Multiple sequence alignment - TraesCS7D01G471600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G471600 chr7D 100.000 3991 0 0 1 3991 585300022 585304012 0.000000e+00 7371.0
1 TraesCS7D01G471600 chr5D 94.085 727 41 2 3263 3989 532654846 532655570 0.000000e+00 1103.0
2 TraesCS7D01G471600 chr7A 93.931 725 41 3 3263 3986 675396510 675397232 0.000000e+00 1092.0
3 TraesCS7D01G471600 chr7A 87.752 694 54 17 2541 3205 675395825 675396516 0.000000e+00 782.0
4 TraesCS7D01G471600 chr7A 88.720 656 51 8 21 660 675391954 675392602 0.000000e+00 780.0
5 TraesCS7D01G471600 chr7A 85.830 741 81 16 1623 2345 675395028 675395762 0.000000e+00 765.0
6 TraesCS7D01G471600 chr7A 87.477 543 41 19 896 1433 675394249 675394769 5.710000e-168 601.0
7 TraesCS7D01G471600 chr7A 94.737 38 1 1 820 856 675394192 675394229 1.550000e-04 58.4
8 TraesCS7D01G471600 chr7B 93.004 729 24 5 3263 3991 653894971 653895672 0.000000e+00 1038.0
9 TraesCS7D01G471600 chr7B 89.365 677 51 6 37 696 653891569 653892241 0.000000e+00 832.0
10 TraesCS7D01G471600 chr7B 87.518 697 53 12 2540 3205 653894284 653894977 0.000000e+00 774.0
11 TraesCS7D01G471600 chr7B 87.676 641 59 12 1599 2222 653893544 653894181 0.000000e+00 728.0
12 TraesCS7D01G471600 chr7B 85.484 620 26 24 834 1433 653892753 653893328 4.440000e-164 588.0
13 TraesCS7D01G471600 chr5B 94.118 34 2 0 271 304 545872878 545872845 7.000000e-03 52.8
14 TraesCS7D01G471600 chr5B 94.118 34 2 0 271 304 545895458 545895425 7.000000e-03 52.8
15 TraesCS7D01G471600 chr5B 94.118 34 2 0 271 304 546116463 546116430 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G471600 chr7D 585300022 585304012 3990 False 7371.000000 7371 100.000000 1 3991 1 chr7D.!!$F1 3990
1 TraesCS7D01G471600 chr5D 532654846 532655570 724 False 1103.000000 1103 94.085000 3263 3989 1 chr5D.!!$F1 726
2 TraesCS7D01G471600 chr7A 675391954 675397232 5278 False 679.733333 1092 89.741167 21 3986 6 chr7A.!!$F1 3965
3 TraesCS7D01G471600 chr7B 653891569 653895672 4103 False 792.000000 1038 88.609400 37 3991 5 chr7B.!!$F1 3954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 217 0.616891 AACTCCCGGTATCCACCAAC 59.383 55.000 0.0 0.0 46.14 3.77 F
1736 3333 1.000283 CTGTCGTCACTCCAAAGCTCT 60.000 52.381 0.0 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1769 3366 0.617535 ACATCCACACGGGGAGATCA 60.618 55.0 0.0 0.0 41.08 2.92 R
3622 5268 0.106918 TGTCGTTTGCCTCCCTGTTT 60.107 50.0 0.0 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.672342 GCTATGATGGCAAGGCAAGG 59.328 55.000 0.00 0.00 0.00 3.61
38 39 3.669344 AACCACATGCAACGCCCG 61.669 61.111 0.00 0.00 0.00 6.13
71 72 3.090219 GCCGGCGAGGTAATCCTGT 62.090 63.158 12.58 0.00 45.24 4.00
80 81 3.673594 CGAGGTAATCCTGTGACACTGTC 60.674 52.174 7.20 1.86 45.24 3.51
81 82 3.511477 AGGTAATCCTGTGACACTGTCT 58.489 45.455 10.54 0.00 43.33 3.41
95 96 1.340502 ACTGTCTGCCAGATCGAGAGA 60.341 52.381 0.00 0.00 44.49 3.10
163 188 0.674581 CAGCTCGGACTGCAAATGGA 60.675 55.000 0.00 0.00 0.00 3.41
172 197 3.406764 GACTGCAAATGGACTGAGAACT 58.593 45.455 0.00 0.00 0.00 3.01
173 198 3.406764 ACTGCAAATGGACTGAGAACTC 58.593 45.455 0.00 0.00 0.00 3.01
187 216 0.906775 GAACTCCCGGTATCCACCAA 59.093 55.000 0.00 0.00 46.14 3.67
188 217 0.616891 AACTCCCGGTATCCACCAAC 59.383 55.000 0.00 0.00 46.14 3.77
210 239 7.428826 CAACTTTGAGGCTTTATCTTGACTTT 58.571 34.615 0.00 0.00 0.00 2.66
212 241 6.772716 ACTTTGAGGCTTTATCTTGACTTTGA 59.227 34.615 0.00 0.00 0.00 2.69
239 268 5.934625 GTCAGTCCAGAACAATTGTCTATGT 59.065 40.000 12.39 0.00 0.00 2.29
250 279 9.169468 GAACAATTGTCTATGTGTAGTTGTTTG 57.831 33.333 12.39 0.00 35.39 2.93
377 406 7.308229 GGGATGATCACATTAGAATTGCAGTAC 60.308 40.741 0.00 0.00 36.82 2.73
409 438 3.603532 TGCTCTTGCTTATCTCCACTTG 58.396 45.455 0.00 0.00 40.48 3.16
510 540 9.547753 GTATCTGATTTGGTGCTTTAAGATCTA 57.452 33.333 0.00 0.00 0.00 1.98
558 589 4.570369 CGACAATTGTACATGCATGGTAGA 59.430 41.667 29.41 14.98 0.00 2.59
575 606 7.011482 GCATGGTAGAATTGGTTACTTAGACAG 59.989 40.741 0.00 0.00 0.00 3.51
629 661 8.026607 TGTTTATAGTTTTGGAGTTATGCTTGC 58.973 33.333 0.00 0.00 0.00 4.01
655 687 3.758554 GCTTCTCATTAGAAACAGGCCAA 59.241 43.478 5.01 0.00 41.19 4.52
660 692 8.415950 TTCTCATTAGAAACAGGCCAATTTTA 57.584 30.769 5.01 0.00 38.81 1.52
700 767 3.091545 GTGGAAGCATTTCATCAGGGAA 58.908 45.455 0.00 0.00 34.90 3.97
712 779 1.573108 TCAGGGAACTCTCATGGGAC 58.427 55.000 0.00 0.00 40.21 4.46
726 793 4.570926 TCATGGGACTTAGGGATTCTCAT 58.429 43.478 0.00 0.00 28.80 2.90
728 795 3.048600 TGGGACTTAGGGATTCTCATGG 58.951 50.000 0.00 0.00 0.00 3.66
729 796 3.311327 TGGGACTTAGGGATTCTCATGGA 60.311 47.826 0.00 0.00 0.00 3.41
731 798 4.019771 GGGACTTAGGGATTCTCATGGATC 60.020 50.000 0.00 0.00 0.00 3.36
735 802 2.255406 AGGGATTCTCATGGATCGGAG 58.745 52.381 0.00 2.26 0.00 4.63
736 803 1.338579 GGGATTCTCATGGATCGGAGC 60.339 57.143 0.00 0.00 0.00 4.70
773 2230 2.603473 CCCACTCCACCACGAGGA 60.603 66.667 5.68 0.00 38.69 3.71
789 2246 3.798511 GAGGCCCCGGGAAGGAAG 61.799 72.222 26.32 4.58 45.00 3.46
790 2247 4.677151 AGGCCCCGGGAAGGAAGT 62.677 66.667 26.32 0.00 45.00 3.01
822 2295 2.193248 GGAAGAGGAATGGGGCGG 59.807 66.667 0.00 0.00 0.00 6.13
823 2296 2.680370 GGAAGAGGAATGGGGCGGT 61.680 63.158 0.00 0.00 0.00 5.68
909 2395 4.760047 CCCTGGAGAACGTGCGGG 62.760 72.222 0.00 0.00 42.89 6.13
1133 2641 2.896443 CAGAAGCGTCCTCCTCCC 59.104 66.667 0.00 0.00 0.00 4.30
1135 2643 2.683933 GAAGCGTCCTCCTCCCCA 60.684 66.667 0.00 0.00 0.00 4.96
1136 2644 2.203938 AAGCGTCCTCCTCCCCAA 60.204 61.111 0.00 0.00 0.00 4.12
1427 2941 3.730715 GCTTCCACGAGTTGTTTGATTTG 59.269 43.478 0.00 0.00 0.00 2.32
1429 2943 3.283751 TCCACGAGTTGTTTGATTTGGT 58.716 40.909 0.00 0.00 0.00 3.67
1430 2944 3.066064 TCCACGAGTTGTTTGATTTGGTG 59.934 43.478 0.00 0.00 0.00 4.17
1431 2945 3.181491 CCACGAGTTGTTTGATTTGGTGT 60.181 43.478 0.00 0.00 0.00 4.16
1432 2946 4.035017 CACGAGTTGTTTGATTTGGTGTC 58.965 43.478 0.00 0.00 0.00 3.67
1433 2947 3.692101 ACGAGTTGTTTGATTTGGTGTCA 59.308 39.130 0.00 0.00 0.00 3.58
