Multiple sequence alignment - TraesCS7D01G470200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G470200 chr7D 100.000 7832 0 0 1 7832 583446185 583454016 0.000000e+00 14464.0
1 TraesCS7D01G470200 chr7D 93.716 366 18 3 4533 4894 502323037 502322673 1.920000e-150 544.0
2 TraesCS7D01G470200 chr7D 94.186 344 17 2 4533 4876 502332631 502332291 9.010000e-144 521.0
3 TraesCS7D01G470200 chr7D 93.931 346 19 2 4533 4876 560806810 560806465 9.010000e-144 521.0
4 TraesCS7D01G470200 chr7D 78.035 173 25 8 509 679 83454274 83454435 6.470000e-16 97.1
5 TraesCS7D01G470200 chr7A 96.545 2431 57 14 2534 4942 675073553 675075978 0.000000e+00 3999.0
6 TraesCS7D01G470200 chr7A 97.830 2028 30 8 193 2214 675071319 675073338 0.000000e+00 3489.0
7 TraesCS7D01G470200 chr7A 98.491 1060 13 2 6367 7425 675077511 675078568 0.000000e+00 1866.0
8 TraesCS7D01G470200 chr7A 98.236 907 11 2 5340 6243 675076604 675077508 0.000000e+00 1581.0
9 TraesCS7D01G470200 chr7A 97.406 424 4 2 7416 7832 675078762 675079185 0.000000e+00 715.0
10 TraesCS7D01G470200 chr7A 98.575 351 3 1 5000 5350 675075980 675076328 3.100000e-173 619.0
11 TraesCS7D01G470200 chr7A 97.664 214 5 0 2258 2471 675073336 675073549 1.240000e-97 368.0
12 TraesCS7D01G470200 chr7A 98.537 205 3 0 1 205 675071082 675071286 5.780000e-96 363.0
13 TraesCS7D01G470200 chr7A 100.000 33 0 0 2439 2471 232362152 232362184 2.360000e-05 62.1
14 TraesCS7D01G470200 chr6A 85.401 1459 162 29 694 2123 146525615 146524179 0.000000e+00 1467.0
15 TraesCS7D01G470200 chr6A 90.646 898 65 9 3587 4471 146523638 146522747 0.000000e+00 1175.0
16 TraesCS7D01G470200 chr6A 85.746 898 64 27 4982 5871 146522755 146521914 0.000000e+00 891.0
17 TraesCS7D01G470200 chr6A 85.977 599 57 19 257 846 146528724 146528144 4.020000e-172 616.0
18 TraesCS7D01G470200 chr6A 86.728 324 22 7 225 531 146529034 146528715 2.710000e-89 340.0
19 TraesCS7D01G470200 chr6A 80.519 462 52 17 6846 7300 146520617 146520187 3.530000e-83 320.0
20 TraesCS7D01G470200 chr6A 93.846 195 11 1 2988 3181 146524178 146523984 7.690000e-75 292.0
21 TraesCS7D01G470200 chr6A 90.187 214 12 4 1 205 146529301 146529088 3.600000e-68 270.0
22 TraesCS7D01G470200 chr6A 80.697 373 46 13 6482 6848 146521000 146520648 4.660000e-67 267.0
23 TraesCS7D01G470200 chr6A 100.000 62 0 0 2472 2533 338458185 338458124 1.790000e-21 115.0
24 TraesCS7D01G470200 chr6D 94.766 363 14 3 4533 4894 67155902 67155544 1.910000e-155 560.0
25 TraesCS7D01G470200 chr6D 93.388 363 20 3 4533 4894 200240649 200240290 1.160000e-147 534.0
26 TraesCS7D01G470200 chr6D 92.703 370 21 4 4530 4894 305821697 305822065 5.380000e-146 529.0
27 TraesCS7D01G470200 chr6D 100.000 62 0 0 2472 2533 108499332 108499393 1.790000e-21 115.0
28 TraesCS7D01G470200 chr6D 100.000 31 0 0 2441 2471 26706657 26706687 3.050000e-04 58.4
29 TraesCS7D01G470200 chr5D 92.183 371 23 3 4530 4894 56333799 56334169 3.240000e-143 520.0
30 TraesCS7D01G470200 chr5D 89.769 303 20 7 2534 2827 246308877 246308577 2.060000e-100 377.0
31 TraesCS7D01G470200 chr5D 100.000 28 0 0 821 848 324584024 324583997 1.400000e-02 52.8
32 TraesCS7D01G470200 chr7B 92.958 355 23 1 4530 4884 452865238 452865590 4.190000e-142 516.0
33 TraesCS7D01G470200 chr7B 90.196 306 17 9 2534 2828 616316862 616317165 3.430000e-103 387.0
34 TraesCS7D01G470200 chr7B 100.000 31 0 0 2441 2471 403790076 403790106 3.050000e-04 58.4
35 TraesCS7D01G470200 chr2B 93.201 353 21 2 4530 4881 199817070 199817420 4.190000e-142 516.0
36 TraesCS7D01G470200 chr2B 89.803 304 19 7 2534 2827 677341966 677342267 5.740000e-101 379.0
37 TraesCS7D01G470200 chr4D 90.260 308 18 8 2534 2831 483475869 483476174 7.370000e-105 392.0
38 TraesCS7D01G470200 chr4D 100.000 31 0 0 2441 2471 318884647 318884677 3.050000e-04 58.4
39 TraesCS7D01G470200 chr3D 90.132 304 20 4 2534 2828 325043181 325043483 3.430000e-103 387.0
40 TraesCS7D01G470200 chr3D 100.000 64 0 0 2472 2535 520163222 520163159 1.380000e-22 119.0
41 TraesCS7D01G470200 chr5B 90.099 303 19 5 2534 2827 339452347 339452047 4.430000e-102 383.0
42 TraesCS7D01G470200 chr5B 100.000 31 0 0 2441 2471 568832674 568832644 3.050000e-04 58.4
43 TraesCS7D01G470200 chr1D 89.803 304 21 7 2534 2829 310921356 310921657 1.590000e-101 381.0
44 TraesCS7D01G470200 chr1D 80.449 312 38 12 4164 4455 176386072 176386380 4.760000e-52 217.0
45 TraesCS7D01G470200 chr1D 100.000 62 0 0 2472 2533 350963605 350963544 1.790000e-21 115.0
46 TraesCS7D01G470200 chr1D 100.000 33 0 0 2439 2471 379732314 379732346 2.360000e-05 62.1
47 TraesCS7D01G470200 chr2D 89.068 311 21 10 2534 2834 111991456 111991149 2.670000e-99 374.0
48 TraesCS7D01G470200 chr1B 81.818 275 36 9 4164 4427 242737823 242738094 1.320000e-52 219.0
49 TraesCS7D01G470200 chr1A 76.136 264 39 15 4183 4427 232091874 232092132 4.970000e-22 117.0
50 TraesCS7D01G470200 chrUn 100.000 62 0 0 2472 2533 312172161 312172100 1.790000e-21 115.0
51 TraesCS7D01G470200 chrUn 100.000 62 0 0 2472 2533 438424919 438424980 1.790000e-21 115.0
52 TraesCS7D01G470200 chr6B 100.000 62 0 0 2472 2533 625581274 625581213 1.790000e-21 115.0
53 TraesCS7D01G470200 chr6B 100.000 31 0 0 2441 2471 678596077 678596047 3.050000e-04 58.4
