Multiple sequence alignment - TraesCS7D01G471500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G471500 chr7D 100.000 3275 0 0 1 3275 585287882 585291156 0.000000e+00 6048.0
1 TraesCS7D01G471500 chr7D 82.985 1816 203 55 1048 2805 585177387 585179154 0.000000e+00 1544.0
2 TraesCS7D01G471500 chr7D 80.547 329 38 5 953 1281 36273466 36273164 2.540000e-56 230.0
3 TraesCS7D01G471500 chr7D 77.027 370 76 5 1878 2244 601589449 601589086 1.540000e-48 204.0
4 TraesCS7D01G471500 chr7D 76.962 395 58 17 2890 3272 585179284 585179657 9.270000e-46 195.0
5 TraesCS7D01G471500 chr7D 73.694 536 112 26 1736 2264 601462903 601462390 7.220000e-42 182.0
6 TraesCS7D01G471500 chr7D 90.909 66 6 0 1181 1246 29940068 29940003 4.500000e-14 89.8
7 TraesCS7D01G471500 chr7D 90.385 52 5 0 1893 1944 549745166 549745217 5.860000e-08 69.4
8 TraesCS7D01G471500 chr7A 90.474 2362 124 40 445 2773 675387306 675389599 0.000000e+00 3022.0
9 TraesCS7D01G471500 chr7A 95.158 475 19 1 2800 3274 675389683 675390153 0.000000e+00 747.0
10 TraesCS7D01G471500 chr7A 88.235 85 8 2 2183 2266 675289550 675289633 2.080000e-17 100.0
11 TraesCS7D01G471500 chr7A 95.122 41 2 0 1379 1419 693149619 693149579 7.590000e-07 65.8
12 TraesCS7D01G471500 chr7B 87.701 2301 168 50 935 3159 653883216 653885477 0.000000e+00 2575.0
13 TraesCS7D01G471500 chr7B 95.402 87 4 0 3188 3274 653885479 653885565 4.410000e-29 139.0
14 TraesCS7D01G471500 chr7B 73.924 395 75 23 1027 1407 680428861 680428481 2.050000e-27 134.0
15 TraesCS7D01G471500 chr1D 83.252 412 61 6 1 406 60313899 60314308 3.990000e-99 372.0
16 TraesCS7D01G471500 chr1D 82.436 353 58 4 3 353 144450534 144450884 4.110000e-79 305.0
17 TraesCS7D01G471500 chr6B 83.569 353 57 1 1 352 646143307 646143659 2.440000e-86 329.0
18 TraesCS7D01G471500 chr2A 82.609 345 49 11 1 339 88851828 88852167 8.890000e-76 294.0
19 TraesCS7D01G471500 chr3B 81.818 330 56 4 1 328 427990173 427989846 1.160000e-69 274.0
20 TraesCS7D01G471500 chr1B 80.737 353 64 4 3 353 193839366 193839716 4.160000e-69 272.0
21 TraesCS7D01G471500 chr1B 73.196 485 105 17 1735 2214 560019588 560019124 5.660000e-33 152.0
22 TraesCS7D01G471500 chr5B 84.043 282 42 3 1 280 235438969 235438689 5.390000e-68 268.0
23 TraesCS7D01G471500 chr5A 80.547 329 61 3 28 353 510547597 510547269 1.950000e-62 250.0
24 TraesCS7D01G471500 chr5D 79.224 361 67 8 1 357 402948315 402948671 9.080000e-61 244.0
25 TraesCS7D01G471500 chr2D 90.566 53 5 0 1892 1944 19022308 19022256 1.630000e-08 71.3
26 TraesCS7D01G471500 chr2D 91.304 46 4 0 1892 1937 18744710 18744755 2.730000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G471500 chr7D 585287882 585291156 3274 False 6048.0 6048 100.0000 1 3275 1 chr7D.!!$F2 3274
1 TraesCS7D01G471500 chr7D 585177387 585179657 2270 False 869.5 1544 79.9735 1048 3272 2 chr7D.!!$F3 2224
2 TraesCS7D01G471500 chr7A 675387306 675390153 2847 False 1884.5 3022 92.8160 445 3274 2 chr7A.!!$F2 2829
3 TraesCS7D01G471500 chr7B 653883216 653885565 2349 False 1357.0 2575 91.5515 935 3274 2 chr7B.!!$F1 2339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 411 0.107703 CGTTGGATGCCCTTAGCTCA 60.108 55.0 0.00 0.00 44.23 4.26 F
508 509 0.247460 CATCTCTGTCACGGAGCCAA 59.753 55.0 9.00 0.00 36.85 4.52 F
1712 1746 0.391927 TGGTTGTTTAGGCCCGATCG 60.392 55.0 8.51 8.51 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 1477 0.389391 CTGGTAGAGGCCGTGTATGG 59.611 60.0 0.0 0.0 0.0 2.74 R
1726 1760 0.530650 ATAATGTCTCCGGTGCTGCG 60.531 55.0 0.0 0.0 0.0 5.18 R
2587 2662 0.183731 ATTCCAAGGCCGAATCCCTC 59.816 55.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.887626 TCTACACATTATATGTAGCCGACA 57.112 37.500 5.83 0.00 46.12 4.35
30 31 2.125713 TGTAGCCGACATGTGCCG 60.126 61.111 1.15 0.54 31.20 5.69
31 32 3.564027 GTAGCCGACATGTGCCGC 61.564 66.667 1.15 1.11 0.00 6.53
32 33 4.830765 TAGCCGACATGTGCCGCC 62.831 66.667 1.15 0.00 0.00 6.13
37 38 2.819595 GACATGTGCCGCCGTGAT 60.820 61.111 1.15 0.00 0.00 3.06
38 39 1.520564 GACATGTGCCGCCGTGATA 60.521 57.895 1.15 0.00 0.00 2.15
39 40 0.880278 GACATGTGCCGCCGTGATAT 60.880 55.000 1.15 0.00 0.00 1.63
40 41 0.391228 ACATGTGCCGCCGTGATATA 59.609 50.000 0.00 0.00 0.00 0.86
41 42 0.790207 CATGTGCCGCCGTGATATAC 59.210 55.000 0.00 0.00 0.00 1.47
42 43 0.320421 ATGTGCCGCCGTGATATACC 60.320 55.000 0.00 0.00 0.00 2.73
43 44 1.068417 GTGCCGCCGTGATATACCA 59.932 57.895 0.00 0.00 0.00 3.25
44 45 1.068417 TGCCGCCGTGATATACCAC 59.932 57.895 0.00 0.00 0.00 4.16
45 46 1.068417 GCCGCCGTGATATACCACA 59.932 57.895 0.00 0.00 36.89 4.17
46 47 0.944311 GCCGCCGTGATATACCACAG 60.944 60.000 0.00 0.00 36.89 3.66
47 48 0.319555 CCGCCGTGATATACCACAGG 60.320 60.000 0.00 1.15 36.89 4.00
48 49 0.387929 CGCCGTGATATACCACAGGT 59.612 55.000 0.00 0.00 40.16 4.00
49 50 1.602165 CGCCGTGATATACCACAGGTC 60.602 57.143 0.00 0.00 37.09 3.85
50 51 1.411246 GCCGTGATATACCACAGGTCA 59.589 52.381 0.00 0.00 37.09 4.02
51 52 2.545952 GCCGTGATATACCACAGGTCAG 60.546 54.545 0.00 0.00 37.09 3.51
52 53 2.956333 CCGTGATATACCACAGGTCAGA 59.044 50.000 0.00 0.00 37.09 3.27
53 54 3.004839 CCGTGATATACCACAGGTCAGAG 59.995 52.174 0.00 0.00 37.09 3.35
54 55 3.004839 CGTGATATACCACAGGTCAGAGG 59.995 52.174 0.00 0.00 37.09 3.69
55 56 3.322254 GTGATATACCACAGGTCAGAGGG 59.678 52.174 0.00 0.00 37.09 4.30
56 57 2.471815 TATACCACAGGTCAGAGGGG 57.528 55.000 0.00 0.00 37.09 4.79
57 58 0.983378 ATACCACAGGTCAGAGGGGC 60.983 60.000 0.00 0.00 37.09 5.80
58 59 4.087892 CCACAGGTCAGAGGGGCG 62.088 72.222 0.00 0.00 0.00 6.13
59 60 4.087892 CACAGGTCAGAGGGGCGG 62.088 72.222 0.00 0.00 0.00 6.13
64 65 4.115199 GTCAGAGGGGCGGCCATT 62.115 66.667 30.95 17.54 0.00 3.16
65 66 3.338250 TCAGAGGGGCGGCCATTT 61.338 61.111 30.95 16.34 0.00 2.32
66 67 1.998438 TCAGAGGGGCGGCCATTTA 60.998 57.895 30.95 9.45 0.00 1.40
67 68 1.823899 CAGAGGGGCGGCCATTTAC 60.824 63.158 30.95 11.33 0.00 2.01
68 69 2.900337 GAGGGGCGGCCATTTACG 60.900 66.667 30.95 0.00 0.00 3.18
69 70 3.692370 GAGGGGCGGCCATTTACGT 62.692 63.158 30.95 4.10 0.00 3.57
70 71 3.514362 GGGGCGGCCATTTACGTG 61.514 66.667 30.95 0.00 0.00 4.49
71 72 4.187810 GGGCGGCCATTTACGTGC 62.188 66.667 25.33 0.00 0.00 5.34
72 73 3.436055 GGCGGCCATTTACGTGCA 61.436 61.111 15.62 0.00 0.00 4.57
73 74 2.770589 GGCGGCCATTTACGTGCAT 61.771 57.895 15.62 0.00 0.00 3.96
74 75 1.440938 GGCGGCCATTTACGTGCATA 61.441 55.000 15.62 0.00 0.00 3.14
75 76 0.316689 GCGGCCATTTACGTGCATAC 60.317 55.000 2.24 0.00 0.00 2.39
76 77 1.010580 CGGCCATTTACGTGCATACA 58.989 50.000 2.24 0.00 0.00 2.29
77 78 1.267832 CGGCCATTTACGTGCATACAC 60.268 52.381 2.24 0.00 43.76 2.90
78 79 2.014128 GGCCATTTACGTGCATACACT 58.986 47.619 0.00 0.00 45.10 3.55
79 80 2.223249 GGCCATTTACGTGCATACACTG 60.223 50.000 0.00 0.00 45.10 3.66
91 92 2.915349 CATACACTGCTGGATGAAGCT 58.085 47.619 0.00 0.00 40.90 3.74
92 93 2.391616 TACACTGCTGGATGAAGCTG 57.608 50.000 0.00 2.05 43.90 4.24
93 94 0.689055 ACACTGCTGGATGAAGCTGA 59.311 50.000 9.63 0.00 42.84 4.26
94 95 1.072806 ACACTGCTGGATGAAGCTGAA 59.927 47.619 9.63 0.00 42.84 3.02
95 96 1.738350 CACTGCTGGATGAAGCTGAAG 59.262 52.381 9.63 0.00 42.84 3.02
96 97 1.627329 ACTGCTGGATGAAGCTGAAGA 59.373 47.619 9.63 0.00 42.84 2.87
97 98 2.281517 CTGCTGGATGAAGCTGAAGAG 58.718 52.381 0.00 0.00 42.84 2.85
