Multiple sequence alignment - TraesCS7D01G473500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G473500 chr7D 100.000 4375 0 0 1 4375 586502894 586498520 0.000000e+00 8080
1 TraesCS7D01G473500 chr7D 82.578 1963 211 65 836 2710 586700026 586701945 0.000000e+00 1609
2 TraesCS7D01G473500 chr7D 79.673 1530 205 54 1014 2478 586708185 586709673 0.000000e+00 1005
3 TraesCS7D01G473500 chr7D 93.868 636 36 3 4 637 108365529 108364895 0.000000e+00 955
4 TraesCS7D01G473500 chr7D 92.925 636 42 3 4 637 108343860 108343226 0.000000e+00 922
5 TraesCS7D01G473500 chr7D 91.772 632 48 3 1 630 591021370 591021999 0.000000e+00 876
6 TraesCS7D01G473500 chr7D 77.562 1649 234 71 1014 2587 586688735 586690322 0.000000e+00 870
7 TraesCS7D01G473500 chr7D 74.819 1521 241 80 1014 2455 586754350 586755807 1.370000e-154 556
8 TraesCS7D01G473500 chr7D 92.135 178 9 4 2709 2881 454079247 454079424 3.380000e-61 246
9 TraesCS7D01G473500 chr7A 82.775 1881 198 55 634 2421 677824925 677826772 0.000000e+00 1563
10 TraesCS7D01G473500 chr7A 81.468 1662 209 54 889 2485 678146326 678144699 0.000000e+00 1271
11 TraesCS7D01G473500 chr7A 90.647 695 52 10 2866 3554 677721537 677720850 0.000000e+00 911
12 TraesCS7D01G473500 chr7A 92.126 635 41 7 1 630 136175133 136174503 0.000000e+00 887
13 TraesCS7D01G473500 chr7A 78.529 1332 195 46 1014 2278 677833050 677834357 0.000000e+00 791
14 TraesCS7D01G473500 chr7A 85.865 757 74 15 1967 2710 677722736 677722000 0.000000e+00 774
15 TraesCS7D01G473500 chr7A 74.869 1528 245 77 1014 2455 677839001 677840475 2.280000e-157 566
16 TraesCS7D01G473500 chr7A 79.087 789 103 35 1014 1771 677821388 677822145 1.830000e-133 486
17 TraesCS7D01G473500 chr7A 79.708 685 111 19 1014 1684 677723722 677723052 1.840000e-128 470
18 TraesCS7D01G473500 chr7A 77.854 727 117 19 968 1684 677995527 677994835 1.130000e-110 411
19 TraesCS7D01G473500 chr7A 93.727 271 14 3 3559 3828 677720816 677720548 1.890000e-108 403
20 TraesCS7D01G473500 chr7A 80.225 445 57 18 3153 3584 677823667 677824093 5.500000e-79 305
21 TraesCS7D01G473500 chr7A 88.492 252 19 3 3911 4162 677707705 677707464 3.310000e-76 296
22 TraesCS7D01G473500 chr7A 85.866 283 29 4 3465 3745 677827536 677827809 1.540000e-74 291
23 TraesCS7D01G473500 chr7A 82.958 311 36 4 3119 3429 677827247 677827540 9.330000e-67 265
24 TraesCS7D01G473500 chr7A 88.235 204 18 5 2865 3064 677827026 677827227 5.650000e-59 239
25 TraesCS7D01G473500 chr7A 85.965 114 7 6 4262 4375 677707426 677707322 3.580000e-21 113
26 TraesCS7D01G473500 chr7B 81.915 1692 184 48 1014 2637 656529585 656527948 0.000000e+00 1317
27 TraesCS7D01G473500 chr7B 88.219 1078 82 20 634 1684 657084251 657085310 0.000000e+00 1245
28 TraesCS7D01G473500 chr7B 82.295 1525 186 38 1014 2485 657663279 657661786 0.000000e+00 1243
29 TraesCS7D01G473500 chr7B 89.697 990 63 15 2865 3843 656527903 656526942 0.000000e+00 1227
30 TraesCS7D01G473500 chr7B 80.326 1535 216 46 1014 2478 657313575 657315093 0.000000e+00 1083
31 TraesCS7D01G473500 chr7B 79.333 1650 225 51 1014 2578 656928801 656930419 0.000000e+00 1051
32 TraesCS7D01G473500 chr7B 83.969 892 114 18 1833 2710 657085474 657086350 0.000000e+00 828
33 TraesCS7D01G473500 chr7B 86.643 569 58 8 2159 2710 657077116 657077683 8.040000e-172 614
34 TraesCS7D01G473500 chr7B 78.107 845 120 32 936 1772 657420474 657421261 3.960000e-130 475
35 TraesCS7D01G473500 chr7B 85.366 451 28 16 3925 4375 656526066 656525654 2.420000e-117 433
36 TraesCS7D01G473500 chr7B 78.374 689 122 17 1014 1684 656552155 656551476 5.230000e-114 422
37 TraesCS7D01G473500 chr7B 80.392 510 88 6 1014 1511 657338848 657339357 1.150000e-100 377
38 TraesCS7D01G473500 chr7B 89.965 289 26 2 2424 2710 656550857 656550570 1.920000e-98 370
39 TraesCS7D01G473500 chr7B 84.262 305 29 9 2424 2710 731586069 731585766 3.330000e-71 279
40 TraesCS7D01G473500 chr7B 91.765 170 10 3 2699 2864 734071460 734071629 2.630000e-57 233
41 TraesCS7D01G473500 chr7B 92.241 116 8 1 3624 3738 656549101 656548986 3.500000e-36 163
42 TraesCS7D01G473500 chr7B 84.106 151 18 3 1364 1511 657318354 657318501 1.640000e-29 141
43 TraesCS7D01G473500 chr6A 92.068 643 45 5 1 639 29595534 29596174 0.000000e+00 900
44 TraesCS7D01G473500 chr3A 92.151 637 42 6 1 632 629176504 629177137 0.000000e+00 893
45 TraesCS7D01G473500 chr3A 90.839 644 52 4 1 638 373326008 373326650 0.000000e+00 856
46 TraesCS7D01G473500 chr2A 91.796 646 45 6 1 641 642579134 642578492 0.000000e+00 893
47 TraesCS7D01G473500 chr2A 91.908 173 9 3 2698 2867 539328124 539327954 2.030000e-58 237
48 TraesCS7D01G473500 chr1A 91.581 582 43 5 34 610 404480841 404481421 0.000000e+00 798
49 TraesCS7D01G473500 chr1A 91.716 169 10 3 2700 2864 540323896 540324064 9.460000e-57 231
50 TraesCS7D01G473500 chr1A 92.391 92 6 1 2497 2587 55005395 55005304 3.550000e-26 130
51 TraesCS7D01G473500 chr4A 93.976 166 6 3 2706 2867 137967144 137966979 9.400000e-62 248
52 TraesCS7D01G473500 chr4A 94.479 163 5 3 2706 2864 137972665 137972827 9.400000e-62 248
53 TraesCS7D01G473500 chr5D 92.683 164 10 2 2709 2870 528616786 528616623 7.320000e-58 235
54 TraesCS7D01G473500 chr2D 92.308 169 8 4 2703 2868 556926928 556927094 7.320000e-58 235
55 TraesCS7D01G473500 chr1D 91.860 172 7 5 2703 2871 451226905 451226738 2.630000e-57 233


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G473500 chr7D 586498520 586502894 4374 True 8080.000000 8080 100.000000 1 4375 1 chr7D.!!$R3 4374
1 TraesCS7D01G473500 chr7D 586700026 586701945 1919 False 1609.000000 1609 82.578000 836 2710 1 chr7D.!!$F3 1874
2 TraesCS7D01G473500 chr7D 586708185 586709673 1488 False 1005.000000 1005 79.673000 1014 2478 1 chr7D.!!$F4 1464
3 TraesCS7D01G473500 chr7D 108364895 108365529 634 True 955.000000 955 93.868000 4 637 1 chr7D.!!$R2 633