54 TraesCS7D01G470200 chr4A 100.000 62 0 0 2472 2533 432430128 432430067 1.790000e-21 115.0
55 TraesCS7D01G470200 chr4A 100.000 62 0 0 2472 2533 552089215 552089154 1.790000e-21 115.0
56 TraesCS7D01G470200 chr5A 100.000 28 0 0 821 848 422065558 422065531 1.400000e-02 52.8
57 TraesCS7D01G470200 chr5A 96.774 31 1 0 2441 2471 671985192 671985162 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G470200 chr7D 583446185 583454016 7831 False 14464.000000 14464 100.000000 1 7832 1 chr7D.!!$F2 7831
1 TraesCS7D01G470200 chr7A 675071082 675079185 8103 False 1625.000000 3999 97.910500 1 7832 8 chr7A.!!$F2 7831
2 TraesCS7D01G470200 chr6A 146520187 146529301 9114 True 626.444444 1467 86.638556 1 7300 9 chr6A.!!$R2 7299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 1.210204 TCCAATGAGGCTCCCAGCTT 61.210 55.000 12.86 0.0 41.99 3.74 F
1672 4709 2.791655 ACAAGAATTTCCCTCCGGTTC 58.208 47.619 0.00 0.0 0.00 3.62 F
2486 5527 0.179081 GTATCAGCTGTTCGGGGGTC 60.179 60.000 14.67 0.0 0.00 4.46 F
2522 5563 0.040646 TGATCGACCCCTACCAGTGT 59.959 55.000 0.00 0.0 0.00 3.55 F
2523 5564 1.285667 TGATCGACCCCTACCAGTGTA 59.714 52.381 0.00 0.0 0.00 2.90 F
3390 6637 1.751927 CTGGCCTGCACCCATCTTC 60.752 63.158 3.32 0.0 0.00 2.87 F
3848 7095 1.148273 TTGTGGCCAAGACGAGCTT 59.852 52.632 7.24 0.0 37.29 3.74 F
4814 8086 1.224003 ATCCCCTGCTTCCCCACATT 61.224 55.000 0.00 0.0 0.00 2.71 F
5084 8368 0.038310 GGACTGCTGTTAGCCCCTTT 59.962 55.000 0.00 0.0 41.51 3.11 F
6258 9906 0.102663 TCACTGTGGTTCGTGCGTTA 59.897 50.000 8.11 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 4918 1.804151 TGTCCAAATCGTGTTAGCAGC 59.196 47.619 0.00 0.00 0.00 5.25 R
2503 5544 0.040646 ACACTGGTAGGGGTCGATCA 59.959 55.000 0.00 0.00 0.00 2.92 R
3390 6637 1.277273 TGCATGACTCCCAGACTTGAG 59.723 52.381 0.00 0.00 34.73 3.02 R
3391 6638 1.351076 TGCATGACTCCCAGACTTGA 58.649 50.000 0.00 0.00 0.00 3.02 R
3405 6652 2.666508 GCAAGCTTGAGAACATTGCATG 59.333 45.455 30.39 0.00 44.32 4.06 R
4884 8167 0.320374 AAATTCTCGCGGTGAGGTGA 59.680 50.000 17.79 5.82 45.32 4.02 R
4947 8230 0.545787 TCACAGACCATTACGGGGGT 60.546 55.000 0.00 0.00 40.22 4.95 R
6365 10013 0.035630 CAAGGAGGAAGACAGCAGGG 60.036 60.000 0.00 0.00 0.00 4.45 R
6656 10680 1.593196 CGGTCAGCAGGTTTCAAAGA 58.407 50.000 0.00 0.00 0.00 2.52 R
7697 11977 0.881118 CAGCATTGGCCTTACACGTT 59.119 50.000 3.32 0.00 42.56 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.210204 TCCAATGAGGCTCCCAGCTT 61.210 55.000 12.86 0.00 41.99 3.74
342 397 9.265901 CATGGTAGTTGGATCTAGTCATTTAAG 57.734 37.037 0.00 0.00 0.00 1.85
1259 4291 9.692749 GTTTTTAAAATCTTAGGTTCCTTCTGG 57.307 33.333 0.55 0.00 0.00 3.86
1668 4705 4.202245 TGTCTACAAGAATTTCCCTCCG 57.798 45.455 0.00 0.00 0.00 4.63
1672 4709 2.791655 ACAAGAATTTCCCTCCGGTTC 58.208 47.619 0.00 0.00 0.00 3.62
1765 4804 9.605275 CACAAGAAGATTATCTGTTTCTCCATA 57.395 33.333 0.00 0.00 0.00 2.74
1776 4815 6.132658 TCTGTTTCTCCATATAGAGCTCTGT 58.867 40.000 26.78 22.11 33.66 3.41
1877 4918 2.202851 CAGTAGCCAGAGCCTGCG 60.203 66.667 0.00 0.00 41.25 5.18
2140 5181 0.670546 AGATTTGTGTGACCCGAGCG 60.671 55.000 0.00 0.00 0.00 5.03
2206 5247 7.488187 ACTGATTAATCATTGTCATTCTCCG 57.512 36.000 18.26 5.00 36.02 4.63
2214 5255 8.964476 AATCATTGTCATTCTCCGTAATACTT 57.036 30.769 0.00 0.00 0.00 2.24
2216 5257 8.786826 TCATTGTCATTCTCCGTAATACTTTT 57.213 30.769 0.00 0.00 0.00 2.27
2217 5258 8.664798 TCATTGTCATTCTCCGTAATACTTTTG 58.335 33.333 0.00 0.00 0.00 2.44
2218 5259 6.417191 TGTCATTCTCCGTAATACTTTTGC 57.583 37.500 0.00 0.00 0.00 3.68
2219 5260 5.353123 TGTCATTCTCCGTAATACTTTTGCC 59.647 40.000 0.00 0.00 0.00 4.52
2220 5261 5.353123 GTCATTCTCCGTAATACTTTTGCCA 59.647 40.000 0.00 0.00 0.00 4.92
2221 5262 5.353123 TCATTCTCCGTAATACTTTTGCCAC 59.647 40.000 0.00 0.00 0.00 5.01
2222 5263 3.255725 TCTCCGTAATACTTTTGCCACG 58.744 45.455 0.00 0.00 0.00 4.94
2223 5264 2.997986 CTCCGTAATACTTTTGCCACGT 59.002 45.455 0.00 0.00 0.00 4.49
2224 5265 4.082300 TCTCCGTAATACTTTTGCCACGTA 60.082 41.667 0.00 0.00 0.00 3.57
2225 5266 3.925913 TCCGTAATACTTTTGCCACGTAC 59.074 43.478 0.00 0.00 0.00 3.67
2226 5267 3.679025 CCGTAATACTTTTGCCACGTACA 59.321 43.478 0.00 0.00 0.00 2.90
2227 5268 4.434593 CCGTAATACTTTTGCCACGTACAC 60.435 45.833 0.00 0.00 0.00 2.90
2228 5269 4.150274 CGTAATACTTTTGCCACGTACACA 59.850 41.667 0.00 0.00 0.00 3.72
2229 5270 4.477302 AATACTTTTGCCACGTACACAC 57.523 40.909 0.00 0.00 0.00 3.82
2230 5271 1.740297 ACTTTTGCCACGTACACACA 58.260 45.000 0.00 0.00 0.00 3.72
2231 5272 2.085320 ACTTTTGCCACGTACACACAA 58.915 42.857 0.00 0.00 0.00 3.33
2232 5273 2.488545 ACTTTTGCCACGTACACACAAA 59.511 40.909 0.00 0.00 0.00 2.83
2233 5274 3.057456 ACTTTTGCCACGTACACACAAAA 60.057 39.130 10.68 10.68 37.75 2.44
2234 5275 2.546195 TTGCCACGTACACACAAAAC 57.454 45.000 0.00 0.00 0.00 2.43
2235 5276 1.450025 TGCCACGTACACACAAAACA 58.550 45.000 0.00 0.00 0.00 2.83
2236 5277 2.017782 TGCCACGTACACACAAAACAT 58.982 42.857 0.00 0.00 0.00 2.71
2237 5278 2.423892 TGCCACGTACACACAAAACATT 59.576 40.909 0.00 0.00 0.00 2.71
2238 5279 3.040099 GCCACGTACACACAAAACATTC 58.960 45.455 0.00 0.00 0.00 2.67
2239 5280 3.623863 CCACGTACACACAAAACATTCC 58.376 45.455 0.00 0.00 0.00 3.01
2240 5281 3.549221 CCACGTACACACAAAACATTCCC 60.549 47.826 0.00 0.00 0.00 3.97