98 99 1.065636 TGCTGGATGAAGCTGAAGAGG 60.066 52.381 0.00 0.00 43.90 3.69
99 100 1.209019 GCTGGATGAAGCTGAAGAGGA 59.791 52.381 0.00 0.00 40.20 3.71
100 101 2.355513 GCTGGATGAAGCTGAAGAGGAA 60.356 50.000 0.00 0.00 40.20 3.36
101 102 3.533547 CTGGATGAAGCTGAAGAGGAAG 58.466 50.000 0.00 0.00 0.00 3.46
102 103 2.909006 TGGATGAAGCTGAAGAGGAAGT 59.091 45.455 0.00 0.00 0.00 3.01
103 104 4.096681 TGGATGAAGCTGAAGAGGAAGTA 58.903 43.478 0.00 0.00 0.00 2.24
104 105 4.718774 TGGATGAAGCTGAAGAGGAAGTAT 59.281 41.667 0.00 0.00 0.00 2.12
105 106 5.055812 GGATGAAGCTGAAGAGGAAGTATG 58.944 45.833 0.00 0.00 0.00 2.39
106 107 5.396213 GGATGAAGCTGAAGAGGAAGTATGT 60.396 44.000 0.00 0.00 0.00 2.29
107 108 4.825422 TGAAGCTGAAGAGGAAGTATGTG 58.175 43.478 0.00 0.00 0.00 3.21
108 109 4.284490 TGAAGCTGAAGAGGAAGTATGTGT 59.716 41.667 0.00 0.00 0.00 3.72
109 110 4.199432 AGCTGAAGAGGAAGTATGTGTG 57.801 45.455 0.00 0.00 0.00 3.82
110 111 3.055530 AGCTGAAGAGGAAGTATGTGTGG 60.056 47.826 0.00 0.00 0.00 4.17
111 112 3.866651 CTGAAGAGGAAGTATGTGTGGG 58.133 50.000 0.00 0.00 0.00 4.61
112 113 3.515502 CTGAAGAGGAAGTATGTGTGGGA 59.484 47.826 0.00 0.00 0.00 4.37
113 114 3.515502 TGAAGAGGAAGTATGTGTGGGAG 59.484 47.826 0.00 0.00 0.00 4.30
114 115 2.472029 AGAGGAAGTATGTGTGGGAGG 58.528 52.381 0.00 0.00 0.00 4.30
115 116 2.044492 AGAGGAAGTATGTGTGGGAGGA 59.956 50.000 0.00 0.00 0.00 3.71
116 117 3.041946 GAGGAAGTATGTGTGGGAGGAT 58.958 50.000 0.00 0.00 0.00 3.24
117 118 4.078571 AGAGGAAGTATGTGTGGGAGGATA 60.079 45.833 0.00 0.00 0.00 2.59
118 119 4.832492 AGGAAGTATGTGTGGGAGGATAT 58.168 43.478 0.00 0.00 0.00 1.63
119 120 4.594920 AGGAAGTATGTGTGGGAGGATATG 59.405 45.833 0.00 0.00 0.00 1.78
120 121 4.593206 GGAAGTATGTGTGGGAGGATATGA 59.407 45.833 0.00 0.00 0.00 2.15
121 122 5.249393 GGAAGTATGTGTGGGAGGATATGAT 59.751 44.000 0.00 0.00 0.00 2.45
122 123 6.365970 AAGTATGTGTGGGAGGATATGATC 57.634 41.667 0.00 0.00 0.00 2.92
161 162 3.801114 TGGACATCCACAATCTAGTCG 57.199 47.619 0.00 0.00 42.01 4.18
162 163 3.361786 TGGACATCCACAATCTAGTCGA 58.638 45.455 0.00 0.00 42.01 4.20
163 164 3.767131 TGGACATCCACAATCTAGTCGAA 59.233 43.478 0.00 0.00 42.01 3.71
164 165 4.142160 TGGACATCCACAATCTAGTCGAAG 60.142 45.833 0.00 0.00 42.01 3.79
165 166 4.142138 GGACATCCACAATCTAGTCGAAGT 60.142 45.833 0.00 0.00 35.64 3.01
166 167 5.407407 ACATCCACAATCTAGTCGAAGTT 57.593 39.130 0.00 0.00 0.00 2.66
167 168 6.405508 GGACATCCACAATCTAGTCGAAGTTA 60.406 42.308 0.00 0.00 35.64 2.24
168 169 6.931838 ACATCCACAATCTAGTCGAAGTTAA 58.068 36.000 0.00 0.00 0.00 2.01
169 170 7.036220 ACATCCACAATCTAGTCGAAGTTAAG 58.964 38.462 0.00 0.00 0.00 1.85
170 171 6.829229 TCCACAATCTAGTCGAAGTTAAGA 57.171 37.500 0.00 0.00 0.00 2.10
171 172 6.618811 TCCACAATCTAGTCGAAGTTAAGAC 58.381 40.000 0.00 3.48 37.63 3.01
174 175 7.599245 CCACAATCTAGTCGAAGTTAAGACTTT 59.401 37.037 15.82 5.20 45.88 2.66
175 176 8.428536 CACAATCTAGTCGAAGTTAAGACTTTG 58.571 37.037 15.82 15.52 45.88 2.77
176 177 8.142551 ACAATCTAGTCGAAGTTAAGACTTTGT 58.857 33.333 15.82 15.98 45.88 2.83
177 178 8.979574 CAATCTAGTCGAAGTTAAGACTTTGTT 58.020 33.333 15.82 7.98 45.88 2.83
178 179 7.925703 TCTAGTCGAAGTTAAGACTTTGTTG 57.074 36.000 15.82 5.59 45.88 3.33
179 180 7.486647 TCTAGTCGAAGTTAAGACTTTGTTGT 58.513 34.615 15.82 0.00 45.88 3.32
180 181 8.623903 TCTAGTCGAAGTTAAGACTTTGTTGTA 58.376 33.333 15.82 0.13 45.88 2.41
181 182 7.460751 AGTCGAAGTTAAGACTTTGTTGTAC 57.539 36.000 7.45 0.00 45.88 2.90
182 183 7.263496 AGTCGAAGTTAAGACTTTGTTGTACT 58.737 34.615 7.45 1.35 45.88 2.73
183 184 8.408601 AGTCGAAGTTAAGACTTTGTTGTACTA 58.591 33.333 7.45 0.00 45.88 1.82
184 185 8.689069 GTCGAAGTTAAGACTTTGTTGTACTAG 58.311 37.037 0.00 0.00 45.88 2.57
185 186 8.623903 TCGAAGTTAAGACTTTGTTGTACTAGA 58.376 33.333 0.00 0.00 45.88 2.43
186 187 9.241317 CGAAGTTAAGACTTTGTTGTACTAGAA 57.759 33.333 0.00 0.00 45.88 2.10
199 200 8.909708 TGTTGTACTAGAATTAATTTGCATGC 57.090 30.769 11.82 11.82 0.00 4.06
200 201 8.739039 TGTTGTACTAGAATTAATTTGCATGCT 58.261 29.630 20.33 0.00 0.00 3.79
206 207 8.906867 ACTAGAATTAATTTGCATGCTATGTGT 58.093 29.630 20.33 1.93 0.00 3.72
207 208 9.390795 CTAGAATTAATTTGCATGCTATGTGTC 57.609 33.333 20.33 6.95 0.00 3.67
208 209 7.774134 AGAATTAATTTGCATGCTATGTGTCA 58.226 30.769 20.33 0.00 0.00 3.58
209 210 8.418662 AGAATTAATTTGCATGCTATGTGTCAT 58.581 29.630 20.33 0.00 0.00 3.06
210 211 7.940178 ATTAATTTGCATGCTATGTGTCATG 57.060 32.000 20.33 0.00 42.08 3.07
211 212 5.585820 AATTTGCATGCTATGTGTCATGA 57.414 34.783 20.33 0.00 41.82 3.07
212 213 5.784578 ATTTGCATGCTATGTGTCATGAT 57.215 34.783 20.33 0.00 41.82 2.45
213 214 5.585820 TTTGCATGCTATGTGTCATGATT 57.414 34.783 20.33 0.00 41.82 2.57
214 215 5.585820 TTGCATGCTATGTGTCATGATTT 57.414 34.783 20.33 0.00 41.82 2.17
215 216 6.696441 TTGCATGCTATGTGTCATGATTTA 57.304 33.333 20.33 0.00 41.82 1.40
216 217 6.887626 TGCATGCTATGTGTCATGATTTAT 57.112 33.333 20.33 0.00 41.82 1.40
217 218 6.674066 TGCATGCTATGTGTCATGATTTATG 58.326 36.000 20.33 0.00 41.82 1.90
218 219 6.263617 TGCATGCTATGTGTCATGATTTATGT 59.736 34.615 20.33 0.00 41.82 2.29
219 220 7.143340 GCATGCTATGTGTCATGATTTATGTT 58.857 34.615 11.37 0.00 41.82 2.71
220 221 8.291740 GCATGCTATGTGTCATGATTTATGTTA 58.708 33.333 11.37 0.00 41.82 2.41
235 236 9.337396 TGATTTATGTTATTTTCTATCCGCACT 57.663 29.630 0.00 0.00 0.00 4.40
238 239 9.781834 TTTATGTTATTTTCTATCCGCACTTTG 57.218 29.630 0.00 0.00 0.00 2.77
239 240 7.624360 ATGTTATTTTCTATCCGCACTTTGA 57.376 32.000 0.00 0.00 0.00 2.69
240 241 7.624360 TGTTATTTTCTATCCGCACTTTGAT 57.376 32.000 0.00 0.00 0.00 2.57
241 242 8.050778 TGTTATTTTCTATCCGCACTTTGATT 57.949 30.769 0.00 0.00 0.00 2.57
242 243 9.168451 TGTTATTTTCTATCCGCACTTTGATTA 57.832 29.630 0.00 0.00 0.00 1.75
243 244 9.997482 GTTATTTTCTATCCGCACTTTGATTAA 57.003 29.630 0.00 0.00 0.00 1.40
248 249 7.812309 TCTATCCGCACTTTGATTAATATCG 57.188 36.000 0.00 0.00 33.23 2.92
249 250 7.599171 TCTATCCGCACTTTGATTAATATCGA 58.401 34.615 0.00 0.00 33.23 3.59
250 251 5.900339 TCCGCACTTTGATTAATATCGAC 57.100 39.130 0.00 0.00 33.23 4.20
251 252 4.748102 TCCGCACTTTGATTAATATCGACC 59.252 41.667 0.00 0.00 33.23 4.79
252 253 4.750098 CCGCACTTTGATTAATATCGACCT 59.250 41.667 0.00 0.00 33.23 3.85
253 254 5.333339 CCGCACTTTGATTAATATCGACCTG 60.333 44.000 0.00 0.00 33.23 4.00
254 255 5.234329 CGCACTTTGATTAATATCGACCTGT 59.766 40.000 0.00 0.00 33.23 4.00
255 256 6.238103 CGCACTTTGATTAATATCGACCTGTT 60.238 38.462 0.00 0.00 33.23 3.16
256 257 7.472543 GCACTTTGATTAATATCGACCTGTTT 58.527 34.615 0.00 0.00 33.23 2.83
257 258 8.609176 GCACTTTGATTAATATCGACCTGTTTA 58.391 33.333 0.00 0.00 33.23 2.01
258 259 9.916397 CACTTTGATTAATATCGACCTGTTTAC 57.084 33.333 0.00 0.00 33.23 2.01
259 260 9.661563 ACTTTGATTAATATCGACCTGTTTACA 57.338 29.630 0.00 0.00 33.23 2.41
262 263 9.607988 TTGATTAATATCGACCTGTTTACATGT 57.392 29.630 2.69 2.69 33.23 3.21
268 269 9.607988 AATATCGACCTGTTTACATGTATTTCA 57.392 29.630 6.36 5.81 0.00 2.69
269 270 9.778741 ATATCGACCTGTTTACATGTATTTCAT 57.221 29.630 6.36 0.00 37.22 2.57
270 271 7.534085 TCGACCTGTTTACATGTATTTCATC 57.466 36.000 6.36 0.60 34.09 2.92
271 272 6.537301 TCGACCTGTTTACATGTATTTCATCC 59.463 38.462 6.36 0.00 34.09 3.51
272 273 6.509517 CGACCTGTTTACATGTATTTCATCCG 60.510 42.308 6.36 3.24 34.09 4.18
