381 0.00 0.00 35.86 3.59
217 218 1.067060 TCCGACAAGCAGTATGGATCG 59.933 52.381 0.00 0.00 35.86 3.69
218 219 2.101582 ACTCCGACAAGCAGTATGGATC 59.898 50.000 4.09 0.00 35.14 3.36
219 220 2.111384 ACTCCGACAAGCAGTATGGAT 58.889 47.619 4.09 0.00 35.14 3.41
220 221 1.557099 ACTCCGACAAGCAGTATGGA 58.443 50.000 0.00 0.00 35.86 3.41
221 222 2.386661 AACTCCGACAAGCAGTATGG 57.613 50.000 0.00 0.00 35.86 2.74
222 223 4.929808 ACTAAAACTCCGACAAGCAGTATG 59.070 41.667 0.00 0.00 40.87 2.39
223 224 5.148651 ACTAAAACTCCGACAAGCAGTAT 57.851 39.130 0.00 0.00 0.00 2.12
224 225 4.595762 ACTAAAACTCCGACAAGCAGTA 57.404 40.909 0.00 0.00 0.00 2.74
225 226 3.470645 ACTAAAACTCCGACAAGCAGT 57.529 42.857 0.00 0.00 0.00 4.40
226 227 4.557205 AGTACTAAAACTCCGACAAGCAG 58.443 43.478 0.00 0.00 0.00 4.24
227 228 4.595762 AGTACTAAAACTCCGACAAGCA 57.404 40.909 0.00 0.00 0.00 3.91
228 229 5.707931 ACTAGTACTAAAACTCCGACAAGC 58.292 41.667 3.76 0.00 0.00 4.01
254 255 8.280497 CGCAACTTGAGTACAACTTTATAGTTT 58.720 33.333 0.00 0.00 41.85 2.66
255 256 7.654520 TCGCAACTTGAGTACAACTTTATAGTT 59.345 33.333 0.00 0.00 45.40 2.24
256 257 7.115947 GTCGCAACTTGAGTACAACTTTATAGT 59.884 37.037 0.00 0.00 35.68 2.12
257 258 7.115805 TGTCGCAACTTGAGTACAACTTTATAG 59.884 37.037 0.00 0.00 32.27 1.31
258 259 6.924612 TGTCGCAACTTGAGTACAACTTTATA 59.075 34.615 0.00 0.00 32.27 0.98
259 260 5.756347 TGTCGCAACTTGAGTACAACTTTAT 59.244 36.000 0.00 0.00 32.27 1.40
260 261 5.110598 TGTCGCAACTTGAGTACAACTTTA 58.889 37.500 0.00 0.00 32.27 1.85
261 262 3.936453 TGTCGCAACTTGAGTACAACTTT 59.064 39.130 0.00 0.00 32.27 2.66
262 263 3.527533 TGTCGCAACTTGAGTACAACTT 58.472 40.909 0.00 0.00 32.27 2.66
263 264 3.173668 TGTCGCAACTTGAGTACAACT 57.826 42.857 0.00 0.00 32.27 3.16
264 265 3.308866 ACTTGTCGCAACTTGAGTACAAC 59.691 43.478 0.00 0.00 32.27 3.32
265 266 3.527533 ACTTGTCGCAACTTGAGTACAA 58.472 40.909 0.00 2.55 34.65 2.41
266 267 3.173668 ACTTGTCGCAACTTGAGTACA 57.826 42.857 0.00 0.00 0.00 2.90
267 268 5.840940 ATTACTTGTCGCAACTTGAGTAC 57.159 39.130 0.00 0.00 0.00 2.73
268 269 7.317390 TCATATTACTTGTCGCAACTTGAGTA 58.683 34.615 0.00 0.00 0.00 2.59
269 270 6.163476 TCATATTACTTGTCGCAACTTGAGT 58.837 36.000 0.00 0.00 0.00 3.41
270 271 6.647212 TCATATTACTTGTCGCAACTTGAG 57.353 37.500 0.00 0.00 0.00 3.02
271 272 7.609760 ATTCATATTACTTGTCGCAACTTGA 57.390 32.000 0.00 0.00 0.00 3.02
272 273 8.064222 CCTATTCATATTACTTGTCGCAACTTG 58.936 37.037 0.00 0.00 0.00 3.16
273 274 7.985184 TCCTATTCATATTACTTGTCGCAACTT 59.015 33.333 0.00 0.00 0.00 2.66
274 275 7.497595 TCCTATTCATATTACTTGTCGCAACT 58.502 34.615 0.00 0.00 0.00 3.16