2241 5282 2.619646 ACGTACACACAAAACATTCCCC 59.380 45.455 0.00 0.00 0.00 4.81
2242 5283 2.882137 CGTACACACAAAACATTCCCCT 59.118 45.455 0.00 0.00 0.00 4.79
2243 5284 3.304391 CGTACACACAAAACATTCCCCTG 60.304 47.826 0.00 0.00 0.00 4.45
2244 5285 2.745968 ACACACAAAACATTCCCCTGT 58.254 42.857 0.00 0.00 0.00 4.00
2245 5286 2.693074 ACACACAAAACATTCCCCTGTC 59.307 45.455 0.00 0.00 0.00 3.51
2246 5287 2.692557 CACACAAAACATTCCCCTGTCA 59.307 45.455 0.00 0.00 0.00 3.58
2247 5288 3.321682 CACACAAAACATTCCCCTGTCAT 59.678 43.478 0.00 0.00 0.00 3.06
2248 5289 4.522405 CACACAAAACATTCCCCTGTCATA 59.478 41.667 0.00 0.00 0.00 2.15
2249 5290 5.010516 CACACAAAACATTCCCCTGTCATAA 59.989 40.000 0.00 0.00 0.00 1.90
2250 5291 5.779771 ACACAAAACATTCCCCTGTCATAAT 59.220 36.000 0.00 0.00 0.00 1.28
2251 5292 6.101332 CACAAAACATTCCCCTGTCATAATG 58.899 40.000 0.00 0.00 35.83 1.90
2252 5293 5.779771 ACAAAACATTCCCCTGTCATAATGT 59.220 36.000 0.00 0.00 42.71 2.71
2253 5294 6.951198 ACAAAACATTCCCCTGTCATAATGTA 59.049 34.615 0.00 0.00 40.66 2.29
2254 5295 7.093945 ACAAAACATTCCCCTGTCATAATGTAC 60.094 37.037 0.00 0.00 40.66 2.90
2255 5296 5.708736 ACATTCCCCTGTCATAATGTACA 57.291 39.130 0.00 0.00 39.96 2.90
2256 5297 5.684704 ACATTCCCCTGTCATAATGTACAG 58.315 41.667 0.33 0.00 39.96 2.74
2257 5298 5.428457 ACATTCCCCTGTCATAATGTACAGA 59.572 40.000 0.33 0.00 44.79 3.41
2258 5299 5.353394 TTCCCCTGTCATAATGTACAGAC 57.647 43.478 0.33 3.85 44.79 3.51
2259 5300 4.620723 TCCCCTGTCATAATGTACAGACT 58.379 43.478 12.56 0.00 44.79 3.24
2260 5301 5.773091 TCCCCTGTCATAATGTACAGACTA 58.227 41.667 12.56 0.71 44.79 2.59
2261 5302 6.382087 TCCCCTGTCATAATGTACAGACTAT 58.618 40.000 12.56 2.78 44.79 2.12
2262 5303 6.267699 TCCCCTGTCATAATGTACAGACTATG 59.732 42.308 12.56 12.70 44.79 2.23
2263 5304 6.267699 CCCCTGTCATAATGTACAGACTATGA 59.732 42.308 15.80 15.80 44.79 2.15
2362 5403 6.845302 TGCATATAAGATCGCAATTCAATCC 58.155 36.000 0.00 0.00 0.00 3.01
2471 5512 9.420551 CCTCCGTTCTTTTATATAAGGTGTATC 57.579 37.037 3.49 0.00 0.00 2.24
2472 5513 9.976511 CTCCGTTCTTTTATATAAGGTGTATCA 57.023 33.333 3.49 0.00 0.00 2.15
2474 5515 8.709646 CCGTTCTTTTATATAAGGTGTATCAGC 58.290 37.037 3.49 0.00 0.00 4.26
2475 5516 9.477484 CGTTCTTTTATATAAGGTGTATCAGCT 57.523 33.333 3.49 0.00 44.48 4.24
2480 5521 8.812147 TTTATATAAGGTGTATCAGCTGTTCG 57.188 34.615 14.67 0.00 41.59 3.95
2481 5522 2.386661 AAGGTGTATCAGCTGTTCGG 57.613 50.000 14.67 0.00 41.59 4.30
2482 5523 0.537188 AGGTGTATCAGCTGTTCGGG 59.463 55.000 14.67 0.00 40.87 5.14
2483 5524 0.462047 GGTGTATCAGCTGTTCGGGG 60.462 60.000 14.67 0.00 0.00 5.73
2484 5525 0.462047 GTGTATCAGCTGTTCGGGGG 60.462 60.000 14.67 0.00 0.00 5.40
2485 5526 0.907704 TGTATCAGCTGTTCGGGGGT 60.908 55.000 14.67 0.00 0.00 4.95
2486 5527 0.179081 GTATCAGCTGTTCGGGGGTC 60.179 60.000 14.67 0.00 0.00 4.46
2487 5528 0.616395 TATCAGCTGTTCGGGGGTCA 60.616 55.000 14.67 0.00 0.00 4.02
2488 5529 1.903877 ATCAGCTGTTCGGGGGTCAG 61.904 60.000 14.67 0.00 0.00 3.51
2491 5532 2.750350 CTGTTCGGGGGTCAGCTT 59.250 61.111 0.00 0.00 0.00 3.74
2492 5533 1.073199 CTGTTCGGGGGTCAGCTTT 59.927 57.895 0.00 0.00 0.00 3.51
2493 5534 1.228124 TGTTCGGGGGTCAGCTTTG 60.228 57.895 0.00 0.00 0.00 2.77
2494 5535 1.971695 GTTCGGGGGTCAGCTTTGG 60.972 63.158 0.00 0.00 0.00 3.28
2495 5536 3.204467 TTCGGGGGTCAGCTTTGGG 62.204 63.158 0.00 0.00 0.00 4.12
2496 5537 3.646715 CGGGGGTCAGCTTTGGGA 61.647 66.667 0.00 0.00 0.00 4.37
2497 5538 2.983879 CGGGGGTCAGCTTTGGGAT 61.984 63.158 0.00 0.00 0.00 3.85
2498 5539 1.388133 GGGGGTCAGCTTTGGGATT 59.612 57.895 0.00 0.00 0.00 3.01
2499 5540 0.252239 GGGGGTCAGCTTTGGGATTT 60.252 55.000 0.00 0.00 0.00 2.17
2500 5541 0.897621 GGGGTCAGCTTTGGGATTTG 59.102 55.000 0.00 0.00 0.00 2.32
2501 5542 0.247460 GGGTCAGCTTTGGGATTTGC 59.753 55.000 0.00 0.00 0.00 3.68
2502 5543 0.247460 GGTCAGCTTTGGGATTTGCC 59.753 55.000 0.00 0.00 0.00 4.52
2503 5544 1.260544 GTCAGCTTTGGGATTTGCCT 58.739 50.000 0.00 0.00 36.66 4.75
2504 5545 1.067354 GTCAGCTTTGGGATTTGCCTG 60.067 52.381 0.00 0.00 36.66 4.85
2505 5546 1.203038 TCAGCTTTGGGATTTGCCTGA 60.203 47.619 0.00 0.00 36.66 3.86
2506 5547 1.829222 CAGCTTTGGGATTTGCCTGAT 59.171 47.619 0.00 0.00 36.66 2.90
2507 5548 2.105766 AGCTTTGGGATTTGCCTGATC 58.894 47.619 0.00 0.00 36.66 2.92
2508 5549 1.202336 GCTTTGGGATTTGCCTGATCG 60.202 52.381 0.00 0.00 36.66 3.69
2509 5550 2.368439 CTTTGGGATTTGCCTGATCGA 58.632 47.619 0.00 0.00 36.66 3.59
2510 5551 1.750193 TTGGGATTTGCCTGATCGAC 58.250 50.000 0.00 0.00 36.66 4.20
2511 5552 0.107214 TGGGATTTGCCTGATCGACC 60.107 55.000 0.00 0.00 36.66 4.79
2512 5553 0.819666 GGGATTTGCCTGATCGACCC 60.820 60.000 0.00 0.00 36.66 4.46
2513 5554 0.819666 GGATTTGCCTGATCGACCCC 60.820 60.000 0.00 0.00 0.00 4.95
2514 5555 0.181350 GATTTGCCTGATCGACCCCT 59.819 55.000 0.00 0.00 0.00 4.79
2515 5556 1.416401 GATTTGCCTGATCGACCCCTA 59.584 52.381 0.00 0.00 0.00 3.53
2516 5557 0.539986 TTTGCCTGATCGACCCCTAC 59.460 55.000 0.00 0.00 0.00 3.18
2517 5558 1.335132 TTGCCTGATCGACCCCTACC 61.335 60.000 0.00 0.00 0.00 3.18
2518 5559 1.760875 GCCTGATCGACCCCTACCA 60.761 63.158 0.00 0.00 0.00 3.25
2519 5560 1.749334 GCCTGATCGACCCCTACCAG 61.749 65.000 0.00 0.00 0.00 4.00
2520 5561 0.397254 CCTGATCGACCCCTACCAGT 60.397 60.000 0.00 0.00 0.00 4.00