273 274 5.588648 ACCTGTTTACATGTATTTCATCCGG 59.411 40.000 6.36 0.00 34.09 5.14
274 275 5.588648 CCTGTTTACATGTATTTCATCCGGT 59.411 40.000 6.36 0.00 34.09 5.28
275 276 6.094881 CCTGTTTACATGTATTTCATCCGGTT 59.905 38.462 6.36 0.00 34.09 4.44
276 277 7.281324 CCTGTTTACATGTATTTCATCCGGTTA 59.719 37.037 6.36 0.00 34.09 2.85
277 278 8.563123 TGTTTACATGTATTTCATCCGGTTAA 57.437 30.769 6.36 0.00 34.09 2.01
278 279 9.179909 TGTTTACATGTATTTCATCCGGTTAAT 57.820 29.630 6.36 0.00 34.09 1.40
286 287 9.522804 TGTATTTCATCCGGTTAATTAAAATGC 57.477 29.630 0.00 4.26 0.00 3.56
287 288 9.522804 GTATTTCATCCGGTTAATTAAAATGCA 57.477 29.630 0.00 0.00 0.00 3.96
288 289 8.647143 ATTTCATCCGGTTAATTAAAATGCAG 57.353 30.769 0.00 0.00 0.00 4.41
289 290 6.767524 TCATCCGGTTAATTAAAATGCAGT 57.232 33.333 0.00 0.00 0.00 4.40
290 291 7.164230 TCATCCGGTTAATTAAAATGCAGTT 57.836 32.000 0.00 0.00 0.00 3.16
291 292 7.607250 TCATCCGGTTAATTAAAATGCAGTTT 58.393 30.769 17.11 17.11 0.00 2.66
292 293 7.543868 TCATCCGGTTAATTAAAATGCAGTTTG 59.456 33.333 21.57 2.63 0.00 2.93
293 294 6.982852 TCCGGTTAATTAAAATGCAGTTTGA 58.017 32.000 21.57 14.32 0.00 2.69
294 295 7.434492 TCCGGTTAATTAAAATGCAGTTTGAA 58.566 30.769 21.57 11.95 0.00 2.69
295 296 7.926555 TCCGGTTAATTAAAATGCAGTTTGAAA 59.073 29.630 21.57 9.64 0.00 2.69
296 297 8.716909 CCGGTTAATTAAAATGCAGTTTGAAAT 58.283 29.630 21.57 11.49 0.00 2.17
297 298 9.527566 CGGTTAATTAAAATGCAGTTTGAAATG 57.472 29.630 21.57 0.00 0.00 2.32
303 304 5.766702 AAATGCAGTTTGAAATGTATGCG 57.233 34.783 0.00 0.00 36.47 4.73
304 305 4.700268 ATGCAGTTTGAAATGTATGCGA 57.300 36.364 0.00 0.00 36.47 5.10
305 306 4.700268 TGCAGTTTGAAATGTATGCGAT 57.300 36.364 0.00 0.00 36.47 4.58
306 307 5.058149 TGCAGTTTGAAATGTATGCGATT 57.942 34.783 0.00 0.00 36.47 3.34
307 308 6.188400 TGCAGTTTGAAATGTATGCGATTA 57.812 33.333 0.00 0.00 36.47 1.75
308 309 6.616017 TGCAGTTTGAAATGTATGCGATTAA 58.384 32.000 0.00 0.00 36.47 1.40
309 310 7.257003 TGCAGTTTGAAATGTATGCGATTAAT 58.743 30.769 0.00 0.00 36.47 1.40
310 311 7.220491 TGCAGTTTGAAATGTATGCGATTAATG 59.780 33.333 0.00 0.00 36.47 1.90
311 312 7.220683 GCAGTTTGAAATGTATGCGATTAATGT 59.779 33.333 0.00 0.00 0.00 2.71
312 313 9.075519 CAGTTTGAAATGTATGCGATTAATGTT 57.924 29.630 0.00 0.00 0.00 2.71
318 319 9.546909 GAAATGTATGCGATTAATGTTAGATGG 57.453 33.333 0.00 0.00 0.00 3.51
319 320 8.621532 AATGTATGCGATTAATGTTAGATGGT 57.378 30.769 0.00 0.00 0.00 3.55
320 321 8.621532 ATGTATGCGATTAATGTTAGATGGTT 57.378 30.769 0.00 0.00 0.00 3.67
321 322 7.860613 TGTATGCGATTAATGTTAGATGGTTG 58.139 34.615 0.00 0.00 0.00 3.77
322 323 5.168526 TGCGATTAATGTTAGATGGTTGC 57.831 39.130 0.00 0.00 0.00 4.17
323 324 4.036262 TGCGATTAATGTTAGATGGTTGCC 59.964 41.667 0.00 0.00 0.00 4.52
324 325 4.275936 GCGATTAATGTTAGATGGTTGCCT 59.724 41.667 0.00 0.00 0.00 4.75
325 326 5.560953 GCGATTAATGTTAGATGGTTGCCTC 60.561 44.000 0.00 0.00 0.00 4.70
326 327 5.049405 CGATTAATGTTAGATGGTTGCCTCC 60.049 44.000 0.00 0.00 0.00 4.30
327 328 2.736670 ATGTTAGATGGTTGCCTCCC 57.263 50.000 0.00 0.00 0.00 4.30
328 329 1.367346 TGTTAGATGGTTGCCTCCCA 58.633 50.000 0.00 0.00 36.16 4.37
329 330 1.004277 TGTTAGATGGTTGCCTCCCAC 59.996 52.381 0.00 0.00 34.07 4.61
330 331 1.004277 GTTAGATGGTTGCCTCCCACA 59.996 52.381 0.00 0.00 34.07 4.17
331 332 0.618458 TAGATGGTTGCCTCCCACAC 59.382 55.000 0.00 0.00 34.07 3.82
332 333 1.678970 GATGGTTGCCTCCCACACC 60.679 63.158 0.00 0.00 34.07 4.16
333 334 3.224007 ATGGTTGCCTCCCACACCC 62.224 63.158 0.00 0.00 34.07 4.61
335 336 4.265056 GTTGCCTCCCACACCCGT 62.265 66.667 0.00 0.00 0.00 5.28
336 337 4.263572 TTGCCTCCCACACCCGTG 62.264 66.667 0.00 0.00 43.21 4.94
338 339 4.699522 GCCTCCCACACCCGTGTC 62.700 72.222 0.00 0.00 42.83 3.67
339 340 4.016706 CCTCCCACACCCGTGTCC 62.017 72.222 0.00 0.00 42.83 4.02
340 341 3.238497 CTCCCACACCCGTGTCCA 61.238 66.667 0.00 0.00 42.83 4.02
341 342 2.528127 TCCCACACCCGTGTCCAT 60.528 61.111 0.00 0.00 42.83 3.41
342 343 2.359850 CCCACACCCGTGTCCATG 60.360 66.667 0.00 0.00 42.83 3.66
343 344 2.359850 CCACACCCGTGTCCATGG 60.360 66.667 4.97 4.97 42.83 3.66
344 345 2.747022 CACACCCGTGTCCATGGA 59.253 61.111 11.44 11.44 42.83 3.41
345 346 1.671054 CACACCCGTGTCCATGGAC 60.671 63.158 33.97 33.97 42.83 4.02
346 347 1.841556 ACACCCGTGTCCATGGACT 60.842 57.895 37.92 20.20 44.80 3.85
347 348 1.375908 CACCCGTGTCCATGGACTG 60.376 63.158 37.92 30.05 44.80 3.51
349 350 2.592993 CCCGTGTCCATGGACTGGT 61.593 63.158 37.92 0.00 46.08 4.00
350 351 1.079127 CCGTGTCCATGGACTGGTC 60.079 63.158 37.92 25.15 46.08 4.02
361 362 1.804601 GGACTGGTCCCTTGTTTACG 58.195 55.000 8.48 0.00 43.94 3.18
362 363 1.345415 GGACTGGTCCCTTGTTTACGA 59.655 52.381 8.48 0.00 43.94 3.43
363 364 2.224354 GGACTGGTCCCTTGTTTACGAA 60.224 50.000 8.48 0.00 43.94 3.85
364 365 2.804527 GACTGGTCCCTTGTTTACGAAC 59.195 50.000 0.00 0.00 36.29 3.95
365 366 1.796459 CTGGTCCCTTGTTTACGAACG 59.204 52.381 0.00 0.00 38.65 3.95
366 367 1.150827 GGTCCCTTGTTTACGAACGG 58.849 55.000 0.00 0.00 38.65 4.44
367 368 1.270252 GGTCCCTTGTTTACGAACGGA 60.270 52.381 0.00 0.00 38.65 4.69
368 369 2.064014 GTCCCTTGTTTACGAACGGAG 58.936 52.381 0.00 0.00 38.65 4.63
369 370 1.001181 TCCCTTGTTTACGAACGGAGG 59.999 52.381 0.00 0.00 39.51 4.30
370 371 1.270465 CCCTTGTTTACGAACGGAGGT 60.270 52.381 0.00 0.00 38.79 3.85
371 372 1.796459 CCTTGTTTACGAACGGAGGTG 59.204 52.381 0.00 0.00 38.65 4.00
372 373 2.546373 CCTTGTTTACGAACGGAGGTGA 60.546 50.000 0.00 0.00 38.65 4.02
373 374 2.886862 TGTTTACGAACGGAGGTGAA 57.113 45.000 0.00 0.00 38.65 3.18
374 375 3.176552 TGTTTACGAACGGAGGTGAAA 57.823 42.857 0.00 0.00 38.65 2.69
375 376 3.125316 TGTTTACGAACGGAGGTGAAAG 58.875 45.455 0.00 0.00 38.65 2.62
376 377 2.443887 TTACGAACGGAGGTGAAAGG 57.556 50.000 0.00 0.00 0.00 3.11
377 378 1.331214 TACGAACGGAGGTGAAAGGT 58.669 50.000 0.00 0.00 0.00 3.50
378 379 0.466963 ACGAACGGAGGTGAAAGGTT 59.533 50.000 0.00 0.00 0.00 3.50
379 380 1.145803 CGAACGGAGGTGAAAGGTTC 58.854 55.000 0.00 0.00 34.99 3.62
380 381 1.270147 CGAACGGAGGTGAAAGGTTCT 60.270 52.381 0.00 0.00 35.91 3.01
381 382 2.805657 CGAACGGAGGTGAAAGGTTCTT 60.806 50.000 0.00 0.00 35.91 2.52
382 383 3.211865 GAACGGAGGTGAAAGGTTCTTT 58.788 45.455 0.00 0.00 35.36 2.52
383 384 3.292492 ACGGAGGTGAAAGGTTCTTTT 57.708 42.857 0.00 0.00 0.00 2.27
384 385 3.628008 ACGGAGGTGAAAGGTTCTTTTT 58.372 40.909 0.00 0.00 0.00 1.94
385 386 4.784177 ACGGAGGTGAAAGGTTCTTTTTA 58.216 39.130 0.00 0.00 0.00 1.52
386 387 4.820173 ACGGAGGTGAAAGGTTCTTTTTAG 59.180 41.667 0.00 0.00 0.00 1.85
387 388 4.820173 CGGAGGTGAAAGGTTCTTTTTAGT 59.180 41.667 0.00 0.00 0.00 2.24
388 389 5.298527 CGGAGGTGAAAGGTTCTTTTTAGTT 59.701 40.000 0.00 0.00 0.00 2.24
389 390 6.504398 GGAGGTGAAAGGTTCTTTTTAGTTG 58.496 40.000 0.00 0.00 0.00 3.16
390 391 5.902681 AGGTGAAAGGTTCTTTTTAGTTGC 58.097 37.500 0.00 0.00 0.00 4.17
391 392 5.047847 GGTGAAAGGTTCTTTTTAGTTGCC 58.952 41.667 0.00 0.00 0.00 4.52
392 393 4.738252 GTGAAAGGTTCTTTTTAGTTGCCG 59.262 41.667 0.00 0.00 0.00 5.69
393 394 4.399934 TGAAAGGTTCTTTTTAGTTGCCGT 59.600 37.500 0.00 0.00 0.00 5.68
394 395 4.994907 AAGGTTCTTTTTAGTTGCCGTT 57.005 36.364 0.00 0.00 0.00 4.44
395 396 4.301637 AGGTTCTTTTTAGTTGCCGTTG 57.698 40.909 0.00 0.00 0.00 4.10
396 397 3.067601 AGGTTCTTTTTAGTTGCCGTTGG 59.932 43.478 0.00 0.00 0.00 3.77