275 276 7.095607 CCTCCTATTCATATTACTTGTCGCAAC 60.096 40.741 0.00 0.00 0.00 4.17
276 277 6.929049 CCTCCTATTCATATTACTTGTCGCAA 59.071 38.462 0.00 0.00 0.00 4.85
277 278 6.455647 CCTCCTATTCATATTACTTGTCGCA 58.544 40.000 0.00 0.00 0.00 5.10
278 279 5.869888 CCCTCCTATTCATATTACTTGTCGC 59.130 44.000 0.00 0.00 0.00 5.19
279 280 7.039644 ACTCCCTCCTATTCATATTACTTGTCG 60.040 40.741 0.00 0.00 0.00 4.35
280 281 8.196378 ACTCCCTCCTATTCATATTACTTGTC 57.804 38.462 0.00 0.00 0.00 3.18
281 282 9.845214 ATACTCCCTCCTATTCATATTACTTGT 57.155 33.333 0.00 0.00 0.00 3.16
290 291 8.776119 CCAAATATGATACTCCCTCCTATTCAT 58.224 37.037 0.00 0.00 0.00 2.57
291 292 7.739444 ACCAAATATGATACTCCCTCCTATTCA 59.261 37.037 0.00 0.00 0.00 2.57
292 293 8.152023 ACCAAATATGATACTCCCTCCTATTC 57.848 38.462 0.00 0.00 0.00 1.75
293 294 8.525729 AACCAAATATGATACTCCCTCCTATT 57.474 34.615 0.00 0.00 0.00 1.73
294 295 8.525729 AAACCAAATATGATACTCCCTCCTAT 57.474 34.615 0.00 0.00 0.00 2.57
295 296 7.947782 AAACCAAATATGATACTCCCTCCTA 57.052 36.000 0.00 0.00 0.00 2.94
296 297 6.848562 AAACCAAATATGATACTCCCTCCT 57.151 37.500 0.00 0.00 0.00 3.69
297 298 8.990163 TTTAAACCAAATATGATACTCCCTCC 57.010 34.615 0.00 0.00 0.00 4.30
332 333 8.472007 TTTTCCCCGCTTACATAATGAATTAT 57.528 30.769 0.00 0.00 33.44 1.28
333 334 7.883391 TTTTCCCCGCTTACATAATGAATTA 57.117 32.000 0.00 0.00 0.00 1.40
334 335 6.783708 TTTTCCCCGCTTACATAATGAATT 57.216 33.333 0.00 0.00 0.00 2.17
335 336 6.976934 ATTTTCCCCGCTTACATAATGAAT 57.023 33.333 0.00 0.00 0.00 2.57
336 337 7.721842 TCATATTTTCCCCGCTTACATAATGAA 59.278 33.333 0.00 0.00 0.00 2.57
337 338 7.227873 TCATATTTTCCCCGCTTACATAATGA 58.772 34.615 0.00 0.00 0.00 2.57
338 339 7.362056 CCTCATATTTTCCCCGCTTACATAATG 60.362 40.741 0.00 0.00 0.00 1.90
339 340 6.659242 CCTCATATTTTCCCCGCTTACATAAT 59.341 38.462 0.00 0.00 0.00 1.28
340 341 6.001460 CCTCATATTTTCCCCGCTTACATAA 58.999 40.000 0.00 0.00 0.00 1.90
341 342 5.072600 ACCTCATATTTTCCCCGCTTACATA 59.927 40.000 0.00 0.00 0.00 2.29
342 343 4.141251 ACCTCATATTTTCCCCGCTTACAT 60.141 41.667 0.00 0.00 0.00 2.29
343 344 3.201266 ACCTCATATTTTCCCCGCTTACA 59.799 43.478 0.00 0.00 0.00 2.41
344 345 3.564225 CACCTCATATTTTCCCCGCTTAC 59.436 47.826 0.00 0.00 0.00 2.34
345 346 3.815809 CACCTCATATTTTCCCCGCTTA 58.184 45.455 0.00 0.00 0.00 3.09
346 347 2.654863 CACCTCATATTTTCCCCGCTT 58.345 47.619 0.00 0.00 0.00 4.68
347 348 1.750682 GCACCTCATATTTTCCCCGCT 60.751 52.381 0.00 0.00 0.00 5.52
348 349 0.668535 GCACCTCATATTTTCCCCGC 59.331 55.000 0.00 0.00 0.00 6.13
349 350 1.676006 GTGCACCTCATATTTTCCCCG 59.324 52.381 5.22 0.00 0.00 5.73