2521 5562 0.747255 CTGATCGACCCCTACCAGTG 59.253 60.000 0.00 0.00 0.00 3.66
2522 5563 0.040646 TGATCGACCCCTACCAGTGT 59.959 55.000 0.00 0.00 0.00 3.55
2523 5564 1.285667 TGATCGACCCCTACCAGTGTA 59.714 52.381 0.00 0.00 0.00 2.90
2524 5565 2.091499 TGATCGACCCCTACCAGTGTAT 60.091 50.000 0.00 0.00 0.00 2.29
2525 5566 2.537633 TCGACCCCTACCAGTGTATT 57.462 50.000 0.00 0.00 0.00 1.89
2526 5567 3.668141 TCGACCCCTACCAGTGTATTA 57.332 47.619 0.00 0.00 0.00 0.98
2527 5568 3.979911 TCGACCCCTACCAGTGTATTAA 58.020 45.455 0.00 0.00 0.00 1.40
2528 5569 4.549668 TCGACCCCTACCAGTGTATTAAT 58.450 43.478 0.00 0.00 0.00 1.40
2529 5570 4.586001 TCGACCCCTACCAGTGTATTAATC 59.414 45.833 0.00 0.00 0.00 1.75
2530 5571 4.587684 CGACCCCTACCAGTGTATTAATCT 59.412 45.833 0.00 0.00 0.00 2.40
2531 5572 5.771666 CGACCCCTACCAGTGTATTAATCTA 59.228 44.000 0.00 0.00 0.00 1.98
2532 5573 6.294397 CGACCCCTACCAGTGTATTAATCTAC 60.294 46.154 0.00 0.00 0.00 2.59
2699 5742 8.668510 ATTGCATGTATCTCTTACTTTACTGG 57.331 34.615 0.00 0.00 0.00 4.00
2731 5774 9.260002 CTGATTTACTTGCCACTAACAAATTTT 57.740 29.630 0.00 0.00 0.00 1.82
2838 5881 2.288518 GGAGGGAGTATTAGCTTCTGCG 60.289 54.545 0.00 0.00 45.42 5.18
2839 5882 2.623889 GAGGGAGTATTAGCTTCTGCGA 59.376 50.000 0.00 0.00 45.42 5.10
2842 5885 4.833380 AGGGAGTATTAGCTTCTGCGATAA 59.167 41.667 0.00 0.00 45.42 1.75
2856 5899 6.187727 TCTGCGATAAATTAATCCCCTTCT 57.812 37.500 0.00 0.00 0.00 2.85
2862 5905 8.847196 GCGATAAATTAATCCCCTTCTAGTTTT 58.153 33.333 0.00 0.00 0.00 2.43
2887 5930 2.794103 TGTGACGTGGTAAGTAGGCTA 58.206 47.619 0.00 0.00 0.00 3.93
2978 6021 8.690203 AAGCTACTCGATGCAGATATATAGAT 57.310 34.615 0.00 0.00 0.00 1.98
3182 6226 3.715628 TGCCTTCTGCTTTTGTCTTTC 57.284 42.857 0.00 0.00 42.00 2.62
3390 6637 1.751927 CTGGCCTGCACCCATCTTC 60.752 63.158 3.32 0.00 0.00 2.87
3391 6638 2.207501 CTGGCCTGCACCCATCTTCT 62.208 60.000 3.32 0.00 0.00 2.85
3405 6652 3.118811 CCATCTTCTCAAGTCTGGGAGTC 60.119 52.174 2.66 0.00 32.16 3.36
3421 6668 3.128242 GGGAGTCATGCAATGTTCTCAAG 59.872 47.826 0.00 0.00 46.80 3.02
3474 6721 5.012561 AGGGTGGAATTAGATTAGCTAGCTG 59.987 44.000 27.68 0.00 0.00 4.24
3616 6863 5.664294 ATTCATGCCTGATTGTTTGCTTA 57.336 34.783 0.00 0.00 0.00 3.09
3848 7095 1.148273 TTGTGGCCAAGACGAGCTT 59.852 52.632 7.24 0.00 37.29 3.74
4044 7291 4.200874 TCCGTTTGCTAGGTTTCTTTTCA 58.799 39.130 0.00 0.00 0.00 2.69
4208 7456 2.627217 GGTTAGATCTCCCCTGGACAGT 60.627 54.545 0.00 0.00 0.00 3.55
4318 7566 9.212641 GCTTGTCTATTGATTGATATTGCTAGA 57.787 33.333 0.00 0.00 0.00 2.43
4568 7828 2.754658 ACCTCGACTACCAGGCCG 60.755 66.667 0.00 0.00 32.32 6.13
4622 7882 1.380515 TCCTTCTCCCTCTCGGCTG 60.381 63.158 0.00 0.00 0.00 4.85
4787 8059 1.449246 GCTGCCTTCTGTCGAGCAT 60.449 57.895 0.00 0.00 34.16 3.79
4814 8086 1.224003 ATCCCCTGCTTCCCCACATT 61.224 55.000 0.00 0.00 0.00 2.71
4837 8109 2.203153 AACCAGGCGCGTTGACTT 60.203 55.556 8.43 0.00 27.82 3.01
4838 8110 2.171489 GAACCAGGCGCGTTGACTTC 62.171 60.000 8.43 7.50 27.82 3.01
4839 8111 3.777925 CCAGGCGCGTTGACTTCG 61.778 66.667 8.43 0.00 27.82 3.79
4840 8112 3.036084 CAGGCGCGTTGACTTCGT 61.036 61.111 8.43 0.00 27.82 3.85
4841 8113 2.733593 AGGCGCGTTGACTTCGTC 60.734 61.111 8.43 0.00 20.56 4.20
4842 8114 2.733593 GGCGCGTTGACTTCGTCT 60.734 61.111 8.43 0.00 33.15 4.18
4843 8115 2.465920 GCGCGTTGACTTCGTCTG 59.534 61.111 8.43 0.00 33.15 3.51
4844 8116 3.000080 GCGCGTTGACTTCGTCTGG 62.000 63.158 8.43 0.00 33.15 3.86
4892 8175 4.767255 CTGCCGGCCTCACCTCAC 62.767 72.222 26.77 0.00 35.61 3.51
4942 8225 1.822371 CCCCAAGTTAAAATGACCCCG 59.178 52.381 0.00 0.00 0.00 5.73
4945 8228 4.080687 CCCAAGTTAAAATGACCCCGTAA 58.919 43.478 0.00 0.00 0.00 3.18
4947 8230 5.010820 CCCAAGTTAAAATGACCCCGTAAAA 59.989 40.000 0.00 0.00 0.00 1.52
4948 8231 5.921976 CCAAGTTAAAATGACCCCGTAAAAC 59.078 40.000 0.00 0.00 0.00 2.43
4949 8232 5.710513 AGTTAAAATGACCCCGTAAAACC 57.289 39.130 0.00 0.00 0.00 3.27
4950 8233 4.523943 AGTTAAAATGACCCCGTAAAACCC 59.476 41.667 0.00 0.00 0.00 4.11
4951 8234 1.927487 AAATGACCCCGTAAAACCCC 58.073 50.000 0.00 0.00 0.00 4.95
4952 8235 0.040058 AATGACCCCGTAAAACCCCC 59.960 55.000 0.00 0.00 0.00 5.40
4953 8236 2.046023 GACCCCGTAAAACCCCCG 60.046 66.667 0.00 0.00 0.00 5.73
4954 8237 2.853542 ACCCCGTAAAACCCCCGT 60.854 61.111 0.00 0.00 0.00 5.28
4955 8238 1.537643 ACCCCGTAAAACCCCCGTA 60.538 57.895 0.00 0.00 0.00 4.02
4956 8239 1.130678 ACCCCGTAAAACCCCCGTAA 61.131 55.000 0.00 0.00 0.00 3.18
4957 8240 0.255604 CCCCGTAAAACCCCCGTAAT 59.744 55.000 0.00 0.00 0.00 1.89
4958 8241 1.381522 CCCGTAAAACCCCCGTAATG 58.618 55.000 0.00 0.00 0.00 1.90
4959 8242 1.381522 CCGTAAAACCCCCGTAATGG 58.618 55.000 0.00 0.00 37.55 3.16
4960 8243 1.339920 CCGTAAAACCCCCGTAATGGT 60.340 52.381 0.00 0.00 36.06 3.55
4961 8244 2.009051 CGTAAAACCCCCGTAATGGTC 58.991 52.381 0.00 0.00 32.40 4.02
4962 8245 2.355007 CGTAAAACCCCCGTAATGGTCT 60.355 50.000 0.00 0.00 32.40 3.85
4963 8246 2.209690 AAAACCCCCGTAATGGTCTG 57.790 50.000 0.00 0.00 32.40 3.51
4964 8247 1.069775 AAACCCCCGTAATGGTCTGT 58.930 50.000 0.00 0.00 32.40 3.41
4965 8248 0.326927 AACCCCCGTAATGGTCTGTG 59.673 55.000 0.00 0.00 32.40 3.66
4966 8249 0.545787 ACCCCCGTAATGGTCTGTGA 60.546 55.000 0.00 0.00 35.15 3.58
