Multiple sequence alignment - TraesCS7D01G472600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G472600 chr7D 100.000 2847 0 0 1 2847 585649950 585652796 0.000000e+00 5258
1 TraesCS7D01G472600 chr7D 87.240 337 31 9 273 608 398063131 398063456 9.630000e-100 374
2 TraesCS7D01G472600 chr7A 91.223 2142 116 27 609 2713 676102347 676104453 0.000000e+00 2848
3 TraesCS7D01G472600 chr7B 90.520 1519 83 22 732 2230 655040422 655041899 0.000000e+00 1951
4 TraesCS7D01G472600 chr7B 87.871 404 28 6 2222 2611 655043530 655043926 3.340000e-124 455
5 TraesCS7D01G472600 chr7B 94.118 238 13 1 2610 2847 655058618 655058854 7.500000e-96 361
6 TraesCS7D01G472600 chrUn 92.763 608 31 6 1 607 179802944 179802349 0.000000e+00 867
7 TraesCS7D01G472600 chr1A 92.447 609 34 6 1 607 98573846 98574444 0.000000e+00 859
8 TraesCS7D01G472600 chr1A 91.954 609 35 9 1 607 98499832 98500428 0.000000e+00 841
9 TraesCS7D01G472600 chr3A 92.257 607 34 8 1 606 485589986 485590580 0.000000e+00 848
10 TraesCS7D01G472600 chr3A 92.092 607 35 8 1 606 485674609 485675203 0.000000e+00 843
11 TraesCS7D01G472600 chr3A 91.148 610 41 10 1 609 530930695 530931292 0.000000e+00 815
12 TraesCS7D01G472600 chr3A 90.132 608 49 8 1 607 514049024 514049621 0.000000e+00 780
13 TraesCS7D01G472600 chr6A 91.447 608 39 7 1 606 604577044 604577640 0.000000e+00 822
14 TraesCS7D01G472600 chr6A 88.727 275 18 8 333 605 203773441 203773178 9.840000e-85 324
15 TraesCS7D01G472600 chr2A 90.789 608 43 8 1 607 132225701 132225106 0.000000e+00 800
16 TraesCS7D01G472600 chr4A 90.789 608 40 9 1 606 29149063 29149656 0.000000e+00 798
17 TraesCS7D01G472600 chr4A 85.714 161 16 5 446 606 667172122 667172275 2.270000e-36 163
18 TraesCS7D01G472600 chr2D 89.073 604 55 5 5 607 195723220 195723813 0.000000e+00 739
19 TraesCS7D01G472600 chr1D 87.154 615 65 10 1 613 325626780 325627382 0.000000e+00 686
20 TraesCS7D01G472600 chr5A 87.055 309 31 7 303 610 17237987 17237687 9.770000e-90 340
21 TraesCS7D01G472600 chr5D 86.731 309 32 6 303 610 23382366 23382066 4.540000e-88 335


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G472600 chr7D 585649950 585652796 2846 False 5258 5258 100.0000 1 2847 1 chr7D.!!$F2 2846
1 TraesCS7D01G472600 chr7A 676102347 676104453 2106 False 2848 2848 91.2230 609 2713 1 chr7A.!!$F1 2104
2 TraesCS7D01G472600 chr7B 655040422 655043926 3504 False 1203 1951 89.1955 732 2611 2 chr7B.!!$F2 1879
3 TraesCS7D01G472600 chrUn 179802349 179802944 595 True 867 867 92.7630 1 607 1 chrUn.!!$R1 606
4 TraesCS7D01G472600 chr1A 98573846 98574444 598 False 859 859 92.4470 1 607 1 chr1A.!!$F2 606
5 TraesCS7D01G472600 chr1A 98499832 98500428 596 False 841 841 91.9540 1 607 1 chr1A.!!$F1 606
6 TraesCS7D01G472600 chr3A 485589986 485590580 594 False 848 848 92.2570 1 606 1 chr3A.!!$F1 605
7 TraesCS7D01G472600 chr3A 485674609 485675203 594 False 843 843 92.0920 1 606 1 chr3A.!!$F2 605
8 TraesCS7D01G472600 chr3A 530930695 530931292 597 False 815 815 91.1480 1 609 1 chr3A.!!$F4 608
9 TraesCS7D01G472600 chr3A 514049024 514049621 597 False 780 780 90.1320 1 607 1 chr3A.!!$F3 606
10 TraesCS7D01G472600 chr6A 604577044 604577640 596 False 822 822 91.4470 1 606 1 chr6A.!!$F1 605
11 TraesCS7D01G472600 chr2A 132225106 132225701 595 True 800 800 90.7890 1 607 1 chr2A.!!$R1 606
12 TraesCS7D01G472600 chr4A 29149063 29149656 593 False 798 798 90.7890 1 606 1 chr4A.!!$F1 605
13 TraesCS7D01G472600 chr2D 195723220 195723813 593 False 739 739 89.0730 5 607 1 chr2D.!!$F1 602