397 398 3.067040 GGTTCTTTTTAGTTGCCGTTGGA 59.933 43.478 0.00 0.00 0.00 3.53
398 399 4.261867 GGTTCTTTTTAGTTGCCGTTGGAT 60.262 41.667 0.00 0.00 0.00 3.41
399 400 4.497473 TCTTTTTAGTTGCCGTTGGATG 57.503 40.909 0.00 0.00 0.00 3.51
400 401 2.715737 TTTTAGTTGCCGTTGGATGC 57.284 45.000 0.00 0.00 0.00 3.91
401 402 0.885196 TTTAGTTGCCGTTGGATGCC 59.115 50.000 0.00 0.00 0.00 4.40
402 403 0.963355 TTAGTTGCCGTTGGATGCCC 60.963 55.000 0.00 0.00 0.00 5.36
403 404 1.847798 TAGTTGCCGTTGGATGCCCT 61.848 55.000 0.00 0.00 0.00 5.19
404 405 2.117206 TTGCCGTTGGATGCCCTT 59.883 55.556 0.00 0.00 0.00 3.95
405 406 0.963355 GTTGCCGTTGGATGCCCTTA 60.963 55.000 0.00 0.00 0.00 2.69
406 407 0.679640 TTGCCGTTGGATGCCCTTAG 60.680 55.000 0.00 0.00 0.00 2.18
407 408 2.481471 GCCGTTGGATGCCCTTAGC 61.481 63.158 0.00 0.00 44.14 3.09
408 409 1.224592 CCGTTGGATGCCCTTAGCT 59.775 57.895 0.00 0.00 44.23 3.32
409 410 0.815615 CCGTTGGATGCCCTTAGCTC 60.816 60.000 0.00 0.00 44.23 4.09
410 411 0.107703 CGTTGGATGCCCTTAGCTCA 60.108 55.000 0.00 0.00 44.23 4.26
411 412 1.475751 CGTTGGATGCCCTTAGCTCAT 60.476 52.381 0.00 0.00 44.23 2.90
412 413 2.659428 GTTGGATGCCCTTAGCTCATT 58.341 47.619 0.00 0.00 44.23 2.57
413 414 3.026694 GTTGGATGCCCTTAGCTCATTT 58.973 45.455 0.00 0.00 44.23 2.32
414 415 2.658285 TGGATGCCCTTAGCTCATTTG 58.342 47.619 0.00 0.00 44.23 2.32
415 416 2.025037 TGGATGCCCTTAGCTCATTTGT 60.025 45.455 0.00 0.00 44.23 2.83
416 417 3.201930 TGGATGCCCTTAGCTCATTTGTA 59.798 43.478 0.00 0.00 44.23 2.41
417 418 4.207165 GGATGCCCTTAGCTCATTTGTAA 58.793 43.478 0.00 0.00 44.23 2.41
418 419 4.644685 GGATGCCCTTAGCTCATTTGTAAA 59.355 41.667 0.00 0.00 44.23 2.01
419 420 5.302823 GGATGCCCTTAGCTCATTTGTAAAT 59.697 40.000 0.00 0.00 44.23 1.40
420 421 6.490040 GGATGCCCTTAGCTCATTTGTAAATA 59.510 38.462 0.00 0.00 44.23 1.40
421 422 7.014230 GGATGCCCTTAGCTCATTTGTAAATAA 59.986 37.037 0.00 0.00 44.23 1.40
422 423 7.710676 TGCCCTTAGCTCATTTGTAAATAAA 57.289 32.000 0.00 0.00 44.23 1.40
423 424 7.771183 TGCCCTTAGCTCATTTGTAAATAAAG 58.229 34.615 0.00 0.00 44.23 1.85
424 425 7.613801 TGCCCTTAGCTCATTTGTAAATAAAGA 59.386 33.333 0.00 0.00 44.23 2.52
425 426 8.466798 GCCCTTAGCTCATTTGTAAATAAAGAA 58.533 33.333 0.00 0.00 38.99 2.52
471 472 6.956202 TTCTACACTCCTATACAAGGCTAC 57.044 41.667 0.00 0.00 46.10 3.58
474 475 4.275810 ACACTCCTATACAAGGCTACGAA 58.724 43.478 0.00 0.00 46.10 3.85
476 477 3.635836 ACTCCTATACAAGGCTACGAACC 59.364 47.826 0.00 0.00 46.10 3.62
501 502 1.534805 CGTCCCATCATCTCTGTCACG 60.535 57.143 0.00 0.00 0.00 4.35
508 509 0.247460 CATCTCTGTCACGGAGCCAA 59.753 55.000 9.00 0.00 36.85 4.52
518 519 2.682856 TCACGGAGCCAATAAATGAAGC 59.317 45.455 0.00 0.00 0.00 3.86
529 530 9.627123 AGCCAATAAATGAAGCTGTACTAAATA 57.373 29.630 0.00 0.00 31.23 1.40
557 560 2.751166 AACTTCCATGTCCTGTCTCG 57.249 50.000 0.00 0.00 0.00 4.04
565 568 1.239347 TGTCCTGTCTCGTCTCACTG 58.761 55.000 0.00 0.00 0.00 3.66
606 609 2.113139 CCGTTTCCACTGGCCACT 59.887 61.111 0.00 0.00 0.00 4.00
607 610 2.260869 CCGTTTCCACTGGCCACTG 61.261 63.158 0.00 2.66 0.00 3.66
608 611 2.908073 CGTTTCCACTGGCCACTGC 61.908 63.158 0.00 0.00 0.00 4.40
609 612 2.594303 TTTCCACTGGCCACTGCG 60.594 61.111 0.00 0.00 38.85 5.18
619 622 4.694233 CCACTGCGCCTCAGCACT 62.694 66.667 4.18 0.00 46.76 4.40
753 756 0.865769 CTCAGCGCGTTTTACCTGTT 59.134 50.000 8.43 0.00 0.00 3.16
765 768 6.731164 CGTTTTACCTGTTTGTACCATCTTT 58.269 36.000 0.00 0.00 0.00 2.52
766 769 7.197703 CGTTTTACCTGTTTGTACCATCTTTT 58.802 34.615 0.00 0.00 0.00 2.27
775 778 5.843673 TTGTACCATCTTTTTGTTGAGCA 57.156 34.783 0.00 0.00 0.00 4.26
797 800 4.396522 AGAAAGACTGATTTGCTGCTTCT 58.603 39.130 0.00 0.00 0.00 2.85
883 886 1.439679 GCAAGGTAAACCCGTCTCTG 58.560 55.000 0.00 0.00 38.74 3.35
884 887 1.270678 GCAAGGTAAACCCGTCTCTGT 60.271 52.381 0.00 0.00 38.74 3.41
967 970 1.626825 TCTTGGGGAGTTTCTTACGGG 59.373 52.381 0.00 0.00 0.00 5.28
1032 1035 3.342926 AGGATGCCTGATAAGAGAGGT 57.657 47.619 0.00 0.00 29.57 3.85
1255 1258 4.473520 CCCTCCGTGCCGATGCTT 62.474 66.667 0.00 0.00 38.71 3.91
1458 1469 1.746615 GCGCTCCTCCTGCATCAAA 60.747 57.895 0.00 0.00 0.00 2.69
1466 1477 3.118482 TCCTCCTGCATCAAAGACATCTC 60.118 47.826 0.00 0.00 0.00 2.75
1708 1742 1.241315 CCACTGGTTGTTTAGGCCCG 61.241 60.000 0.00 0.00 0.00 6.13
1712 1746 0.391927 TGGTTGTTTAGGCCCGATCG 60.392 55.000 8.51 8.51 0.00 3.69
1713 1747 1.712018 GGTTGTTTAGGCCCGATCGC 61.712 60.000 10.32 0.00 0.00 4.58
1724 1758 1.598962 CCGATCGCATTCCTGGCAT 60.599 57.895 10.32 0.00 0.00 4.40
1726 1760 1.572085 CGATCGCATTCCTGGCATCC 61.572 60.000 0.26 0.00 0.00 3.51
1795 1829 0.329261 CTGGATGAGAAACCCTGCCA 59.671 55.000 0.00 0.00 0.00 4.92
1798 1835 0.804989 GATGAGAAACCCTGCCAACG 59.195 55.000 0.00 0.00 0.00 4.10
1802 1839 1.001633 GAGAAACCCTGCCAACGACTA 59.998 52.381 0.00 0.00 0.00 2.59
1805 1842 0.250166 AACCCTGCCAACGACTACAC 60.250 55.000 0.00 0.00 0.00 2.90
1845 1888 3.435186 GAGGGCACGCCTGCTTTC 61.435 66.667 8.20 2.62 43.66 2.62
1848 1891 3.435186 GGCACGCCTGCTTTCCTC 61.435 66.667 7.62 0.00 43.66 3.71
1851 1894 3.626924 ACGCCTGCTTTCCTCGGT 61.627 61.111 0.00 0.00 0.00 4.69
1950 1999 2.022764 TCAAGTACCGGATCGACGTA 57.977 50.000 9.46 0.00 0.00 3.57
2181 2233 3.965347 AGTATTGTATGGAGCTTACCGGT 59.035 43.478 13.98 13.98 0.00 5.28
2258 2310 1.618837 TGAGGACTTTCCGTTCTCCAG 59.381 52.381 0.00 0.00 46.10 3.86
2267 2319 0.809241 CCGTTCTCCAGAGAGCATGC 60.809 60.000 10.51 10.51 40.22 4.06
2347 2399 5.481824 CCTATCCTGTATGAGTCATGCCTTA 59.518 44.000 16.15 2.76 0.00 2.69
2355 2407 6.763135 TGTATGAGTCATGCCTTATGTTCTTC 59.237 38.462 16.15 0.00 38.01 2.87
2356 2408 5.164620 TGAGTCATGCCTTATGTTCTTCA 57.835 39.130 0.00 0.00 38.01 3.02
2368 2420 7.158021 CCTTATGTTCTTCACTCTTCTCAACT 58.842 38.462 0.00 0.00 0.00 3.16
2369 2421 8.307483 CCTTATGTTCTTCACTCTTCTCAACTA 58.693 37.037 0.00 0.00 0.00 2.24
2370 2422 9.134734 CTTATGTTCTTCACTCTTCTCAACTAC 57.865 37.037 0.00 0.00 0.00 2.73
2371 2423 6.716934 TGTTCTTCACTCTTCTCAACTACT 57.283 37.500 0.00 0.00 0.00 2.57
2372 2424 6.740110 TGTTCTTCACTCTTCTCAACTACTC 58.260 40.000 0.00 0.00 0.00 2.59
2373 2425 6.547880 TGTTCTTCACTCTTCTCAACTACTCT 59.452 38.462 0.00 0.00 0.00 3.24
2374 2426 6.811253 TCTTCACTCTTCTCAACTACTCTC 57.189 41.667 0.00 0.00 0.00 3.20
2375 2427 6.539173 TCTTCACTCTTCTCAACTACTCTCT 58.461 40.000 0.00 0.00 0.00 3.10
2376 2428 6.653320 TCTTCACTCTTCTCAACTACTCTCTC 59.347 42.308 0.00 0.00 0.00 3.20
2377 2429 5.250200 TCACTCTTCTCAACTACTCTCTCC 58.750 45.833 0.00 0.00 0.00 3.71
2378 2430 4.094294 CACTCTTCTCAACTACTCTCTCCG 59.906 50.000 0.00 0.00 0.00 4.63
2379 2431 4.258543 CTCTTCTCAACTACTCTCTCCGT 58.741 47.826 0.00 0.00 0.00 4.69
2380 2432 4.653868 TCTTCTCAACTACTCTCTCCGTT 58.346 43.478 0.00 0.00 0.00 4.44
2381 2433 4.696402 TCTTCTCAACTACTCTCTCCGTTC 59.304 45.833 0.00 0.00 0.00 3.95
2382 2434 3.345414 TCTCAACTACTCTCTCCGTTCC 58.655 50.000 0.00 0.00 0.00 3.62
2383 2435 2.424246 CTCAACTACTCTCTCCGTTCCC 59.576 54.545 0.00 0.00 0.00 3.97
2384 2436 2.168496 CAACTACTCTCTCCGTTCCCA 58.832 52.381 0.00 0.00 0.00 4.37
2385 2437 2.561419 CAACTACTCTCTCCGTTCCCAA 59.439 50.000 0.00 0.00 0.00 4.12
2386 2438 3.103080 ACTACTCTCTCCGTTCCCAAT 57.897 47.619 0.00 0.00 0.00 3.16