4967 8250 0.616371 CCCCCGTAATGGTCTGTGAA 59.384 55.000 0.00 0.00 35.15 3.18
4968 8251 1.211949 CCCCCGTAATGGTCTGTGAAT 59.788 52.381 0.00 0.00 35.15 2.57
4969 8252 2.288666 CCCCGTAATGGTCTGTGAATG 58.711 52.381 0.00 0.00 35.15 2.67
4970 8253 2.355716 CCCCGTAATGGTCTGTGAATGT 60.356 50.000 0.00 0.00 35.15 2.71
4971 8254 3.118555 CCCCGTAATGGTCTGTGAATGTA 60.119 47.826 0.00 0.00 35.15 2.29
4972 8255 4.119862 CCCGTAATGGTCTGTGAATGTAG 58.880 47.826 0.00 0.00 35.15 2.74
4973 8256 3.555956 CCGTAATGGTCTGTGAATGTAGC 59.444 47.826 0.00 0.00 0.00 3.58
4974 8257 4.180817 CGTAATGGTCTGTGAATGTAGCA 58.819 43.478 0.00 0.00 0.00 3.49
4975 8258 4.811024 CGTAATGGTCTGTGAATGTAGCAT 59.189 41.667 0.00 0.00 0.00 3.79
4976 8259 5.294306 CGTAATGGTCTGTGAATGTAGCATT 59.706 40.000 0.00 0.00 41.45 3.56
4977 8260 6.478673 CGTAATGGTCTGTGAATGTAGCATTA 59.521 38.462 0.00 0.00 39.81 1.90
4978 8261 6.683974 AATGGTCTGTGAATGTAGCATTAC 57.316 37.500 0.00 0.00 38.04 1.89
4979 8262 5.420725 TGGTCTGTGAATGTAGCATTACT 57.579 39.130 0.00 0.00 0.00 2.24
4980 8263 5.419542 TGGTCTGTGAATGTAGCATTACTC 58.580 41.667 0.00 0.00 0.00 2.59
4981 8264 5.187772 TGGTCTGTGAATGTAGCATTACTCT 59.812 40.000 0.00 0.00 0.00 3.24
4982 8265 5.521735 GGTCTGTGAATGTAGCATTACTCTG 59.478 44.000 0.00 0.00 0.00 3.35
4983 8266 5.521735 GTCTGTGAATGTAGCATTACTCTGG 59.478 44.000 0.00 0.00 0.00 3.86
4984 8267 4.191544 TGTGAATGTAGCATTACTCTGGC 58.808 43.478 0.00 0.00 0.00 4.85
4985 8268 3.561725 GTGAATGTAGCATTACTCTGGCC 59.438 47.826 0.00 0.00 0.00 5.36
4986 8269 3.455910 TGAATGTAGCATTACTCTGGCCT 59.544 43.478 3.32 0.00 0.00 5.19
4987 8270 4.080356 TGAATGTAGCATTACTCTGGCCTT 60.080 41.667 3.32 0.00 0.00 4.35
4988 8271 5.130311 TGAATGTAGCATTACTCTGGCCTTA 59.870 40.000 3.32 0.00 0.00 2.69
4989 8272 5.832539 ATGTAGCATTACTCTGGCCTTAT 57.167 39.130 3.32 0.00 0.00 1.73
5083 8367 0.842467 AGGACTGCTGTTAGCCCCTT 60.842 55.000 0.00 0.00 41.51 3.95
5084 8368 0.038310 GGACTGCTGTTAGCCCCTTT 59.962 55.000 0.00 0.00 41.51 3.11
5365 8935 2.493713 GTGGACACCTAGTGATAGCG 57.506 55.000 0.96 0.00 36.96 4.26
5428 8998 1.340017 TGCAATAGGAAGCAGTGTCCC 60.340 52.381 0.00 0.00 35.51 4.46
5461 9031 5.046878 ACGGTAGTGGACTTGTATTTCATGA 60.047 40.000 0.00 0.00 0.00 3.07
5823 9400 2.355756 CCATGGTGAATCATCGTGGTTC 59.644 50.000 23.21 4.62 44.23 3.62
5932 9509 2.423892 CTCTTAAGTAGCGCAGAGGACA 59.576 50.000 11.47 0.00 30.83 4.02
6160 9805 9.533253 CCATTTGCTTCTTTCTCTTTTCTTTTA 57.467 29.630 0.00 0.00 0.00 1.52
6243 9891 0.946221 CGCCTTCGACTTGCTTCACT 60.946 55.000 0.00 0.00 38.10 3.41
6244 9892 0.514691 GCCTTCGACTTGCTTCACTG 59.485 55.000 0.00 0.00 0.00 3.66
6245 9893 1.871080 CCTTCGACTTGCTTCACTGT 58.129 50.000 0.00 0.00 0.00 3.55
6246 9894 1.528586 CCTTCGACTTGCTTCACTGTG 59.471 52.381 0.17 0.17 0.00 3.66
6247 9895 1.528586 CTTCGACTTGCTTCACTGTGG 59.471 52.381 8.11 0.00 0.00 4.17
6248 9896 0.464036 TCGACTTGCTTCACTGTGGT 59.536 50.000 8.11 0.00 0.00 4.16
6249 9897 1.134521 TCGACTTGCTTCACTGTGGTT 60.135 47.619 8.11 0.00 0.00 3.67
6250 9898 1.261619 CGACTTGCTTCACTGTGGTTC 59.738 52.381 8.11 0.00 0.00 3.62
6251 9899 1.261619 GACTTGCTTCACTGTGGTTCG 59.738 52.381 8.11 0.00 0.00 3.95
6252 9900 1.299541 CTTGCTTCACTGTGGTTCGT 58.700 50.000 8.11 0.00 0.00 3.85
6253 9901 1.003545 CTTGCTTCACTGTGGTTCGTG 60.004 52.381 8.11 0.00 0.00 4.35
6254 9902 1.279840 GCTTCACTGTGGTTCGTGC 59.720 57.895 8.11 0.67 0.00 5.34
6255 9903 1.564622 CTTCACTGTGGTTCGTGCG 59.435 57.895 8.11 0.00 0.00 5.34
6256 9904 1.151777 CTTCACTGTGGTTCGTGCGT 61.152 55.000 8.11 0.00 0.00 5.24
6257 9905 0.741574 TTCACTGTGGTTCGTGCGTT 60.742 50.000 8.11 0.00 0.00 4.84
6258 9906 0.102663 TCACTGTGGTTCGTGCGTTA 59.897 50.000 8.11 0.00 0.00 3.18
6259 9907 1.144969 CACTGTGGTTCGTGCGTTAT 58.855 50.000 0.00 0.00 0.00 1.89
6260 9908 1.136363 CACTGTGGTTCGTGCGTTATG 60.136 52.381 0.00 0.00 0.00 1.90
6261 9909 0.179225 CTGTGGTTCGTGCGTTATGC 60.179 55.000 0.00 0.00 46.70 3.14
6262 9910 0.601576 TGTGGTTCGTGCGTTATGCT 60.602 50.000 0.00 0.00 46.63 3.79
6263 9911 0.515564 GTGGTTCGTGCGTTATGCTT 59.484 50.000 0.00 0.00 46.63 3.91
6264 9912 0.515127 TGGTTCGTGCGTTATGCTTG 59.485 50.000 0.00 0.00 46.63 4.01
6265 9913 0.179200 GGTTCGTGCGTTATGCTTGG 60.179 55.000 0.00 0.00 46.63 3.61
6266 9914 0.515564 GTTCGTGCGTTATGCTTGGT 59.484 50.000 0.00 0.00 46.63 3.67
6267 9915 0.515127 TTCGTGCGTTATGCTTGGTG 59.485 50.000 0.00 0.00 46.63 4.17
6268 9916 0.319986 TCGTGCGTTATGCTTGGTGA 60.320 50.000 0.00 0.00 46.63 4.02
6269 9917 0.179225 CGTGCGTTATGCTTGGTGAC 60.179 55.000 0.00 0.00 46.63 3.67
6270 9918 0.871722 GTGCGTTATGCTTGGTGACA 59.128 50.000 0.00 0.00 46.63 3.58
6272 9920 1.265635 TGCGTTATGCTTGGTGACAAC 59.734 47.619 0.00 0.00 46.79 3.32
6273 9921 4.248828 TGCGTTATGCTTGGTGACAACG 62.249 50.000 0.00 0.00 46.79 4.10
6280 9928 2.124529 TGGTGACAACGGCAAGCA 60.125 55.556 0.00 0.00 37.44 3.91
6281 9929 2.186160 TGGTGACAACGGCAAGCAG 61.186 57.895 0.00 0.00 37.44 4.24
6282 9930 2.639286 GTGACAACGGCAAGCAGG 59.361 61.111 0.00 0.00 0.00 4.85
6283 9931 3.286751 TGACAACGGCAAGCAGGC 61.287 61.111 0.00 0.00 39.93 4.85
6292 9940 3.349006 CAAGCAGGCGCGTTCACT 61.349 61.111 8.43 0.00 45.49 3.41
6293 9941 2.591715 AAGCAGGCGCGTTCACTT 60.592 55.556 8.43 4.28 45.49 3.16