350 351 2.952310 GAGTGCACCTCATATTTTCCCC 59.048 50.000 14.63 0.00 40.17 4.81
351 352 2.614057 CGAGTGCACCTCATATTTTCCC 59.386 50.000 14.63 0.00 40.48 3.97
352 353 2.614057 CCGAGTGCACCTCATATTTTCC 59.386 50.000 14.63 0.00 40.48 3.13
353 354 2.614057 CCCGAGTGCACCTCATATTTTC 59.386 50.000 14.63 0.00 40.48 2.29
354 355 2.238646 TCCCGAGTGCACCTCATATTTT 59.761 45.455 14.63 0.00 40.48 1.82
355 356 1.837439 TCCCGAGTGCACCTCATATTT 59.163 47.619 14.63 0.00 40.48 1.40
356 357 1.496060 TCCCGAGTGCACCTCATATT 58.504 50.000 14.63 0.00 40.48 1.28
357 358 1.620819 GATCCCGAGTGCACCTCATAT 59.379 52.381 14.63 1.98 40.48 1.78
358 359 1.040646 GATCCCGAGTGCACCTCATA 58.959 55.000 14.63 0.00 40.48 2.15
359 360 0.977627 TGATCCCGAGTGCACCTCAT 60.978 55.000 14.63 0.00 40.48 2.90
360 361 0.977627 ATGATCCCGAGTGCACCTCA 60.978 55.000 14.63 7.66 40.48 3.86
361 362 0.531532 CATGATCCCGAGTGCACCTC 60.532 60.000 14.63 9.60 36.80 3.85
362 363 1.267574 ACATGATCCCGAGTGCACCT 61.268 55.000 14.63 0.04 0.00 4.00
363 364 0.464036 TACATGATCCCGAGTGCACC 59.536 55.000 14.63 4.10 0.00 5.01
364 365 1.137086 AGTACATGATCCCGAGTGCAC 59.863 52.381 9.40 9.40 0.00 4.57
365 366 1.485124 AGTACATGATCCCGAGTGCA 58.515 50.000 0.00 0.00 0.00 4.57
366 367 2.101582 AGAAGTACATGATCCCGAGTGC 59.898 50.000 0.00 0.00 0.00 4.40
367 368 3.634448 AGAGAAGTACATGATCCCGAGTG 59.366 47.826 0.00 0.00 0.00 3.51
368 369 3.904717 AGAGAAGTACATGATCCCGAGT 58.095 45.455 0.00 0.00 0.00 4.18
369 370 6.582677 ATTAGAGAAGTACATGATCCCGAG 57.417 41.667 0.00 0.00 0.00 4.63
370 371 6.978674 AATTAGAGAAGTACATGATCCCGA 57.021 37.500 0.00 0.00 0.00 5.14
371 372 9.712305 ATTTAATTAGAGAAGTACATGATCCCG 57.288 33.333 0.00 0.00 0.00 5.14
401 402 9.239551 GAATTTAGTTAGAGAAGGCCCTAAAAA 57.760 33.333 0.00 0.00 30.75 1.94
402 403 8.387813 TGAATTTAGTTAGAGAAGGCCCTAAAA 58.612 33.333 0.00 0.00 30.75 1.52
403 404 7.924541 TGAATTTAGTTAGAGAAGGCCCTAAA 58.075 34.615 0.00 4.00 0.00 1.85
404 405 7.504926 TGAATTTAGTTAGAGAAGGCCCTAA 57.495 36.000 0.00 0.00 0.00 2.69
405 406 7.691993 ATGAATTTAGTTAGAGAAGGCCCTA 57.308 36.000 0.00 0.00 0.00 3.53
406 407 6.582929 ATGAATTTAGTTAGAGAAGGCCCT 57.417 37.500 0.00 0.00 0.00 5.19
407 408 7.280356 TGTATGAATTTAGTTAGAGAAGGCCC 58.720 38.462 0.00 0.00 0.00 5.80
408 409 8.910351 ATGTATGAATTTAGTTAGAGAAGGCC 57.090 34.615 0.00 0.00 0.00 5.19
426 427 9.665719 TGCAGTTGAGACTTTTATAATGTATGA 57.334 29.630 0.00 0.00 32.54 2.15
430 431 9.630098 CATTTGCAGTTGAGACTTTTATAATGT 57.370 29.630 0.00 0.00 32.54 2.71
431 432 9.844790 TCATTTGCAGTTGAGACTTTTATAATG 57.155 29.630 0.00 0.00 32.54 1.90
432 433 9.846248 GTCATTTGCAGTTGAGACTTTTATAAT 57.154 29.630 1.26 0.00 32.54 1.28