1434 2948 4.338118 ACGAGTTGTTTGATTTGGTGTCAT 59.662 37.500 0.00 0.00 0.00 3.06
1438 2952 6.205784 AGTTGTTTGATTTGGTGTCATTACG 58.794 36.000 0.00 0.00 0.00 3.18
1439 2953 6.038825 AGTTGTTTGATTTGGTGTCATTACGA 59.961 34.615 0.00 0.00 0.00 3.43
1440 2954 5.996219 TGTTTGATTTGGTGTCATTACGAG 58.004 37.500 0.00 0.00 0.00 4.18
1441 2955 5.760743 TGTTTGATTTGGTGTCATTACGAGA 59.239 36.000 0.00 0.00 0.00 4.04
1442 2956 5.856126 TTGATTTGGTGTCATTACGAGAC 57.144 39.130 0.00 0.00 37.18 3.36
1452 3012 3.799420 GTCATTACGAGACCTGAAGCATC 59.201 47.826 0.00 0.00 0.00 3.91
1456 3016 1.219124 GAGACCTGAAGCATCGGCA 59.781 57.895 0.00 0.00 44.61 5.69
1457 3017 1.078848 AGACCTGAAGCATCGGCAC 60.079 57.895 0.00 0.00 44.61 5.01
1458 3018 1.375908 GACCTGAAGCATCGGCACA 60.376 57.895 0.00 0.00 44.61 4.57
1466 3026 2.401583 AGCATCGGCACACTGAATTA 57.598 45.000 0.00 0.00 44.61 1.40
1483 3043 8.400947 CACTGAATTATGTAGAGTTTGGATTGG 58.599 37.037 0.00 0.00 0.00 3.16
1487 3047 6.590656 TTATGTAGAGTTTGGATTGGGGAT 57.409 37.500 0.00 0.00 0.00 3.85
1489 3049 5.367945 TGTAGAGTTTGGATTGGGGATAC 57.632 43.478 0.00 0.00 0.00 2.24
1495 3055 3.616343 TTGGATTGGGGATACATGCAT 57.384 42.857 0.00 0.00 39.74 3.96
1499 3059 3.642848 GGATTGGGGATACATGCATTGTT 59.357 43.478 0.00 0.00 39.87 2.83
1500 3060 4.501915 GGATTGGGGATACATGCATTGTTG 60.502 45.833 0.00 0.00 39.87 3.33
1518 3085 6.500684 TTGTTGAATGCTGGAGTAGATTTC 57.499 37.500 0.00 0.00 0.00 2.17
1519 3086 4.631377 TGTTGAATGCTGGAGTAGATTTCG 59.369 41.667 0.00 0.00 0.00 3.46
1522 3089 3.550437 ATGCTGGAGTAGATTTCGCTT 57.450 42.857 0.00 0.00 0.00 4.68
1524 3091 2.497675 TGCTGGAGTAGATTTCGCTTCT 59.502 45.455 0.00 0.00 0.00 2.85
1525 3092 2.863137 GCTGGAGTAGATTTCGCTTCTG 59.137 50.000 0.00 0.00 0.00 3.02
1526 3093 2.863137 CTGGAGTAGATTTCGCTTCTGC 59.137 50.000 0.00 0.00 0.00 4.26
1527 3094 2.205911 GGAGTAGATTTCGCTTCTGCC 58.794 52.381 0.00 0.00 35.36 4.85
1528 3095 2.418746 GGAGTAGATTTCGCTTCTGCCA 60.419 50.000 0.00 0.00 35.36 4.92
1529 3096 2.863137 GAGTAGATTTCGCTTCTGCCAG 59.137 50.000 0.00 0.00 35.36 4.85
1530 3097 2.497675 AGTAGATTTCGCTTCTGCCAGA 59.502 45.455 0.00 0.00 35.36 3.86
1531 3098 1.731720 AGATTTCGCTTCTGCCAGAC 58.268 50.000 0.00 0.00 35.36 3.51
1532 3099 1.277557 AGATTTCGCTTCTGCCAGACT 59.722 47.619 0.00 0.00 35.36 3.24
1533 3100 1.396301 GATTTCGCTTCTGCCAGACTG 59.604 52.381 0.00 0.00 35.36 3.51
1534 3101 1.230635 TTTCGCTTCTGCCAGACTGC 61.231 55.000 0.00 1.05 35.36 4.40
1544 3111 1.761784 TGCCAGACTGCCACAAATTTT 59.238 42.857 0.00 0.00 0.00 1.82
1549 3116 3.246699 CAGACTGCCACAAATTTTTGCTG 59.753 43.478 3.00 4.27 41.79 4.41
1568 3135 4.633126 TGCTGCTAGATTAGTTTGCTTCAG 59.367 41.667 0.00 0.00 0.00 3.02
1576 3143 9.604626 CTAGATTAGTTTGCTTCAGTTCAAAAG 57.395 33.333 0.00 0.00 34.44 2.27
1578 3145 4.725790 AGTTTGCTTCAGTTCAAAAGCT 57.274 36.364 8.38 0.00 46.34 3.74
1580 3147 2.497107 TGCTTCAGTTCAAAAGCTGC 57.503 45.000 8.38 0.00 46.34 5.25
1583 3150 2.480073 GCTTCAGTTCAAAAGCTGCACA 60.480 45.455 1.02 0.00 43.57 4.57
1585 3152 4.557296 GCTTCAGTTCAAAAGCTGCACATA 60.557 41.667 1.02 0.00 43.57 2.29
1586 3153 5.706916 CTTCAGTTCAAAAGCTGCACATAT 58.293 37.500 1.02 0.00 33.09 1.78
1587 3154 5.050644 TCAGTTCAAAAGCTGCACATATG 57.949 39.130 1.02 0.00 33.09 1.78
1601 3188 4.107622 GCACATATGCGAGCAGAATTTTT 58.892 39.130 1.58 0.00 43.33 1.94
1621 3208 7.749539 TTTTTACTGTTTTTGCTCTTACTGC 57.250 32.000 0.00 0.00 0.00 4.40
1626 3213 5.049129 ACTGTTTTTGCTCTTACTGCATCTC 60.049 40.000 0.00 0.00 40.34 2.75
1627 3214 5.065914 TGTTTTTGCTCTTACTGCATCTCT 58.934 37.500 0.00 0.00 40.34 3.10
1629 3216 4.541973 TTTGCTCTTACTGCATCTCTGA 57.458 40.909 0.00 0.00 40.34 3.27
1630 3217 4.750021 TTGCTCTTACTGCATCTCTGAT 57.250 40.909 0.00 0.00 40.34 2.90
1631 3218 4.056092 TGCTCTTACTGCATCTCTGATG 57.944 45.455 3.42 3.42 35.31 3.07
1633 3227 3.069300 GCTCTTACTGCATCTCTGATGGA 59.931 47.826 9.24 5.75 0.00 3.41
1636 3230 6.244552 TCTTACTGCATCTCTGATGGAAAT 57.755 37.500 9.24 1.50 0.00 2.17
1648 3242 9.616156 ATCTCTGATGGAAATATATGCATCTTC 57.384 33.333 0.19 2.36 45.31 2.87
1660 3254 3.619233 TGCATCTTCGCATGAATGATG 57.381 42.857 14.80 14.80 39.77 3.07
1662 3256 2.292569 GCATCTTCGCATGAATGATGGT 59.707 45.455 18.10 2.81 38.62 3.55
1663 3257 3.852205 GCATCTTCGCATGAATGATGGTG 60.852 47.826 18.10 12.24 38.62 4.17
1664 3258 3.264998 TCTTCGCATGAATGATGGTGA 57.735 42.857 0.00 0.00 32.61 4.02
1665 3259 3.608796 TCTTCGCATGAATGATGGTGAA 58.391 40.909 0.00 0.00 32.61 3.18
1666 3260 4.201657 TCTTCGCATGAATGATGGTGAAT 58.798 39.130 0.00 0.00 32.61 2.57
1667 3261 4.274214 TCTTCGCATGAATGATGGTGAATC 59.726 41.667 0.00 0.00 32.61 2.52
1668 3262 2.880268 TCGCATGAATGATGGTGAATCC 59.120 45.455 0.00 0.00 34.00 3.01
1669 3263 6.942097 CTTCGCATGAATGATGGTGAATCCA 61.942 44.000 0.00 0.00 41.19 3.41
1670 3264 8.336034 CTTCGCATGAATGATGGTGAATCCAA 62.336 42.308 0.00 0.00 40.69 3.53
1671 3265 9.701229 CTTCGCATGAATGATGGTGAATCCAAA 62.701 40.741 0.00 0.00 40.69 3.28
1724 3321 1.751437 ACGAGATCATCCTGTCGTCA 58.249 50.000 0.00 0.00 40.67 4.35
1736 3333 1.000283 CTGTCGTCACTCCAAAGCTCT 60.000 52.381 0.00 0.00 0.00 4.09
1757 3354 1.734388 GAAAAGTTGCGGTGGTGGCT 61.734 55.000 0.00 0.00 0.00 4.75
1760 3357 3.670377 GTTGCGGTGGTGGCTTCC 61.670 66.667 0.00 0.00 0.00 3.46
1769 3366 1.886542 GTGGTGGCTTCCGAAGAAAAT 59.113 47.619 12.54 0.00 0.00 1.82
1781 3378 2.609459 CGAAGAAAATGATCTCCCCGTG 59.391 50.000 0.00 0.00 0.00 4.94
1817 3414 1.202557 GGTCCCTACGTTGTTGTCACA 60.203 52.381 0.00 0.00 0.00 3.58
1880 3477 3.318017 CACTGGAACGATATTCGGGATC 58.682 50.000 1.69 0.00 45.59 3.36
1976 3573 0.533755 GCTTGGTCGCTGCTGGATAT 60.534 55.000 0.00 0.00 0.00 1.63
1994 3591 5.545335 TGGATATGTCCTGTATTCATCTGCT 59.455 40.000 10.16 0.00 45.32 4.24
2000 3597 5.221521 TGTCCTGTATTCATCTGCTACCATC 60.222 44.000 0.00 0.00 0.00 3.51
2015 3612 4.397417 GCTACCATCTTCTGCATCAGTTTT 59.603 41.667 0.00 0.00 32.61 2.43
2051 3648 4.842531 TGGCTTCACTTTGGATAGATCA 57.157 40.909 0.00 0.00 0.00 2.92