6294 9942 2.896801 AAGCAGGCGCGTTCACTTG 61.897 57.895 8.43 0.00 45.49 3.16
6295 9943 4.389576 GCAGGCGCGTTCACTTGG 62.390 66.667 8.43 0.00 0.00 3.61
6296 9944 2.972505 CAGGCGCGTTCACTTGGT 60.973 61.111 8.43 0.00 0.00 3.67
6297 9945 2.972505 AGGCGCGTTCACTTGGTG 60.973 61.111 8.43 0.00 34.45 4.17
6298 9946 2.970324 GGCGCGTTCACTTGGTGA 60.970 61.111 8.43 0.00 41.09 4.02
6299 9947 2.248431 GCGCGTTCACTTGGTGAC 59.752 61.111 8.43 0.00 42.60 3.67
6300 9948 2.530497 GCGCGTTCACTTGGTGACA 61.530 57.895 8.43 0.00 42.60 3.58
6301 9949 1.841663 GCGCGTTCACTTGGTGACAT 61.842 55.000 8.43 0.00 42.60 3.06
6302 9950 0.110688 CGCGTTCACTTGGTGACATG 60.111 55.000 0.00 0.00 42.60 3.21
6303 9951 1.225855 GCGTTCACTTGGTGACATGA 58.774 50.000 0.00 0.00 42.60 3.07
6304 9952 1.195448 GCGTTCACTTGGTGACATGAG 59.805 52.381 0.00 0.00 42.60 2.90
6305 9953 2.754472 CGTTCACTTGGTGACATGAGA 58.246 47.619 0.00 0.00 42.60 3.27
6306 9954 3.130633 CGTTCACTTGGTGACATGAGAA 58.869 45.455 0.00 0.00 42.60 2.87
6307 9955 3.559655 CGTTCACTTGGTGACATGAGAAA 59.440 43.478 0.00 0.00 43.14 2.52
6308 9956 4.552767 CGTTCACTTGGTGACATGAGAAAC 60.553 45.833 0.00 0.00 43.14 2.78
6309 9957 3.476552 TCACTTGGTGACATGAGAAACC 58.523 45.455 0.00 1.76 42.32 3.27
6310 9958 2.224079 CACTTGGTGACATGAGAAACCG 59.776 50.000 0.00 0.00 42.32 4.44
6311 9959 2.104111 ACTTGGTGACATGAGAAACCGA 59.896 45.455 0.00 0.36 42.32 4.69
6312 9960 2.920724 TGGTGACATGAGAAACCGAA 57.079 45.000 0.00 0.00 35.33 4.30
6313 9961 3.417069 TGGTGACATGAGAAACCGAAT 57.583 42.857 0.00 0.00 35.33 3.34
6314 9962 3.073678 TGGTGACATGAGAAACCGAATG 58.926 45.455 0.00 0.00 35.33 2.67
6315 9963 3.244387 TGGTGACATGAGAAACCGAATGA 60.244 43.478 0.00 0.00 35.33 2.57
6316 9964 3.372206 GGTGACATGAGAAACCGAATGAG 59.628 47.826 0.00 0.00 0.00 2.90
6317 9965 3.002791 TGACATGAGAAACCGAATGAGC 58.997 45.455 0.00 0.00 0.00 4.26
6318 9966 3.002791 GACATGAGAAACCGAATGAGCA 58.997 45.455 0.00 0.00 0.00 4.26
6319 9967 3.005554 ACATGAGAAACCGAATGAGCAG 58.994 45.455 0.00 0.00 0.00 4.24
6320 9968 3.264947 CATGAGAAACCGAATGAGCAGA 58.735 45.455 0.00 0.00 0.00 4.26
6321 9969 3.401033 TGAGAAACCGAATGAGCAGAA 57.599 42.857 0.00 0.00 0.00 3.02
6322 9970 3.738982 TGAGAAACCGAATGAGCAGAAA 58.261 40.909 0.00 0.00 0.00 2.52
6323 9971 3.498397 TGAGAAACCGAATGAGCAGAAAC 59.502 43.478 0.00 0.00 0.00 2.78
6324 9972 2.814336 AGAAACCGAATGAGCAGAAACC 59.186 45.455 0.00 0.00 0.00 3.27
6325 9973 2.568623 AACCGAATGAGCAGAAACCT 57.431 45.000 0.00 0.00 0.00 3.50
6326 9974 2.568623 ACCGAATGAGCAGAAACCTT 57.431 45.000 0.00 0.00 0.00 3.50
6327 9975 2.863809 ACCGAATGAGCAGAAACCTTT 58.136 42.857 0.00 0.00 0.00 3.11
6328 9976 2.814336 ACCGAATGAGCAGAAACCTTTC 59.186 45.455 0.00 0.00 37.45 2.62
6330 9978 3.503748 CCGAATGAGCAGAAACCTTTCTT 59.496 43.478 0.00 0.00 44.70 2.52
6331 9979 4.022849 CCGAATGAGCAGAAACCTTTCTTT 60.023 41.667 0.00 0.00 44.70 2.52
6332 9980 5.507985 CCGAATGAGCAGAAACCTTTCTTTT 60.508 40.000 0.00 0.00 44.70 2.27
6333 9981 6.293955 CCGAATGAGCAGAAACCTTTCTTTTA 60.294 38.462 0.00 0.00 44.70 1.52
6334 9982 7.308435 CGAATGAGCAGAAACCTTTCTTTTAT 58.692 34.615 0.00 0.00 44.70 1.40
6335 9983 7.809806 CGAATGAGCAGAAACCTTTCTTTTATT 59.190 33.333 0.00 0.00 44.70 1.40
6336 9984 9.481340 GAATGAGCAGAAACCTTTCTTTTATTT 57.519 29.630 0.00 0.00 44.70 1.40
6337 9985 9.481340 AATGAGCAGAAACCTTTCTTTTATTTC 57.519 29.630 0.00 0.00 44.70 2.17
6338 9986 7.433680 TGAGCAGAAACCTTTCTTTTATTTCC 58.566 34.615 0.00 0.00 44.70 3.13
6339 9987 7.069331 TGAGCAGAAACCTTTCTTTTATTTCCA 59.931 33.333 0.00 0.00 44.70 3.53
6340 9988 7.966812 AGCAGAAACCTTTCTTTTATTTCCAT 58.033 30.769 0.00 0.00 44.70 3.41
6341 9989 8.432013 AGCAGAAACCTTTCTTTTATTTCCATT 58.568 29.630 0.00 0.00 44.70 3.16
6342 9990 9.056005 GCAGAAACCTTTCTTTTATTTCCATTT 57.944 29.630 0.00 0.00 44.70 2.32
6359 10007 8.940768 TTTCCATTTTTACTCCTTTCTTTGTG 57.059 30.769 0.00 0.00 0.00 3.33
6360 10008 6.512297 TCCATTTTTACTCCTTTCTTTGTGC 58.488 36.000 0.00 0.00 0.00 4.57
6361 10009 6.323739 TCCATTTTTACTCCTTTCTTTGTGCT 59.676 34.615 0.00 0.00 0.00 4.40
6362 10010 6.986231 CCATTTTTACTCCTTTCTTTGTGCTT 59.014 34.615 0.00 0.00 0.00 3.91
6363 10011 7.495606 CCATTTTTACTCCTTTCTTTGTGCTTT 59.504 33.333 0.00 0.00 0.00 3.51
6364 10012 8.882736 CATTTTTACTCCTTTCTTTGTGCTTTT 58.117 29.630 0.00 0.00 0.00 2.27
6365 10013 8.474006 TTTTTACTCCTTTCTTTGTGCTTTTC 57.526 30.769 0.00 0.00 0.00 2.29
6459 10109 0.240945 ACTTGTGCGTTATGCTTGGC 59.759 50.000 0.00 0.00 46.63 4.52
6645 10669 1.079875 GGCGACCGCGAACTTTATGA 61.080 55.000 8.23 0.00 43.06 2.15
6656 10680 5.692204 CGCGAACTTTATGATAGAATGACCT 59.308 40.000 0.00 0.00 0.00 3.85
7243 11312 4.269183 TGTCGCCAAGAATTGTATGGATT 58.731 39.130 7.64 0.00 46.99 3.01
7353 11423 2.224646 GGAAAGCTTCACTTCCCTGACT 60.225 50.000 0.00 0.00 37.75 3.41
7409 11479 0.373716 GTCGAAATGATGCCACGGAC 59.626 55.000 0.00 0.00 0.00 4.79
7686 11959 5.358725 CACAAATTCATGTCATGATCCCAGA 59.641 40.000 16.19 0.80 39.39 3.86
7687 11960 5.359009 ACAAATTCATGTCATGATCCCAGAC 59.641 40.000 16.19 0.00 39.39 3.51
7726 12006 2.046023 CAATGCTGTCCCGAGGCA 60.046 61.111 0.00 0.00 40.32 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.797451 TTCATTGCTCACAAACTTGCA 57.203 38.095 0.00 0.00 39.77 4.08
342 397 0.458260 AACCAAACAACCCGACAAGC 59.542 50.000 0.00 0.00 0.00 4.01