4 TraesCS7D01G473500 chr7D 108343226 108343860 634 True 922.000000 922 92.925000 4 637 1 chr7D.!!$R1 633
5 TraesCS7D01G473500 chr7D 591021370 591021999 629 False 876.000000 876 91.772000 1 630 1 chr7D.!!$F6 629
6 TraesCS7D01G473500 chr7D 586688735 586690322 1587 False 870.000000 870 77.562000 1014 2587 1 chr7D.!!$F2 1573
7 TraesCS7D01G473500 chr7D 586754350 586755807 1457 False 556.000000 556 74.819000 1014 2455 1 chr7D.!!$F5 1441
8 TraesCS7D01G473500 chr7A 678144699 678146326 1627 True 1271.000000 1271 81.468000 889 2485 1 chr7A.!!$R3 1596
9 TraesCS7D01G473500 chr7A 136174503 136175133 630 True 887.000000 887 92.126000 1 630 1 chr7A.!!$R1 629
10 TraesCS7D01G473500 chr7A 677833050 677834357 1307 False 791.000000 791 78.529000 1014 2278 1 chr7A.!!$F1 1264
11 TraesCS7D01G473500 chr7A 677720548 677723722 3174 True 639.500000 911 87.486750 1014 3828 4 chr7A.!!$R5 2814
12 TraesCS7D01G473500 chr7A 677839001 677840475 1474 False 566.000000 566 74.869000 1014 2455 1 chr7A.!!$F2 1441
13 TraesCS7D01G473500 chr7A 677821388 677827809 6421 False 524.833333 1563 83.191000 634 3745 6 chr7A.!!$F3 3111
14 TraesCS7D01G473500 chr7A 677994835 677995527 692 True 411.000000 411 77.854000 968 1684 1 chr7A.!!$R2 716
15 TraesCS7D01G473500 chr7B 657661786 657663279 1493 True 1243.000000 1243 82.295000 1014 2485 1 chr7B.!!$R1 1471
16 TraesCS7D01G473500 chr7B 656928801 656930419 1618 False 1051.000000 1051 79.333000 1014 2578 1 chr7B.!!$F1 1564
17 TraesCS7D01G473500 chr7B 657084251 657086350 2099 False 1036.500000 1245 86.094000 634 2710 2 chr7B.!!$F6 2076
18 TraesCS7D01G473500 chr7B 656525654 656529585 3931 True 992.333333 1317 85.659333 1014 4375 3 chr7B.!!$R3 3361
19 TraesCS7D01G473500 chr7B 657077116 657077683 567 False 614.000000 614 86.643000 2159 2710 1 chr7B.!!$F2 551
20 TraesCS7D01G473500 chr7B 657313575 657318501 4926 False 612.000000 1083 82.216000 1014 2478 2 chr7B.!!$F7 1464
21 TraesCS7D01G473500 chr7B 657420474 657421261 787 False 475.000000 475 78.107000 936 1772 1 chr7B.!!$F4 836
22 TraesCS7D01G473500 chr7B 657338848 657339357 509 False 377.000000 377 80.392000 1014 1511 1 chr7B.!!$F3 497
23 TraesCS7D01G473500 chr7B 656548986 656552155 3169 True 318.333333 422 86.860000 1014 3738 3 chr7B.!!$R4 2724
24 TraesCS7D01G473500 chr6A 29595534 29596174 640 False 900.000000 900 92.068000 1 639 1 chr6A.!!$F1 638
25 TraesCS7D01G473500 chr3A 629176504 629177137 633 False 893.000000 893 92.151000 1 632 1 chr3A.!!$F2 631
26 TraesCS7D01G473500 chr3A 373326008 373326650 642 False 856.000000 856 90.839000 1 638 1 chr3A.!!$F1 637
27 TraesCS7D01G473500 chr2A 642578492 642579134 642 True 893.000000 893 91.796000 1 641 1 chr2A.!!$R2 640
28 TraesCS7D01G473500 chr1A 404480841 404481421 580 False 798.000000 798 91.581000 34 610 1 chr1A.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 3821 0.539051 CCATCACTCACTCCCCACTC 59.461 60.000 0.0 0.0 0.0 3.51 F
1812 4859 0.038166 TTGGGAAGTCTCATGGGCAC 59.962 55.000 0.0 0.0 0.0 5.01 F
1843 4914 1.883926 TCGACTCGGACACATCTTTGA 59.116 47.619 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2603 5911 0.037882 CTCTTGCTTCGCCACTCAGA 60.038 55.000 0.0 0.0 0.0 3.27 R
2749 6532 0.101759 TTGCTCCGTATGTAGTCCGC 59.898 55.000 0.0 0.0 0.0 5.54 R
3444 10149 1.561542 AGTTGGGATCTGGCTAGGTTG 59.438 52.381 0.0 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 4.910195 AGCAGTTAACTGGACATCAATGA 58.090 39.130 31.42 0.00 43.94 2.57
478 487 5.178623 TCGACGCTTCAATCAAAAGTTACAT 59.821 36.000 0.00 0.00 0.00 2.29
483 493 9.522804 ACGCTTCAATCAAAAGTTACATTTTTA 57.477 25.926 0.00 0.00 30.01 1.52
521 532 6.070653 ACACCCAAATAAATGAACATGCAGAT 60.071 34.615 0.00 0.00 0.00 2.90
593 606 2.370281 TTTGAAAGAGCGCTCGATCT 57.630 45.000 31.51 20.00 43.27 2.75
598 611 2.329678 AAGAGCGCTCGATCTCACCG 62.330 60.000 30.39 0.00 40.26 4.94
601 614 4.193334 CGCTCGATCTCACCGGCA 62.193 66.667 0.00 0.00 0.00 5.69
687 3594 5.880054 ATCACAAGCATTTACTGGTACAC 57.120 39.130 0.00 0.00 33.48 2.90
711 3618 3.081804 CCCACTCTAAAATCCACACACC 58.918 50.000 0.00 0.00 0.00 4.16
712 3619 3.497763 CCCACTCTAAAATCCACACACCA 60.498 47.826 0.00 0.00 0.00 4.17
726 3633 4.261741 CCACACACCAGATTTCTTTTGGAG 60.262 45.833 0.00 0.00 35.89 3.86
744 3652 6.768029 TTGGAGAAATTCAAAATTTCAGCG 57.232 33.333 21.03 0.00 39.71 5.18
779 3687 8.552083 AAATTTCTGAAATAAAAGGACCATGC 57.448 30.769 15.45 0.00 0.00 4.06
802 3710 5.220098 GCGCTCTTCATATCAAAGCAAAAAC 60.220 40.000 0.00 0.00 33.21 2.43
803 3711 5.287035 CGCTCTTCATATCAAAGCAAAAACC 59.713 40.000 0.00 0.00 33.21 3.27
804 3712 6.393171 GCTCTTCATATCAAAGCAAAAACCT 58.607 36.000 0.00 0.00 33.21 3.50
806 3714 7.576477 GCTCTTCATATCAAAGCAAAAACCTCT 60.576 37.037 0.00 0.00 33.21 3.69
809 3724 9.912634 CTTCATATCAAAGCAAAAACCTCTAAA 57.087 29.630 0.00 0.00 0.00 1.85
894 3812 2.544685 CAATCCGAGACCATCACTCAC 58.455 52.381 0.00 0.00 34.47 3.51
903 3821 0.539051 CCATCACTCACTCCCCACTC 59.461 60.000 0.00 0.00 0.00 3.51
982 3945 2.100252 TCGAAACCTACCTATTCCAGCG 59.900 50.000 0.00 0.00 0.00 5.18
1077 4043 2.196925 CCTCTCTCGCGTGCCCTAT 61.197 63.158 5.77 0.00 0.00 2.57
1161 4131 4.390297 GTCTACAGGAAGAAGATTGTGCAC 59.610 45.833 10.75 10.75 0.00 4.57
1194 4164 1.179152 TCTTCTACCGCATCACCGAA 58.821 50.000 0.00 0.00 0.00 4.30
1511 4532 3.042887 GGTTTCATGTGTTCGAGTTTGC 58.957 45.455 0.00 0.00 0.00 3.68
1553 4583 0.395036 CACCGGGGCATACAATTCCA 60.395 55.000 6.32 0.00 0.00 3.53
1668 4698 3.925299 GTCAGCCTAGAGTTTTCCGTAAC 59.075 47.826 0.00 0.00 0.00 2.50
1684 4714 2.147958 GTAACGGATGTTTGCACCTGA 58.852 47.619 0.00 0.00 39.54 3.86
1686 4716 2.779755 ACGGATGTTTGCACCTGATA 57.220 45.000 0.00 0.00 0.00 2.15
1687 4717 2.632377 ACGGATGTTTGCACCTGATAG 58.368 47.619 0.00 0.00 0.00 2.08