2072 3669 5.436175 TCAACAGGAGAATTTGTTCTGACA 58.564 37.500 8.75 0.00 35.46 3.58
2078 3675 4.761739 GGAGAATTTGTTCTGACACATCCA 59.238 41.667 0.00 0.00 34.98 3.41
2096 3693 1.133072 CCATCCATGCAAATACCCCCT 60.133 52.381 0.00 0.00 0.00 4.79
2129 3732 9.725019 AACTAAGATGTTCATCAGTATTTGTCA 57.275 29.630 14.05 0.00 0.00 3.58
2176 3780 4.675114 GCATTTGTTAGTTTTCTGACCACG 59.325 41.667 0.00 0.00 35.86 4.94
2185 3789 8.603181 GTTAGTTTTCTGACCACGTTAGTTTTA 58.397 33.333 0.00 0.00 31.37 1.52
2224 3829 8.057536 TGTTGTTTTAACATAGTTCCAGTTGT 57.942 30.769 0.00 0.00 38.95 3.32
2230 3835 8.767478 TTTAACATAGTTCCAGTTGTACTAGC 57.233 34.615 0.00 0.00 0.00 3.42
2232 3837 5.967088 ACATAGTTCCAGTTGTACTAGCAG 58.033 41.667 0.00 0.00 0.00 4.24
2234 3839 6.662234 ACATAGTTCCAGTTGTACTAGCAGTA 59.338 38.462 0.00 0.00 0.00 2.74
2244 3849 6.424207 AGTTGTACTAGCAGTAACAAGCTTTC 59.576 38.462 0.00 0.00 42.05 2.62
2245 3850 6.097915 TGTACTAGCAGTAACAAGCTTTCT 57.902 37.500 0.00 0.00 42.05 2.52
2252 3857 5.767168 AGCAGTAACAAGCTTTCTCAAATCT 59.233 36.000 0.00 0.00 38.01 2.40
2255 3860 7.642669 CAGTAACAAGCTTTCTCAAATCTGAA 58.357 34.615 0.00 0.00 0.00 3.02
2260 3865 7.592051 ACAAGCTTTCTCAAATCTGAATTCTC 58.408 34.615 7.05 0.00 0.00 2.87
2280 3885 7.690454 TTCTCAGTTTATAGGGATCAATGGA 57.310 36.000 0.00 0.00 0.00 3.41
2283 3888 7.127186 TCTCAGTTTATAGGGATCAATGGACAA 59.873 37.037 0.00 0.00 0.00 3.18
2284 3889 7.815383 TCAGTTTATAGGGATCAATGGACAAT 58.185 34.615 0.00 0.00 0.00 2.71
2285 3890 7.939039 TCAGTTTATAGGGATCAATGGACAATC 59.061 37.037 0.00 0.00 0.00 2.67
2310 3922 9.006839 TCAACACGAGTAACTTTAGAAGATAGA 57.993 33.333 0.00 0.00 0.00 1.98
2349 3962 9.550406 TTTTCTTATCCTAAAACTGAAAGACGA 57.450 29.630 0.00 0.00 37.43 4.20
2350 3963 9.550406 TTTCTTATCCTAAAACTGAAAGACGAA 57.450 29.630 0.00 0.00 37.43 3.85
2351 3964 8.530269 TCTTATCCTAAAACTGAAAGACGAAC 57.470 34.615 0.00 0.00 37.43 3.95
2352 3965 7.601508 TCTTATCCTAAAACTGAAAGACGAACC 59.398 37.037 0.00 0.00 37.43 3.62
2353 3966 4.383173 TCCTAAAACTGAAAGACGAACCC 58.617 43.478 0.00 0.00 37.43 4.11
2354 3967 3.501062 CCTAAAACTGAAAGACGAACCCC 59.499 47.826 0.00 0.00 37.43 4.95
2355 3968 2.721425 AAACTGAAAGACGAACCCCA 57.279 45.000 0.00 0.00 37.43 4.96
2356 3969 2.721425 AACTGAAAGACGAACCCCAA 57.279 45.000 0.00 0.00 37.43 4.12
2357 3970 2.256117 ACTGAAAGACGAACCCCAAG 57.744 50.000 0.00 0.00 37.43 3.61
2358 3971 0.875059 CTGAAAGACGAACCCCAAGC 59.125 55.000 0.00 0.00 34.07 4.01
2359 3972 0.472471 TGAAAGACGAACCCCAAGCT 59.528 50.000 0.00 0.00 0.00 3.74
2360 3973 1.157585 GAAAGACGAACCCCAAGCTC 58.842 55.000 0.00 0.00 0.00 4.09
2361 3974 0.765510 AAAGACGAACCCCAAGCTCT 59.234 50.000 0.00 0.00 0.00 4.09
2362 3975 0.035458 AAGACGAACCCCAAGCTCTG 59.965 55.000 0.00 0.00 0.00 3.35
2363 3976 0.832135 AGACGAACCCCAAGCTCTGA 60.832 55.000 0.00 0.00 0.00 3.27
2364 3977 0.250513 GACGAACCCCAAGCTCTGAT 59.749 55.000 0.00 0.00 0.00 2.90
2365 3978 1.480954 GACGAACCCCAAGCTCTGATA 59.519 52.381 0.00 0.00 0.00 2.15
2366 3979 1.207329 ACGAACCCCAAGCTCTGATAC 59.793 52.381 0.00 0.00 0.00 2.24
2367 3980 1.207089 CGAACCCCAAGCTCTGATACA 59.793 52.381 0.00 0.00 0.00 2.29
2368 3981 2.633488 GAACCCCAAGCTCTGATACAC 58.367 52.381 0.00 0.00 0.00 2.90
2369 3982 1.958288 ACCCCAAGCTCTGATACACT 58.042 50.000 0.00 0.00 0.00 3.55
2370 3983 1.556911 ACCCCAAGCTCTGATACACTG 59.443 52.381 0.00 0.00 0.00 3.66
2371 3984 1.661341 CCCAAGCTCTGATACACTGC 58.339 55.000 0.00 0.00 0.00 4.40
2372 3985 1.209019 CCCAAGCTCTGATACACTGCT 59.791 52.381 0.00 0.00 35.30 4.24
2373 3986 2.432146 CCCAAGCTCTGATACACTGCTA 59.568 50.000 0.00 0.00 33.28 3.49
2374 3987 3.452474 CCAAGCTCTGATACACTGCTAC 58.548 50.000 0.00 0.00 33.28 3.58
2375 3988 3.131933 CCAAGCTCTGATACACTGCTACT 59.868 47.826 0.00 0.00 33.28 2.57
2376 3989 4.111198 CAAGCTCTGATACACTGCTACTG 58.889 47.826 0.00 0.00 33.28 2.74
2377 3990 3.360867 AGCTCTGATACACTGCTACTGT 58.639 45.455 0.00 0.00 31.71 3.55
2378 3991 3.130164 AGCTCTGATACACTGCTACTGTG 59.870 47.826 3.42 3.42 38.85 3.66
2381 3994 3.444034 TCTGATACACTGCTACTGTGGTC 59.556 47.826 9.05 7.21 37.57 4.02
2383 3996 2.003937 TACACTGCTACTGTGGTCCA 57.996 50.000 9.05 0.00 37.57 4.02
2391 4004 2.234908 GCTACTGTGGTCCATTCTCTGT 59.765 50.000 0.00 0.00 0.00 3.41
2399 4012 3.055094 TGGTCCATTCTCTGTCTTTAGGC 60.055 47.826 0.00 0.00 0.00 3.93
2417 4030 2.975489 AGGCATCCAGTATCCCTGTAAG 59.025 50.000 0.00 0.00 39.74 2.34
2418 4031 2.551071 GGCATCCAGTATCCCTGTAAGC 60.551 54.545 0.00 0.00 39.74 3.09
2420 4033 3.578716 GCATCCAGTATCCCTGTAAGCTA 59.421 47.826 0.00 0.00 39.74 3.32
2426 4039 6.267928 TCCAGTATCCCTGTAAGCTAAGAATC 59.732 42.308 0.00 0.00 39.74 2.52
2428 4041 6.042093 CAGTATCCCTGTAAGCTAAGAATCCA 59.958 42.308 0.00 0.00 36.37 3.41
2430 4043 5.296151 TCCCTGTAAGCTAAGAATCCATG 57.704 43.478 0.00 0.00 0.00 3.66
2431 4044 3.817647 CCCTGTAAGCTAAGAATCCATGC 59.182 47.826 0.00 0.00 0.00 4.06
2433 4046 5.128919 CCTGTAAGCTAAGAATCCATGCTT 58.871 41.667 0.00 0.00 44.65 3.91
2434 4047 5.591877 CCTGTAAGCTAAGAATCCATGCTTT 59.408 40.000 8.87 0.00 42.81 3.51
2435 4048 6.767902 CCTGTAAGCTAAGAATCCATGCTTTA 59.232 38.462 8.87 1.22 42.81 1.85
2436 4049 7.283127 CCTGTAAGCTAAGAATCCATGCTTTAA 59.717 37.037 8.87 0.33 42.81 1.52
2437 4050 7.985476 TGTAAGCTAAGAATCCATGCTTTAAC 58.015 34.615 8.87 4.49 42.81 2.01
2438 4051 7.609918 TGTAAGCTAAGAATCCATGCTTTAACA 59.390 33.333 8.87 6.44 42.81 2.41
2439 4052 6.690194 AGCTAAGAATCCATGCTTTAACAG 57.310 37.500 0.00 0.00 0.00 3.16
2440 4053 6.418101 AGCTAAGAATCCATGCTTTAACAGA 58.582 36.000 0.00 0.00 0.00 3.41
2441 4054 6.317391 AGCTAAGAATCCATGCTTTAACAGAC 59.683 38.462 0.00 0.00 0.00 3.51
2442 4055 6.094048 GCTAAGAATCCATGCTTTAACAGACA 59.906 38.462 0.00 0.00 0.00 3.41
2443 4056 5.886960 AGAATCCATGCTTTAACAGACAC 57.113 39.130 0.00 0.00 0.00 3.67
2444 4057 4.702131 AGAATCCATGCTTTAACAGACACC 59.298 41.667 0.00 0.00 0.00 4.16
2445 4058 3.788227 TCCATGCTTTAACAGACACCT 57.212 42.857 0.00 0.00 0.00 4.00
2446 4059 4.098914 TCCATGCTTTAACAGACACCTT 57.901 40.909 0.00 0.00 0.00 3.50