14 TraesCS7D01G472600 chr1D 325626780 325627382 602 False 686 686 87.1540 1 613 1 chr1D.!!$F1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 931 0.449786 CACGGCAGTTGACAAACACA 59.55 50.0 0.0 0.0 38.88 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2407 4106 0.036875 CCTCTGACCCACCAAACTCC 59.963 60.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 187 4.242475 CATTCGTGTAGGAGTTTGTGCTA 58.758 43.478 0.00 0.00 0.00 3.49
490 504 3.502211 TCCGTGAGCCTTCTTTTCATTTC 59.498 43.478 0.00 0.00 0.00 2.17
492 506 4.022849 CCGTGAGCCTTCTTTTCATTTCTT 60.023 41.667 0.00 0.00 0.00 2.52
493 507 4.913924 CGTGAGCCTTCTTTTCATTTCTTG 59.086 41.667 0.00 0.00 0.00 3.02
494 508 5.506317 CGTGAGCCTTCTTTTCATTTCTTGT 60.506 40.000 0.00 0.00 0.00 3.16
495 509 6.276091 GTGAGCCTTCTTTTCATTTCTTGTT 58.724 36.000 0.00 0.00 0.00 2.83
496 510 6.419116 GTGAGCCTTCTTTTCATTTCTTGTTC 59.581 38.462 0.00 0.00 0.00 3.18
497 511 5.523369 AGCCTTCTTTTCATTTCTTGTTCG 58.477 37.500 0.00 0.00 0.00 3.95
498 512 5.299279 AGCCTTCTTTTCATTTCTTGTTCGA 59.701 36.000 0.00 0.00 0.00 3.71
499 513 5.626955 GCCTTCTTTTCATTTCTTGTTCGAG 59.373 40.000 0.00 0.00 0.00 4.04
500 514 6.513393 GCCTTCTTTTCATTTCTTGTTCGAGA 60.513 38.462 0.00 0.00 0.00 4.04
501 515 6.853362 CCTTCTTTTCATTTCTTGTTCGAGAC 59.147 38.462 0.00 0.00 0.00 3.36
502 516 6.300354 TCTTTTCATTTCTTGTTCGAGACC 57.700 37.500 0.00 0.00 0.00 3.85
526 540 3.432326 GGAGACTTGGAGACTTGTGTTGT 60.432 47.826 0.00 0.00 0.00 3.32
567 581 5.835113 ATTATGGCCGTATGCATTATTCC 57.165 39.130 3.54 2.57 43.89 3.01
625 639 3.406595 GATGTGCGGCTAGGGGCTT 62.407 63.158 0.00 0.00 41.46 4.35
661 675 7.404980 ACCTAATTATCCCTGTAAACCTTGAGA 59.595 37.037 0.00 0.00 0.00 3.27
776 793 3.451178 ACAGTCTGGTGTATATTTCGCCT 59.549 43.478 4.53 0.00 36.54 5.52
793 810 1.488393 GCCTGCTAGGTTCTGAGGATT 59.512 52.381 0.00 0.00 37.80 3.01
906 931 0.449786 CACGGCAGTTGACAAACACA 59.550 50.000 0.00 0.00 38.88 3.72
930 955 4.901849 TGACCCTCCTTATCCATTAGTGAG 59.098 45.833 0.00 0.00 0.00 3.51
931 956 4.897051 ACCCTCCTTATCCATTAGTGAGT 58.103 43.478 0.00 0.00 0.00 3.41
932 957 6.039415 ACCCTCCTTATCCATTAGTGAGTA 57.961 41.667 0.00 0.00 0.00 2.59
933 958 6.078664 ACCCTCCTTATCCATTAGTGAGTAG 58.921 44.000 0.00 0.00 0.00 2.57
934 959 6.078664 CCCTCCTTATCCATTAGTGAGTAGT 58.921 44.000 0.00 0.00 0.00 2.73
935 960 6.015010 CCCTCCTTATCCATTAGTGAGTAGTG 60.015 46.154 0.00 0.00 0.00 2.74
936 961 6.778069 CCTCCTTATCCATTAGTGAGTAGTGA 59.222 42.308 0.00 0.00 0.00 3.41
967 992 2.164865 CTGGTTCGAGTGAGCTGCCT 62.165 60.000 0.00 0.00 0.00 4.75
1063 1097 4.344865 GCCTCCCGAAGCCCAACA 62.345 66.667 0.00 0.00 0.00 3.33
1129 1163 2.328099 GGAGCCAGCACCAAGAACG 61.328 63.158 0.83 0.00 0.00 3.95
1388 1422 0.454600 CTGGCTTAGCGTAGTTCCGA 59.545 55.000 0.00 0.00 0.00 4.55
1844 1880 4.804420 TCGGCAGGGCATCCTCCT 62.804 66.667 0.00 0.00 42.67 3.69
1849 1885 4.390341 AGGGCATCCTCCTGAGTC 57.610 61.111 0.00 0.00 39.80 3.36
1850 1886 1.393746 AGGGCATCCTCCTGAGTCA 59.606 57.895 0.00 0.00 39.80 3.41
1863 1899 3.823304 TCCTGAGTCATGATCGACCTATG 59.177 47.826 0.00 0.00 36.52 2.23
1980 2024 6.721668 AGACCGTGAATCCTGAGATCAATATA 59.278 38.462 0.00 0.00 0.00 0.86
1981 2025 7.233553 AGACCGTGAATCCTGAGATCAATATAA 59.766 37.037 0.00 0.00 0.00 0.98
1992 2036 9.482627 CCTGAGATCAATATAAACAACTACTCC 57.517 37.037 0.00 0.00 0.00 3.85
2030 2074 8.672823 TCTATGAATCACTAGTACGTGTATGT 57.327 34.615 0.00 0.00 36.33 2.29
2099 2150 4.969196 CGAGTGTGCGCAGTGGGT 62.969 66.667 12.22 0.00 0.00 4.51
2103 2154 1.299089 GTGTGCGCAGTGGGTTTTC 60.299 57.895 12.22 0.00 0.00 2.29
2138 2189 1.411246 GTTGCTTTTTCCCTTTCCCGT 59.589 47.619 0.00 0.00 0.00 5.28
2139 2190 1.324383 TGCTTTTTCCCTTTCCCGTC 58.676 50.000 0.00 0.00 0.00 4.79
2142 2193 0.537828 TTTTTCCCTTTCCCGTCCCG 60.538 55.000 0.00 0.00 0.00 5.14