692 1020 1.613925 TGAGGTCCTCTCAGTTCAACG 59.386 52.381 19.82 0.00 46.71 4.10
1126 4154 5.175127 ACTGTTCGCATTTTTGAAAACCTT 58.825 33.333 0.00 0.00 0.00 3.50
1259 4291 6.593382 ACAAGCTAGAAGATCATCAACAGTTC 59.407 38.462 0.10 0.00 0.00 3.01
1765 4804 2.568956 TGAACCTTGCACAGAGCTCTAT 59.431 45.455 17.75 0.62 45.94 1.98
1776 4815 8.264347 TCATAGTAACAGAATATGAACCTTGCA 58.736 33.333 0.00 0.00 33.99 4.08
1877 4918 1.804151 TGTCCAAATCGTGTTAGCAGC 59.196 47.619 0.00 0.00 0.00 5.25
2140 5181 7.886338 AGAACATAAGACAAACAAGATTTCCC 58.114 34.615 0.00 0.00 0.00 3.97
2206 5247 5.050227 TGTGTGTACGTGGCAAAAGTATTAC 60.050 40.000 0.00 0.00 0.00 1.89
2214 5255 2.228103 TGTTTTGTGTGTACGTGGCAAA 59.772 40.909 0.00 0.00 0.00 3.68
2216 5257 1.450025 TGTTTTGTGTGTACGTGGCA 58.550 45.000 0.00 0.00 0.00 4.92
2217 5258 2.766970 ATGTTTTGTGTGTACGTGGC 57.233 45.000 0.00 0.00 0.00 5.01
2218 5259 3.549221 GGGAATGTTTTGTGTGTACGTGG 60.549 47.826 0.00 0.00 0.00 4.94
2219 5260 3.549221 GGGGAATGTTTTGTGTGTACGTG 60.549 47.826 0.00 0.00 0.00 4.49
2220 5261 2.619646 GGGGAATGTTTTGTGTGTACGT 59.380 45.455 0.00 0.00 0.00 3.57
2221 5262 2.882137 AGGGGAATGTTTTGTGTGTACG 59.118 45.455 0.00 0.00 0.00 3.67
2222 5263 3.634910 ACAGGGGAATGTTTTGTGTGTAC 59.365 43.478 0.00 0.00 0.00 2.90
2223 5264 3.886505 GACAGGGGAATGTTTTGTGTGTA 59.113 43.478 0.00 0.00 32.25 2.90
2224 5265 2.693074 GACAGGGGAATGTTTTGTGTGT 59.307 45.455 0.00 0.00 32.25 3.72
2225 5266 2.692557 TGACAGGGGAATGTTTTGTGTG 59.307 45.455 0.00 0.00 32.25 3.82
2226 5267 3.025322 TGACAGGGGAATGTTTTGTGT 57.975 42.857 0.00 0.00 32.25 3.72
2227 5268 5.720371 TTATGACAGGGGAATGTTTTGTG 57.280 39.130 0.00 0.00 32.25 3.33
2228 5269 5.779771 ACATTATGACAGGGGAATGTTTTGT 59.220 36.000 0.00 0.00 38.97 2.83
2229 5270 6.284891 ACATTATGACAGGGGAATGTTTTG 57.715 37.500 0.00 0.00 38.97 2.44
2230 5271 6.951198 TGTACATTATGACAGGGGAATGTTTT 59.049 34.615 0.00 0.00 41.50 2.43
2231 5272 6.489603 TGTACATTATGACAGGGGAATGTTT 58.510 36.000 0.00 0.00 41.50 2.83
2232 5273 6.069673 TCTGTACATTATGACAGGGGAATGTT 60.070 38.462 17.82 1.03 42.77 2.71
2233 5274 5.428457 TCTGTACATTATGACAGGGGAATGT 59.572 40.000 17.82 10.71 42.77 2.71
2234 5275 5.760253 GTCTGTACATTATGACAGGGGAATG 59.240 44.000 17.82 0.00 42.77 2.67
2235 5276 5.667626 AGTCTGTACATTATGACAGGGGAAT 59.332 40.000 17.82 3.84 42.77 3.01
2236 5277 5.030147 AGTCTGTACATTATGACAGGGGAA 58.970 41.667 17.82 3.85 42.77 3.97
2237 5278 4.620723 AGTCTGTACATTATGACAGGGGA 58.379 43.478 17.82 4.28 42.77 4.81
2238 5279 6.267699 TCATAGTCTGTACATTATGACAGGGG 59.732 42.308 17.82 3.09 42.77 4.79
2239 5280 7.290110 TCATAGTCTGTACATTATGACAGGG 57.710 40.000 17.82 4.45 42.77 4.45
2240 5281 9.599866 TTTTCATAGTCTGTACATTATGACAGG 57.400 33.333 17.55 7.69 42.77 4.00
2247 5288 9.555727 GCCCTTATTTTCATAGTCTGTACATTA 57.444 33.333 0.00 0.00 0.00 1.90
2248 5289 8.052748 TGCCCTTATTTTCATAGTCTGTACATT 58.947 33.333 0.00 0.00 0.00 2.71
2249 5290 7.573710 TGCCCTTATTTTCATAGTCTGTACAT 58.426 34.615 0.00 0.00 0.00 2.29
2250 5291 6.953101 TGCCCTTATTTTCATAGTCTGTACA 58.047 36.000 0.00 0.00 0.00 2.90
2251 5292 7.048512 ACTGCCCTTATTTTCATAGTCTGTAC 58.951 38.462 0.00 0.00 0.00 2.90
2252 5293 7.195374 ACTGCCCTTATTTTCATAGTCTGTA 57.805 36.000 0.00 0.00 0.00 2.74
2253 5294 6.067217 ACTGCCCTTATTTTCATAGTCTGT 57.933 37.500 0.00 0.00 0.00 3.41
2254 5295 6.825721 AGAACTGCCCTTATTTTCATAGTCTG 59.174 38.462 0.00 0.00 0.00 3.51
2255 5296 6.963322 AGAACTGCCCTTATTTTCATAGTCT 58.037 36.000 0.00 0.00 0.00 3.24
2256 5297 6.823689 TGAGAACTGCCCTTATTTTCATAGTC 59.176 38.462 0.00 0.00 0.00 2.59
2257 5298 6.721318 TGAGAACTGCCCTTATTTTCATAGT 58.279 36.000 0.00 0.00 0.00 2.12
2258 5299 7.630242 TTGAGAACTGCCCTTATTTTCATAG 57.370 36.000 0.00 0.00 0.00 2.23
2259 5300 8.593945 ATTTGAGAACTGCCCTTATTTTCATA 57.406 30.769 0.00 0.00 0.00 2.15
2260 5301 6.916360 TTTGAGAACTGCCCTTATTTTCAT 57.084 33.333 0.00 0.00 0.00 2.57
2261 5302 6.916360 ATTTGAGAACTGCCCTTATTTTCA 57.084 33.333 0.00 0.00 0.00 2.69
2262 5303 7.118245 CCAAATTTGAGAACTGCCCTTATTTTC 59.882 37.037 19.86 0.00 0.00 2.29
2263 5304 6.936335 CCAAATTTGAGAACTGCCCTTATTTT 59.064 34.615 19.86 0.00 0.00 1.82
2272 5313 2.796593 GCACACCAAATTTGAGAACTGC 59.203 45.455 19.86 13.36 0.00 4.40
2346 5387 4.070716 GAGATGGGATTGAATTGCGATCT 58.929 43.478 0.00 0.00 35.72 2.75
2362 5403 4.576463 CCAGGACCTTAAAATTCGAGATGG 59.424 45.833 0.00 0.00 0.00 3.51
2432 5473 4.015764 AGAACGGAGGGAGTAGTTACTTC 58.984 47.826 0.00 0.00 36.50 3.01
2471 5512 2.046892 CTGACCCCCGAACAGCTG 60.047 66.667 13.48 13.48 0.00 4.24
2474 5515 1.073199 AAAGCTGACCCCCGAACAG 59.927 57.895 0.00 0.00 35.14 3.16
2475 5516 1.228124 CAAAGCTGACCCCCGAACA 60.228 57.895 0.00 0.00 0.00 3.18
2476 5517 1.971695 CCAAAGCTGACCCCCGAAC 60.972 63.158 0.00 0.00 0.00 3.95
2477 5518 2.434331 CCAAAGCTGACCCCCGAA 59.566 61.111 0.00 0.00 0.00 4.30
2478 5519 3.646715 CCCAAAGCTGACCCCCGA 61.647 66.667 0.00 0.00 0.00 5.14
2479 5520 2.499303 AATCCCAAAGCTGACCCCCG 62.499 60.000 0.00 0.00 0.00 5.73
2480 5521 0.252239 AAATCCCAAAGCTGACCCCC 60.252 55.000 0.00 0.00 0.00 5.40
2481 5522 0.897621 CAAATCCCAAAGCTGACCCC 59.102 55.000 0.00 0.00 0.00 4.95
2482 5523 0.247460 GCAAATCCCAAAGCTGACCC 59.753 55.000 0.00 0.00 0.00 4.46