2447 4060 4.469657 TCCATGCTTTAACAGACACCTTT 58.530 39.130 0.00 0.00 0.00 3.11
2448 4061 5.626142 TCCATGCTTTAACAGACACCTTTA 58.374 37.500 0.00 0.00 0.00 1.85
2449 4062 6.245408 TCCATGCTTTAACAGACACCTTTAT 58.755 36.000 0.00 0.00 0.00 1.40
2450 4063 6.374333 TCCATGCTTTAACAGACACCTTTATC 59.626 38.462 0.00 0.00 0.00 1.75
2451 4064 6.375455 CCATGCTTTAACAGACACCTTTATCT 59.625 38.462 0.00 0.00 0.00 1.98
2452 4065 7.094205 CCATGCTTTAACAGACACCTTTATCTT 60.094 37.037 0.00 0.00 0.00 2.40
2453 4066 7.435068 TGCTTTAACAGACACCTTTATCTTC 57.565 36.000 0.00 0.00 0.00 2.87
2454 4067 6.430000 TGCTTTAACAGACACCTTTATCTTCC 59.570 38.462 0.00 0.00 0.00 3.46
2455 4068 6.655425 GCTTTAACAGACACCTTTATCTTCCT 59.345 38.462 0.00 0.00 0.00 3.36
2456 4069 7.175119 GCTTTAACAGACACCTTTATCTTCCTT 59.825 37.037 0.00 0.00 0.00 3.36
2457 4070 9.720769 CTTTAACAGACACCTTTATCTTCCTTA 57.279 33.333 0.00 0.00 0.00 2.69
2471 4084 6.743575 ATCTTCCTTAATATATTGCCACGC 57.256 37.500 8.28 0.00 0.00 5.34
2472 4085 5.001232 TCTTCCTTAATATATTGCCACGCC 58.999 41.667 8.28 0.00 0.00 5.68
2473 4086 4.634012 TCCTTAATATATTGCCACGCCT 57.366 40.909 8.28 0.00 0.00 5.52
2474 4087 4.980573 TCCTTAATATATTGCCACGCCTT 58.019 39.130 8.28 0.00 0.00 4.35
2475 4088 5.381757 TCCTTAATATATTGCCACGCCTTT 58.618 37.500 8.28 0.00 0.00 3.11
2476 4089 5.830991 TCCTTAATATATTGCCACGCCTTTT 59.169 36.000 8.28 0.00 0.00 2.27
2477 4090 6.016610 TCCTTAATATATTGCCACGCCTTTTC 60.017 38.462 8.28 0.00 0.00 2.29
2478 4091 4.584327 AATATATTGCCACGCCTTTTCC 57.416 40.909 0.00 0.00 0.00 3.13
2479 4092 1.111277 ATATTGCCACGCCTTTTCCC 58.889 50.000 0.00 0.00 0.00 3.97
2480 4093 1.309499 TATTGCCACGCCTTTTCCCG 61.309 55.000 0.00 0.00 0.00 5.14
2481 4094 3.935090 TATTGCCACGCCTTTTCCCGT 62.935 52.381 0.00 0.00 38.35 5.28
2482 4095 2.358984 GCCACGCCTTTTCCCGTA 60.359 61.111 0.00 0.00 35.69 4.02
2483 4096 1.967494 GCCACGCCTTTTCCCGTAA 60.967 57.895 0.00 0.00 35.69 3.18
2484 4097 1.871077 CCACGCCTTTTCCCGTAAC 59.129 57.895 0.00 0.00 35.69 2.50
2485 4098 1.579964 CCACGCCTTTTCCCGTAACC 61.580 60.000 0.00 0.00 35.69 2.85
2486 4099 0.885596 CACGCCTTTTCCCGTAACCA 60.886 55.000 0.00 0.00 35.69 3.67
2487 4100 0.037160 ACGCCTTTTCCCGTAACCAT 59.963 50.000 0.00 0.00 35.69 3.55
2488 4101 1.278699 ACGCCTTTTCCCGTAACCATA 59.721 47.619 0.00 0.00 35.69 2.74
2489 4102 2.092807 ACGCCTTTTCCCGTAACCATAT 60.093 45.455 0.00 0.00 35.69 1.78
2490 4103 2.946990 CGCCTTTTCCCGTAACCATATT 59.053 45.455 0.00 0.00 0.00 1.28
2491 4104 3.379057 CGCCTTTTCCCGTAACCATATTT 59.621 43.478 0.00 0.00 0.00 1.40
2492 4105 4.142337 CGCCTTTTCCCGTAACCATATTTT 60.142 41.667 0.00 0.00 0.00 1.82
2493 4106 5.622687 CGCCTTTTCCCGTAACCATATTTTT 60.623 40.000 0.00 0.00 0.00 1.94
2518 4131 7.510549 TTCCCACTTAATATATTGAAGCAGC 57.489 36.000 8.28 0.00 0.00 5.25
2519 4132 6.600388 TCCCACTTAATATATTGAAGCAGCA 58.400 36.000 8.28 0.00 0.00 4.41
2520 4133 7.233632 TCCCACTTAATATATTGAAGCAGCAT 58.766 34.615 8.28 0.00 0.00 3.79
2521 4134 7.725397 TCCCACTTAATATATTGAAGCAGCATT 59.275 33.333 8.28 0.00 0.00 3.56
2522 4135 7.811236 CCCACTTAATATATTGAAGCAGCATTG 59.189 37.037 8.28 2.60 0.00 2.82
2535 4148 2.401583 AGCATTGCTGTATTCGTCCA 57.598 45.000 11.09 0.00 37.57 4.02
2536 4149 2.710377 AGCATTGCTGTATTCGTCCAA 58.290 42.857 11.09 0.00 37.57 3.53
2537 4150 2.679837 AGCATTGCTGTATTCGTCCAAG 59.320 45.455 11.09 0.00 37.57 3.61
2538 4151 2.677836 GCATTGCTGTATTCGTCCAAGA 59.322 45.455 0.16 0.00 0.00 3.02
2544 4157 3.994392 GCTGTATTCGTCCAAGAAACAGA 59.006 43.478 17.50 0.00 39.15 3.41
2558 4171 8.593679 TCCAAGAAACAGACACTTCTATATTCA 58.406 33.333 0.00 0.00 31.61 2.57
2621 4234 0.301687 CAGTGAATGATGCGCGGTAC 59.698 55.000 8.83 0.00 0.00 3.34
2708 4321 2.345124 AGAAGTACTCGGCTCGGTAT 57.655 50.000 0.00 0.00 0.00 2.73
2717 4330 1.218047 GGCTCGGTATGTGTGCTCA 59.782 57.895 0.00 0.00 0.00 4.26
2759 4372 3.255149 GGACGATCATATACGGTGGAGTT 59.745 47.826 0.00 0.00 0.00 3.01
2991 4604 6.202954 GGTCAATCCTGGATACGATGTTTAAG 59.797 42.308 10.13 0.00 42.51 1.85
2994 4607 5.018539 TCCTGGATACGATGTTTAAGGTG 57.981 43.478 0.00 0.00 42.51 4.00
2997 4610 5.878116 CCTGGATACGATGTTTAAGGTGAAA 59.122 40.000 0.00 0.00 42.51 2.69
3000 4638 9.273016 CTGGATACGATGTTTAAGGTGAAATAT 57.727 33.333 0.00 0.00 42.51 1.28
3011 4649 9.016438 GTTTAAGGTGAAATATTCAGGTAACCA 57.984 33.333 0.00 0.00 41.01 3.67
3055 4696 4.556942 TTGCAAGAACAATGTCTCTGTG 57.443 40.909 0.00 0.00 0.00 3.66
3057 4698 3.561310 TGCAAGAACAATGTCTCTGTGTC 59.439 43.478 0.00 0.00 0.00 3.67
3061 4702 6.564873 GCAAGAACAATGTCTCTGTGTCTTAC 60.565 42.308 0.00 0.00 30.24 2.34
3064 4705 6.926272 AGAACAATGTCTCTGTGTCTTACTTC 59.074 38.462 0.00 0.00 0.00 3.01
3065 4706 5.542779 ACAATGTCTCTGTGTCTTACTTCC 58.457 41.667 0.00 0.00 0.00 3.46
3082 4723 3.245407 ACTTCCTTTGCCTTCTTGCCTAT 60.245 43.478 0.00 0.00 0.00 2.57
3109 4750 2.871182 CAGAGTACTGCATAGCGGAA 57.129 50.000 0.00 0.00 38.46 4.30
3113 4754 1.409427 AGTACTGCATAGCGGAAGTCC 59.591 52.381 4.61 0.00 38.46 3.85
3143 4784 2.076863 GCCGTAGCTCACTGTGAAAAT 58.923 47.619 12.16 3.41 35.50 1.82
3144 4785 2.159653 GCCGTAGCTCACTGTGAAAATG 60.160 50.000 12.16 1.22 35.50 2.32
3148 4789 5.377358 CGTAGCTCACTGTGAAAATGAAAG 58.623 41.667 12.16 0.00 0.00 2.62
3159 4800 8.308931 ACTGTGAAAATGAAAGATGCAATATGT 58.691 29.630 0.00 0.00 0.00 2.29
3162 4803 9.017669 GTGAAAATGAAAGATGCAATATGTCTC 57.982 33.333 0.00 0.00 0.00 3.36
3163 4804 8.741841 TGAAAATGAAAGATGCAATATGTCTCA 58.258 29.630 0.00 0.00 0.00 3.27
3165 4806 9.745880 AAAATGAAAGATGCAATATGTCTCATC 57.254 29.630 0.00 0.00 36.49 2.92
3172 4817 8.289939 AGATGCAATATGTCTCATCTTTTTGT 57.710 30.769 0.00 0.00 41.87 2.83
3174 4819 9.661187 GATGCAATATGTCTCATCTTTTTGTAG 57.339 33.333 0.00 0.00 34.19 2.74
3303 4948 7.280652 GCAACCAATGTCAAATATTTAAGGCAT 59.719 33.333 0.00 0.18 0.00 4.40
3362 5007 8.995220 TGTAAGCTGTAGTAGTAACCAATTTTG 58.005 33.333 0.00 0.00 0.00 2.44
3471 5117 2.893424 ACCCTGCAGATGACCAAAATT 58.107 42.857 17.39 0.00 0.00 1.82
3500 5146 6.264292 TCCACTCTTCTATCTCTAAGCATGTC 59.736 42.308 0.00 0.00 0.00 3.06