2143 2194 3.556298 TTTCCCTTTCCCGTCCCGC 62.556 63.158 0.00 0.00 0.00 6.13
2219 2275 1.601419 TAGGGGAGCCTTGTTCGACG 61.601 60.000 0.00 0.00 0.00 5.12
2239 3934 5.349270 CGACGAAAAGATTATACAACACCCA 59.651 40.000 0.00 0.00 0.00 4.51
2267 3962 4.324874 GGGGCTATAATCAATCAGAGGCAT 60.325 45.833 0.00 0.00 0.00 4.40
2294 3989 1.199327 TGTCTCTCGTGAACTTAGCCG 59.801 52.381 0.00 0.00 0.00 5.52
2407 4106 4.147322 GGCGACGACAATGGTGCG 62.147 66.667 0.00 0.00 0.00 5.34
2421 4120 2.112297 TGCGGAGTTTGGTGGGTC 59.888 61.111 0.00 0.00 0.00 4.46
2455 4154 7.789831 TGGGTCTTATCTTGGTTATCAGTAGAT 59.210 37.037 0.00 0.00 38.29 1.98
2463 4172 6.326323 TCTTGGTTATCAGTAGATATGTGGCA 59.674 38.462 0.00 0.00 36.65 4.92
2482 4191 2.651455 CACCATACTAGTGACCGGAGA 58.349 52.381 9.46 0.00 37.42 3.71
2483 4192 3.021695 CACCATACTAGTGACCGGAGAA 58.978 50.000 9.46 0.00 37.42 2.87
2486 4195 1.376543 TACTAGTGACCGGAGAAGCG 58.623 55.000 9.46 0.00 0.00 4.68
2488 4197 1.658686 CTAGTGACCGGAGAAGCGCT 61.659 60.000 9.46 2.64 0.00 5.92
2497 4206 4.087892 AGAAGCGCTGATGCCCGT 62.088 61.111 12.58 0.00 35.36 5.28
2573 4282 2.866762 GCGTTTGTGATGGATCTCCTAC 59.133 50.000 0.00 0.00 36.82 3.18
2589 4298 1.134280 CCTACTGATCTGTGGGCAAGG 60.134 57.143 19.69 11.93 32.02 3.61
2624 4333 1.876799 TGGTGGTACATCTTGTTTGCG 59.123 47.619 0.00 0.00 42.15 4.85
2628 4337 4.320935 GGTGGTACATCTTGTTTGCGAATT 60.321 41.667 0.00 0.00 44.52 2.17
2642 4351 6.640499 TGTTTGCGAATTTAAAGATGTTCCTG 59.360 34.615 0.00 0.00 0.00 3.86
2657 4366 8.602472 AGATGTTCCTGAGAGTAATAGTTCTT 57.398 34.615 0.00 0.00 0.00 2.52
2658 4367 8.691797 AGATGTTCCTGAGAGTAATAGTTCTTC 58.308 37.037 0.00 0.00 0.00 2.87
2689 4398 6.906659 AGAAATCTGTGTGAGCATTGTTAAG 58.093 36.000 0.00 0.00 0.00 1.85
2700 4409 3.445096 AGCATTGTTAAGCAGGTGGAATC 59.555 43.478 0.00 0.00 0.00 2.52
2713 4422 0.461548 TGGAATCTGCTGCCGAGTAG 59.538 55.000 0.00 0.00 33.38 2.57
2714 4423 0.461961 GGAATCTGCTGCCGAGTAGT 59.538 55.000 0.00 0.00 33.79 2.73
2715 4424 1.681793 GGAATCTGCTGCCGAGTAGTA 59.318 52.381 0.00 0.00 33.79 1.82
2716 4425 2.297597 GGAATCTGCTGCCGAGTAGTAT 59.702 50.000 0.00 0.00 33.79 2.12
2717 4426 3.312828 GAATCTGCTGCCGAGTAGTATG 58.687 50.000 0.00 0.00 33.79 2.39
2718 4427 1.763968 TCTGCTGCCGAGTAGTATGT 58.236 50.000 0.00 0.00 33.79 2.29
2719 4428 2.100197 TCTGCTGCCGAGTAGTATGTT 58.900 47.619 0.00 0.00 33.79 2.71
2720 4429 2.159240 TCTGCTGCCGAGTAGTATGTTG 60.159 50.000 0.00 0.00 33.79 3.33
2721 4430 1.822371 TGCTGCCGAGTAGTATGTTGA 59.178 47.619 0.00 0.00 0.00 3.18
2722 4431 2.232696 TGCTGCCGAGTAGTATGTTGAA 59.767 45.455 0.00 0.00 0.00 2.69
2723 4432 2.603560 GCTGCCGAGTAGTATGTTGAAC 59.396 50.000 0.00 0.00 0.00 3.18
2724 4433 3.187700 CTGCCGAGTAGTATGTTGAACC 58.812 50.000 0.00 0.00 0.00 3.62
2725 4434 2.563620 TGCCGAGTAGTATGTTGAACCA 59.436 45.455 0.00 0.00 0.00 3.67
2726 4435 3.196901 TGCCGAGTAGTATGTTGAACCAT 59.803 43.478 0.00 0.00 0.00 3.55
2727 4436 3.802685 GCCGAGTAGTATGTTGAACCATC 59.197 47.826 0.00 0.00 0.00 3.51
2728 4437 4.369182 CCGAGTAGTATGTTGAACCATCC 58.631 47.826 0.00 0.00 0.00 3.51
2729 4438 4.099573 CCGAGTAGTATGTTGAACCATCCT 59.900 45.833 0.00 0.00 0.00 3.24
2730 4439 5.395324 CCGAGTAGTATGTTGAACCATCCTT 60.395 44.000 0.00 0.00 0.00 3.36
2731 4440 6.106673 CGAGTAGTATGTTGAACCATCCTTT 58.893 40.000 0.00 0.00 0.00 3.11
2732 4441 6.255887 CGAGTAGTATGTTGAACCATCCTTTC 59.744 42.308 0.00 0.00 0.00 2.62
2733 4442 6.415573 AGTAGTATGTTGAACCATCCTTTCC 58.584 40.000 0.00 0.00 0.00 3.13
2734 4443 4.600062 AGTATGTTGAACCATCCTTTCCC 58.400 43.478 0.00 0.00 0.00 3.97
2735 4444 3.541242 ATGTTGAACCATCCTTTCCCA 57.459 42.857 0.00 0.00 0.00 4.37