433 434 9.066892 AGTCATTTGCAGTTGAGACTTTTATAA 57.933 29.630 1.26 0.00 32.88 0.98
434 435 8.621532 AGTCATTTGCAGTTGAGACTTTTATA 57.378 30.769 1.26 0.00 32.88 0.98
435 436 7.229306 TGAGTCATTTGCAGTTGAGACTTTTAT 59.771 33.333 9.62 0.00 36.56 1.40
436 437 6.542005 TGAGTCATTTGCAGTTGAGACTTTTA 59.458 34.615 9.62 0.92 36.56 1.52
437 438 5.357878 TGAGTCATTTGCAGTTGAGACTTTT 59.642 36.000 9.62 0.00 36.56 2.27
438 439 4.883585 TGAGTCATTTGCAGTTGAGACTTT 59.116 37.500 9.62 0.00 36.56 2.66
439 440 4.454678 TGAGTCATTTGCAGTTGAGACTT 58.545 39.130 9.62 0.00 36.56 3.01
440 441 4.077300 TGAGTCATTTGCAGTTGAGACT 57.923 40.909 8.47 8.47 38.89 3.24
441 442 4.274459 ACTTGAGTCATTTGCAGTTGAGAC 59.726 41.667 0.00 0.81 0.00 3.36
442 443 4.454678 ACTTGAGTCATTTGCAGTTGAGA 58.545 39.130 0.00 0.00 0.00 3.27
443 444 4.825546 ACTTGAGTCATTTGCAGTTGAG 57.174 40.909 0.00 0.00 0.00 3.02
444 445 5.764686 ACATACTTGAGTCATTTGCAGTTGA 59.235 36.000 0.00 0.00 0.00 3.18
445 446 6.005583 ACATACTTGAGTCATTTGCAGTTG 57.994 37.500 0.00 0.00 0.00 3.16
446 447 6.639632 AACATACTTGAGTCATTTGCAGTT 57.360 33.333 0.00 0.00 0.00 3.16
447 448 6.639632 AAACATACTTGAGTCATTTGCAGT 57.360 33.333 0.00 0.00 0.00 4.40
448 449 7.140705 TGAAAACATACTTGAGTCATTTGCAG 58.859 34.615 0.00 0.00 0.00 4.41
449 450 7.013178 TCTGAAAACATACTTGAGTCATTTGCA 59.987 33.333 0.00 0.00 0.00 4.08
450 451 7.362662 TCTGAAAACATACTTGAGTCATTTGC 58.637 34.615 0.00 0.00 0.00 3.68
451 452 9.903682 AATCTGAAAACATACTTGAGTCATTTG 57.096 29.630 0.00 0.00 0.00 2.32
510 511 2.234661 ACGATGATGAAGCCTCTCACAA 59.765 45.455 0.00 0.00 0.00 3.33
513 514 1.137675 CCACGATGATGAAGCCTCTCA 59.862 52.381 0.00 0.00 0.00 3.27
522 523 1.281867 AGAAAAGGCCCACGATGATGA 59.718 47.619 0.00 0.00 0.00 2.92
523 524 1.672881 GAGAAAAGGCCCACGATGATG 59.327 52.381 0.00 0.00 0.00 3.07
524 525 1.408822 GGAGAAAAGGCCCACGATGAT 60.409 52.381 0.00 0.00 0.00 2.45
542 543 1.694150 GAATGATGGTCTCGGATGGGA 59.306 52.381 0.00 0.00 0.00 4.37
545 546 3.388308 GACTGAATGATGGTCTCGGATG 58.612 50.000 0.00 0.00 0.00 3.51
560 561 2.649034 GCACGGGACTCGACTGAA 59.351 61.111 0.00 0.00 42.43 3.02
582 588 2.570284 GCTTTTGGGGTTGGGGACG 61.570 63.158 0.00 0.00 0.00 4.79
662 676 2.024176 TCTCCATAGCTTGAAACGGC 57.976 50.000 0.00 0.00 0.00 5.68
665 679 3.561725 CCGGATTCTCCATAGCTTGAAAC 59.438 47.826 0.00 0.00 35.91 2.78
768 790 0.740868 GGCAGACGCACTTGCAGATA 60.741 55.000 1.48 0.00 42.21 1.98
769 791 2.037136 GGCAGACGCACTTGCAGAT 61.037 57.895 1.48 0.00 42.21 2.90
770 792 2.666190 GGCAGACGCACTTGCAGA 60.666 61.111 1.48 0.00 42.21 4.26