3622 5268 5.426689 AGAAATGACACCTTAGATCAGCA 57.573 39.130 0.00 0.00 0.00 4.41
3644 5291 0.951040 CAGGGAGGCAAACGACAGAC 60.951 60.000 0.00 0.00 0.00 3.51
3715 5362 5.303971 GGGAGGATCACAATGAAGATAGTG 58.696 45.833 0.00 0.00 39.41 2.74
3761 5409 4.394729 TCTGTCCAAAGTCGGCTAAAAAT 58.605 39.130 0.00 0.00 0.00 1.82
3838 5486 2.539953 GCGAGTGTAGTCCTCTGAATCG 60.540 54.545 0.00 0.00 32.33 3.34
3982 5630 0.580578 CATTCTGCGATTGAGGCGAG 59.419 55.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.672342 CCTTGCCTTGCCATCATAGC 59.328 55.000 0.00 0.00 0.00 2.97
1 2 0.672342 GCCTTGCCTTGCCATCATAG 59.328 55.000 0.00 0.00 0.00 2.23
2 3 0.033306 TGCCTTGCCTTGCCATCATA 60.033 50.000 0.00 0.00 0.00 2.15
3 4 0.905809 TTGCCTTGCCTTGCCATCAT 60.906 50.000 0.00 0.00 0.00 2.45
4 5 1.533513 TTGCCTTGCCTTGCCATCA 60.534 52.632 0.00 0.00 0.00 3.07
5 6 1.079612 GTTGCCTTGCCTTGCCATC 60.080 57.895 0.00 0.00 0.00 3.51
6 7 2.586293 GGTTGCCTTGCCTTGCCAT 61.586 57.895 0.00 0.00 0.00 4.40
7 8 3.233231 GGTTGCCTTGCCTTGCCA 61.233 61.111 0.00 0.00 0.00 4.92
8 9 3.233231 TGGTTGCCTTGCCTTGCC 61.233 61.111 0.00 0.00 0.00 4.52
9 10 2.029518 GTGGTTGCCTTGCCTTGC 59.970 61.111 0.00 0.00 0.00 4.01
10 11 0.320073 CATGTGGTTGCCTTGCCTTG 60.320 55.000 0.00 0.00 0.00 3.61
11 12 2.051941 CATGTGGTTGCCTTGCCTT 58.948 52.632 0.00 0.00 0.00 4.35
12 13 2.576832 GCATGTGGTTGCCTTGCCT 61.577 57.895 0.00 0.00 36.60 4.75
13 14 2.047939 GCATGTGGTTGCCTTGCC 60.048 61.111 0.00 0.00 36.60 4.52
14 15 1.069427 TTGCATGTGGTTGCCTTGC 59.931 52.632 0.00 0.00 42.06 4.01
15 16 0.940519 CGTTGCATGTGGTTGCCTTG 60.941 55.000 0.00 0.00 42.06 3.61
16 17 1.363443 CGTTGCATGTGGTTGCCTT 59.637 52.632 0.00 0.00 42.06 4.35
17 18 3.041701 CGTTGCATGTGGTTGCCT 58.958 55.556 0.00 0.00 42.06 4.75
18 19 2.734346 GCGTTGCATGTGGTTGCC 60.734 61.111 0.00 0.00 42.06 4.52
19 20 2.734346 GGCGTTGCATGTGGTTGC 60.734 61.111 0.00 0.00 43.07 4.17
33 34 4.452733 GTGGTCCTTCCTCGGGCG 62.453 72.222 0.00 0.00 37.07 6.13
38 39 2.671682 GGCAGGTGGTCCTTCCTC 59.328 66.667 3.69 1.03 42.56 3.71
54 55 1.227263 CACAGGATTACCTCGCCGG 60.227 63.158 0.00 0.00 45.94 6.13
56 57 0.535335 TGTCACAGGATTACCTCGCC 59.465 55.000 0.00 0.00 45.94 5.54
80 81 1.805871 GCCTTTCTCTCGATCTGGCAG 60.806 57.143 8.58 8.58 38.79 4.85
81 82 0.176680 GCCTTTCTCTCGATCTGGCA 59.823 55.000 0.00 0.00 38.79 4.92
100 101 0.250858 TGTTCTCACTGCCATGTGGG 60.251 55.000 0.54 0.00 39.64 4.61
163 188 1.006758 TGGATACCGGGAGTTCTCAGT 59.993 52.381 6.32 0.00 0.00 3.41
187 216 6.772716 TCAAAGTCAAGATAAAGCCTCAAAGT 59.227 34.615 0.00 0.00 0.00 2.66
188 217 7.206981 TCAAAGTCAAGATAAAGCCTCAAAG 57.793 36.000 0.00 0.00 0.00 2.77
210 239 5.192927 ACAATTGTTCTGGACTGACTTTCA 58.807 37.500 4.92 0.00 0.00 2.69
212 241 5.440610 AGACAATTGTTCTGGACTGACTTT 58.559 37.500 13.36 0.00 0.00 2.66
250 279 1.070601 AGCAAAGGCACCAATGTTTCC 59.929 47.619 0.00 0.00 44.61 3.13
332 361 2.232941 CCCATGAAAGCAAGCACTTGAT 59.767 45.455 14.44 4.82 42.93 2.57
333 362 1.614903 CCCATGAAAGCAAGCACTTGA 59.385 47.619 14.44 0.00 42.93 3.02
334 363 1.614903 TCCCATGAAAGCAAGCACTTG 59.385 47.619 6.01 6.01 43.14 3.16
377 406 0.385223 GCAAGAGCAGTCGCAGTTTG 60.385 55.000 0.00 0.00 42.27 2.93
409 438 0.740737 AAATCGGCATTGTAGCAGCC 59.259 50.000 0.00 0.00 44.89 4.85
424 453 7.587037 TGATTTGACATCCCTATGGAAAATC 57.413 36.000 11.88 11.88 45.98 2.17
494 524 8.250143 TGAGTGATATAGATCTTAAAGCACCA 57.750 34.615 0.00 4.30 32.79 4.17
510 540 6.586344 CCACAGGAGTATGTTTGAGTGATAT 58.414 40.000 0.00 0.00 0.00 1.63
558 589 7.402071 TCATACTCCCTGTCTAAGTAACCAATT 59.598 37.037 0.00 0.00 0.00 2.32
575 606 2.432510 CTCCCAGTCAGTTCATACTCCC 59.567 54.545 0.00 0.00 30.26 4.30
629 661 3.868077 CCTGTTTCTAATGAGAAGCTCCG 59.132 47.826 8.05 0.00 42.66 4.63
650 682 9.822185 AATAATGAGATGAGTTTAAAATTGGCC 57.178 29.630 0.00 0.00 0.00 5.36
660 692 7.414540 GCTTCCACGAAATAATGAGATGAGTTT 60.415 37.037 0.00 0.00 0.00 2.66
700 767 3.715648 ATCCCTAAGTCCCATGAGAGT 57.284 47.619 0.00 0.00 0.00 3.24
712 779 3.834813 TCCGATCCATGAGAATCCCTAAG 59.165 47.826 0.00 0.00 0.00 2.18
731 798 4.933064 GCCACCGATCGAGCTCCG 62.933 72.222 18.66 5.99 40.25 4.63
757 2212 2.973899 CTCCTCGTGGTGGAGTGG 59.026 66.667 2.99 0.00 44.42 4.00
773 2230 4.677151 ACTTCCTTCCCGGGGCCT 62.677 66.667 23.50 0.00 0.00 5.19
775 2232 4.426313 CCACTTCCTTCCCGGGGC 62.426 72.222 23.50 0.00 0.00 5.80
777 2234 2.670148 CCTCCACTTCCTTCCCGGG 61.670 68.421 16.85 16.85 0.00 5.73
779 2236 1.901085 CTCCTCCACTTCCTTCCCG 59.099 63.158 0.00 0.00 0.00 5.14
781 2238 0.539518 GAGCTCCTCCACTTCCTTCC 59.460 60.000 0.87 0.00 0.00 3.46
801 2274 2.757124 CCCCATTCCTCTTCCCCCG 61.757 68.421 0.00 0.00 0.00 5.73
802 2275 3.074907 GCCCCATTCCTCTTCCCCC 62.075 68.421 0.00 0.00 0.00 5.40
804 2277 2.193248 CGCCCCATTCCTCTTCCC 59.807 66.667 0.00 0.00 0.00 3.97
822 2295 1.300481 GCTATTTCTTCTCGCCCCAC 58.700 55.000 0.00 0.00 0.00 4.61
823 2296 0.179084 CGCTATTTCTTCTCGCCCCA 60.179 55.000 0.00 0.00 0.00 4.96
884 2370 1.472662 CGTTCTCCAGGGTCCACACT 61.473 60.000 0.00 0.00 0.00 3.55
886 2372 1.458777 ACGTTCTCCAGGGTCCACA 60.459 57.895 0.00 0.00 0.00 4.17
888 2374 2.879233 GCACGTTCTCCAGGGTCCA 61.879 63.158 0.00 0.00 0.00 4.02
889 2375 2.047179 GCACGTTCTCCAGGGTCC 60.047 66.667 0.00 0.00 0.00 4.46
890 2376 2.432628 CGCACGTTCTCCAGGGTC 60.433 66.667 0.00 0.00 0.00 4.46
891 2377 4.003788 CCGCACGTTCTCCAGGGT 62.004 66.667 0.00 0.00 0.00 4.34
892 2378 4.760047 CCCGCACGTTCTCCAGGG 62.760 72.222 0.00 0.00 0.00 4.45
893 2379 4.760047 CCCCGCACGTTCTCCAGG 62.760 72.222 0.00 0.00 0.00 4.45
894 2380 4.760047 CCCCCGCACGTTCTCCAG 62.760 72.222 0.00 0.00 0.00 3.86
909 2395 0.321996 AAACGCTCCTTCACTCTCCC 59.678 55.000 0.00 0.00 0.00 4.30
994 2484 1.141053 AGGGGATAACGTCATGGCTTC 59.859 52.381 0.00 0.00 0.00 3.86
1119 2627 2.203938 TTGGGGAGGAGGACGCTT 60.204 61.111 0.00 0.00 0.00 4.68
1413 2927 6.359617 CGTAATGACACCAAATCAAACAACTC 59.640 38.462 0.00 0.00 0.00 3.01
1416 2930 6.261158 TCTCGTAATGACACCAAATCAAACAA 59.739 34.615 0.00 0.00 0.00 2.83