2736 4445 3.541242 TGTTGAACCATCCTTTCCCAT 57.459 42.857 0.00 0.00 0.00 4.00
2737 4446 3.164268 TGTTGAACCATCCTTTCCCATG 58.836 45.455 0.00 0.00 0.00 3.66
2738 4447 3.181424 TGTTGAACCATCCTTTCCCATGA 60.181 43.478 0.00 0.00 0.00 3.07
2739 4448 3.824001 TGAACCATCCTTTCCCATGAA 57.176 42.857 0.00 0.00 0.00 2.57
2740 4449 4.125124 TGAACCATCCTTTCCCATGAAA 57.875 40.909 0.00 0.00 38.14 2.69
2741 4450 4.487804 TGAACCATCCTTTCCCATGAAAA 58.512 39.130 0.00 0.00 39.88 2.29
2742 4451 5.092968 TGAACCATCCTTTCCCATGAAAAT 58.907 37.500 0.00 0.00 39.88 1.82
2743 4452 5.547276 TGAACCATCCTTTCCCATGAAAATT 59.453 36.000 0.00 0.00 39.88 1.82
2744 4453 6.728164 TGAACCATCCTTTCCCATGAAAATTA 59.272 34.615 0.00 0.00 39.88 1.40
2745 4454 6.796785 ACCATCCTTTCCCATGAAAATTAG 57.203 37.500 0.00 0.00 39.88 1.73
2746 4455 6.502138 ACCATCCTTTCCCATGAAAATTAGA 58.498 36.000 0.00 0.00 39.88 2.10
2747 4456 6.608808 ACCATCCTTTCCCATGAAAATTAGAG 59.391 38.462 0.00 0.00 39.88 2.43
2748 4457 6.835488 CCATCCTTTCCCATGAAAATTAGAGA 59.165 38.462 0.00 0.00 39.88 3.10
2749 4458 7.508296 CCATCCTTTCCCATGAAAATTAGAGAT 59.492 37.037 0.00 0.00 39.88 2.75
2750 4459 8.574737 CATCCTTTCCCATGAAAATTAGAGATC 58.425 37.037 0.00 0.00 39.88 2.75
2751 4460 7.642186 TCCTTTCCCATGAAAATTAGAGATCA 58.358 34.615 0.00 0.00 39.88 2.92
2752 4461 8.284435 TCCTTTCCCATGAAAATTAGAGATCAT 58.716 33.333 0.00 0.00 39.88 2.45
2753 4462 8.358148 CCTTTCCCATGAAAATTAGAGATCATG 58.642 37.037 7.45 7.45 45.47 3.07
2754 4463 8.827832 TTTCCCATGAAAATTAGAGATCATGT 57.172 30.769 12.13 0.00 44.79 3.21
2755 4464 7.812690 TCCCATGAAAATTAGAGATCATGTG 57.187 36.000 12.13 3.06 44.79 3.21
2756 4465 7.576403 TCCCATGAAAATTAGAGATCATGTGA 58.424 34.615 12.13 5.12 44.79 3.58
2757 4466 8.222637 TCCCATGAAAATTAGAGATCATGTGAT 58.777 33.333 12.13 0.00 44.79 3.06
2758 4467 8.297426 CCCATGAAAATTAGAGATCATGTGATG 58.703 37.037 12.13 0.00 44.79 3.07
2759 4468 8.297426 CCATGAAAATTAGAGATCATGTGATGG 58.703 37.037 12.13 0.00 44.79 3.51
2760 4469 9.063615 CATGAAAATTAGAGATCATGTGATGGA 57.936 33.333 0.00 0.00 42.53 3.41
2761 4470 8.442632 TGAAAATTAGAGATCATGTGATGGAC 57.557 34.615 0.00 0.00 34.37 4.02
2762 4471 8.270030 TGAAAATTAGAGATCATGTGATGGACT 58.730 33.333 0.00 0.48 34.37 3.85
2763 4472 8.674263 AAAATTAGAGATCATGTGATGGACTC 57.326 34.615 0.00 1.74 34.37 3.36
2764 4473 7.615039 AATTAGAGATCATGTGATGGACTCT 57.385 36.000 13.77 13.77 41.71 3.24
2765 4474 4.940905 AGAGATCATGTGATGGACTCTG 57.059 45.455 10.28 0.00 39.57 3.35
2766 4475 3.069872 AGAGATCATGTGATGGACTCTGC 59.930 47.826 10.28 0.00 39.57 4.26
2767 4476 3.039743 AGATCATGTGATGGACTCTGCT 58.960 45.455 0.00 0.00 34.37 4.24
2768 4477 4.221530 AGATCATGTGATGGACTCTGCTA 58.778 43.478 0.00 0.00 34.37 3.49
2769 4478 3.808466 TCATGTGATGGACTCTGCTAC 57.192 47.619 0.00 0.00 0.00 3.58
2770 4479 3.369175 TCATGTGATGGACTCTGCTACT 58.631 45.455 0.00 0.00 0.00 2.57
2771 4480 4.536765 TCATGTGATGGACTCTGCTACTA 58.463 43.478 0.00 0.00 0.00 1.82
2772 4481 4.956075 TCATGTGATGGACTCTGCTACTAA 59.044 41.667 0.00 0.00 0.00 2.24
2773 4482 5.422012 TCATGTGATGGACTCTGCTACTAAA 59.578 40.000 0.00 0.00 0.00 1.85
2774 4483 5.738619 TGTGATGGACTCTGCTACTAAAA 57.261 39.130 0.00 0.00 0.00 1.52
2775 4484 5.724328 TGTGATGGACTCTGCTACTAAAAG 58.276 41.667 0.00 0.00 0.00 2.27
2776 4485 4.568760 GTGATGGACTCTGCTACTAAAAGC 59.431 45.833 0.00 0.00 43.08 3.51
2807 4516 9.875675 GTAGTAATAACTGTCATACTCCTTACG 57.124 37.037 4.14 0.00 36.36 3.18
2808 4517 8.743085 AGTAATAACTGTCATACTCCTTACGA 57.257 34.615 0.00 0.00 33.57 3.43
2809 4518 9.182214 AGTAATAACTGTCATACTCCTTACGAA 57.818 33.333 0.00 0.00 33.57 3.85