1688 4718 1.942657 CGGATGTTTGCACCTGATAGG 59.057 52.381 0.00 0.00 42.49 2.57
1689 4719 2.301346 GGATGTTTGCACCTGATAGGG 58.699 52.381 0.00 0.00 40.58 3.53
1690 4720 1.678101 GATGTTTGCACCTGATAGGGC 59.322 52.381 0.00 1.21 40.58 5.19
1691 4721 0.698238 TGTTTGCACCTGATAGGGCT 59.302 50.000 0.00 0.00 40.58 5.19
1692 4722 1.912731 TGTTTGCACCTGATAGGGCTA 59.087 47.619 0.00 0.00 40.58 3.93
1693 4723 2.307392 TGTTTGCACCTGATAGGGCTAA 59.693 45.455 0.00 1.48 40.58 3.09
1694 4724 2.945668 GTTTGCACCTGATAGGGCTAAG 59.054 50.000 0.00 0.00 40.58 2.18
1695 4725 0.469917 TGCACCTGATAGGGCTAAGC 59.530 55.000 0.00 0.00 40.58 3.09
1696 4726 0.761802 GCACCTGATAGGGCTAAGCT 59.238 55.000 0.00 0.00 40.58 3.74
1697 4727 1.542108 GCACCTGATAGGGCTAAGCTG 60.542 57.143 0.00 0.00 40.58 4.24
1698 4728 0.761802 ACCTGATAGGGCTAAGCTGC 59.238 55.000 0.00 0.00 40.58 5.25
1699 4729 1.055040 CCTGATAGGGCTAAGCTGCT 58.945 55.000 0.00 0.00 0.00 4.24
1700 4730 1.419387 CCTGATAGGGCTAAGCTGCTT 59.581 52.381 19.93 19.93 0.00 3.91
1701 4731 2.158696 CCTGATAGGGCTAAGCTGCTTT 60.159 50.000 21.29 4.40 0.00 3.51
1702 4732 2.877168 CTGATAGGGCTAAGCTGCTTTG 59.123 50.000 21.29 19.20 0.00 2.77
1703 4733 2.505407 TGATAGGGCTAAGCTGCTTTGA 59.495 45.455 24.34 6.37 0.00 2.69
1704 4734 3.137176 TGATAGGGCTAAGCTGCTTTGAT 59.863 43.478 24.34 10.83 0.00 2.57
1705 4735 1.760192 AGGGCTAAGCTGCTTTGATG 58.240 50.000 24.34 12.34 0.00 3.07
1776 4823 2.820037 GTCCCGCTGCCAGCTAAC 60.820 66.667 15.80 6.19 39.60 2.34
1804 4851 2.084546 CGGGTTTCATTGGGAAGTCTC 58.915 52.381 0.00 0.00 36.72 3.36
1805 4852 2.552155 CGGGTTTCATTGGGAAGTCTCA 60.552 50.000 0.00 0.00 36.72 3.27
1809 4856 3.370840 TTCATTGGGAAGTCTCATGGG 57.629 47.619 0.00 0.00 0.00 4.00
1812 4859 0.038166 TTGGGAAGTCTCATGGGCAC 59.962 55.000 0.00 0.00 0.00 5.01
1830 4877 3.489785 GGCACCTATTTTATGTCGACTCG 59.510 47.826 17.92 0.00 0.00 4.18
1842 4913 1.986378 GTCGACTCGGACACATCTTTG 59.014 52.381 8.70 0.00 36.91 2.77
1843 4914 1.883926 TCGACTCGGACACATCTTTGA 59.116 47.619 0.00 0.00 0.00 2.69
1845 4916 2.351835 CGACTCGGACACATCTTTGACT 60.352 50.000 0.00 0.00 0.00 3.41
1861 4932 9.961265 CATCTTTGACTACTATATCCGTTTACA 57.039 33.333 0.00 0.00 0.00 2.41
1889 4960 5.373812 AGTGGTGAGATTTATAACTGGGG 57.626 43.478 0.00 0.00 0.00 4.96
1937 5023 6.149308 TGCATCTACTGGAAATTGTACAAGTG 59.851 38.462 14.65 2.13 0.00 3.16
1960 5046 9.927668 AGTGTTCAAATGTAATTCCAAATAAGG 57.072 29.630 0.00 0.00 33.67 2.69
2026 5133 6.834959 TCTTCATAGCTCATTCGAACAATC 57.165 37.500 0.00 0.00 0.00 2.67
2029 5136 6.594284 TCATAGCTCATTCGAACAATCAAG 57.406 37.500 0.00 0.00 0.00 3.02
2072 5179 4.211164 TCGTCAAGAAAGCACAGTTGTATG 59.789 41.667 0.00 0.00 0.00 2.39
2081 5192 2.226437 GCACAGTTGTATGTCACCTTGG 59.774 50.000 0.00 0.00 0.00 3.61
2206 5327 4.773674 TGTTCTGCTGATTGAAAATGGGAT 59.226 37.500 0.00 0.00 0.00 3.85
2613 5921 4.944962 TTGATGTTTTATCTGAGTGGCG 57.055 40.909 0.00 0.00 0.00 5.69
2678 5990 2.168313 CTCTGGGTGTTTGCAAGGTTTT 59.832 45.455 0.00 0.00 0.00 2.43
2679 5991 2.167487 TCTGGGTGTTTGCAAGGTTTTC 59.833 45.455 0.00 0.00 0.00 2.29
2716 6499 8.575649 TTTTTCTGGTTTGATATTACTCCCTC 57.424 34.615 0.00 0.00 0.00 4.30
2717 6500 5.888982 TCTGGTTTGATATTACTCCCTCC 57.111 43.478 0.00 0.00 0.00 4.30
2718 6501 4.344102 TCTGGTTTGATATTACTCCCTCCG 59.656 45.833 0.00 0.00 0.00 4.63
2719 6502 4.035112 TGGTTTGATATTACTCCCTCCGT 58.965 43.478 0.00 0.00 0.00 4.69
2720 6503 4.472108 TGGTTTGATATTACTCCCTCCGTT 59.528 41.667 0.00 0.00 0.00 4.44
2721 6504 5.055144 GGTTTGATATTACTCCCTCCGTTC 58.945 45.833 0.00 0.00 0.00 3.95
2722 6505 4.950205 TTGATATTACTCCCTCCGTTCC 57.050 45.455 0.00 0.00 0.00 3.62
2723 6506 4.194678 TGATATTACTCCCTCCGTTCCT 57.805 45.455 0.00 0.00 0.00 3.36
2724 6507 5.329191 TGATATTACTCCCTCCGTTCCTA 57.671 43.478 0.00 0.00 0.00 2.94
2725 6508 5.322754 TGATATTACTCCCTCCGTTCCTAG 58.677 45.833 0.00 0.00 0.00 3.02
2726 6509 3.967467 ATTACTCCCTCCGTTCCTAGA 57.033 47.619 0.00 0.00 0.00 2.43
2727 6510 3.967467 TTACTCCCTCCGTTCCTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
2728 6511 5.595814 ATTACTCCCTCCGTTCCTAGATA 57.404 43.478 0.00 0.00 0.00 1.98
2729 6512 5.595814 TTACTCCCTCCGTTCCTAGATAT 57.404 43.478 0.00 0.00 0.00 1.63
2730 6513 3.768878 ACTCCCTCCGTTCCTAGATATG 58.231 50.000 0.00 0.00 0.00 1.78
2731 6514 3.140519 ACTCCCTCCGTTCCTAGATATGT 59.859 47.826 0.00 0.00 0.00 2.29
2732 6515 3.759618 CTCCCTCCGTTCCTAGATATGTC 59.240 52.174 0.00 0.00 0.00 3.06
2733 6516 3.398292 TCCCTCCGTTCCTAGATATGTCT 59.602 47.826 0.00 0.00 38.52 3.41
2734 6517 4.140994 TCCCTCCGTTCCTAGATATGTCTT 60.141 45.833 0.00 0.00 35.87 3.01
2735 6518 4.589374 CCCTCCGTTCCTAGATATGTCTTT 59.411 45.833 0.00 0.00 35.87 2.52
2736 6519 5.070580 CCCTCCGTTCCTAGATATGTCTTTT 59.929 44.000 0.00 0.00 35.87 2.27
2737 6520 6.267014 CCCTCCGTTCCTAGATATGTCTTTTA 59.733 42.308 0.00 0.00 35.87 1.52
2738 6521 7.371936 CCTCCGTTCCTAGATATGTCTTTTAG 58.628 42.308 0.00 0.00 35.87 1.85
2739 6522 7.230913 CCTCCGTTCCTAGATATGTCTTTTAGA 59.769 40.741 0.00 0.00 35.87 2.10
2740 6523 8.167605 TCCGTTCCTAGATATGTCTTTTAGAG 57.832 38.462 0.00 0.00 35.87 2.43
2741 6524 7.997223 TCCGTTCCTAGATATGTCTTTTAGAGA 59.003 37.037 0.00 0.00 35.87 3.10
2742 6525 8.798402 CCGTTCCTAGATATGTCTTTTAGAGAT 58.202 37.037 0.00 0.00 36.61 2.75
2746 6529 9.883293 TCCTAGATATGTCTTTTAGAGATTCCA 57.117 33.333 0.00 0.00 36.61 3.53
2750 6533 9.282569 AGATATGTCTTTTAGAGATTCCAATGC 57.717 33.333 0.00 0.00 36.61 3.56
2751 6534 5.801350 TGTCTTTTAGAGATTCCAATGCG 57.199 39.130 0.00 0.00 36.61 4.73
2752 6535 4.635765 TGTCTTTTAGAGATTCCAATGCGG 59.364 41.667 0.00 0.00 36.61 5.69
2753 6536 4.876107 GTCTTTTAGAGATTCCAATGCGGA 59.124 41.667 0.00 0.00 44.40 5.54
2754 6537 4.876107 TCTTTTAGAGATTCCAATGCGGAC 59.124 41.667 0.00 0.00 46.36 4.79