1427 2941 3.512680 CTTCAGGTCTCGTAATGACACC 58.487 50.000 0.00 0.00 35.99 4.16
1429 2943 2.560981 TGCTTCAGGTCTCGTAATGACA 59.439 45.455 0.00 0.00 36.26 3.58
1430 2944 3.232213 TGCTTCAGGTCTCGTAATGAC 57.768 47.619 0.00 0.00 0.00 3.06
1431 2945 3.489229 CGATGCTTCAGGTCTCGTAATGA 60.489 47.826 0.08 0.00 0.00 2.57
1432 2946 2.791560 CGATGCTTCAGGTCTCGTAATG 59.208 50.000 0.08 0.00 0.00 1.90
1433 2947 2.223829 CCGATGCTTCAGGTCTCGTAAT 60.224 50.000 0.08 0.00 0.00 1.89
1434 2948 1.134367 CCGATGCTTCAGGTCTCGTAA 59.866 52.381 0.08 0.00 0.00 3.18
1438 2952 1.086634 GTGCCGATGCTTCAGGTCTC 61.087 60.000 0.08 0.00 38.71 3.36
1439 2953 1.078848 GTGCCGATGCTTCAGGTCT 60.079 57.895 0.08 0.00 38.71 3.85
1440 2954 1.375908 TGTGCCGATGCTTCAGGTC 60.376 57.895 0.08 0.93 38.71 3.85
1441 2955 1.672356 GTGTGCCGATGCTTCAGGT 60.672 57.895 0.08 0.00 38.71 4.00
1442 2956 1.376424 AGTGTGCCGATGCTTCAGG 60.376 57.895 0.08 3.69 38.71 3.86
1443 2957 0.671472 TCAGTGTGCCGATGCTTCAG 60.671 55.000 0.08 0.00 38.71 3.02
1447 2961 2.401583 TAATTCAGTGTGCCGATGCT 57.598 45.000 0.00 0.00 38.71 3.79
1448 2962 2.355756 ACATAATTCAGTGTGCCGATGC 59.644 45.455 0.00 0.00 38.26 3.91
1452 3012 4.433615 ACTCTACATAATTCAGTGTGCCG 58.566 43.478 0.00 0.00 0.00 5.69
1456 3016 8.950210 CAATCCAAACTCTACATAATTCAGTGT 58.050 33.333 0.00 0.00 0.00 3.55
1457 3017 8.400947 CCAATCCAAACTCTACATAATTCAGTG 58.599 37.037 0.00 0.00 0.00 3.66
1458 3018 7.557719 CCCAATCCAAACTCTACATAATTCAGT 59.442 37.037 0.00 0.00 0.00 3.41
1466 3026 5.431731 TGTATCCCCAATCCAAACTCTACAT 59.568 40.000 0.00 0.00 0.00 2.29
1495 3055 5.122239 CGAAATCTACTCCAGCATTCAACAA 59.878 40.000 0.00 0.00 0.00 2.83
1499 3059 3.118629 AGCGAAATCTACTCCAGCATTCA 60.119 43.478 0.00 0.00 0.00 2.57
1500 3060 3.462021 AGCGAAATCTACTCCAGCATTC 58.538 45.455 0.00 0.00 0.00 2.67
1507 3067 2.205911 GGCAGAAGCGAAATCTACTCC 58.794 52.381 0.00 0.00 43.41 3.85
1518 3085 3.123620 GGCAGTCTGGCAGAAGCG 61.124 66.667 26.79 17.08 43.14 4.68
1525 3092 2.531522 AAAATTTGTGGCAGTCTGGC 57.468 45.000 19.16 19.16 44.03 4.85
1526 3093 2.545106 GCAAAAATTTGTGGCAGTCTGG 59.455 45.455 10.38 0.00 40.24 3.86
1527 3094 3.246699 CAGCAAAAATTTGTGGCAGTCTG 59.753 43.478 10.38 4.80 40.24 3.51
1528 3095 3.460103 CAGCAAAAATTTGTGGCAGTCT 58.540 40.909 10.38 0.00 40.24 3.24
1529 3096 2.032636 GCAGCAAAAATTTGTGGCAGTC 60.033 45.455 10.38 0.00 40.24 3.51
1530 3097 1.941975 GCAGCAAAAATTTGTGGCAGT 59.058 42.857 10.38 0.00 40.24 4.40
1531 3098 2.215196 AGCAGCAAAAATTTGTGGCAG 58.785 42.857 10.38 4.17 39.82 4.85
1532 3099 2.328819 AGCAGCAAAAATTTGTGGCA 57.671 40.000 10.38 0.00 39.82 4.92
1533 3100 3.652274 TCTAGCAGCAAAAATTTGTGGC 58.348 40.909 10.38 6.05 40.24 5.01
1534 3101 7.092716 ACTAATCTAGCAGCAAAAATTTGTGG 58.907 34.615 10.38 0.00 40.24 4.17
1544 3111 5.003160 TGAAGCAAACTAATCTAGCAGCAA 58.997 37.500 0.00 0.00 0.00 3.91
1549 3116 6.727824 TGAACTGAAGCAAACTAATCTAGC 57.272 37.500 0.00 0.00 0.00 3.42
1580 3147 6.412943 CAGTAAAAATTCTGCTCGCATATGTG 59.587 38.462 10.11 10.11 0.00 3.21
1583 3150 6.683974 ACAGTAAAAATTCTGCTCGCATAT 57.316 33.333 0.00 0.00 35.37 1.78
1585 3152 5.376854 AACAGTAAAAATTCTGCTCGCAT 57.623 34.783 0.00 0.00 35.37 4.73
1586 3153 4.829064 AACAGTAAAAATTCTGCTCGCA 57.171 36.364 0.00 0.00 35.37 5.10
1587 3154 6.347110 CAAAAACAGTAAAAATTCTGCTCGC 58.653 36.000 0.00 0.00 35.37 5.03
1589 3156 7.468922 AGCAAAAACAGTAAAAATTCTGCTC 57.531 32.000 0.00 0.00 35.37 4.26
1590 3157 7.267857 AGAGCAAAAACAGTAAAAATTCTGCT 58.732 30.769 0.00 0.00 39.02 4.24
1591 3158 7.468922 AGAGCAAAAACAGTAAAAATTCTGC 57.531 32.000 0.00 0.00 35.37 4.26
1596 3163 7.978975 TGCAGTAAGAGCAAAAACAGTAAAAAT 59.021 29.630 0.00 0.00 39.39 1.82
1597 3164 7.316640 TGCAGTAAGAGCAAAAACAGTAAAAA 58.683 30.769 0.00 0.00 39.39 1.94
1601 3188 5.997746 AGATGCAGTAAGAGCAAAAACAGTA 59.002 36.000 0.00 0.00 46.27 2.74
1621 3208 8.966069 AGATGCATATATTTCCATCAGAGATG 57.034 34.615 0.00 0.07 37.21 2.90
1626 3213 6.093082 TGCGAAGATGCATATATTTCCATCAG 59.907 38.462 0.00 9.69 40.62 2.90
1627 3214 5.939296 TGCGAAGATGCATATATTTCCATCA 59.061 36.000 0.00 0.00 40.62 3.07
1648 3242 2.619646 TGGATTCACCATCATTCATGCG 59.380 45.455 0.00 0.00 44.64 4.73
1693 3290 6.018913 CAGGATGATCTCGTTCTGAATGAAAG 60.019 42.308 12.94 3.62 40.22 2.62
1696 3293 4.403752 ACAGGATGATCTCGTTCTGAATGA 59.596 41.667 13.51 11.54 40.22 2.57
1697 3294 4.691175 ACAGGATGATCTCGTTCTGAATG 58.309 43.478 13.51 3.17 40.22 2.67
1736 3333 1.388065 CCACCACCGCAACTTTTCCA 61.388 55.000 0.00 0.00 0.00 3.53
1757 3354 3.681594 CGGGGAGATCATTTTCTTCGGAA 60.682 47.826 0.00 0.00 0.00 4.30
1760 3357 2.609459 CACGGGGAGATCATTTTCTTCG 59.391 50.000 0.00 0.00 0.00 3.79
1769 3366 0.617535 ACATCCACACGGGGAGATCA 60.618 55.000 0.00 0.00 41.08 2.92
1781 3378 3.179265 CCGTCGTCGCACATCCAC 61.179 66.667 0.00 0.00 35.54 4.02
1817 3414 2.377136 AGAACCATCAAGCGGGTCT 58.623 52.632 0.00 0.00 46.12 3.85
1880 3477 2.032620 AGTTCCACCAGCCTATCGTAG 58.967 52.381 0.00 0.00 0.00 3.51
1934 3531 2.028112 AGAACCGCTCTGCAGTGAATTA 60.028 45.455 19.61 0.00 31.12 1.40
1976 3573 4.030216 TGGTAGCAGATGAATACAGGACA 58.970 43.478 0.00 0.00 0.00 4.02
1994 3591 4.701651 CCAAAACTGATGCAGAAGATGGTA 59.298 41.667 5.48 0.00 35.18 3.25
2000 3597 2.669364 GCACCAAAACTGATGCAGAAG 58.331 47.619 0.82 0.00 38.00 2.85
2015 3612 4.358841 CCATGGGTTCCCGCACCA 62.359 66.667 2.85 0.00 38.79 4.17
2039 3636 7.890127 ACAAATTCTCCTGTTGATCTATCCAAA 59.110 33.333 0.00 0.00 0.00 3.28
2051 3648 5.192927 TGTGTCAGAACAAATTCTCCTGTT 58.807 37.500 0.00 0.00 43.69 3.16
2072 3669 3.233507 GGGTATTTGCATGGATGGATGT 58.766 45.455 0.00 0.00 0.00 3.06
2078 3675 3.331889 CTCTAGGGGGTATTTGCATGGAT 59.668 47.826 0.00 0.00 0.00 3.41
2096 3693 8.824756 ACTGATGAACATCTTAGTTACCTCTA 57.175 34.615 14.50 0.00 38.60 2.43
2114 3711 9.513906 TTTTCCTATTGTGACAAATACTGATGA 57.486 29.630 0.62 0.00 0.00 2.92
2152 3756 5.587289 GTGGTCAGAAAACTAACAAATGCA 58.413 37.500 0.00 0.00 0.00 3.96
2154 3758 5.816919 ACGTGGTCAGAAAACTAACAAATG 58.183 37.500 0.00 0.00 0.00 2.32