2387 2439 3.442076 ACTACTCTCTCCGTTCCCAATT 58.558 45.455 0.00 0.00 0.00 2.32
2388 2440 4.607239 ACTACTCTCTCCGTTCCCAATTA 58.393 43.478 0.00 0.00 0.00 1.40
2389 2441 3.889520 ACTCTCTCCGTTCCCAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
2390 2442 3.442076 ACTCTCTCCGTTCCCAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
2391 2443 3.447944 ACTCTCTCCGTTCCCAATTACTC 59.552 47.826 0.00 0.00 0.00 2.59
2392 2444 2.426024 TCTCTCCGTTCCCAATTACTCG 59.574 50.000 0.00 0.00 0.00 4.18
2393 2445 2.165845 CTCTCCGTTCCCAATTACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
2472 2542 6.377996 TGCTTATTATGATGCCTTGAACACTT 59.622 34.615 0.00 0.00 0.00 3.16
2542 2614 2.101582 ACTGTTTGCGCCCAACATTTAA 59.898 40.909 19.30 0.00 0.00 1.52
2547 2619 2.600731 TGCGCCCAACATTTAATTTCG 58.399 42.857 4.18 0.00 0.00 3.46
2558 2630 5.925907 ACATTTAATTTCGGTTTGCATTGC 58.074 33.333 0.46 0.46 0.00 3.56
2560 2632 5.588568 TTTAATTTCGGTTTGCATTGCTG 57.411 34.783 10.49 0.00 0.00 4.41
2605 2680 1.204786 TGAGGGATTCGGCCTTGGAA 61.205 55.000 0.00 0.00 0.00 3.53
2612 2687 0.695924 TTCGGCCTTGGAATCTTGGA 59.304 50.000 0.00 0.00 0.00 3.53
2614 2689 0.035056 CGGCCTTGGAATCTTGGACT 60.035 55.000 0.00 0.00 0.00 3.85
2619 2694 2.490903 CCTTGGAATCTTGGACTTGCTG 59.509 50.000 0.00 0.00 0.00 4.41
2626 2705 3.281727 TCTTGGACTTGCTGTTTGAGT 57.718 42.857 0.00 0.00 0.00 3.41
2638 2717 3.916776 GCTGTTTGAGTAAATGCTCTTGC 59.083 43.478 0.33 0.00 36.51 4.01
2665 2746 9.654417 CAGAAATGGCATTTTTAGTTTTTGAAG 57.346 29.630 25.02 1.99 31.47 3.02
2724 2805 8.503458 AGGCTATGTTTGCTGATCAATATATC 57.497 34.615 0.00 0.00 34.12 1.63
2985 3153 5.731694 CCAATTTGGTCCCTCGACTTCGA 62.732 52.174 7.31 0.68 38.26 3.71
3034 3202 2.686915 GCTTTCATGTTCAGGATCTGGG 59.313 50.000 0.00 0.00 31.51 4.45
3059 3227 5.220912 GCTTTTTGGGTAGAAACACGTTAGT 60.221 40.000 0.00 0.00 0.00 2.24
3061 3229 7.467131 GCTTTTTGGGTAGAAACACGTTAGTAA 60.467 37.037 0.00 0.00 0.00 2.24
3077 3253 5.233050 CGTTAGTAATGTGCTCTCTTGGATG 59.767 44.000 0.00 0.00 0.00 3.51
3085 3261 4.067896 GTGCTCTCTTGGATGAAGTTCAA 58.932 43.478 10.14 0.00 32.90 2.69
3109 3285 2.009042 GCTGGTTCTCCGGTTCATCTG 61.009 57.143 0.00 0.00 41.89 2.90
3253 3438 0.250553 TCCCGTGTGGACCAATCAAC 60.251 55.000 0.00 0.00 38.61 3.18
3254 3439 0.250727 CCCGTGTGGACCAATCAACT 60.251 55.000 0.00 0.00 37.49 3.16
3258 3443 4.119862 CCGTGTGGACCAATCAACTATAG 58.880 47.826 0.00 0.00 37.49 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.125713 CGGCACATGTCGGCTACA 60.126 61.111 15.92 0.00 43.86 2.74
14 15 3.564027 GCGGCACATGTCGGCTAC 61.564 66.667 8.11 7.64 44.35 3.58
20 21 0.880278 ATATCACGGCGGCACATGTC 60.880 55.000 13.24 0.00 0.00 3.06
21 22 0.391228 TATATCACGGCGGCACATGT 59.609 50.000 13.24 0.00 0.00 3.21
22 23 0.790207 GTATATCACGGCGGCACATG 59.210 55.000 13.24 3.99 0.00 3.21
23 24 0.320421 GGTATATCACGGCGGCACAT 60.320 55.000 13.24 1.48 0.00 3.21
24 25 1.068417 GGTATATCACGGCGGCACA 59.932 57.895 13.24 0.00 0.00 4.57
25 26 1.068417 TGGTATATCACGGCGGCAC 59.932 57.895 13.24 0.00 0.00 5.01
26 27 1.068417 GTGGTATATCACGGCGGCA 59.932 57.895 13.24 0.00 0.00 5.69
27 28 0.944311 CTGTGGTATATCACGGCGGC 60.944 60.000 11.98 0.00 40.31 6.53
28 29 0.319555 CCTGTGGTATATCACGGCGG 60.320 60.000 18.12 11.07 41.39 6.13
29 30 0.387929 ACCTGTGGTATATCACGGCG 59.612 55.000 18.12 13.71 41.39 6.46
30 31 1.411246 TGACCTGTGGTATATCACGGC 59.589 52.381 18.12 13.73 41.39 5.68
31 32 2.956333 TCTGACCTGTGGTATATCACGG 59.044 50.000 16.82 16.82 42.14 4.94
32 33 3.004839 CCTCTGACCTGTGGTATATCACG 59.995 52.174 11.45 6.36 40.31 4.35
33 34 3.322254 CCCTCTGACCTGTGGTATATCAC 59.678 52.174 9.31 9.31 35.25 3.06
34 35 3.576861 CCCTCTGACCTGTGGTATATCA 58.423 50.000 0.00 0.00 35.25 2.15
35 36 2.900546 CCCCTCTGACCTGTGGTATATC 59.099 54.545 0.00 0.00 35.25 1.63
36 37 2.977808 CCCCTCTGACCTGTGGTATAT 58.022 52.381 0.00 0.00 35.25 0.86
37 38 1.691482 GCCCCTCTGACCTGTGGTATA 60.691 57.143 0.00 0.00 35.25 1.47
38 39 0.983378 GCCCCTCTGACCTGTGGTAT 60.983 60.000 0.00 0.00 35.25 2.73
39 40 1.612442 GCCCCTCTGACCTGTGGTA 60.612 63.158 0.00 0.00 35.25 3.25
40 41 2.930562 GCCCCTCTGACCTGTGGT 60.931 66.667 0.00 0.00 39.44 4.16
41 42 4.087892 CGCCCCTCTGACCTGTGG 62.088 72.222 0.00 0.00 0.00 4.17
42 43 4.087892 CCGCCCCTCTGACCTGTG 62.088 72.222 0.00 0.00 0.00 3.66
47 48 2.265467 TAAATGGCCGCCCCTCTGAC 62.265 60.000 7.03 0.00 0.00 3.51
48 49 1.998438 TAAATGGCCGCCCCTCTGA 60.998 57.895 7.03 0.00 0.00 3.27
49 50 1.823899 GTAAATGGCCGCCCCTCTG 60.824 63.158 7.03 0.00 0.00 3.35
50 51 2.595655 GTAAATGGCCGCCCCTCT 59.404 61.111 7.03 0.00 0.00 3.69
51 52 2.900337 CGTAAATGGCCGCCCCTC 60.900 66.667 7.03 0.00 0.00 4.30
52 53 3.723922 ACGTAAATGGCCGCCCCT 61.724 61.111 7.03 0.00 0.00 4.79
53 54 3.514362 CACGTAAATGGCCGCCCC 61.514 66.667 7.03 0.00 0.00 5.80
54 55 4.187810 GCACGTAAATGGCCGCCC 62.188 66.667 7.03 0.00 0.00 6.13
55 56 1.440938 TATGCACGTAAATGGCCGCC 61.441 55.000 1.04 1.04 0.00 6.13
56 57 0.316689 GTATGCACGTAAATGGCCGC 60.317 55.000 0.00 0.00 0.00 6.53
57 58 1.010580 TGTATGCACGTAAATGGCCG 58.989 50.000 0.00 0.00 0.00 6.13
58 59 2.468532 GTGTATGCACGTAAATGGCC 57.531 50.000 0.00 0.00 35.75 5.36
71 72 2.612672 CAGCTTCATCCAGCAGTGTATG 59.387 50.000 0.00 0.00 42.84 2.39
72 73 2.502947 TCAGCTTCATCCAGCAGTGTAT 59.497 45.455 0.00 0.00 42.84 2.29
73 74 1.901833 TCAGCTTCATCCAGCAGTGTA 59.098 47.619 0.00 0.00 42.84 2.90
74 75 0.689055 TCAGCTTCATCCAGCAGTGT 59.311 50.000 0.00 0.00 42.84 3.55
75 76 1.738350 CTTCAGCTTCATCCAGCAGTG 59.262 52.381 0.00 0.00 42.84 3.66
76 77 1.627329 TCTTCAGCTTCATCCAGCAGT 59.373 47.619 0.00 0.00 42.84 4.40
77 78 2.281517 CTCTTCAGCTTCATCCAGCAG 58.718 52.381 0.00 0.00 42.84 4.24
78 79 1.065636 CCTCTTCAGCTTCATCCAGCA 60.066 52.381 0.00 0.00 42.84 4.41
79 80 1.209019 TCCTCTTCAGCTTCATCCAGC 59.791 52.381 0.00 0.00 40.44 4.85
80 81 3.055240 ACTTCCTCTTCAGCTTCATCCAG 60.055 47.826 0.00 0.00 0.00 3.86
81 82 2.909006 ACTTCCTCTTCAGCTTCATCCA 59.091 45.455 0.00 0.00 0.00 3.41
82 83 3.625649 ACTTCCTCTTCAGCTTCATCC 57.374 47.619 0.00 0.00 0.00 3.51
83 84 5.523188 CACATACTTCCTCTTCAGCTTCATC 59.477 44.000 0.00 0.00 0.00 2.92
84 85 5.046014 ACACATACTTCCTCTTCAGCTTCAT 60.046 40.000 0.00 0.00 0.00 2.57
85 86 4.284490 ACACATACTTCCTCTTCAGCTTCA 59.716 41.667 0.00 0.00 0.00 3.02
86 87 4.629200 CACACATACTTCCTCTTCAGCTTC 59.371 45.833 0.00 0.00 0.00 3.86
87 88 4.564406 CCACACATACTTCCTCTTCAGCTT 60.564 45.833 0.00 0.00 0.00 3.74
88 89 3.055530 CCACACATACTTCCTCTTCAGCT 60.056 47.826 0.00 0.00 0.00 4.24
89 90 3.265791 CCACACATACTTCCTCTTCAGC 58.734 50.000 0.00 0.00 0.00 4.26
90 91 3.515502 TCCCACACATACTTCCTCTTCAG 59.484 47.826 0.00 0.00 0.00 3.02
91 92 3.515502 CTCCCACACATACTTCCTCTTCA 59.484 47.826 0.00 0.00 0.00 3.02
92 93 3.118592 CCTCCCACACATACTTCCTCTTC 60.119 52.174 0.00 0.00 0.00 2.87
93 94 2.840651 CCTCCCACACATACTTCCTCTT 59.159 50.000 0.00 0.00 0.00 2.85
94 95 2.044492 TCCTCCCACACATACTTCCTCT 59.956 50.000 0.00 0.00 0.00 3.69
95 96 2.467880 TCCTCCCACACATACTTCCTC 58.532 52.381 0.00 0.00 0.00 3.71
96 97 2.642171 TCCTCCCACACATACTTCCT 57.358 50.000 0.00 0.00 0.00 3.36
97 98 4.593206 TCATATCCTCCCACACATACTTCC 59.407 45.833 0.00 0.00 0.00 3.46
98 99 5.808366 TCATATCCTCCCACACATACTTC 57.192 43.478 0.00 0.00 0.00 3.01
99 100 5.249393 GGATCATATCCTCCCACACATACTT 59.751 44.000 0.00 0.00 46.19 2.24