2755 6538 4.487714 TTTAGAGATTCCAATGCGGACT 57.512 40.909 0.00 0.00 46.36 3.85
2756 6539 5.607939 TTTAGAGATTCCAATGCGGACTA 57.392 39.130 0.00 0.00 46.36 2.59
2757 6540 3.460857 AGAGATTCCAATGCGGACTAC 57.539 47.619 0.00 0.00 46.36 2.73
2758 6541 2.766263 AGAGATTCCAATGCGGACTACA 59.234 45.455 0.00 0.00 46.36 2.74
2759 6542 3.389329 AGAGATTCCAATGCGGACTACAT 59.611 43.478 0.00 0.00 46.36 2.29
2760 6543 4.588951 AGAGATTCCAATGCGGACTACATA 59.411 41.667 0.00 0.00 46.36 2.29
2761 6544 4.632153 AGATTCCAATGCGGACTACATAC 58.368 43.478 0.00 0.00 46.36 2.39
2762 6545 2.502213 TCCAATGCGGACTACATACG 57.498 50.000 0.00 0.00 39.64 3.06
2763 6546 1.067974 TCCAATGCGGACTACATACGG 59.932 52.381 0.00 0.00 39.64 4.02
2764 6547 1.067974 CCAATGCGGACTACATACGGA 59.932 52.381 0.00 0.00 36.56 4.69
2765 6548 2.394708 CAATGCGGACTACATACGGAG 58.605 52.381 0.00 0.00 0.00 4.63
2766 6549 0.314302 ATGCGGACTACATACGGAGC 59.686 55.000 0.00 0.00 0.00 4.70
2767 6550 1.033202 TGCGGACTACATACGGAGCA 61.033 55.000 0.00 0.00 0.00 4.26
2768 6551 0.101759 GCGGACTACATACGGAGCAA 59.898 55.000 0.00 0.00 0.00 3.91
2769 6552 1.470285 GCGGACTACATACGGAGCAAA 60.470 52.381 0.00 0.00 0.00 3.68
2770 6553 2.883574 CGGACTACATACGGAGCAAAA 58.116 47.619 0.00 0.00 0.00 2.44
2771 6554 3.454375 CGGACTACATACGGAGCAAAAT 58.546 45.455 0.00 0.00 0.00 1.82
2772 6555 3.245284 CGGACTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
2773 6556 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
2774 6557 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2775 6558 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2776 6559 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2777 6560 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2778 6561 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2779 6562 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2780 6563 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2781 6564 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2782 6565 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2783 6566 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2784 6567 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2785 6568 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2826 6609 3.567164 ACATCCGTATGTAGTCCTTACCG 59.433 47.826 0.00 0.00 44.66 4.02
2827 6610 3.558931 TCCGTATGTAGTCCTTACCGA 57.441 47.619 0.00 0.00 0.00 4.69
2828 6611 3.884895 TCCGTATGTAGTCCTTACCGAA 58.115 45.455 0.00 0.00 0.00 4.30
2829 6612 4.269183 TCCGTATGTAGTCCTTACCGAAA 58.731 43.478 0.00 0.00 0.00 3.46
2830 6613 4.889409 TCCGTATGTAGTCCTTACCGAAAT 59.111 41.667 0.00 0.00 0.00 2.17
2831 6614 5.009010 TCCGTATGTAGTCCTTACCGAAATC 59.991 44.000 0.00 0.00 0.00 2.17
2832 6615 5.009410 CCGTATGTAGTCCTTACCGAAATCT 59.991 44.000 0.00 0.00 0.00 2.40
2833 6616 6.141462 CGTATGTAGTCCTTACCGAAATCTC 58.859 44.000 0.00 0.00 0.00 2.75
2834 6617 6.017275 CGTATGTAGTCCTTACCGAAATCTCT 60.017 42.308 0.00 0.00 0.00 3.10
2835 6618 7.172190 CGTATGTAGTCCTTACCGAAATCTCTA 59.828 40.741 0.00 0.00 0.00 2.43
2836 6619 7.893124 ATGTAGTCCTTACCGAAATCTCTAA 57.107 36.000 0.00 0.00 0.00 2.10
2837 6620 7.707624 TGTAGTCCTTACCGAAATCTCTAAA 57.292 36.000 0.00 0.00 0.00 1.85
2838 6621 8.125978 TGTAGTCCTTACCGAAATCTCTAAAA 57.874 34.615 0.00 0.00 0.00 1.52
2839 6622 8.587608 TGTAGTCCTTACCGAAATCTCTAAAAA 58.412 33.333 0.00 0.00 0.00 1.94
2840 6623 9.085250 GTAGTCCTTACCGAAATCTCTAAAAAG 57.915 37.037 0.00 0.00 0.00 2.27
2841 6624 7.904205 AGTCCTTACCGAAATCTCTAAAAAGA 58.096 34.615 0.00 0.00 0.00 2.52
2842 6625 7.818446 AGTCCTTACCGAAATCTCTAAAAAGAC 59.182 37.037 0.00 0.00 0.00 3.01
2843 6626 7.818446 GTCCTTACCGAAATCTCTAAAAAGACT 59.182 37.037 0.00 0.00 0.00 3.24
2844 6627 8.373220 TCCTTACCGAAATCTCTAAAAAGACTT 58.627 33.333 0.00 0.00 0.00 3.01
2845 6628 9.649167 CCTTACCGAAATCTCTAAAAAGACTTA 57.351 33.333 0.00 0.00 0.00 2.24
2862 6645 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
2863 6646 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
2908 6692 4.787260 TGTGTGCAGCATGTAATTGATT 57.213 36.364 0.00 0.00 39.31 2.57
2919 6703 6.091849 AGCATGTAATTGATTATGCTAGCTCG 59.908 38.462 17.23 0.00 37.03 5.03
3065 6856 8.098286 TCTAAAGGATCCAAATCGAAAGTACAA 58.902 33.333 15.82 0.00 32.24 2.41
3196 7813 5.163723 GCATTTTGTTGCTCTAGCTCATGTA 60.164 40.000 3.26 0.00 42.66 2.29
3368 10072 7.791766 AGAGAGGATCCTCATTATTCCAGTAAA 59.208 37.037 37.28 0.00 44.99 2.01
3389 10093 9.220767 AGTAAATTCTGAAGGTTGTACTGATTC 57.779 33.333 0.00 0.00 0.00 2.52
3404 10109 2.543067 GATTCTCCGCCTTGGCCACT 62.543 60.000 3.88 0.00 37.80 4.00
3405 10110 2.543067 ATTCTCCGCCTTGGCCACTC 62.543 60.000 3.88 0.00 37.80 3.51
3406 10111 4.020617 CTCCGCCTTGGCCACTCA 62.021 66.667 3.88 0.00 37.80 3.41
3444 10149 6.638610 AGTATATTCAGCCAGATCTGCATAC 58.361 40.000 17.76 13.92 34.19 2.39
3472 10177 3.906846 AGCCAGATCCCAACTATTCTAGG 59.093 47.826 0.00 0.00 0.00 3.02
3479 10184 7.386299 CAGATCCCAACTATTCTAGGAAAATCG 59.614 40.741 0.00 0.00 0.00 3.34
3549 10258 2.689983 AGCTTGGAGAAAATTATGGGCG 59.310 45.455 0.00 0.00 0.00 6.13
3603 10343 8.632679 GTTTTATGGAGAATGGCTCATAATTGA 58.367 33.333 0.00 0.00 45.81 2.57
3683 10423 9.008965 TCATCTTTGTAATCGAAAGGAAAATGA 57.991 29.630 0.00 0.00 32.26 2.57
3819 10560 1.137086 CTCCAGGAATGTACCTCACCG 59.863 57.143 0.00 0.00 38.32 4.94
3831 10572 3.277142 ACCTCACCGGATATTTTGGAC 57.723 47.619 9.46 0.00 36.31 4.02
3834 10575 3.370527 CCTCACCGGATATTTTGGACACT 60.371 47.826 9.46 0.00 33.16 3.55
3836 10577 5.018539 TCACCGGATATTTTGGACACTAG 57.981 43.478 9.46 0.00 0.00 2.57
3843 10584 5.130477 GGATATTTTGGACACTAGACAGGGA 59.870 44.000 0.00 0.00 0.00 4.20
3844 10585 4.993705 ATTTTGGACACTAGACAGGGAA 57.006 40.909 0.00 0.00 0.00 3.97
3845 10586 4.993705 TTTTGGACACTAGACAGGGAAT 57.006 40.909 0.00 0.00 0.00 3.01