2810 4519 9.962783 GTAATAACTGTCATACTCCTTACGAAT 57.037 33.333 0.00 0.00 0.00 3.34
2812 4521 9.886132 AATAACTGTCATACTCCTTACGAATTT 57.114 29.630 0.00 0.00 0.00 1.82
2813 4522 7.596749 AACTGTCATACTCCTTACGAATTTG 57.403 36.000 0.00 0.00 0.00 2.32
2814 4523 6.698380 ACTGTCATACTCCTTACGAATTTGT 58.302 36.000 3.29 3.29 0.00 2.83
2815 4524 7.833786 ACTGTCATACTCCTTACGAATTTGTA 58.166 34.615 1.08 1.08 0.00 2.41
2816 4525 7.974501 ACTGTCATACTCCTTACGAATTTGTAG 59.025 37.037 5.69 0.00 0.00 2.74
2817 4526 8.058667 TGTCATACTCCTTACGAATTTGTAGA 57.941 34.615 5.69 1.01 0.00 2.59
2818 4527 8.188799 TGTCATACTCCTTACGAATTTGTAGAG 58.811 37.037 15.67 15.67 0.00 2.43
2819 4528 7.648510 GTCATACTCCTTACGAATTTGTAGAGG 59.351 40.741 19.12 18.91 0.00 3.69
2820 4529 4.756502 ACTCCTTACGAATTTGTAGAGGC 58.243 43.478 19.12 0.00 0.00 4.70
2821 4530 4.222145 ACTCCTTACGAATTTGTAGAGGCA 59.778 41.667 19.12 12.07 0.00 4.75
2822 4531 4.501071 TCCTTACGAATTTGTAGAGGCAC 58.499 43.478 19.40 0.00 0.00 5.01
2823 4532 4.020928 TCCTTACGAATTTGTAGAGGCACA 60.021 41.667 19.40 8.33 0.00 4.57
2824 4533 4.693566 CCTTACGAATTTGTAGAGGCACAA 59.306 41.667 15.40 0.00 36.65 3.33
2825 4534 5.390567 CCTTACGAATTTGTAGAGGCACAAC 60.391 44.000 15.40 0.00 38.12 3.32
2826 4535 2.812011 ACGAATTTGTAGAGGCACAACC 59.188 45.455 0.00 0.00 38.12 3.77
2839 4548 3.900941 GGCACAACCTGAACTTTGTATG 58.099 45.455 0.00 0.00 34.12 2.39
2840 4549 3.568007 GGCACAACCTGAACTTTGTATGA 59.432 43.478 0.00 0.00 34.12 2.15
2841 4550 4.218417 GGCACAACCTGAACTTTGTATGAT 59.782 41.667 0.00 0.00 34.12 2.45
2842 4551 5.156355 GCACAACCTGAACTTTGTATGATG 58.844 41.667 0.00 0.00 34.12 3.07
2843 4552 5.048782 GCACAACCTGAACTTTGTATGATGA 60.049 40.000 0.00 0.00 34.12 2.92
2844 4553 6.514870 GCACAACCTGAACTTTGTATGATGAA 60.515 38.462 0.00 0.00 34.12 2.57
2845 4554 7.424803 CACAACCTGAACTTTGTATGATGAAA 58.575 34.615 0.00 0.00 34.12 2.69
2846 4555 7.592533 CACAACCTGAACTTTGTATGATGAAAG 59.407 37.037 0.00 0.00 34.12 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 187 4.202284 GCAATTCCAGATTGCCCATAACAT 60.202 41.667 11.59 0.00 46.21 2.71
247 253 3.012518 GCTCTGAAGATAGCCTGCAAAA 58.987 45.455 0.00 0.00 32.40 2.44
256 262 1.135915 ACGCAGTGGCTCTGAAGATAG 59.864 52.381 19.98 6.04 46.27 2.08
450 458 5.047590 TCACGGAGAGCAAAACAATAGTAGA 60.048 40.000 0.00 0.00 0.00 2.59
490 504 1.889829 AGTCTCCAGGTCTCGAACAAG 59.110 52.381 0.00 0.00 0.00 3.16
492 506 1.613925 CAAGTCTCCAGGTCTCGAACA 59.386 52.381 0.00 0.00 0.00 3.18
493 507 1.067495 CCAAGTCTCCAGGTCTCGAAC 60.067 57.143 0.00 0.00 0.00 3.95
494 508 1.203013 TCCAAGTCTCCAGGTCTCGAA 60.203 52.381 0.00 0.00 0.00 3.71
495 509 0.404426 TCCAAGTCTCCAGGTCTCGA 59.596 55.000 0.00 0.00 0.00 4.04
496 510 0.814457 CTCCAAGTCTCCAGGTCTCG 59.186 60.000 0.00 0.00 0.00 4.04
497 511 1.822371 GTCTCCAAGTCTCCAGGTCTC 59.178 57.143 0.00 0.00 0.00 3.36
498 512 1.431243 AGTCTCCAAGTCTCCAGGTCT 59.569 52.381 0.00 0.00 0.00 3.85
499 513 1.931635 AGTCTCCAAGTCTCCAGGTC 58.068 55.000 0.00 0.00 0.00 3.85
500 514 1.974236 CAAGTCTCCAAGTCTCCAGGT 59.026 52.381 0.00 0.00 0.00 4.00
501 515 1.974236 ACAAGTCTCCAAGTCTCCAGG 59.026 52.381 0.00 0.00 0.00 4.45
502 516 2.366916 ACACAAGTCTCCAAGTCTCCAG 59.633 50.000 0.00 0.00 0.00 3.86
607 621 3.406595 AAGCCCCTAGCCGCACATC 62.407 63.158 0.00 0.00 45.47 3.06
625 639 6.797540 ACAGGGATAATTAGGTGATAATGGGA 59.202 38.462 0.00 0.00 34.21 4.37
631 645 8.808240 AGGTTTACAGGGATAATTAGGTGATA 57.192 34.615 0.00 0.00 0.00 2.15
661 675 8.512138 GCAGTAAACCACACTTTATTAGATTGT 58.488 33.333 0.00 0.00 0.00 2.71
724 739 5.858381 TGTGTAGCAAAGAGAAATCTCAGT 58.142 37.500 12.65 0.00 45.21 3.41
729 744 5.909610 GTGTGTTGTGTAGCAAAGAGAAATC 59.090 40.000 0.00 0.00 39.03 2.17