100 101 4.780021 GGATCATATCCTCCCACACATACT 59.220 45.833 0.00 0.00 46.19 2.12
101 102 5.091261 GGATCATATCCTCCCACACATAC 57.909 47.826 0.00 0.00 46.19 2.39
141 142 3.361786 TCGACTAGATTGTGGATGTCCA 58.638 45.455 0.00 0.00 45.30 4.02
142 143 4.142138 ACTTCGACTAGATTGTGGATGTCC 60.142 45.833 0.00 0.00 31.26 4.02
143 144 5.000012 ACTTCGACTAGATTGTGGATGTC 58.000 43.478 0.00 0.00 31.26 3.06
144 145 5.407407 AACTTCGACTAGATTGTGGATGT 57.593 39.130 0.00 0.00 35.67 3.06
145 146 7.221067 GTCTTAACTTCGACTAGATTGTGGATG 59.779 40.741 0.00 0.00 0.00 3.51
146 147 7.122948 AGTCTTAACTTCGACTAGATTGTGGAT 59.877 37.037 0.00 0.00 38.63 3.41
147 148 6.433404 AGTCTTAACTTCGACTAGATTGTGGA 59.567 38.462 0.00 0.00 38.63 4.02
148 149 6.622549 AGTCTTAACTTCGACTAGATTGTGG 58.377 40.000 0.00 0.00 38.63 4.17
149 150 8.428536 CAAAGTCTTAACTTCGACTAGATTGTG 58.571 37.037 0.00 0.00 45.07 3.33
150 151 8.142551 ACAAAGTCTTAACTTCGACTAGATTGT 58.857 33.333 0.00 0.00 45.07 2.71
151 152 8.522178 ACAAAGTCTTAACTTCGACTAGATTG 57.478 34.615 0.00 0.00 45.07 2.67
152 153 8.979574 CAACAAAGTCTTAACTTCGACTAGATT 58.020 33.333 0.00 0.00 45.07 2.40
153 154 8.142551 ACAACAAAGTCTTAACTTCGACTAGAT 58.857 33.333 0.00 0.00 45.07 1.98
154 155 7.486647 ACAACAAAGTCTTAACTTCGACTAGA 58.513 34.615 0.00 0.00 45.07 2.43
155 156 7.695869 ACAACAAAGTCTTAACTTCGACTAG 57.304 36.000 0.00 0.00 45.07 2.57
156 157 8.408601 AGTACAACAAAGTCTTAACTTCGACTA 58.591 33.333 0.00 0.00 45.07 2.59
157 158 7.263496 AGTACAACAAAGTCTTAACTTCGACT 58.737 34.615 0.00 0.00 45.07 4.18
158 159 7.460751 AGTACAACAAAGTCTTAACTTCGAC 57.539 36.000 0.00 0.00 45.07 4.20
159 160 8.623903 TCTAGTACAACAAAGTCTTAACTTCGA 58.376 33.333 0.00 0.00 45.07 3.71
160 161 8.792831 TCTAGTACAACAAAGTCTTAACTTCG 57.207 34.615 0.00 0.00 45.07 3.79
173 174 9.352784 GCATGCAAATTAATTCTAGTACAACAA 57.647 29.630 14.21 0.00 0.00 2.83
174 175 8.739039 AGCATGCAAATTAATTCTAGTACAACA 58.261 29.630 21.98 0.00 0.00 3.33
180 181 8.906867 ACACATAGCATGCAAATTAATTCTAGT 58.093 29.630 21.98 1.97 0.00 2.57
181 182 9.390795 GACACATAGCATGCAAATTAATTCTAG 57.609 33.333 21.98 1.36 0.00 2.43
182 183 8.901793 TGACACATAGCATGCAAATTAATTCTA 58.098 29.630 21.98 0.00 0.00 2.10
183 184 7.774134 TGACACATAGCATGCAAATTAATTCT 58.226 30.769 21.98 0.00 0.00 2.40
184 185 7.990541 TGACACATAGCATGCAAATTAATTC 57.009 32.000 21.98 6.84 0.00 2.17
185 186 8.198778 TCATGACACATAGCATGCAAATTAATT 58.801 29.630 21.98 0.00 41.18 1.40
186 187 7.718525 TCATGACACATAGCATGCAAATTAAT 58.281 30.769 21.98 0.00 41.18 1.40
187 188 7.098074 TCATGACACATAGCATGCAAATTAA 57.902 32.000 21.98 0.00 41.18 1.40
188 189 6.696441 TCATGACACATAGCATGCAAATTA 57.304 33.333 21.98 3.33 41.18 1.40
189 190 5.585820 TCATGACACATAGCATGCAAATT 57.414 34.783 21.98 0.61 41.18 1.82
190 191 5.784578 ATCATGACACATAGCATGCAAAT 57.215 34.783 21.98 10.20 41.18 2.32
191 192 5.585820 AATCATGACACATAGCATGCAAA 57.414 34.783 21.98 7.96 41.18 3.68
192 193 5.585820 AAATCATGACACATAGCATGCAA 57.414 34.783 21.98 0.00 41.18 4.08
193 194 6.263617 ACATAAATCATGACACATAGCATGCA 59.736 34.615 21.98 6.36 41.18 3.96
194 195 6.675026 ACATAAATCATGACACATAGCATGC 58.325 36.000 10.51 10.51 41.18 4.06
209 210 9.337396 AGTGCGGATAGAAAATAACATAAATCA 57.663 29.630 0.00 0.00 0.00 2.57
212 213 9.781834 CAAAGTGCGGATAGAAAATAACATAAA 57.218 29.630 0.00 0.00 0.00 1.40
213 214 9.168451 TCAAAGTGCGGATAGAAAATAACATAA 57.832 29.630 0.00 0.00 0.00 1.90
214 215 8.725405 TCAAAGTGCGGATAGAAAATAACATA 57.275 30.769 0.00 0.00 0.00 2.29
215 216 7.624360 TCAAAGTGCGGATAGAAAATAACAT 57.376 32.000 0.00 0.00 0.00 2.71
216 217 7.624360 ATCAAAGTGCGGATAGAAAATAACA 57.376 32.000 0.00 0.00 0.00 2.41
217 218 9.997482 TTAATCAAAGTGCGGATAGAAAATAAC 57.003 29.630 0.00 0.00 0.00 1.89
222 223 8.708742 CGATATTAATCAAAGTGCGGATAGAAA 58.291 33.333 0.00 0.00 31.93 2.52
223 224 8.085909 TCGATATTAATCAAAGTGCGGATAGAA 58.914 33.333 0.00 0.00 31.93 2.10
224 225 7.541091 GTCGATATTAATCAAAGTGCGGATAGA 59.459 37.037 0.00 0.00 31.93 1.98
225 226 7.201444 GGTCGATATTAATCAAAGTGCGGATAG 60.201 40.741 0.00 0.00 31.93 2.08
226 227 6.588756 GGTCGATATTAATCAAAGTGCGGATA 59.411 38.462 0.00 0.00 31.93 2.59
227 228 5.408604 GGTCGATATTAATCAAAGTGCGGAT 59.591 40.000 0.00 0.00 31.93 4.18
228 229 4.748102 GGTCGATATTAATCAAAGTGCGGA 59.252 41.667 0.00 0.00 31.93 5.54
229 230 4.750098 AGGTCGATATTAATCAAAGTGCGG 59.250 41.667 0.00 0.00 31.93 5.69
230 231 5.234329 ACAGGTCGATATTAATCAAAGTGCG 59.766 40.000 0.00 0.00 31.93 5.34
231 232 6.604735 ACAGGTCGATATTAATCAAAGTGC 57.395 37.500 0.00 0.00 31.93 4.40
232 233 9.916397 GTAAACAGGTCGATATTAATCAAAGTG 57.084 33.333 0.00 0.00 31.93 3.16
233 234 9.661563 TGTAAACAGGTCGATATTAATCAAAGT 57.338 29.630 0.00 0.00 31.93 2.66
236 237 9.607988 ACATGTAAACAGGTCGATATTAATCAA 57.392 29.630 0.00 0.00 35.87 2.57
242 243 9.607988 TGAAATACATGTAAACAGGTCGATATT 57.392 29.630 10.14 0.00 40.32 1.28
243 244 9.778741 ATGAAATACATGTAAACAGGTCGATAT 57.221 29.630 10.14 0.00 40.32 1.63
244 245 9.256477 GATGAAATACATGTAAACAGGTCGATA 57.744 33.333 10.14 0.00 40.32 2.92
245 246 7.226720 GGATGAAATACATGTAAACAGGTCGAT 59.773 37.037 10.14 0.00 40.32 3.59
246 247 6.537301 GGATGAAATACATGTAAACAGGTCGA 59.463 38.462 10.14 0.00 40.32 4.20
247 248 6.509517 CGGATGAAATACATGTAAACAGGTCG 60.510 42.308 10.14 6.39 40.32 4.79
248 249 6.238374 CCGGATGAAATACATGTAAACAGGTC 60.238 42.308 10.14 4.61 40.32 3.85
249 250 5.588648 CCGGATGAAATACATGTAAACAGGT 59.411 40.000 10.14 5.67 43.75 4.00
250 251 5.588648 ACCGGATGAAATACATGTAAACAGG 59.411 40.000 9.46 5.08 39.56 4.00
251 252 6.677781 ACCGGATGAAATACATGTAAACAG 57.322 37.500 9.46 2.22 39.56 3.16
252 253 8.563123 TTAACCGGATGAAATACATGTAAACA 57.437 30.769 9.46 10.49 39.56 2.83
260 261 9.522804 GCATTTTAATTAACCGGATGAAATACA 57.477 29.630 9.46 0.00 0.00 2.29
261 262 9.522804 TGCATTTTAATTAACCGGATGAAATAC 57.477 29.630 9.46 0.61 0.00 1.89
262 263 9.743057 CTGCATTTTAATTAACCGGATGAAATA 57.257 29.630 9.46 0.00 0.00 1.40
263 264 8.257306 ACTGCATTTTAATTAACCGGATGAAAT 58.743 29.630 9.46 0.00 0.00 2.17
264 265 7.607250 ACTGCATTTTAATTAACCGGATGAAA 58.393 30.769 9.46 0.00 0.00 2.69
265 266 7.164230 ACTGCATTTTAATTAACCGGATGAA 57.836 32.000 9.46 0.00 0.00 2.57
266 267 6.767524 ACTGCATTTTAATTAACCGGATGA 57.232 33.333 9.46 0.00 0.00 2.92
267 268 7.543868 TCAAACTGCATTTTAATTAACCGGATG 59.456 33.333 9.46 0.00 0.00 3.51
268 269 7.607250 TCAAACTGCATTTTAATTAACCGGAT 58.393 30.769 9.46 0.00 0.00 4.18
269 270 6.982852 TCAAACTGCATTTTAATTAACCGGA 58.017 32.000 9.46 0.00 0.00 5.14
270 271 7.644986 TTCAAACTGCATTTTAATTAACCGG 57.355 32.000 0.00 0.00 0.00 5.28
271 272 9.527566 CATTTCAAACTGCATTTTAATTAACCG 57.472 29.630 1.27 0.00 0.00 4.44
277 278 8.382130 CGCATACATTTCAAACTGCATTTTAAT 58.618 29.630 1.27 0.00 0.00 1.40
278 279 7.596621 TCGCATACATTTCAAACTGCATTTTAA 59.403 29.630 1.27 0.00 0.00 1.52
279 280 7.087007 TCGCATACATTTCAAACTGCATTTTA 58.913 30.769 1.27 0.00 0.00 1.52
280 281 5.925397 TCGCATACATTTCAAACTGCATTTT 59.075 32.000 0.00 0.00 0.00 1.82
281 282 5.468592 TCGCATACATTTCAAACTGCATTT 58.531 33.333 0.00 0.00 0.00 2.32
282 283 5.058149 TCGCATACATTTCAAACTGCATT 57.942 34.783 0.00 0.00 0.00 3.56
283 284 4.700268 TCGCATACATTTCAAACTGCAT 57.300 36.364 0.00 0.00 0.00 3.96
284 285 4.700268 ATCGCATACATTTCAAACTGCA 57.300 36.364 0.00 0.00 0.00 4.41