3847 10588 1.555075 TGGACACTAGACAGGGAATGC 59.445 52.381 0.00 0.00 0.00 3.56
3848 10589 1.834263 GGACACTAGACAGGGAATGCT 59.166 52.381 0.00 0.00 0.00 3.79
3849 10590 2.419297 GGACACTAGACAGGGAATGCTG 60.419 54.545 0.00 0.00 0.00 4.41
3850 10591 2.234908 GACACTAGACAGGGAATGCTGT 59.765 50.000 0.00 0.00 36.40 4.40
3851 10592 3.441101 ACACTAGACAGGGAATGCTGTA 58.559 45.455 0.00 0.00 33.50 2.74
3852 10593 3.838317 ACACTAGACAGGGAATGCTGTAA 59.162 43.478 0.00 0.00 33.50 2.41
3886 11441 0.899720 TCCAGGTACTACAAAGGCCG 59.100 55.000 0.00 0.00 36.02 6.13
3889 11444 1.196104 AGGTACTACAAAGGCCGCCA 61.196 55.000 13.15 0.00 36.02 5.69
3890 11445 1.022982 GGTACTACAAAGGCCGCCAC 61.023 60.000 13.15 0.00 0.00 5.01
3892 11447 1.818959 TACTACAAAGGCCGCCACGT 61.819 55.000 13.15 7.87 0.00 4.49
3903 11458 4.980805 GCCACGTCGCCACAGGAA 62.981 66.667 0.00 0.00 0.00 3.36
3904 11459 2.047274 CCACGTCGCCACAGGAAT 60.047 61.111 0.00 0.00 0.00 3.01
3905 11460 2.390599 CCACGTCGCCACAGGAATG 61.391 63.158 0.00 0.00 0.00 2.67
3906 11461 2.742372 ACGTCGCCACAGGAATGC 60.742 61.111 0.00 0.00 0.00 3.56
3907 11462 2.434884 CGTCGCCACAGGAATGCT 60.435 61.111 0.00 0.00 0.00 3.79
3908 11463 2.743752 CGTCGCCACAGGAATGCTG 61.744 63.158 0.00 0.00 0.00 4.41
3909 11464 1.672356 GTCGCCACAGGAATGCTGT 60.672 57.895 0.28 0.28 35.11 4.40
3910 11465 0.391130 GTCGCCACAGGAATGCTGTA 60.391 55.000 7.18 0.00 33.23 2.74
3911 11466 0.323302 TCGCCACAGGAATGCTGTAA 59.677 50.000 7.18 0.00 33.23 2.41
3912 11467 1.065491 TCGCCACAGGAATGCTGTAAT 60.065 47.619 7.18 0.00 33.23 1.89
3913 11468 1.064505 CGCCACAGGAATGCTGTAATG 59.935 52.381 7.18 0.64 33.23 1.90
3914 11469 1.406539 GCCACAGGAATGCTGTAATGG 59.593 52.381 7.18 6.31 33.23 3.16
3915 11470 1.406539 CCACAGGAATGCTGTAATGGC 59.593 52.381 7.18 0.00 33.23 4.40
3916 11471 2.093890 CACAGGAATGCTGTAATGGCA 58.906 47.619 7.18 0.00 44.05 4.92
3917 11472 2.094675 ACAGGAATGCTGTAATGGCAC 58.905 47.619 5.37 0.00 42.69 5.01
3918 11473 1.064505 CAGGAATGCTGTAATGGCACG 59.935 52.381 0.00 0.00 42.69 5.34
3919 11474 1.094785 GGAATGCTGTAATGGCACGT 58.905 50.000 0.00 0.00 42.69 4.49
3920 11475 1.064060 GGAATGCTGTAATGGCACGTC 59.936 52.381 0.00 0.00 42.69 4.34
3933 11488 2.932663 CACGTCCAGTGGCAAGATT 58.067 52.632 3.51 0.00 46.77 2.40
3944 11499 1.811965 TGGCAAGATTTCCGTGTCATG 59.188 47.619 0.00 0.00 34.07 3.07
3949 11504 1.003580 AGATTTCCGTGTCATGGTGCT 59.996 47.619 10.97 2.21 0.00 4.40
3950 11505 1.398390 GATTTCCGTGTCATGGTGCTC 59.602 52.381 10.97 3.01 0.00 4.26
3951 11506 0.948623 TTTCCGTGTCATGGTGCTCG 60.949 55.000 10.97 0.00 0.00 5.03
3984 11539 1.402259 CGACGAGCACCATCTAGAGTT 59.598 52.381 0.00 0.00 0.00 3.01
3989 11544 1.478510 AGCACCATCTAGAGTTGGTCG 59.521 52.381 14.04 11.13 44.03 4.79
4026 11581 1.744320 CGGTATCGAGCACCATCCCA 61.744 60.000 16.75 0.00 39.00 4.37
4027 11582 0.687354 GGTATCGAGCACCATCCCAT 59.313 55.000 12.86 0.00 36.01 4.00
4028 11583 1.338200 GGTATCGAGCACCATCCCATC 60.338 57.143 12.86 0.00 36.01 3.51
4029 11584 0.976641 TATCGAGCACCATCCCATCC 59.023 55.000 0.00 0.00 0.00 3.51
4030 11585 1.772819 ATCGAGCACCATCCCATCCC 61.773 60.000 0.00 0.00 0.00 3.85
4053 11608 3.749088 GTCACCGTGATCACCACAAAATA 59.251 43.478 20.03 0.00 45.98 1.40
4073 11628 1.300971 CCGTGGTCTGGTGCTTCATG 61.301 60.000 0.00 0.00 0.00 3.07
4108 11663 1.478510 AGATGGTGCGTTAGAGACCAG 59.521 52.381 0.00 0.00 42.97 4.00
4121 11676 2.045340 ACCAGTTACCATGCCGGC 60.045 61.111 22.73 22.73 39.03 6.13
4122 11677 2.828549 CCAGTTACCATGCCGGCC 60.829 66.667 26.77 6.18 39.03 6.13
4189 11744 3.120321 ACATTGACAGGCGTTCAAGTA 57.880 42.857 9.26 0.00 0.00 2.24
4204 11759 7.279313 GGCGTTCAAGTATTATCTGAAACCTAA 59.721 37.037 0.00 0.00 0.00 2.69
4219 11774 0.396811 CCTAATTACAGCCTCCCCCG 59.603 60.000 0.00 0.00 0.00 5.73
4229 11784 4.760047 CTCCCCCGCACGTCCAAG 62.760 72.222 0.00 0.00 0.00 3.61
4232 11787 2.046314 CCCCGCACGTCCAAGAAT 60.046 61.111 0.00 0.00 0.00 2.40
4233 11788 1.674322 CCCCGCACGTCCAAGAATT 60.674 57.895 0.00 0.00 0.00 2.17
4234 11789 0.391927 CCCCGCACGTCCAAGAATTA 60.392 55.000 0.00 0.00 0.00 1.40
4235 11790 0.725117 CCCGCACGTCCAAGAATTAC 59.275 55.000 0.00 0.00 0.00 1.89
4238 11793 2.073816 CGCACGTCCAAGAATTACCTT 58.926 47.619 0.00 0.00 0.00 3.50
4240 11795 3.071479 GCACGTCCAAGAATTACCTTCA 58.929 45.455 0.00 0.00 36.24 3.02
4241 11796 3.500680 GCACGTCCAAGAATTACCTTCAA 59.499 43.478 0.00 0.00 36.24 2.69
4242 11797 4.612939 GCACGTCCAAGAATTACCTTCAAC 60.613 45.833 0.00 0.00 36.24 3.18
4243 11798 4.755123 CACGTCCAAGAATTACCTTCAACT 59.245 41.667 0.00 0.00 36.24 3.16
4244 11799 4.995487 ACGTCCAAGAATTACCTTCAACTC 59.005 41.667 0.00 0.00 36.24 3.01
4245 11800 4.392138 CGTCCAAGAATTACCTTCAACTCC 59.608 45.833 0.00 0.00 36.24 3.85
4246 11801 4.700692 GTCCAAGAATTACCTTCAACTCCC 59.299 45.833 0.00 0.00 36.24 4.30
4247 11802 3.689649 CCAAGAATTACCTTCAACTCCCG 59.310 47.826 0.00 0.00 36.24 5.14
4248 11803 2.987232 AGAATTACCTTCAACTCCCGC 58.013 47.619 0.00 0.00 36.24 6.13
4249 11804 2.304761 AGAATTACCTTCAACTCCCGCA 59.695 45.455 0.00 0.00 36.24 5.69
4250 11805 2.403252 ATTACCTTCAACTCCCGCAG 57.597 50.000 0.00 0.00 0.00 5.18
4251 11806 0.321298 TTACCTTCAACTCCCGCAGC 60.321 55.000 0.00 0.00 0.00 5.25
4252 11807 1.192146 TACCTTCAACTCCCGCAGCT 61.192 55.000 0.00 0.00 0.00 4.24
4253 11808 2.037136 CCTTCAACTCCCGCAGCTG 61.037 63.158 10.11 10.11 0.00 4.24
4254 11809 2.669569 TTCAACTCCCGCAGCTGC 60.670 61.111 29.12 29.12 37.78 5.25
4255 11810 3.474486 TTCAACTCCCGCAGCTGCA 62.474 57.895 36.03 17.83 42.21 4.41
4256 11811 3.429141 CAACTCCCGCAGCTGCAG 61.429 66.667 36.03 27.52 42.21 4.41
4276 11831 4.096984 GCAGCAGGCTCACATTTTATTACT 59.903 41.667 0.00 0.00 40.25 2.24
4303 11858 5.929415 TGCTGATTCTACACACGATTACAAA 59.071 36.000 0.00 0.00 0.00 2.83