771 793 3.730761 GGGCAGACGCACTTGCAG 61.731 66.667 1.48 0.00 39.07 4.41
790 812 4.864334 GATGAGGTGGCGCCAGGG 62.864 72.222 33.73 0.00 40.61 4.45
894 937 4.697756 TTGACGCCGGGGAAGCTG 62.698 66.667 27.23 0.00 0.00 4.24
895 938 4.699522 GTTGACGCCGGGGAAGCT 62.700 66.667 27.23 1.36 0.00 3.74
896 939 3.305177 TAGTTGACGCCGGGGAAGC 62.305 63.158 27.23 14.39 0.00 3.86
1056 1111 3.689649 AGACCATGTAGCGAAATTTCCAC 59.310 43.478 12.54 8.57 0.00 4.02
1057 1112 3.938963 GAGACCATGTAGCGAAATTTCCA 59.061 43.478 12.54 5.08 0.00 3.53
1059 1114 3.938963 TGGAGACCATGTAGCGAAATTTC 59.061 43.478 8.20 8.20 0.00 2.17
1132 1190 2.616960 CAGGTAAGCAATGCTGTCGTA 58.383 47.619 9.14 0.00 39.62 3.43
1182 1247 7.758076 TCGTGTAGAAACTCGAATACATGAAAT 59.242 33.333 0.00 0.00 45.57 2.17
1236 1310 1.202698 ACTGCTCTCACAAACAGGGAC 60.203 52.381 0.00 0.00 34.40 4.46
1312 1392 1.291877 AAGCACAAGCCGACATCGAC 61.292 55.000 2.09 0.00 43.56 4.20
1317 1397 0.874390 GATCAAAGCACAAGCCGACA 59.126 50.000 0.00 0.00 43.56 4.35
1334 1414 4.640771 TTACAGAAAACTCCAGGCTGAT 57.359 40.909 17.94 0.00 0.00 2.90
1449 5496 2.881111 AACCTGAGAAACCCTTAGCC 57.119 50.000 0.00 0.00 0.00 3.93
1600 5653 1.608336 ATTCGTCGTCCAGGTGGGA 60.608 57.895 0.00 0.00 45.89 4.37
1601 5654 1.447838 CATTCGTCGTCCAGGTGGG 60.448 63.158 0.00 0.00 35.41 4.61
1783 5860 5.047021 CCGGTAGTCATGATCAAGGTGATAT 60.047 44.000 0.00 0.00 37.20 1.63
1784 5861 4.280929 CCGGTAGTCATGATCAAGGTGATA 59.719 45.833 0.00 0.00 37.20 2.15
1785 5862 3.070159 CCGGTAGTCATGATCAAGGTGAT 59.930 47.826 0.00 0.00 40.34 3.06
1786 5863 2.430694 CCGGTAGTCATGATCAAGGTGA 59.569 50.000 0.00 0.00 0.00 4.02
1817 5897 5.490159 CAGTGGCACATATGGGAAAAATTT 58.510 37.500 21.41 0.00 44.52 1.82
1918 6004 0.252696 AGTACCTCACCCATGGCTGA 60.253 55.000 6.09 8.05 0.00 4.26
1979 6075 5.422666 TTCTACAAACAACACAGCATCTG 57.577 39.130 0.00 0.00 37.52 2.90
2139 6254 6.899089 TGGTACACATGGAAATGTCTCATAT 58.101 36.000 0.00 0.00 31.37 1.78
2243 6358 3.457610 ACTTGTTGCACATCAAAAGGG 57.542 42.857 0.00 0.00 36.26 3.95
2397 6919 9.739276 ATATAACATCAAACCAGAAAGAACAGA 57.261 29.630 0.00 0.00 0.00 3.41
2587 7114 9.391006 TGACGCCAGAAATTAAACTAGATAATT 57.609 29.630 0.00 4.73 35.12 1.40
2613 7140 4.085357 TCACCAACACTGTTGAAGCTAT 57.915 40.909 21.38 0.00 0.00 2.97
2614 7141 3.552132 TCACCAACACTGTTGAAGCTA 57.448 42.857 21.38 1.86 0.00 3.32
2615 7142 2.418368 TCACCAACACTGTTGAAGCT 57.582 45.000 21.38 0.56 0.00 3.74
2657 7184 5.774690 ACTTTCATCCTAAATTGTTGGAGCA 59.225 36.000 0.00 0.00 32.95 4.26
2691 7218 7.184106 TGTTGACAAGTAAAAAGCTTTAGACG 58.816 34.615 13.10 4.74 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.