285 286 7.220683 ACATTAATCGCATACATTTCAAACTGC 59.779 33.333 0.00 0.00 0.00 4.40
286 287 8.619146 ACATTAATCGCATACATTTCAAACTG 57.381 30.769 0.00 0.00 0.00 3.16
292 293 9.546909 CCATCTAACATTAATCGCATACATTTC 57.453 33.333 0.00 0.00 0.00 2.17
293 294 9.066892 ACCATCTAACATTAATCGCATACATTT 57.933 29.630 0.00 0.00 0.00 2.32
294 295 8.621532 ACCATCTAACATTAATCGCATACATT 57.378 30.769 0.00 0.00 0.00 2.71
295 296 8.506437 CAACCATCTAACATTAATCGCATACAT 58.494 33.333 0.00 0.00 0.00 2.29
296 297 7.519809 GCAACCATCTAACATTAATCGCATACA 60.520 37.037 0.00 0.00 0.00 2.29
297 298 6.797033 GCAACCATCTAACATTAATCGCATAC 59.203 38.462 0.00 0.00 0.00 2.39
298 299 6.072728 GGCAACCATCTAACATTAATCGCATA 60.073 38.462 0.00 0.00 0.00 3.14
299 300 5.278463 GGCAACCATCTAACATTAATCGCAT 60.278 40.000 0.00 0.00 0.00 4.73
300 301 4.036262 GGCAACCATCTAACATTAATCGCA 59.964 41.667 0.00 0.00 0.00 5.10
301 302 4.275936 AGGCAACCATCTAACATTAATCGC 59.724 41.667 0.00 0.00 37.17 4.58
302 303 5.049405 GGAGGCAACCATCTAACATTAATCG 60.049 44.000 0.00 0.00 37.17 3.34
303 304 5.241728 GGGAGGCAACCATCTAACATTAATC 59.758 44.000 3.41 0.00 37.17 1.75
304 305 5.140454 GGGAGGCAACCATCTAACATTAAT 58.860 41.667 3.41 0.00 37.17 1.40
305 306 4.017958 TGGGAGGCAACCATCTAACATTAA 60.018 41.667 0.00 0.00 31.83 1.40
306 307 3.525609 TGGGAGGCAACCATCTAACATTA 59.474 43.478 0.00 0.00 31.83 1.90
307 308 2.311542 TGGGAGGCAACCATCTAACATT 59.688 45.455 0.00 0.00 31.83 2.71
308 309 1.922447 TGGGAGGCAACCATCTAACAT 59.078 47.619 0.00 0.00 31.83 2.71
309 310 1.004277 GTGGGAGGCAACCATCTAACA 59.996 52.381 3.45 0.00 40.70 2.41
310 311 1.004277 TGTGGGAGGCAACCATCTAAC 59.996 52.381 3.45 0.00 40.70 2.34
311 312 1.004277 GTGTGGGAGGCAACCATCTAA 59.996 52.381 3.45 0.00 40.70 2.10
312 313 0.618458 GTGTGGGAGGCAACCATCTA 59.382 55.000 3.45 0.00 40.70 1.98
313 314 1.380302 GTGTGGGAGGCAACCATCT 59.620 57.895 3.45 0.00 40.70 2.90
314 315 1.678970 GGTGTGGGAGGCAACCATC 60.679 63.158 3.45 1.39 40.70 3.51
315 316 2.440599 GGTGTGGGAGGCAACCAT 59.559 61.111 3.45 0.00 40.70 3.55
316 317 3.897122 GGGTGTGGGAGGCAACCA 61.897 66.667 0.00 0.00 42.98 3.67
318 319 4.265056 ACGGGTGTGGGAGGCAAC 62.265 66.667 0.00 0.00 0.00 4.17
319 320 4.263572 CACGGGTGTGGGAGGCAA 62.264 66.667 0.00 0.00 42.59 4.52
328 329 1.841556 AGTCCATGGACACGGGTGT 60.842 57.895 39.38 19.45 46.76 4.16
329 330 1.375908 CAGTCCATGGACACGGGTG 60.376 63.158 39.38 26.93 46.76 4.61
330 331 3.068881 CAGTCCATGGACACGGGT 58.931 61.111 39.38 20.86 46.76 5.28
341 342 6.781155 GTTCGTAAACAAGGGACCAGTCCA 62.781 50.000 18.28 0.00 42.08 4.02
342 343 4.355848 GTTCGTAAACAAGGGACCAGTCC 61.356 52.174 8.40 8.40 40.85 3.85
343 344 2.804527 GTTCGTAAACAAGGGACCAGTC 59.195 50.000 0.00 0.00 35.36 3.51
344 345 2.804212 CGTTCGTAAACAAGGGACCAGT 60.804 50.000 0.00 0.00 34.93 4.00
345 346 1.796459 CGTTCGTAAACAAGGGACCAG 59.204 52.381 0.00 0.00 34.93 4.00
346 347 1.540797 CCGTTCGTAAACAAGGGACCA 60.541 52.381 0.00 0.00 34.93 4.02
347 348 1.150827 CCGTTCGTAAACAAGGGACC 58.849 55.000 0.00 0.00 34.93 4.46
348 349 2.064014 CTCCGTTCGTAAACAAGGGAC 58.936 52.381 0.00 0.00 34.74 4.46
349 350 1.001181 CCTCCGTTCGTAAACAAGGGA 59.999 52.381 0.00 0.00 35.65 4.20
350 351 1.270465 ACCTCCGTTCGTAAACAAGGG 60.270 52.381 9.98 0.02 40.13 3.95
351 352 1.796459 CACCTCCGTTCGTAAACAAGG 59.204 52.381 5.59 5.59 40.96 3.61
352 353 2.746269 TCACCTCCGTTCGTAAACAAG 58.254 47.619 0.00 0.00 34.93 3.16
353 354 2.886862 TCACCTCCGTTCGTAAACAA 57.113 45.000 0.00 0.00 34.93 2.83
354 355 2.886862 TTCACCTCCGTTCGTAAACA 57.113 45.000 0.00 0.00 34.93 2.83
355 356 2.477754 CCTTTCACCTCCGTTCGTAAAC 59.522 50.000 0.00 0.00 0.00 2.01
356 357 2.102925 ACCTTTCACCTCCGTTCGTAAA 59.897 45.455 0.00 0.00 0.00 2.01
357 358 1.688197 ACCTTTCACCTCCGTTCGTAA 59.312 47.619 0.00 0.00 0.00 3.18
358 359 1.331214 ACCTTTCACCTCCGTTCGTA 58.669 50.000 0.00 0.00 0.00 3.43
359 360 0.466963 AACCTTTCACCTCCGTTCGT 59.533 50.000 0.00 0.00 0.00 3.85
360 361 1.145803 GAACCTTTCACCTCCGTTCG 58.854 55.000 0.00 0.00 0.00 3.95
361 362 2.545537 AGAACCTTTCACCTCCGTTC 57.454 50.000 0.00 0.00 34.40 3.95
362 363 3.292492 AAAGAACCTTTCACCTCCGTT 57.708 42.857 0.00 0.00 0.00 4.44
363 364 3.292492 AAAAGAACCTTTCACCTCCGT 57.708 42.857 0.00 0.00 0.00 4.69
364 365 4.820173 ACTAAAAAGAACCTTTCACCTCCG 59.180 41.667 0.00 0.00 0.00 4.63
365 366 6.504398 CAACTAAAAAGAACCTTTCACCTCC 58.496 40.000 0.00 0.00 0.00 4.30
366 367 5.977725 GCAACTAAAAAGAACCTTTCACCTC 59.022 40.000 0.00 0.00 0.00 3.85
367 368 5.163447 GGCAACTAAAAAGAACCTTTCACCT 60.163 40.000 0.00 0.00 0.00 4.00
368 369 5.047847 GGCAACTAAAAAGAACCTTTCACC 58.952 41.667 0.00 0.00 0.00 4.02
369 370 4.738252 CGGCAACTAAAAAGAACCTTTCAC 59.262 41.667 0.00 0.00 0.00 3.18
370 371 4.399934 ACGGCAACTAAAAAGAACCTTTCA 59.600 37.500 0.00 0.00 0.00 2.69
371 372 4.928601 ACGGCAACTAAAAAGAACCTTTC 58.071 39.130 0.00 0.00 0.00 2.62
372 373 4.994907 ACGGCAACTAAAAAGAACCTTT 57.005 36.364 0.00 0.00 0.00 3.11
373 374 4.440940 CCAACGGCAACTAAAAAGAACCTT 60.441 41.667 0.00 0.00 0.00 3.50
374 375 3.067601 CCAACGGCAACTAAAAAGAACCT 59.932 43.478 0.00 0.00 0.00 3.50
375 376 3.067040 TCCAACGGCAACTAAAAAGAACC 59.933 43.478 0.00 0.00 0.00 3.62
376 377 4.295857 TCCAACGGCAACTAAAAAGAAC 57.704 40.909 0.00 0.00 0.00 3.01
377 378 4.794655 GCATCCAACGGCAACTAAAAAGAA 60.795 41.667 0.00 0.00 0.00 2.52
378 379 3.305064 GCATCCAACGGCAACTAAAAAGA 60.305 43.478 0.00 0.00 0.00 2.52
379 380 2.986479 GCATCCAACGGCAACTAAAAAG 59.014 45.455 0.00 0.00 0.00 2.27
380 381 2.288518 GGCATCCAACGGCAACTAAAAA 60.289 45.455 0.00 0.00 0.00 1.94
381 382 1.271102 GGCATCCAACGGCAACTAAAA 59.729 47.619 0.00 0.00 0.00 1.52
382 383 0.885196 GGCATCCAACGGCAACTAAA 59.115 50.000 0.00 0.00 0.00 1.85
383 384 0.963355 GGGCATCCAACGGCAACTAA 60.963 55.000 0.00 0.00 0.00 2.24
384 385 1.377987 GGGCATCCAACGGCAACTA 60.378 57.895 0.00 0.00 0.00 2.24
385 386 2.676471 GGGCATCCAACGGCAACT 60.676 61.111 0.00 0.00 0.00 3.16
386 387 0.963355 TAAGGGCATCCAACGGCAAC 60.963 55.000 0.00 0.00 34.83 4.17
387 388 0.679640 CTAAGGGCATCCAACGGCAA 60.680 55.000 0.00 0.00 34.83 4.52
388 389 1.077787 CTAAGGGCATCCAACGGCA 60.078 57.895 0.00 0.00 34.83 5.69
389 390 2.481471 GCTAAGGGCATCCAACGGC 61.481 63.158 0.00 0.00 41.35 5.68
390 391 0.815615 GAGCTAAGGGCATCCAACGG 60.816 60.000 0.00 0.00 44.79 4.44
391 392 0.107703 TGAGCTAAGGGCATCCAACG 60.108 55.000 0.00 0.00 44.79 4.10
392 393 2.355010 ATGAGCTAAGGGCATCCAAC 57.645 50.000 0.00 0.00 44.79 3.77
393 394 3.025978 CAAATGAGCTAAGGGCATCCAA 58.974 45.455 0.00 0.00 44.79 3.53
394 395 2.025037 ACAAATGAGCTAAGGGCATCCA 60.025 45.455 0.00 0.00 44.79 3.41
395 396 2.659428 ACAAATGAGCTAAGGGCATCC 58.341 47.619 0.00 0.00 44.79 3.51
396 397 5.835113 TTTACAAATGAGCTAAGGGCATC 57.165 39.130 0.00 0.00 44.79 3.91
397 398 7.896383 TTATTTACAAATGAGCTAAGGGCAT 57.104 32.000 0.00 0.00 44.79 4.40
398 399 7.613801 TCTTTATTTACAAATGAGCTAAGGGCA 59.386 33.333 0.00 0.00 44.79 5.36
399 400 7.996385 TCTTTATTTACAAATGAGCTAAGGGC 58.004 34.615 0.00 0.00 42.19 5.19
430 431 9.551734 AGTGTAGAAAAATAGAGGTAACGTTTT 57.448 29.630 5.91 0.00 46.39 2.43
431 432 9.201127 GAGTGTAGAAAAATAGAGGTAACGTTT 57.799 33.333 5.91 0.00 46.39 3.60
432 433 7.816513 GGAGTGTAGAAAAATAGAGGTAACGTT 59.183 37.037 5.88 5.88 46.39 3.99