2159 3763 6.594284 AACTAACGTGGTCAGAAAACTAAC 57.406 37.500 0.00 0.00 0.00 2.34
2201 3805 9.398538 AGTACAACTGGAACTATGTTAAAACAA 57.601 29.630 0.00 0.00 43.03 2.83
2208 3813 6.014499 ACTGCTAGTACAACTGGAACTATGTT 60.014 38.462 0.00 0.00 0.00 2.71
2211 3816 7.177921 TGTTACTGCTAGTACAACTGGAACTAT 59.822 37.037 12.62 0.00 28.93 2.12
2224 3829 6.340962 TGAGAAAGCTTGTTACTGCTAGTA 57.659 37.500 0.00 0.00 38.75 1.82
2228 3833 5.767168 AGATTTGAGAAAGCTTGTTACTGCT 59.233 36.000 0.00 0.00 41.82 4.24
2230 3835 7.194607 TCAGATTTGAGAAAGCTTGTTACTG 57.805 36.000 0.00 2.95 34.36 2.74
2232 3837 9.122613 GAATTCAGATTTGAGAAAGCTTGTTAC 57.877 33.333 0.00 0.00 34.36 2.50
2234 3839 7.949434 AGAATTCAGATTTGAGAAAGCTTGTT 58.051 30.769 8.44 0.00 34.36 2.83
2252 3857 9.565090 CATTGATCCCTATAAACTGAGAATTCA 57.435 33.333 8.44 0.00 0.00 2.57
2255 3860 8.160106 GTCCATTGATCCCTATAAACTGAGAAT 58.840 37.037 0.00 0.00 0.00 2.40
2260 3865 7.720957 TGATTGTCCATTGATCCCTATAAACTG 59.279 37.037 0.00 0.00 0.00 3.16
2262 3867 8.352942 GTTGATTGTCCATTGATCCCTATAAAC 58.647 37.037 0.00 0.00 0.00 2.01
2270 3875 3.689161 TCGTGTTGATTGTCCATTGATCC 59.311 43.478 0.00 0.00 0.00 3.36
2272 3877 4.326826 ACTCGTGTTGATTGTCCATTGAT 58.673 39.130 0.00 0.00 0.00 2.57
2280 3885 7.924412 TCTTCTAAAGTTACTCGTGTTGATTGT 59.076 33.333 0.00 0.00 0.00 2.71
2283 3888 9.790389 CTATCTTCTAAAGTTACTCGTGTTGAT 57.210 33.333 0.00 0.00 0.00 2.57
2284 3889 9.006839 TCTATCTTCTAAAGTTACTCGTGTTGA 57.993 33.333 0.00 0.00 0.00 3.18
2285 3890 9.622004 TTCTATCTTCTAAAGTTACTCGTGTTG 57.378 33.333 0.00 0.00 0.00 3.33
2345 3958 0.250513 ATCAGAGCTTGGGGTTCGTC 59.749 55.000 0.00 0.00 0.00 4.20
2346 3959 1.207329 GTATCAGAGCTTGGGGTTCGT 59.793 52.381 0.00 0.00 0.00 3.85
2347 3960 1.207089 TGTATCAGAGCTTGGGGTTCG 59.793 52.381 0.00 0.00 0.00 3.95
2348 3961 2.237392 AGTGTATCAGAGCTTGGGGTTC 59.763 50.000 0.00 0.00 0.00 3.62
2349 3962 2.026822 CAGTGTATCAGAGCTTGGGGTT 60.027 50.000 0.00 0.00 0.00 4.11
2350 3963 1.556911 CAGTGTATCAGAGCTTGGGGT 59.443 52.381 0.00 0.00 0.00 4.95
2351 3964 1.745141 GCAGTGTATCAGAGCTTGGGG 60.745 57.143 0.00 0.00 0.00 4.96
2352 3965 1.209019 AGCAGTGTATCAGAGCTTGGG 59.791 52.381 0.00 0.00 29.98 4.12
2353 3966 2.687700 AGCAGTGTATCAGAGCTTGG 57.312 50.000 0.00 0.00 29.98 3.61
2354 3967 4.111198 CAGTAGCAGTGTATCAGAGCTTG 58.889 47.826 0.00 0.00 36.80 4.01
2355 3968 3.766591 ACAGTAGCAGTGTATCAGAGCTT 59.233 43.478 0.00 0.00 36.80 3.74
2356 3969 3.130164 CACAGTAGCAGTGTATCAGAGCT 59.870 47.826 0.00 0.00 39.22 4.09
2357 3970 3.443037 CACAGTAGCAGTGTATCAGAGC 58.557 50.000 0.00 0.00 29.11 4.09
2358 3971 3.445450 ACCACAGTAGCAGTGTATCAGAG 59.555 47.826 0.00 0.00 35.24 3.35
2359 3972 3.431415 ACCACAGTAGCAGTGTATCAGA 58.569 45.455 0.00 0.00 35.24 3.27
2360 3973 3.429547 GGACCACAGTAGCAGTGTATCAG 60.430 52.174 0.00 0.00 35.24 2.90
2361 3974 2.496070 GGACCACAGTAGCAGTGTATCA 59.504 50.000 0.00 0.00 35.24 2.15
2362 3975 2.496070 TGGACCACAGTAGCAGTGTATC 59.504 50.000 0.00 0.00 35.24 2.24
2363 3976 2.536066 TGGACCACAGTAGCAGTGTAT 58.464 47.619 0.00 0.00 35.24 2.29
2364 3977 2.003937 TGGACCACAGTAGCAGTGTA 57.996 50.000 0.00 0.00 35.24 2.90
2365 3978 1.352083 ATGGACCACAGTAGCAGTGT 58.648 50.000 0.00 0.00 35.24 3.55
2366 3979 2.027745 AGAATGGACCACAGTAGCAGTG 60.028 50.000 0.00 0.00 36.76 3.66
2367 3980 2.234908 GAGAATGGACCACAGTAGCAGT 59.765 50.000 0.00 0.00 0.00 4.40
2368 3981 2.499289 AGAGAATGGACCACAGTAGCAG 59.501 50.000 0.00 0.00 0.00 4.24
2369 3982 2.234661 CAGAGAATGGACCACAGTAGCA 59.765 50.000 0.00 0.00 0.00 3.49
2370 3983 2.234908 ACAGAGAATGGACCACAGTAGC 59.765 50.000 0.00 0.00 0.00 3.58
2371 3984 3.766591 AGACAGAGAATGGACCACAGTAG 59.233 47.826 0.00 0.00 0.00 2.57
2372 3985 3.779444 AGACAGAGAATGGACCACAGTA 58.221 45.455 0.00 0.00 0.00 2.74
2373 3986 2.614259 AGACAGAGAATGGACCACAGT 58.386 47.619 0.00 0.00 0.00 3.55
2374 3987 3.692257 AAGACAGAGAATGGACCACAG 57.308 47.619 0.00 0.00 0.00 3.66
2375 3988 4.020218 CCTAAAGACAGAGAATGGACCACA 60.020 45.833 0.00 0.00 0.00 4.17
2376 3989 4.508662 CCTAAAGACAGAGAATGGACCAC 58.491 47.826 0.00 0.00 0.00 4.16
2377 3990 3.055094 GCCTAAAGACAGAGAATGGACCA 60.055 47.826 0.00 0.00 0.00 4.02
2378 3991 3.055094 TGCCTAAAGACAGAGAATGGACC 60.055 47.826 0.00 0.00 0.00 4.46
2381 3994 4.133078 GGATGCCTAAAGACAGAGAATGG 58.867 47.826 0.00 0.00 0.00 3.16
2383 3996 4.472833 ACTGGATGCCTAAAGACAGAGAAT 59.527 41.667 0.00 0.00 0.00 2.40
2417 4030 6.094048 TGTCTGTTAAAGCATGGATTCTTAGC 59.906 38.462 0.00 0.00 0.00 3.09
2418 4031 7.414540 GGTGTCTGTTAAAGCATGGATTCTTAG 60.415 40.741 0.00 0.00 0.00 2.18
2420 4033 5.183904 GGTGTCTGTTAAAGCATGGATTCTT 59.816 40.000 0.00 0.00 0.00 2.52
2426 4039 4.853924 AAAGGTGTCTGTTAAAGCATGG 57.146 40.909 0.00 0.00 0.00 3.66
2428 4041 7.121315 GGAAGATAAAGGTGTCTGTTAAAGCAT 59.879 37.037 0.00 0.00 0.00 3.79
2430 4043 6.655425 AGGAAGATAAAGGTGTCTGTTAAAGC 59.345 38.462 0.00 0.00 0.00 3.51
2431 4044 8.622948 AAGGAAGATAAAGGTGTCTGTTAAAG 57.377 34.615 0.00 0.00 0.00 1.85
2445 4058 8.726988 GCGTGGCAATATATTAAGGAAGATAAA 58.273 33.333 0.00 0.00 0.00 1.40
2446 4059 7.335924 GGCGTGGCAATATATTAAGGAAGATAA 59.664 37.037 0.00 0.00 0.00 1.75
2447 4060 6.821665 GGCGTGGCAATATATTAAGGAAGATA 59.178 38.462 0.00 0.00 0.00 1.98
2448 4061 5.648092 GGCGTGGCAATATATTAAGGAAGAT 59.352 40.000 0.00 0.00 0.00 2.40
2449 4062 5.001232 GGCGTGGCAATATATTAAGGAAGA 58.999 41.667 0.00 0.00 0.00 2.87
2450 4063 5.003804 AGGCGTGGCAATATATTAAGGAAG 58.996 41.667 0.00 0.00 0.00 3.46
2451 4064 4.980573 AGGCGTGGCAATATATTAAGGAA 58.019 39.130 0.00 0.00 0.00 3.36
2452 4065 4.634012 AGGCGTGGCAATATATTAAGGA 57.366 40.909 0.00 0.00 0.00 3.36
2453 4066 5.705609 AAAGGCGTGGCAATATATTAAGG 57.294 39.130 0.00 0.00 0.00 2.69
2454 4067 6.149633 GGAAAAGGCGTGGCAATATATTAAG 58.850 40.000 0.00 0.00 0.00 1.85
2455 4068 5.010213 GGGAAAAGGCGTGGCAATATATTAA 59.990 40.000 0.00 0.00 0.00 1.40
2456 4069 4.521256 GGGAAAAGGCGTGGCAATATATTA 59.479 41.667 0.00 0.00 0.00 0.98