736 751 3.126858 ACTGTGTGTGTTGTGTAGCAAAG 59.873 43.478 0.00 0.00 39.03 2.77
776 793 4.532126 TGAAGAAATCCTCAGAACCTAGCA 59.468 41.667 0.00 0.00 0.00 3.49
793 810 3.547214 GCGTCATTCGGTTGTTTGAAGAA 60.547 43.478 0.00 0.00 40.26 2.52
906 931 5.476983 TCACTAATGGATAAGGAGGGTCAT 58.523 41.667 0.00 0.00 0.00 3.06
931 956 4.789075 GAAGGCGCCGCGTCACTA 62.789 66.667 23.20 0.00 32.13 2.74
967 992 1.544825 CCTTGCCTCCTCTCGGTCAA 61.545 60.000 0.00 0.00 0.00 3.18
1113 1147 1.598130 GACGTTCTTGGTGCTGGCT 60.598 57.895 0.00 0.00 0.00 4.75
1118 1152 1.282930 GAGGACGACGTTCTTGGTGC 61.283 60.000 10.81 0.00 0.00 5.01
1121 1155 4.573162 GGAGGACGACGTTCTTGG 57.427 61.111 10.81 0.00 0.00 3.61
1388 1422 2.125326 TGCAGCCCGCGACTACTAT 61.125 57.895 8.23 0.00 46.97 2.12
1844 1880 2.958355 TGCATAGGTCGATCATGACTCA 59.042 45.455 0.00 0.00 38.91 3.41
1845 1881 3.650070 TGCATAGGTCGATCATGACTC 57.350 47.619 0.00 0.00 38.91 3.36
1846 1882 3.831333 AGATGCATAGGTCGATCATGACT 59.169 43.478 0.00 0.00 38.91 3.41
1847 1883 4.185467 AGATGCATAGGTCGATCATGAC 57.815 45.455 0.00 0.00 38.17 3.06
1848 1884 5.420104 ACATAGATGCATAGGTCGATCATGA 59.580 40.000 0.00 0.00 0.00 3.07
1849 1885 5.658468 ACATAGATGCATAGGTCGATCATG 58.342 41.667 0.00 1.04 0.00 3.07
1850 1886 5.929058 ACATAGATGCATAGGTCGATCAT 57.071 39.130 0.00 0.00 0.00 2.45
2012 2056 9.860898 TCGTATATACATACACGTACTAGTGAT 57.139 33.333 13.22 0.00 44.43 3.06
2013 2057 9.691362 TTCGTATATACATACACGTACTAGTGA 57.309 33.333 13.22 0.00 44.43 3.41
2019 2063 8.993852 AGTGTTTCGTATATACATACACGTAC 57.006 34.615 22.85 11.89 37.47 3.67
2021 2065 8.915871 AAAGTGTTTCGTATATACATACACGT 57.084 30.769 22.85 20.00 37.47 4.49
2030 2074 9.723601 AAAACCTGGTAAAGTGTTTCGTATATA 57.276 29.630 0.00 0.00 31.83 0.86
2072 2116 2.680913 GCACACTCGCAATCGGCTT 61.681 57.895 0.00 0.00 41.67 4.35
2084 2135 1.724582 GAAAACCCACTGCGCACACT 61.725 55.000 5.66 0.00 0.00 3.55
2088 2139 2.192861 CCAGAAAACCCACTGCGCA 61.193 57.895 10.98 10.98 33.40 6.09
2099 2150 6.303839 AGCAACTTCCAGTATTACCAGAAAA 58.696 36.000 0.00 0.00 0.00 2.29
2103 2154 6.575162 AAAAGCAACTTCCAGTATTACCAG 57.425 37.500 0.00 0.00 0.00 4.00
2119 2170 1.684450 GACGGGAAAGGGAAAAAGCAA 59.316 47.619 0.00 0.00 0.00 3.91
2138 2189 1.502690 AACATACATAGGGTGCGGGA 58.497 50.000 0.00 0.00 0.00 5.14
2139 2190 2.341846 AAACATACATAGGGTGCGGG 57.658 50.000 0.00 0.00 0.00 6.13
2142 2193 2.757868 TGGCAAAACATACATAGGGTGC 59.242 45.455 0.00 0.00 0.00 5.01
2143 2194 5.047377 AGTTTGGCAAAACATACATAGGGTG 60.047 40.000 18.82 0.00 46.80 4.61
2144 2195 5.047377 CAGTTTGGCAAAACATACATAGGGT 60.047 40.000 18.82 0.00 46.80 4.34
2145 2196 5.047377 ACAGTTTGGCAAAACATACATAGGG 60.047 40.000 18.82 0.00 46.80 3.53
2146 2197 6.024552 ACAGTTTGGCAAAACATACATAGG 57.975 37.500 18.82 0.91 46.80 2.57
2147 2198 6.922957 ACAACAGTTTGGCAAAACATACATAG 59.077 34.615 18.82 4.59 46.80 2.23
2219 2275 8.757164 CCTTTTGGGTGTTGTATAATCTTTTC 57.243 34.615 0.00 0.00 35.46 2.29
2239 3934 6.279813 TCTGATTGATTATAGCCCCCTTTT 57.720 37.500 0.00 0.00 0.00 2.27
2267 3962 7.249147 GCTAAGTTCACGAGAGACACTAAATA 58.751 38.462 0.00 0.00 0.00 1.40
2282 3977 3.682858 TGAAACATAGCGGCTAAGTTCAC 59.317 43.478 25.31 21.58 28.51 3.18
2294 3989 2.223340 CGCCCAAGTGATGAAACATAGC 60.223 50.000 0.00 0.00 0.00 2.97
2407 4106 0.036875 CCTCTGACCCACCAAACTCC 59.963 60.000 0.00 0.00 0.00 3.85
2421 4120 4.656112 ACCAAGATAAGACCCATACCTCTG 59.344 45.833 0.00 0.00 0.00 3.35
2463 4172 3.288964 CTTCTCCGGTCACTAGTATGGT 58.711 50.000 0.00 0.00 0.00 3.55
2486 4195 1.261619 CGAGATTTAACGGGCATCAGC 59.738 52.381 0.00 0.00 41.10 4.26
2488 4197 2.684001 ACGAGATTTAACGGGCATCA 57.316 45.000 0.00 0.00 0.00 3.07