433 434 7.178097 AGGAGTGTAGAAAAATAGAGGTAACGT 59.822 37.037 0.00 0.00 46.39 3.99
434 435 7.545489 AGGAGTGTAGAAAAATAGAGGTAACG 58.455 38.462 0.00 0.00 46.39 3.18
438 439 9.710818 TGTATAGGAGTGTAGAAAAATAGAGGT 57.289 33.333 0.00 0.00 0.00 3.85
471 472 1.804326 GATGGGACGACACGGTTCG 60.804 63.158 6.40 6.40 44.87 3.95
474 475 0.970937 AGATGATGGGACGACACGGT 60.971 55.000 0.00 0.00 0.00 4.83
476 477 0.741326 AGAGATGATGGGACGACACG 59.259 55.000 0.00 0.00 0.00 4.49
501 502 4.884164 AGTACAGCTTCATTTATTGGCTCC 59.116 41.667 0.00 0.00 0.00 4.70
508 509 9.277783 CAGGCTATTTAGTACAGCTTCATTTAT 57.722 33.333 0.00 0.00 35.60 1.40
518 519 7.921745 GGAAGTTAGACAGGCTATTTAGTACAG 59.078 40.741 0.00 0.00 0.00 2.74
529 530 2.237392 GGACATGGAAGTTAGACAGGCT 59.763 50.000 0.00 0.00 0.00 4.58
557 560 1.527034 TGCTTTGATGGCAGTGAGAC 58.473 50.000 0.00 0.00 34.56 3.36
608 611 2.559840 CTTGCAAGTGCTGAGGCG 59.440 61.111 18.65 0.00 42.66 5.52
609 612 1.584380 CTCCTTGCAAGTGCTGAGGC 61.584 60.000 24.35 0.00 41.52 4.70
610 613 0.035881 TCTCCTTGCAAGTGCTGAGG 59.964 55.000 24.35 8.86 42.41 3.86
611 614 1.440708 CTCTCCTTGCAAGTGCTGAG 58.559 55.000 24.35 21.26 42.66 3.35
612 615 0.035881 CCTCTCCTTGCAAGTGCTGA 59.964 55.000 24.35 13.40 42.66 4.26
613 616 1.584380 GCCTCTCCTTGCAAGTGCTG 61.584 60.000 24.35 9.71 42.66 4.41
614 617 1.303155 GCCTCTCCTTGCAAGTGCT 60.303 57.895 24.35 0.00 42.66 4.40
615 618 1.584380 CTGCCTCTCCTTGCAAGTGC 61.584 60.000 24.35 17.44 36.98 4.40
616 619 1.584380 GCTGCCTCTCCTTGCAAGTG 61.584 60.000 24.35 16.38 36.98 3.16
617 620 1.303155 GCTGCCTCTCCTTGCAAGT 60.303 57.895 24.35 0.00 36.98 3.16
618 621 0.251354 TAGCTGCCTCTCCTTGCAAG 59.749 55.000 19.93 19.93 36.98 4.01
619 622 0.251354 CTAGCTGCCTCTCCTTGCAA 59.749 55.000 0.00 0.00 36.98 4.08
765 768 6.267817 CAAATCAGTCTTTCTGCTCAACAAA 58.732 36.000 0.00 0.00 43.32 2.83
766 769 5.734220 GCAAATCAGTCTTTCTGCTCAACAA 60.734 40.000 0.00 0.00 43.32 2.83
775 778 4.396522 AGAAGCAGCAAATCAGTCTTTCT 58.603 39.130 0.00 0.00 0.00 2.52
782 785 5.287226 ACTGAAAAAGAAGCAGCAAATCAG 58.713 37.500 0.00 0.00 38.14 2.90
864 867 1.270678 ACAGAGACGGGTTTACCTTGC 60.271 52.381 0.00 0.00 36.97 4.01
867 870 2.038164 GGAAACAGAGACGGGTTTACCT 59.962 50.000 0.00 0.00 37.35 3.08
883 886 1.001706 GGAACAAGTTGGCGAGGAAAC 60.002 52.381 7.96 0.00 0.00 2.78
884 887 1.314730 GGAACAAGTTGGCGAGGAAA 58.685 50.000 7.96 0.00 0.00 3.13
942 945 4.564821 CGTAAGAAACTCCCCAAGATGGAA 60.565 45.833 0.00 0.00 39.21 3.53
967 970 1.087501 CCTAAAAGGAGAAGCGGCAC 58.912 55.000 1.45 0.00 37.67 5.01
1020 1023 1.823295 GGCCGCACCTCTCTTATCA 59.177 57.895 0.00 0.00 34.51 2.15
1023 1026 2.678934 ACGGCCGCACCTCTCTTA 60.679 61.111 28.58 0.00 35.61 2.10
1223 1226 0.606604 GAGGGTGACGAAACTGGCTA 59.393 55.000 0.00 0.00 0.00 3.93
1458 1469 0.753262 GGCCGTGTATGGAGATGTCT 59.247 55.000 0.00 0.00 0.00 3.41
1466 1477 0.389391 CTGGTAGAGGCCGTGTATGG 59.611 60.000 0.00 0.00 0.00 2.74
1648 1667 1.225704 GTGAGGGCCAGCATAGCTT 59.774 57.895 6.18 0.00 36.40 3.74
1689 1720 1.241315 CGGGCCTAAACAACCAGTGG 61.241 60.000 7.91 7.91 0.00 4.00
1708 1742 1.572085 CGGATGCCAGGAATGCGATC 61.572 60.000 16.49 0.00 40.83 3.69
1712 1746 2.829914 TGCGGATGCCAGGAATGC 60.830 61.111 0.00 0.00 41.78 3.56
1713 1747 2.842256 GCTGCGGATGCCAGGAATG 61.842 63.158 0.00 0.00 41.78 2.67
1726 1760 0.530650 ATAATGTCTCCGGTGCTGCG 60.531 55.000 0.00 0.00 0.00 5.18
1764 1798 1.137675 CTCATCCAGCGGAATGTCTCA 59.862 52.381 1.44 0.00 34.34 3.27
1795 1829 2.367567 ACCTGTTCATGGTGTAGTCGTT 59.632 45.455 0.00 0.00 36.30 3.85
1798 1835 3.740115 ACAACCTGTTCATGGTGTAGTC 58.260 45.455 0.00 0.00 37.93 2.59
1802 1839 3.130340 GTCAAACAACCTGTTCATGGTGT 59.870 43.478 0.00 0.00 40.14 4.16
1805 1842 4.300803 CATGTCAAACAACCTGTTCATGG 58.699 43.478 9.92 0.00 40.14 3.66
1845 1888 2.478890 ATGAGCCGACGTACCGAGG 61.479 63.158 0.00 0.00 0.00 4.63
1848 1891 1.585521 GACATGAGCCGACGTACCG 60.586 63.158 0.00 0.00 0.00 4.02
1851 1894 0.599060 TGTTGACATGAGCCGACGTA 59.401 50.000 0.00 0.00 0.00 3.57
1890 1939 0.606401 AGTCCTGCATCACCCAAACG 60.606 55.000 0.00 0.00 0.00 3.60
1950 1999 2.288457 CCGTGACGCCTCTATCATTGAT 60.288 50.000 0.00 4.28 0.00 2.57
2079 2131 7.688372 AGACATGTTTATCATTAAAGCTGACG 58.312 34.615 0.00 0.00 34.09 4.35
2181 2233 0.972471 TGCTCTCTTGGAGGCGATGA 60.972 55.000 0.00 0.00 42.08 2.92
2258 2310 2.687700 TCTTCAGAAGGCATGCTCTC 57.312 50.000 18.92 14.00 0.00 3.20
2267 2319 5.428184 AACCCTGAACTATCTTCAGAAGG 57.572 43.478 10.42 7.48 46.57 3.46
2347 2399 7.232534 AGAGTAGTTGAGAAGAGTGAAGAACAT 59.767 37.037 0.00 0.00 0.00 2.71
2355 2407 4.094294 CGGAGAGAGTAGTTGAGAAGAGTG 59.906 50.000 0.00 0.00 0.00 3.51
2356 2408 4.258543 CGGAGAGAGTAGTTGAGAAGAGT 58.741 47.826 0.00 0.00 0.00 3.24
2368 2420 4.607239 AGTAATTGGGAACGGAGAGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
2369 2421 3.442076 AGTAATTGGGAACGGAGAGAGT 58.558 45.455 0.00 0.00 0.00 3.24
2370 2422 3.489398 CGAGTAATTGGGAACGGAGAGAG 60.489 52.174 0.00 0.00 0.00 3.20
2371 2423 2.426024 CGAGTAATTGGGAACGGAGAGA 59.574 50.000 0.00 0.00 0.00 3.10
2372 2424 2.165845 ACGAGTAATTGGGAACGGAGAG 59.834 50.000 0.00 0.00 0.00 3.20
2373 2425 2.173519 ACGAGTAATTGGGAACGGAGA 58.826 47.619 0.00 0.00 0.00 3.71
2374 2426 2.667473 ACGAGTAATTGGGAACGGAG 57.333 50.000 0.00 0.00 0.00 4.63
2375 2427 4.741321 ATAACGAGTAATTGGGAACGGA 57.259 40.909 0.00 0.00 0.00 4.69
2376 2428 6.044682 ACTAATAACGAGTAATTGGGAACGG 58.955 40.000 0.00 0.00 0.00 4.44
2377 2429 8.534778 GTTACTAATAACGAGTAATTGGGAACG 58.465 37.037 0.00 0.00 40.53 3.95
2378 2430 9.591792 AGTTACTAATAACGAGTAATTGGGAAC 57.408 33.333 0.00 0.00 44.69 3.62
2472 2542 9.890629 AGATACTCTTGTTCAGCACATTATAAA 57.109 29.630 0.00 0.00 34.43 1.40
2529 2601 3.224884 ACCGAAATTAAATGTTGGGCG 57.775 42.857 0.00 0.00 0.00 6.13
2542 2614 2.557924 TCTCAGCAATGCAAACCGAAAT 59.442 40.909 8.35 0.00 0.00 2.17
2547 2619 1.706443 GCTTCTCAGCAATGCAAACC 58.294 50.000 8.35 0.00 46.49 3.27
2587 2662 0.183731 ATTCCAAGGCCGAATCCCTC 59.816 55.000 0.00 0.00 0.00 4.30
2605 2680 3.825328 ACTCAAACAGCAAGTCCAAGAT 58.175 40.909 0.00 0.00 0.00 2.40
2612 2687 4.823989 AGAGCATTTACTCAAACAGCAAGT 59.176 37.500 0.00 0.00 39.26 3.16
2614 2689 5.522456 CAAGAGCATTTACTCAAACAGCAA 58.478 37.500 0.00 0.00 39.26 3.91
2619 2694 4.216257 TCTGGCAAGAGCATTTACTCAAAC 59.784 41.667 0.00 0.00 44.61 2.93
2626 2705 4.724074 CCATTTCTGGCAAGAGCATTTA 57.276 40.909 0.00 0.00 44.61 1.40
2638 2717 8.152309 TCAAAAACTAAAAATGCCATTTCTGG 57.848 30.769 2.61 0.00 46.17 3.86
2785 2867 6.763135 CCAGACACAAATACATACAGCTATGT 59.237 38.462 7.28 7.28 44.42 2.29
2795 2912 8.855110 TGAATTAACAACCAGACACAAATACAT 58.145 29.630 0.00 0.00 0.00 2.29
2977 3145 2.616376 ACAGGAGAGATGATCGAAGTCG 59.384 50.000 0.00 0.00 41.45 4.18
2985 3153 5.186021 ACGTAACAAAGACAGGAGAGATGAT 59.814 40.000 0.00 0.00 0.00 2.45
3034 3202 2.359848 ACGTGTTTCTACCCAAAAAGCC 59.640 45.455 0.00 0.00 0.00 4.35
3059 3227 5.426689 ACTTCATCCAAGAGAGCACATTA 57.573 39.130 0.00 0.00 35.82 1.90
3061 3229 3.996921 ACTTCATCCAAGAGAGCACAT 57.003 42.857 0.00 0.00 35.82 3.21
3077 3253 3.057946 GGAGAACCAGCACATTGAACTTC 60.058 47.826 0.00 0.00 35.97 3.01
3085 3261 0.321653 GAACCGGAGAACCAGCACAT 60.322 55.000 9.46 0.00 35.59 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.