4310 11865 8.996988 TTCTACACACGATTACAAAACATTTC 57.003 30.769 0.00 0.00 0.00 2.17
4370 11925 1.811679 GCAGAACTGGTAGAGCGGC 60.812 63.158 3.99 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 8.368668 GCCTACAATACTATGAAACTGACCTAT 58.631 37.037 0.00 0.00 0.00 2.57
239 240 8.408043 TGAGAAAATCACACAAAATATGAGGT 57.592 30.769 0.00 0.00 31.12 3.85
540 553 0.802222 CCGACGCGTCTGATGTGATT 60.802 55.000 33.94 0.00 0.00 2.57
666 3571 3.743911 CGTGTACCAGTAAATGCTTGTGA 59.256 43.478 0.00 0.00 0.00 3.58
667 3572 3.743911 TCGTGTACCAGTAAATGCTTGTG 59.256 43.478 0.00 0.00 0.00 3.33
687 3594 3.000727 GTGTGGATTTTAGAGTGGGTCG 58.999 50.000 0.00 0.00 0.00 4.79
726 3633 4.151157 AGCTGCGCTGAAATTTTGAATTTC 59.849 37.500 19.32 15.64 37.57 2.17
730 3638 2.798976 AGCTGCGCTGAAATTTTGAA 57.201 40.000 19.32 0.00 37.57 2.69
736 3644 0.961019 TTCCAAAGCTGCGCTGAAAT 59.039 45.000 19.32 0.00 39.62 2.17
744 3652 7.656707 TTATTTCAGAAATTTCCAAAGCTGC 57.343 32.000 13.71 0.00 32.38 5.25
753 3661 8.659491 GCATGGTCCTTTTATTTCAGAAATTTC 58.341 33.333 13.71 10.33 32.38 2.17
756 3664 6.332630 CGCATGGTCCTTTTATTTCAGAAAT 58.667 36.000 13.06 13.06 34.90 2.17
779 3687 5.287035 GGTTTTTGCTTTGATATGAAGAGCG 59.713 40.000 0.71 0.00 36.17 5.03
982 3945 0.480252 ATAGCTTGGAAGGGATGGCC 59.520 55.000 0.00 0.00 0.00 5.36
1161 4131 1.219393 GAAGAAGCCGGTCAGGGAG 59.781 63.158 1.90 0.00 41.48 4.30
1553 4583 1.837439 TCCTCACTTGTGTCACAACCT 59.163 47.619 14.48 0.03 33.96 3.50
1668 4698 1.942657 CCTATCAGGTGCAAACATCCG 59.057 52.381 0.00 0.00 0.00 4.18
1684 4714 3.484407 CATCAAAGCAGCTTAGCCCTAT 58.516 45.455 8.45 0.00 34.23 2.57
1686 4716 1.760192 CATCAAAGCAGCTTAGCCCT 58.240 50.000 8.45 0.00 34.23 5.19
1687 4717 0.101939 GCATCAAAGCAGCTTAGCCC 59.898 55.000 8.45 0.00 34.23 5.19
1688 4718 0.813184 TGCATCAAAGCAGCTTAGCC 59.187 50.000 8.45 0.00 40.11 3.93
1696 4726 2.095617 CGAACACATCTGCATCAAAGCA 60.096 45.455 0.00 0.00 43.35 3.91
1697 4727 2.512885 CGAACACATCTGCATCAAAGC 58.487 47.619 0.00 0.00 0.00 3.51
1698 4728 2.159476 CCCGAACACATCTGCATCAAAG 60.159 50.000 0.00 0.00 0.00 2.77
1699 4729 1.811965 CCCGAACACATCTGCATCAAA 59.188 47.619 0.00 0.00 0.00 2.69
1700 4730 1.271325 ACCCGAACACATCTGCATCAA 60.271 47.619 0.00 0.00 0.00 2.57
1701 4731 0.324614 ACCCGAACACATCTGCATCA 59.675 50.000 0.00 0.00 0.00 3.07
1702 4732 1.131126 CAACCCGAACACATCTGCATC 59.869 52.381 0.00 0.00 0.00 3.91
1703 4733 1.167851 CAACCCGAACACATCTGCAT 58.832 50.000 0.00 0.00 0.00 3.96
1704 4734 0.888736 CCAACCCGAACACATCTGCA 60.889 55.000 0.00 0.00 0.00 4.41
1705 4735 1.875963 CCAACCCGAACACATCTGC 59.124 57.895 0.00 0.00 0.00 4.26
1776 4823 2.228822 CCCAATGAAACCCGAGAAACTG 59.771 50.000 0.00 0.00 0.00 3.16
1804 4851 4.024048 GTCGACATAAAATAGGTGCCCATG 60.024 45.833 11.55 0.00 0.00 3.66
1805 4852 4.134563 GTCGACATAAAATAGGTGCCCAT 58.865 43.478 11.55 0.00 0.00 4.00
1809 4856 3.489785 CCGAGTCGACATAAAATAGGTGC 59.510 47.826 19.50 0.00 0.00 5.01
1812 4859 4.738740 GTGTCCGAGTCGACATAAAATAGG 59.261 45.833 19.50 5.69 44.27 2.57
1822 4869 1.986378 CAAAGATGTGTCCGAGTCGAC 59.014 52.381 15.64 7.70 0.00 4.20
1830 4877 7.085116 CGGATATAGTAGTCAAAGATGTGTCC 58.915 42.308 0.00 0.00 0.00 4.02
1836 4907 9.962783 GTGTAAACGGATATAGTAGTCAAAGAT 57.037 33.333 0.00 0.00 0.00 2.40
1843 4914 9.844257 ACTAAGAGTGTAAACGGATATAGTAGT 57.156 33.333 0.00 0.00 0.00 2.73
1845 4916 9.060347 CCACTAAGAGTGTAAACGGATATAGTA 57.940 37.037 5.92 0.00 44.50 1.82
1861 4932 8.478877 CCAGTTATAAATCTCACCACTAAGAGT 58.521 37.037 0.00 0.00 33.63 3.24
1911 4991 6.372659 ACTTGTACAATTTCCAGTAGATGCAG 59.627 38.462 9.13 0.00 0.00 4.41
1917 4997 7.490962 TGAACACTTGTACAATTTCCAGTAG 57.509 36.000 9.13 0.00 0.00 2.57
1960 5046 3.442273 ACTCCAATGACTTCGAGAGACTC 59.558 47.826 0.00 0.00 41.84 3.36
1964 5050 4.416620 GTGTACTCCAATGACTTCGAGAG 58.583 47.826 0.00 0.00 0.00 3.20
2026 5133 3.190327 TCCAAATCGTATGCCAACACTTG 59.810 43.478 0.00 0.00 0.00 3.16
2029 5136 3.952535 GATCCAAATCGTATGCCAACAC 58.047 45.455 0.00 0.00 0.00 3.32
2055 5162 3.815401 GGTGACATACAACTGTGCTTTCT 59.185 43.478 0.00 0.00 32.72 2.52
2072 5179 1.134189 GGTAGGTATGGCCAAGGTGAC 60.134 57.143 10.96 5.65 40.61 3.67
2081 5192 6.414732 TGCATAAATCTATGGTAGGTATGGC 58.585 40.000 0.00 0.00 36.22 4.40
2493 5776 3.324846 ACAGCTCATACCAAGTGTCTTGA 59.675 43.478 10.54 0.00 0.00 3.02
2587 5884 7.429340 CGCCACTCAGATAAAACATCAAAATAC 59.571 37.037 0.00 0.00 0.00 1.89
2589 5891 6.150976 TCGCCACTCAGATAAAACATCAAAAT 59.849 34.615 0.00 0.00 0.00 1.82
2603 5911 0.037882 CTCTTGCTTCGCCACTCAGA 60.038 55.000 0.00 0.00 0.00 3.27
2639 5951 2.093500 AGAGAGGATTGTATGTGCGCAA 60.093 45.455 14.00 2.60 0.00 4.85
2706 6489 3.967467 TCTAGGAACGGAGGGAGTAAT 57.033 47.619 0.00 0.00 0.00 1.89
2707 6490 3.967467 ATCTAGGAACGGAGGGAGTAA 57.033 47.619 0.00 0.00 0.00 2.24
2708 6491 4.353191 ACATATCTAGGAACGGAGGGAGTA 59.647 45.833 0.00 0.00 0.00 2.59
2709 6492 3.140519 ACATATCTAGGAACGGAGGGAGT 59.859 47.826 0.00 0.00 0.00 3.85
2710 6493 3.759618 GACATATCTAGGAACGGAGGGAG 59.240 52.174 0.00 0.00 0.00 4.30
2711 6494 3.398292 AGACATATCTAGGAACGGAGGGA 59.602 47.826 0.00 0.00 31.46 4.20
2712 6495 3.768878 AGACATATCTAGGAACGGAGGG 58.231 50.000 0.00 0.00 31.46 4.30
2713 6496 5.793030 AAAGACATATCTAGGAACGGAGG 57.207 43.478 0.00 0.00 33.57 4.30
2714 6497 8.167605 TCTAAAAGACATATCTAGGAACGGAG 57.832 38.462 0.00 0.00 33.57 4.63
2715 6498 7.997223 TCTCTAAAAGACATATCTAGGAACGGA 59.003 37.037 0.00 0.00 33.57 4.69
2716 6499 8.167605 TCTCTAAAAGACATATCTAGGAACGG 57.832 38.462 0.00 0.00 33.57 4.44
2720 6503 9.883293 TGGAATCTCTAAAAGACATATCTAGGA 57.117 33.333 0.00 0.00 36.65 2.94
2724 6507 9.282569 GCATTGGAATCTCTAAAAGACATATCT 57.717 33.333 0.00 0.00 36.65 1.98
2725 6508 8.226448 CGCATTGGAATCTCTAAAAGACATATC 58.774 37.037 0.00 0.00 36.65 1.63