2497 4206 8.679100 CCCAAATAACCATGTAACGAGATTTAA 58.321 33.333 0.00 0.00 0.00 1.52
2573 4282 0.325933 TGACCTTGCCCACAGATCAG 59.674 55.000 0.00 0.00 0.00 2.90
2605 4314 2.147958 TCGCAAACAAGATGTACCACC 58.852 47.619 0.00 0.00 0.00 4.61
2611 4320 8.231304 CATCTTTAAATTCGCAAACAAGATGT 57.769 30.769 9.77 0.00 40.25 3.06
2655 4364 6.347563 GCTCACACAGATTTCTTTCTCAGAAG 60.348 42.308 0.00 0.00 42.76 2.85
2657 4366 4.993584 GCTCACACAGATTTCTTTCTCAGA 59.006 41.667 0.00 0.00 0.00 3.27
2658 4367 4.753610 TGCTCACACAGATTTCTTTCTCAG 59.246 41.667 0.00 0.00 0.00 3.35
2700 4409 2.159240 TCAACATACTACTCGGCAGCAG 60.159 50.000 0.00 0.00 0.00 4.24
2713 4422 4.340617 TGGGAAAGGATGGTTCAACATAC 58.659 43.478 0.00 0.00 31.58 2.39
2714 4423 4.666412 TGGGAAAGGATGGTTCAACATA 57.334 40.909 0.00 0.00 0.00 2.29
2715 4424 3.541242 TGGGAAAGGATGGTTCAACAT 57.459 42.857 0.00 0.00 0.00 2.71
2716 4425 3.164268 CATGGGAAAGGATGGTTCAACA 58.836 45.455 0.00 0.00 0.00 3.33
2717 4426 3.430453 TCATGGGAAAGGATGGTTCAAC 58.570 45.455 0.00 0.00 0.00 3.18
2718 4427 3.824001 TCATGGGAAAGGATGGTTCAA 57.176 42.857 0.00 0.00 0.00 2.69
2719 4428 3.824001 TTCATGGGAAAGGATGGTTCA 57.176 42.857 0.00 0.00 0.00 3.18
2720 4429 5.682234 ATTTTCATGGGAAAGGATGGTTC 57.318 39.130 0.00 0.00 43.47 3.62
2721 4430 6.959366 TCTAATTTTCATGGGAAAGGATGGTT 59.041 34.615 0.00 0.00 43.47 3.67
2722 4431 6.502138 TCTAATTTTCATGGGAAAGGATGGT 58.498 36.000 0.00 0.00 43.47 3.55
2723 4432 6.835488 TCTCTAATTTTCATGGGAAAGGATGG 59.165 38.462 0.00 0.00 43.47 3.51
2724 4433 7.886629 TCTCTAATTTTCATGGGAAAGGATG 57.113 36.000 0.00 0.00 43.47 3.51
2725 4434 8.284435 TGATCTCTAATTTTCATGGGAAAGGAT 58.716 33.333 0.00 0.00 43.47 3.24
2726 4435 7.642186 TGATCTCTAATTTTCATGGGAAAGGA 58.358 34.615 0.00 0.00 43.47 3.36
2727 4436 7.886629 TGATCTCTAATTTTCATGGGAAAGG 57.113 36.000 0.00 0.00 43.47 3.11
2728 4437 8.910944 ACATGATCTCTAATTTTCATGGGAAAG 58.089 33.333 14.23 0.00 46.16 2.62
2729 4438 8.827832 ACATGATCTCTAATTTTCATGGGAAA 57.172 30.769 14.23 0.00 46.16 3.13
2732 4441 7.812690 TCACATGATCTCTAATTTTCATGGG 57.187 36.000 14.23 11.07 46.54 4.00
2733 4442 8.297426 CCATCACATGATCTCTAATTTTCATGG 58.703 37.037 14.23 5.67 46.16 3.66
2734 4443 9.063615 TCCATCACATGATCTCTAATTTTCATG 57.936 33.333 0.00 9.54 46.88 3.07
2735 4444 9.064706 GTCCATCACATGATCTCTAATTTTCAT 57.935 33.333 0.00 0.00 31.21 2.57
2736 4445 8.270030 AGTCCATCACATGATCTCTAATTTTCA 58.730 33.333 0.00 0.00 31.21 2.69
2737 4446 8.674263 AGTCCATCACATGATCTCTAATTTTC 57.326 34.615 0.00 0.00 31.21 2.29
2738 4447 8.492782 AGAGTCCATCACATGATCTCTAATTTT 58.507 33.333 0.00 0.00 37.88 1.82
2739 4448 7.932491 CAGAGTCCATCACATGATCTCTAATTT 59.068 37.037 0.00 0.00 37.72 1.82
2740 4449 7.443477 CAGAGTCCATCACATGATCTCTAATT 58.557 38.462 0.00 0.00 37.72 1.40
2741 4450 6.518706 GCAGAGTCCATCACATGATCTCTAAT 60.519 42.308 0.00 0.00 37.72 1.73
2742 4451 5.221402 GCAGAGTCCATCACATGATCTCTAA 60.221 44.000 0.00 0.00 37.72 2.10
2743 4452 4.280425 GCAGAGTCCATCACATGATCTCTA 59.720 45.833 0.00 0.00 37.72 2.43
2744 4453 3.069872 GCAGAGTCCATCACATGATCTCT 59.930 47.826 0.00 5.98 39.09 3.10
2745 4454 3.069872 AGCAGAGTCCATCACATGATCTC 59.930 47.826 0.00 0.00 31.21 2.75
2746 4455 3.039743 AGCAGAGTCCATCACATGATCT 58.960 45.455 0.00 0.00 31.21 2.75
2747 4456 3.472283 AGCAGAGTCCATCACATGATC 57.528 47.619 0.00 0.00 31.21 2.92
2748 4457 3.966006 AGTAGCAGAGTCCATCACATGAT 59.034 43.478 0.00 0.00 34.56 2.45
2749 4458 3.369175 AGTAGCAGAGTCCATCACATGA 58.631 45.455 0.00 0.00 0.00 3.07
2750 4459 3.815856 AGTAGCAGAGTCCATCACATG 57.184 47.619 0.00 0.00 0.00 3.21
2751 4460 5.939764 TTTAGTAGCAGAGTCCATCACAT 57.060 39.130 0.00 0.00 0.00 3.21