2457 4070 3.320826 GGGAAAAGGCGTGGCAATATATT 59.679 43.478 0.00 0.00 0.00 1.28
2458 4071 2.890945 GGGAAAAGGCGTGGCAATATAT 59.109 45.455 0.00 0.00 0.00 0.86
2459 4072 2.303175 GGGAAAAGGCGTGGCAATATA 58.697 47.619 0.00 0.00 0.00 0.86
2460 4073 1.111277 GGGAAAAGGCGTGGCAATAT 58.889 50.000 0.00 0.00 0.00 1.28
2461 4074 1.309499 CGGGAAAAGGCGTGGCAATA 61.309 55.000 0.00 0.00 0.00 1.90
2462 4075 2.635443 CGGGAAAAGGCGTGGCAAT 61.635 57.895 0.00 0.00 0.00 3.56
2463 4076 2.677765 TACGGGAAAAGGCGTGGCAA 62.678 55.000 0.00 0.00 0.00 4.52
2464 4077 2.677765 TTACGGGAAAAGGCGTGGCA 62.678 55.000 0.00 0.00 0.00 4.92
2465 4078 1.967494 TTACGGGAAAAGGCGTGGC 60.967 57.895 0.00 0.00 0.00 5.01
2466 4079 1.579964 GGTTACGGGAAAAGGCGTGG 61.580 60.000 0.00 0.00 0.00 4.94
2467 4080 0.885596 TGGTTACGGGAAAAGGCGTG 60.886 55.000 0.00 0.00 0.00 5.34
2468 4081 0.037160 ATGGTTACGGGAAAAGGCGT 59.963 50.000 0.00 0.00 0.00 5.68
2469 4082 2.027003 TATGGTTACGGGAAAAGGCG 57.973 50.000 0.00 0.00 0.00 5.52
2470 4083 4.994907 AAATATGGTTACGGGAAAAGGC 57.005 40.909 0.00 0.00 0.00 4.35
2492 4105 8.413229 GCTGCTTCAATATATTAAGTGGGAAAA 58.587 33.333 0.00 0.00 0.00 2.29
2493 4106 7.559533 TGCTGCTTCAATATATTAAGTGGGAAA 59.440 33.333 0.00 0.00 0.00 3.13
2494 4107 7.059788 TGCTGCTTCAATATATTAAGTGGGAA 58.940 34.615 0.00 0.00 0.00 3.97
2495 4108 6.600388 TGCTGCTTCAATATATTAAGTGGGA 58.400 36.000 0.00 0.00 0.00 4.37
2496 4109 6.882610 TGCTGCTTCAATATATTAAGTGGG 57.117 37.500 0.00 0.90 0.00 4.61
2497 4110 7.327761 GCAATGCTGCTTCAATATATTAAGTGG 59.672 37.037 0.00 2.75 45.74 4.00
2498 4111 8.224169 GCAATGCTGCTTCAATATATTAAGTG 57.776 34.615 0.00 3.01 45.74 3.16
2516 4129 2.401583 TGGACGAATACAGCAATGCT 57.598 45.000 0.00 0.00 40.77 3.79
2517 4130 2.677836 TCTTGGACGAATACAGCAATGC 59.322 45.455 0.00 0.00 0.00 3.56
2518 4131 4.944962 TTCTTGGACGAATACAGCAATG 57.055 40.909 0.00 0.00 0.00 2.82
2519 4132 4.759693 TGTTTCTTGGACGAATACAGCAAT 59.240 37.500 0.00 0.00 0.00 3.56
2520 4133 4.130857 TGTTTCTTGGACGAATACAGCAA 58.869 39.130 0.00 0.00 0.00 3.91
2521 4134 3.734463 TGTTTCTTGGACGAATACAGCA 58.266 40.909 0.00 0.00 0.00 4.41
2522 4135 3.994392 TCTGTTTCTTGGACGAATACAGC 59.006 43.478 0.00 0.00 35.04 4.40
2523 4136 4.988540 TGTCTGTTTCTTGGACGAATACAG 59.011 41.667 0.00 0.00 35.62 2.74
2524 4137 4.748102 GTGTCTGTTTCTTGGACGAATACA 59.252 41.667 0.00 0.00 33.21 2.29
2525 4138 4.989168 AGTGTCTGTTTCTTGGACGAATAC 59.011 41.667 0.00 0.00 33.21 1.89
2526 4139 5.209818 AGTGTCTGTTTCTTGGACGAATA 57.790 39.130 0.00 0.00 33.21 1.75
2527 4140 4.073293 AGTGTCTGTTTCTTGGACGAAT 57.927 40.909 0.00 0.00 33.21 3.34
2528 4141 3.536956 AGTGTCTGTTTCTTGGACGAA 57.463 42.857 0.00 0.00 33.21 3.85
2529 4142 3.132289 AGAAGTGTCTGTTTCTTGGACGA 59.868 43.478 0.00 0.00 29.64 4.20
2530 4143 3.458189 AGAAGTGTCTGTTTCTTGGACG 58.542 45.455 0.00 0.00 29.64 4.79
2531 4144 8.779354 AATATAGAAGTGTCTGTTTCTTGGAC 57.221 34.615 0.00 0.00 35.42 4.02
2532 4145 8.593679 TGAATATAGAAGTGTCTGTTTCTTGGA 58.406 33.333 0.00 0.00 35.42 3.53
2533 4146 8.777865 TGAATATAGAAGTGTCTGTTTCTTGG 57.222 34.615 0.00 0.00 35.42 3.61
2537 4150 9.809096 TGAGATGAATATAGAAGTGTCTGTTTC 57.191 33.333 0.00 0.00 35.12 2.78
2568 4181 8.084985 TGTCCTGACATAGTATCCAATTACAA 57.915 34.615 0.00 0.00 36.21 2.41
2582 4195 8.940397 TCACTGAATATATCTGTCCTGACATA 57.060 34.615 0.00 0.00 41.01 2.29
2621 4234 2.581354 CCCTCTGGCCAGTCGAAG 59.419 66.667 31.58 20.94 0.00 3.79
2717 4330 2.489329 CCGATGAAAATCAGCAACCAGT 59.511 45.455 0.00 0.00 31.10 4.00
2759 4372 0.107214 GATCCCTCGGGTTCATTGCA 60.107 55.000 7.96 0.00 34.89 4.08
2951 4564 0.615331 TGACCTTCTGCTGGACATCC 59.385 55.000 0.00 0.00 0.00 3.51
2991 4604 7.404671 ACATTGGTTACCTGAATATTTCACC 57.595 36.000 2.07 0.00 35.46 4.02
3000 4638 9.621629 CTTTACCATATACATTGGTTACCTGAA 57.378 33.333 2.07 0.00 45.19 3.02
3002 4640 8.974060 ACTTTACCATATACATTGGTTACCTG 57.026 34.615 2.07 0.00 45.19 4.00
3022 4660 8.629158 ACATTGTTCTTGCAAATACAGACTTTA 58.371 29.630 0.00 0.00 31.63 1.85
3026 4664 6.672147 AGACATTGTTCTTGCAAATACAGAC 58.328 36.000 0.00 0.00 31.63 3.51
3030 4668 6.580041 CACAGAGACATTGTTCTTGCAAATAC 59.420 38.462 0.00 1.98 31.63 1.89
3031 4669 6.262944 ACACAGAGACATTGTTCTTGCAAATA 59.737 34.615 0.00 0.00 31.63 1.40
3041 4679 5.992217 GGAAGTAAGACACAGAGACATTGTT 59.008 40.000 0.00 0.00 0.00 2.83
3055 4696 4.320567 GCAAGAAGGCAAAGGAAGTAAGAC 60.321 45.833 0.00 0.00 0.00 3.01
3057 4698 3.057245 GGCAAGAAGGCAAAGGAAGTAAG 60.057 47.826 0.00 0.00 43.51 2.34
3115 4756 2.094894 CAGTGAGCTACGGCAAATTCTG 59.905 50.000 0.00 0.00 41.70 3.02
3125 4766 4.990543 TTCATTTTCACAGTGAGCTACG 57.009 40.909 2.82 0.00 0.00 3.51
3130 4771 5.765176 TGCATCTTTCATTTTCACAGTGAG 58.235 37.500 2.82 0.00 0.00 3.51
3148 4789 9.661187 CTACAAAAAGATGAGACATATTGCATC 57.339 33.333 0.00 0.00 37.88 3.91
3159 4800 9.739276 AATGTATGGAACTACAAAAAGATGAGA 57.261 29.630 0.00 0.00 35.37 3.27
3269 4914 6.751514 ATTTGACATTGGTTGCTCGTAATA 57.248 33.333 0.00 0.00 0.00 0.98
3270 4915 5.643379 ATTTGACATTGGTTGCTCGTAAT 57.357 34.783 0.00 0.00 0.00 1.89
3279 4924 9.737844 AAATGCCTTAAATATTTGACATTGGTT 57.262 25.926 11.05 0.00 0.00 3.67
3362 5007 8.201554 TGATGAATAAGTTCAGTTACTGCATC 57.798 34.615 7.61 11.77 46.75 3.91
3415 5060 6.208599 GTCCTTGTTATGACCTTCCATTTTCA 59.791 38.462 0.00 0.00 0.00 2.69
3471 5117 6.836007 TGCTTAGAGATAGAAGAGTGGAATGA 59.164 38.462 0.00 0.00 0.00 2.57
3500 5146 4.169059 TGTCACAATTCCTCATATGGGG 57.831 45.455 16.26 16.26 0.00 4.96
3557 5203 6.813152 TGTATGTTGTGATACTGTGATCTGTG 59.187 38.462 0.00 0.00 31.15 3.66
3622 5268 0.106918 TGTCGTTTGCCTCCCTGTTT 60.107 50.000 0.00 0.00 0.00 2.83
3644 5291 5.718607 TGTATGGATAGATGTGAGGGATCAG 59.281 44.000 0.00 0.00 0.00 2.90
3691 5338 4.971282 ACTATCTTCATTGTGATCCTCCCA 59.029 41.667 0.00 0.00 0.00 4.37
3715 5362 3.369756 TCGGCATCTTTTTGTACATCGTC 59.630 43.478 0.00 0.00 0.00 4.20
3761 5409 2.110835 TGCGCTGGAGCAGTGAAA 59.889 55.556 9.73 0.00 43.78 2.69
3838 5486 1.026718 CCCCAATGTTCGACTCCTGC 61.027 60.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.