2726 6509 7.173907 CCGCATTGGAATCTCTAAAAGACATAT 59.826 37.037 0.00 0.00 42.00 1.78
2727 6510 6.483307 CCGCATTGGAATCTCTAAAAGACATA 59.517 38.462 0.00 0.00 42.00 2.29
2728 6511 5.297776 CCGCATTGGAATCTCTAAAAGACAT 59.702 40.000 0.00 0.00 42.00 3.06
2729 6512 4.635765 CCGCATTGGAATCTCTAAAAGACA 59.364 41.667 0.00 0.00 42.00 3.41
2730 6513 4.876107 TCCGCATTGGAATCTCTAAAAGAC 59.124 41.667 0.00 0.00 46.38 3.01
2731 6514 5.097742 TCCGCATTGGAATCTCTAAAAGA 57.902 39.130 0.00 0.00 46.38 2.52
2744 6527 1.067974 TCCGTATGTAGTCCGCATTGG 59.932 52.381 0.00 0.00 40.09 3.16
2745 6528 2.394708 CTCCGTATGTAGTCCGCATTG 58.605 52.381 0.00 0.00 0.00 2.82
2746 6529 1.269621 GCTCCGTATGTAGTCCGCATT 60.270 52.381 0.00 0.00 0.00 3.56
2747 6530 0.314302 GCTCCGTATGTAGTCCGCAT 59.686 55.000 0.00 0.00 0.00 4.73
2748 6531 1.033202 TGCTCCGTATGTAGTCCGCA 61.033 55.000 0.00 0.00 0.00 5.69
2749 6532 0.101759 TTGCTCCGTATGTAGTCCGC 59.898 55.000 0.00 0.00 0.00 5.54
2750 6533 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
2751 6534 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2752 6535 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2753 6536 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2754 6537 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2755 6538 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2756 6539 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2757 6540 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2758 6541 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2759 6542 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2760 6543 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2761 6544 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2762 6545 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2763 6546 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2794 6577 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
2795 6578 8.546322 AGGACTACATACGGATGTATATAGACA 58.454 37.037 20.64 2.07 45.42 3.41
2796 6579 8.961294 AGGACTACATACGGATGTATATAGAC 57.039 38.462 20.64 10.95 45.42 2.59
2799 6582 9.618890 GGTAAGGACTACATACGGATGTATATA 57.381 37.037 20.64 0.52 45.42 0.86
2800 6583 7.281774 CGGTAAGGACTACATACGGATGTATAT 59.718 40.741 20.64 12.15 45.42 0.86
2801 6584 6.595326 CGGTAAGGACTACATACGGATGTATA 59.405 42.308 20.64 7.39 45.42 1.47
2802 6585 5.413833 CGGTAAGGACTACATACGGATGTAT 59.586 44.000 20.64 11.04 45.42 2.29
2803 6586 4.756642 CGGTAAGGACTACATACGGATGTA 59.243 45.833 19.32 19.32 44.77 2.29
2805 6588 3.817084 TCGGTAAGGACTACATACGGATG 59.183 47.826 5.94 5.94 39.16 3.51
2806 6589 4.090761 TCGGTAAGGACTACATACGGAT 57.909 45.455 0.00 0.00 31.45 4.18
2807 6590 3.558931 TCGGTAAGGACTACATACGGA 57.441 47.619 0.00 0.00 31.45 4.69
2808 6591 4.637483 TTTCGGTAAGGACTACATACGG 57.363 45.455 0.00 0.00 31.45 4.02
2809 6592 6.017275 AGAGATTTCGGTAAGGACTACATACG 60.017 42.308 0.00 0.00 31.45 3.06
2810 6593 7.274603 AGAGATTTCGGTAAGGACTACATAC 57.725 40.000 0.00 0.00 31.45 2.39
2811 6594 8.985315 TTAGAGATTTCGGTAAGGACTACATA 57.015 34.615 0.00 0.00 31.45 2.29
2812 6595 7.893124 TTAGAGATTTCGGTAAGGACTACAT 57.107 36.000 0.00 0.00 31.45 2.29
2813 6596 7.707624 TTTAGAGATTTCGGTAAGGACTACA 57.292 36.000 0.00 0.00 31.45 2.74
2814 6597 8.992835 TTTTTAGAGATTTCGGTAAGGACTAC 57.007 34.615 0.00 0.00 0.00 2.73
2815 6598 9.028284 TCTTTTTAGAGATTTCGGTAAGGACTA 57.972 33.333 0.00 0.00 0.00 2.59
2816 6599 7.818446 GTCTTTTTAGAGATTTCGGTAAGGACT 59.182 37.037 0.00 0.00 0.00 3.85
2817 6600 7.818446 AGTCTTTTTAGAGATTTCGGTAAGGAC 59.182 37.037 0.00 0.00 0.00 3.85
2818 6601 7.904205 AGTCTTTTTAGAGATTTCGGTAAGGA 58.096 34.615 0.00 0.00 0.00 3.36
2819 6602 8.549338 AAGTCTTTTTAGAGATTTCGGTAAGG 57.451 34.615 0.00 0.00 0.00 2.69
2836 6619 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
2837 6620 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
2838 6621 8.706521 GTCCCTCTGTTCCTAAATATAAGTCTT 58.293 37.037 0.00 0.00 0.00 3.01
2839 6622 8.068733 AGTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
2840 6623 8.252624 AGTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
2841 6624 9.900112 ATAGTCCCTCTGTTCCTAAATATAAGT 57.100 33.333 0.00 0.00 0.00 2.24
2858 6641 9.998106 TGCAAACTTCTATAAATATAGTCCCTC 57.002 33.333 7.21 0.00 37.51 4.30
2908 6692 2.362397 CTCAACCTTCCGAGCTAGCATA 59.638 50.000 18.83 0.00 0.00 3.14
2919 6703 5.791336 AAATTGACCTTTCTCAACCTTCC 57.209 39.130 0.00 0.00 32.95 3.46
2984 6772 9.227777 TCAAGCCTCATCAAGATATTATGATTG 57.772 33.333 2.39 0.00 34.12 2.67
2985 6773 9.803507 TTCAAGCCTCATCAAGATATTATGATT 57.196 29.630 2.39 0.00 34.12 2.57
3135 6932 6.069088 ACAGTGGTTTTGGATCAGGGATATAA 60.069 38.462 0.00 0.00 0.00 0.98
3196 7813 9.869757 AAAAACTAAAGCAGTGAGTACAAAAAT 57.130 25.926 0.00 0.00 37.63 1.82
3318 10018 4.096081 GCAATCTCTCCAGGAAAGATGTTG 59.904 45.833 6.01 4.11 30.35 3.33
3322 10022 3.779183 TCTGCAATCTCTCCAGGAAAGAT 59.221 43.478 0.00 0.00 0.00 2.40
3368 10072 6.410540 GGAGAATCAGTACAACCTTCAGAAT 58.589 40.000 0.00 0.00 36.25 2.40
3389 10093 3.335356 ATGAGTGGCCAAGGCGGAG 62.335 63.158 7.24 0.00 43.06 4.63
3405 10110 9.149225 GCTGAATATACTCCAATCTTAGTGATG 57.851 37.037 0.00 0.00 35.21 3.07
3406 10111 8.317679 GGCTGAATATACTCCAATCTTAGTGAT 58.682 37.037 0.00 0.00 36.89 3.06
3444 10149 1.561542 AGTTGGGATCTGGCTAGGTTG 59.438 52.381 0.00 0.00 0.00 3.77
3472 10177 7.810766 TTTTGGCATAATCACTTCGATTTTC 57.189 32.000 0.00 0.00 41.83 2.29
3549 10258 6.261826 CCTCCATCTTGTTAGGACATTGAATC 59.738 42.308 0.00 0.00 35.29 2.52
3683 10423 5.064441 GCATTACAAAGAACAATGCTCCT 57.936 39.130 10.43 0.00 46.97 3.69
3819 10560 5.130477 TCCCTGTCTAGTGTCCAAAATATCC 59.870 44.000 0.00 0.00 0.00 2.59
3831 10572 4.471904 TTACAGCATTCCCTGTCTAGTG 57.528 45.455 0.00 0.00 44.48 2.74
3834 10575 3.433598 GCCATTACAGCATTCCCTGTCTA 60.434 47.826 0.00 0.00 44.48 2.59