2752 4461 5.724328 CTTTTAGTAGCAGAGTCCATCACA 58.276 41.667 0.00 0.00 0.00 3.58
2753 4462 4.568760 GCTTTTAGTAGCAGAGTCCATCAC 59.431 45.833 0.00 0.00 40.89 3.06
2754 4463 4.222810 TGCTTTTAGTAGCAGAGTCCATCA 59.777 41.667 0.00 0.00 45.72 3.07
2755 4464 4.759782 TGCTTTTAGTAGCAGAGTCCATC 58.240 43.478 0.00 0.00 45.72 3.51
2756 4465 4.826274 TGCTTTTAGTAGCAGAGTCCAT 57.174 40.909 0.00 0.00 45.72 3.41
2781 4490 9.875675 CGTAAGGAGTATGACAGTTATTACTAC 57.124 37.037 0.00 0.00 31.96 2.73
2782 4491 9.836864 TCGTAAGGAGTATGACAGTTATTACTA 57.163 33.333 0.00 0.00 38.47 1.82
2783 4492 8.743085 TCGTAAGGAGTATGACAGTTATTACT 57.257 34.615 0.00 0.00 38.47 2.24
2784 4493 9.962783 ATTCGTAAGGAGTATGACAGTTATTAC 57.037 33.333 0.00 0.00 38.47 1.89
2786 4495 9.886132 AAATTCGTAAGGAGTATGACAGTTATT 57.114 29.630 0.00 0.00 38.47 1.40
2787 4496 9.314321 CAAATTCGTAAGGAGTATGACAGTTAT 57.686 33.333 0.00 0.00 38.47 1.89
2788 4497 8.308931 ACAAATTCGTAAGGAGTATGACAGTTA 58.691 33.333 0.00 0.00 38.47 2.24
2789 4498 7.159372 ACAAATTCGTAAGGAGTATGACAGTT 58.841 34.615 0.00 0.00 38.47 3.16
2790 4499 6.698380 ACAAATTCGTAAGGAGTATGACAGT 58.302 36.000 0.00 0.00 38.47 3.55
2791 4500 8.188799 TCTACAAATTCGTAAGGAGTATGACAG 58.811 37.037 0.00 0.00 38.47 3.51
2792 4501 8.058667 TCTACAAATTCGTAAGGAGTATGACA 57.941 34.615 0.00 0.00 38.47 3.58
2793 4502 7.648510 CCTCTACAAATTCGTAAGGAGTATGAC 59.351 40.741 0.88 0.00 38.47 3.06
2794 4503 7.683704 GCCTCTACAAATTCGTAAGGAGTATGA 60.684 40.741 8.22 0.00 38.47 2.15
2795 4504 6.421202 GCCTCTACAAATTCGTAAGGAGTATG 59.579 42.308 8.22 0.00 38.47 2.39
2796 4505 6.097839 TGCCTCTACAAATTCGTAAGGAGTAT 59.902 38.462 8.22 0.00 38.47 2.12
2797 4506 5.419788 TGCCTCTACAAATTCGTAAGGAGTA 59.580 40.000 8.22 0.00 38.47 2.59
2798 4507 4.222145 TGCCTCTACAAATTCGTAAGGAGT 59.778 41.667 8.22 0.00 38.47 3.85
2799 4508 4.567159 GTGCCTCTACAAATTCGTAAGGAG 59.433 45.833 8.22 0.00 38.47 3.69
2800 4509 4.020928 TGTGCCTCTACAAATTCGTAAGGA 60.021 41.667 8.22 0.00 38.47 3.36
2801 4510 4.250464 TGTGCCTCTACAAATTCGTAAGG 58.750 43.478 2.26 2.26 38.47 2.69
2802 4511 5.390567 GGTTGTGCCTCTACAAATTCGTAAG 60.391 44.000 0.00 0.00 41.75 2.34
2803 4512 4.453136 GGTTGTGCCTCTACAAATTCGTAA 59.547 41.667 0.00 0.00 41.75 3.18
2804 4513 3.998341 GGTTGTGCCTCTACAAATTCGTA 59.002 43.478 0.00 0.00 41.75 3.43
2805 4514 2.812011 GGTTGTGCCTCTACAAATTCGT 59.188 45.455 0.00 0.00 41.75 3.85
2806 4515 3.074412 AGGTTGTGCCTCTACAAATTCG 58.926 45.455 0.00 0.00 46.96 3.34
2807 4516 4.072131 TCAGGTTGTGCCTCTACAAATTC 58.928 43.478 0.00 0.00 46.96 2.17
2808 4517 4.098914 TCAGGTTGTGCCTCTACAAATT 57.901 40.909 0.00 0.00 46.96 1.82
2809 4518 3.788227 TCAGGTTGTGCCTCTACAAAT 57.212 42.857 0.00 0.00 46.96 2.32
2810 4519 3.118038 AGTTCAGGTTGTGCCTCTACAAA 60.118 43.478 0.00 0.00 46.96 2.83
2811 4520 2.438021 AGTTCAGGTTGTGCCTCTACAA 59.562 45.455 0.00 0.00 46.96 2.41
2812 4521 2.047061 AGTTCAGGTTGTGCCTCTACA 58.953 47.619 0.00 0.00 46.96 2.74
2813 4522 2.841442 AGTTCAGGTTGTGCCTCTAC 57.159 50.000 0.00 0.00 46.96 2.59
2814 4523 3.118038 ACAAAGTTCAGGTTGTGCCTCTA 60.118 43.478 0.00 0.00 46.96 2.43
2815 4524 2.301346 CAAAGTTCAGGTTGTGCCTCT 58.699 47.619 0.00 0.00 46.96 3.69
2816 4525 2.024414 ACAAAGTTCAGGTTGTGCCTC 58.976 47.619 0.00 0.00 46.96 4.70
2818 4527 3.568007 TCATACAAAGTTCAGGTTGTGCC 59.432 43.478 0.00 0.00 38.40 5.01
2819 4528 4.829064 TCATACAAAGTTCAGGTTGTGC 57.171 40.909 0.00 0.00 38.40 4.57
2820 4529 6.558771 TCATCATACAAAGTTCAGGTTGTG 57.441 37.500 0.00 0.00 38.40 3.33
2821 4530 7.581213 TTTCATCATACAAAGTTCAGGTTGT 57.419 32.000 0.00 0.00 40.88 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.