3836 10577 1.678101 GCCATTACAGCATTCCCTGTC 59.322 52.381 0.00 0.00 44.48 3.51
3845 10586 4.535781 AGGTAAATCATGCCATTACAGCA 58.464 39.130 13.49 0.00 45.94 4.41
3847 10588 5.132502 TGGAGGTAAATCATGCCATTACAG 58.867 41.667 13.49 0.00 35.99 2.74
3848 10589 5.122707 TGGAGGTAAATCATGCCATTACA 57.877 39.130 13.49 0.00 35.99 2.41
3849 10590 4.520492 CCTGGAGGTAAATCATGCCATTAC 59.480 45.833 0.00 0.00 35.99 1.89
3850 10591 4.728772 CCTGGAGGTAAATCATGCCATTA 58.271 43.478 0.00 0.00 35.99 1.90
3851 10592 3.569491 CCTGGAGGTAAATCATGCCATT 58.431 45.455 0.00 0.00 35.99 3.16
3852 10593 3.234234 CCTGGAGGTAAATCATGCCAT 57.766 47.619 0.00 0.00 35.99 4.40
3886 11441 4.980805 TTCCTGTGGCGACGTGGC 62.981 66.667 14.82 14.82 45.12 5.01
3889 11444 2.742372 GCATTCCTGTGGCGACGT 60.742 61.111 0.00 0.00 0.00 4.34
3890 11445 2.434884 AGCATTCCTGTGGCGACG 60.435 61.111 0.00 0.00 0.00 5.12
3901 11456 1.064060 GGACGTGCCATTACAGCATTC 59.936 52.381 0.00 0.00 43.29 2.67
3902 11457 1.094785 GGACGTGCCATTACAGCATT 58.905 50.000 0.00 0.00 43.29 3.56
3903 11458 0.035534 TGGACGTGCCATTACAGCAT 60.036 50.000 4.04 0.00 43.33 3.79
3904 11459 1.373059 TGGACGTGCCATTACAGCA 59.627 52.632 4.04 0.00 43.33 4.41
3905 11460 4.294523 TGGACGTGCCATTACAGC 57.705 55.556 4.04 0.00 43.33 4.40
3912 11467 4.182433 TTGCCACTGGACGTGCCA 62.182 61.111 4.04 5.58 46.96 4.92
3913 11468 3.357079 CTTGCCACTGGACGTGCC 61.357 66.667 4.04 0.43 42.42 5.01
3914 11469 1.237285 AATCTTGCCACTGGACGTGC 61.237 55.000 0.00 0.00 42.42 5.34
3915 11470 1.197721 GAAATCTTGCCACTGGACGTG 59.802 52.381 0.00 0.00 43.41 4.49
3916 11471 1.523758 GAAATCTTGCCACTGGACGT 58.476 50.000 0.00 0.00 0.00 4.34
3917 11472 0.804989 GGAAATCTTGCCACTGGACG 59.195 55.000 0.00 0.00 0.00 4.79
3918 11473 0.804989 CGGAAATCTTGCCACTGGAC 59.195 55.000 0.00 0.00 0.00 4.02
3919 11474 0.400213 ACGGAAATCTTGCCACTGGA 59.600 50.000 0.00 0.00 0.00 3.86
3920 11475 0.523072 CACGGAAATCTTGCCACTGG 59.477 55.000 0.00 0.00 0.00 4.00
3923 11478 1.234821 TGACACGGAAATCTTGCCAC 58.765 50.000 0.00 0.00 0.00 5.01
3928 11483 1.812571 GCACCATGACACGGAAATCTT 59.187 47.619 0.00 0.00 0.00 2.40
3930 11485 1.398390 GAGCACCATGACACGGAAATC 59.602 52.381 0.00 0.00 0.00 2.17
3933 11488 1.374125 CGAGCACCATGACACGGAA 60.374 57.895 0.00 0.00 0.00 4.30
3975 11530 1.743958 CGTCCACGACCAACTCTAGAT 59.256 52.381 0.00 0.00 43.02 1.98
4014 11569 2.111878 CGGGATGGGATGGTGCTC 59.888 66.667 0.00 0.00 0.00 4.26
4053 11608 1.768684 ATGAAGCACCAGACCACGGT 61.769 55.000 0.00 0.00 37.16 4.83
4073 11628 1.303309 CATCTCGGGATCAAAGTGCC 58.697 55.000 0.00 0.00 0.00 5.01
4121 11676 4.814294 GCTAGGCACGTGTCCCGG 62.814 72.222 18.18 13.79 42.24 5.73
4125 11680 0.381089 ATACTCGCTAGGCACGTGTC 59.619 55.000 13.44 13.44 38.16 3.67
4128 11683 0.815734 AACATACTCGCTAGGCACGT 59.184 50.000 0.00 0.00 0.00 4.49
4189 11744 7.939588 GGAGGCTGTAATTAGGTTTCAGATAAT 59.060 37.037 0.00 0.00 37.39 1.28
4204 11759 2.690881 TGCGGGGGAGGCTGTAAT 60.691 61.111 0.00 0.00 0.00 1.89
4219 11774 3.071479 TGAAGGTAATTCTTGGACGTGC 58.929 45.455 0.00 0.00 38.83 5.34
4223 11778 4.700692 GGGAGTTGAAGGTAATTCTTGGAC 59.299 45.833 0.00 0.00 38.83 4.02
4225 11780 3.689649 CGGGAGTTGAAGGTAATTCTTGG 59.310 47.826 0.00 0.00 38.83 3.61
4227 11782 3.244770 TGCGGGAGTTGAAGGTAATTCTT 60.245 43.478 0.00 0.00 38.83 2.52
4228 11783 2.304761 TGCGGGAGTTGAAGGTAATTCT 59.695 45.455 0.00 0.00 38.83 2.40
4229 11784 2.678336 CTGCGGGAGTTGAAGGTAATTC 59.322 50.000 0.00 0.00 38.50 2.17
4230 11785 2.711542 CTGCGGGAGTTGAAGGTAATT 58.288 47.619 0.00 0.00 0.00 1.40
4232 11787 0.321298 GCTGCGGGAGTTGAAGGTAA 60.321 55.000 0.00 0.00 0.00 2.85
4233 11788 1.192146 AGCTGCGGGAGTTGAAGGTA 61.192 55.000 0.00 0.00 0.00 3.08
4234 11789 2.032681 GCTGCGGGAGTTGAAGGT 59.967 61.111 0.00 0.00 0.00 3.50
4235 11790 2.037136 CAGCTGCGGGAGTTGAAGG 61.037 63.158 7.58 0.00 34.91 3.46
4238 11793 3.889134 CTGCAGCTGCGGGAGTTGA 62.889 63.158 35.45 14.76 45.83 3.18
4248 11803 3.432588 GTGAGCCTGCTGCAGCTG 61.433 66.667 36.61 34.20 44.83 4.24
4249 11804 2.766306 AATGTGAGCCTGCTGCAGCT 62.766 55.000 36.61 22.22 44.83 4.24
4250 11805 1.874345 AAATGTGAGCCTGCTGCAGC 61.874 55.000 31.89 31.89 44.83 5.25
4251 11806 0.601558 AAAATGTGAGCCTGCTGCAG 59.398 50.000 22.44 22.44 44.83 4.41
4252 11807 1.908344 TAAAATGTGAGCCTGCTGCA 58.092 45.000 0.88 0.88 44.83 4.41
4253 11808 3.515330 AATAAAATGTGAGCCTGCTGC 57.485 42.857 0.00 0.00 41.71 5.25
4254 11809 5.355071 TCAGTAATAAAATGTGAGCCTGCTG 59.645 40.000 0.00 0.00 0.00 4.41
4255 11810 5.500234 TCAGTAATAAAATGTGAGCCTGCT 58.500 37.500 0.00 0.00 0.00 4.24
4256 11811 5.818136 TCAGTAATAAAATGTGAGCCTGC 57.182 39.130 0.00 0.00 0.00 4.85
4257 11812 6.039047 AGCATCAGTAATAAAATGTGAGCCTG 59.961 38.462 0.00 0.00 0.00 4.85
4258 11813 6.039047 CAGCATCAGTAATAAAATGTGAGCCT 59.961 38.462 0.00 0.00 0.00 4.58
4259 11814 6.038603 TCAGCATCAGTAATAAAATGTGAGCC 59.961 38.462 0.00 0.00 0.00 4.70
4260 11815 7.019774 TCAGCATCAGTAATAAAATGTGAGC 57.980 36.000 0.00 0.00 0.00 4.26
4276 11831 3.866883 TCGTGTGTAGAATCAGCATCA 57.133 42.857 0.00 0.00 0.00 3.07
4327 11882 5.220381 GCTGCATTGAGTAATCCAATCATG 58.780 41.667 0.00 0.00 32.40 3.07
4328 11883 4.891168 TGCTGCATTGAGTAATCCAATCAT 59.109 37.500 0.00 0.00 32.40 2.45
4329 11884 4.271661 TGCTGCATTGAGTAATCCAATCA 58.728 39.130 0.00 0.00 32.40 2.57
4330 11885 4.792057 GCTGCTGCATTGAGTAATCCAATC 60.792 45.833 11.11 0.00 39.41 2.67
4331 11886 3.067742 GCTGCTGCATTGAGTAATCCAAT 59.932 43.478 11.11 0.00 39.41 3.16
4332 11887 2.424601 GCTGCTGCATTGAGTAATCCAA 59.575 45.455 11.11 0.00 39.41 3.53
4333 11888 2.019249 GCTGCTGCATTGAGTAATCCA 58.981 47.619 11.11 0.00 39.41 3.41
4334 11889 2.019249 TGCTGCTGCATTGAGTAATCC 58.981 47.619 14.93 0.00 45.31 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.