2483 5524 0.247460 GGCAAATCCCAAAGCTGACC 59.753 55.000 0.00 0.00 0.00 4.02
2484 5525 1.067354 CAGGCAAATCCCAAAGCTGAC 60.067 52.381 0.00 0.00 34.51 3.51
2485 5526 1.203038 TCAGGCAAATCCCAAAGCTGA 60.203 47.619 0.00 0.00 34.51 4.26
2486 5527 1.259609 TCAGGCAAATCCCAAAGCTG 58.740 50.000 0.00 0.00 34.51 4.24
2487 5528 2.105766 GATCAGGCAAATCCCAAAGCT 58.894 47.619 0.00 0.00 34.51 3.74
2488 5529 1.202336 CGATCAGGCAAATCCCAAAGC 60.202 52.381 0.00 0.00 34.51 3.51
2489 5530 2.098117 GTCGATCAGGCAAATCCCAAAG 59.902 50.000 0.00 0.00 34.51 2.77
2490 5531 2.091541 GTCGATCAGGCAAATCCCAAA 58.908 47.619 0.00 0.00 34.51 3.28
2491 5532 1.681780 GGTCGATCAGGCAAATCCCAA 60.682 52.381 0.00 0.00 34.51 4.12
2492 5533 0.107214 GGTCGATCAGGCAAATCCCA 60.107 55.000 0.00 0.00 34.51 4.37
2493 5534 0.819666 GGGTCGATCAGGCAAATCCC 60.820 60.000 0.00 0.00 34.51 3.85
2494 5535 0.819666 GGGGTCGATCAGGCAAATCC 60.820 60.000 0.00 0.00 0.00 3.01
2495 5536 0.181350 AGGGGTCGATCAGGCAAATC 59.819 55.000 0.00 0.00 0.00 2.17
2496 5537 1.141053 GTAGGGGTCGATCAGGCAAAT 59.859 52.381 0.00 0.00 0.00 2.32
2497 5538 0.539986 GTAGGGGTCGATCAGGCAAA 59.460 55.000 0.00 0.00 0.00 3.68
2498 5539 1.335132 GGTAGGGGTCGATCAGGCAA 61.335 60.000 0.00 0.00 0.00 4.52
2499 5540 1.760875 GGTAGGGGTCGATCAGGCA 60.761 63.158 0.00 0.00 0.00 4.75
2500 5541 1.749334 CTGGTAGGGGTCGATCAGGC 61.749 65.000 0.00 0.00 0.00 4.85
2501 5542 0.397254 ACTGGTAGGGGTCGATCAGG 60.397 60.000 0.00 0.00 0.00 3.86
2502 5543 0.747255 CACTGGTAGGGGTCGATCAG 59.253 60.000 0.00 0.00 0.00 2.90
2503 5544 0.040646 ACACTGGTAGGGGTCGATCA 59.959 55.000 0.00 0.00 0.00 2.92
2504 5545 2.062971 TACACTGGTAGGGGTCGATC 57.937 55.000 0.00 0.00 0.00 3.69
2505 5546 2.769602 ATACACTGGTAGGGGTCGAT 57.230 50.000 0.00 0.00 31.88 3.59
2506 5547 2.537633 AATACACTGGTAGGGGTCGA 57.462 50.000 0.00 0.00 31.88 4.20
2507 5548 4.587684 AGATTAATACACTGGTAGGGGTCG 59.412 45.833 0.00 0.00 31.88 4.79
2508 5549 6.781507 AGTAGATTAATACACTGGTAGGGGTC 59.218 42.308 1.57 0.00 31.88 4.46
2509 5550 6.690569 AGTAGATTAATACACTGGTAGGGGT 58.309 40.000 1.57 0.00 31.88 4.95
2510 5551 7.613551 AAGTAGATTAATACACTGGTAGGGG 57.386 40.000 2.95 0.00 31.88 4.79
2511 5552 9.901172 AAAAAGTAGATTAATACACTGGTAGGG 57.099 33.333 2.95 0.00 31.88 3.53
2699 5742 4.319177 AGTGGCAAGTAAATCAGTGAGTC 58.681 43.478 0.00 0.00 0.00 3.36
2731 5774 4.513406 AGGACAAAAGTGTACCCTTGAA 57.487 40.909 0.00 0.00 39.75 2.69
2816 5859 2.288518 GCAGAAGCTAATACTCCCTCCG 60.289 54.545 0.00 0.00 37.91 4.63
2842 5885 8.971073 CATGTGAAAACTAGAAGGGGATTAATT 58.029 33.333 0.00 0.00 0.00 1.40
2856 5899 3.799366 ACCACGTCACATGTGAAAACTA 58.201 40.909 29.42 4.18 41.85 2.24
2862 5905 3.057104 CCTACTTACCACGTCACATGTGA 60.057 47.826 24.56 24.56 37.29 3.58
2865 5908 2.094182 AGCCTACTTACCACGTCACATG 60.094 50.000 0.00 0.00 0.00 3.21
2887 5930 3.815962 GCAGCATCATCATCTGTCAAGAT 59.184 43.478 0.00 0.00 44.35 2.40
2978 6021 9.904198 TTGGAAATTGTAGTTGAGATGATATCA 57.096 29.630 8.10 8.10 0.00 2.15
3390 6637 1.277273 TGCATGACTCCCAGACTTGAG 59.723 52.381 0.00 0.00 34.73 3.02
3391 6638 1.351076 TGCATGACTCCCAGACTTGA 58.649 50.000 0.00 0.00 0.00 3.02
3405 6652 2.666508 GCAAGCTTGAGAACATTGCATG 59.333 45.455 30.39 0.00 44.32 4.06
3421 6668 6.365050 CACAAACTTATTCAAATTGGCAAGC 58.635 36.000 5.96 0.00 0.00 4.01
3474 6721 7.161404 TCCATCTGTGGTTGCATTAGATATAC 58.839 38.462 0.00 0.00 46.16 1.47
3616 6863 6.687081 TGTTTGGAAGTTACACGAAAAGAT 57.313 33.333 0.00 0.00 0.00 2.40
4115 7363 5.486526 CCAATATAAAGCCAAAAGGCAACA 58.513 37.500 9.42 0.00 41.41 3.33
4208 7456 4.641645 CTGGGCGCCACACCTCAA 62.642 66.667 30.85 1.39 0.00 3.02
4318 7566 8.840321 CAAGTTTGTAAGCTGGCTATATAATGT 58.160 33.333 0.00 0.00 0.00 2.71
4622 7882 3.297134 ACAGGGAGAGAGAGAGATGTC 57.703 52.381 0.00 0.00 0.00 3.06
4768 8040 3.184683 GCTCGACAGAAGGCAGCG 61.185 66.667 0.00 0.00 0.00 5.18
4787 8059 1.680522 GAAGCAGGGGATCGAGCTCA 61.681 60.000 15.40 1.08 36.07 4.26
4814 8086 3.469863 AACGCGCCTGGTTCCTTCA 62.470 57.895 5.73 0.00 0.00 3.02
4875 8158 4.767255 GTGAGGTGAGGCCGGCAG 62.767 72.222 30.85 0.00 43.70 4.85
4881 8164 4.803426 CTCGCGGTGAGGTGAGGC 62.803 72.222 6.13 0.00 41.29 4.70
4884 8167 0.320374 AAATTCTCGCGGTGAGGTGA 59.680 50.000 17.79 5.82 45.32 4.02
4889 8172 0.320374 ACCTGAAATTCTCGCGGTGA 59.680 50.000 6.13 1.83 31.29 4.02
4891 8174 0.673644 CCACCTGAAATTCTCGCGGT 60.674 55.000 6.13 0.00 32.31 5.68
4892 8175 1.369091 CCCACCTGAAATTCTCGCGG 61.369 60.000 6.13 0.00 0.00 6.46
4942 8225 3.011818 CAGACCATTACGGGGGTTTTAC 58.988 50.000 0.00 0.00 40.22 2.01
4945 8228 1.069775 ACAGACCATTACGGGGGTTT 58.930 50.000 0.00 0.00 40.22 3.27
4947 8230 0.545787 TCACAGACCATTACGGGGGT 60.546 55.000 0.00 0.00 40.22 4.95
4948 8231 0.616371 TTCACAGACCATTACGGGGG 59.384 55.000 0.00 0.00 40.22 5.40
4949 8232 2.288666 CATTCACAGACCATTACGGGG 58.711 52.381 0.00 0.00 40.22 5.73
4950 8233 2.985896 ACATTCACAGACCATTACGGG 58.014 47.619 0.00 0.00 40.22 5.28
4951 8234 3.555956 GCTACATTCACAGACCATTACGG 59.444 47.826 0.00 0.00 42.50 4.02
4952 8235 4.180817 TGCTACATTCACAGACCATTACG 58.819 43.478 0.00 0.00 0.00 3.18
4953 8236 6.683974 AATGCTACATTCACAGACCATTAC 57.316 37.500 0.00 0.00 0.00 1.89
4954 8237 7.564793 AGTAATGCTACATTCACAGACCATTA 58.435 34.615 0.00 0.00 0.00 1.90
4955 8238 6.418101 AGTAATGCTACATTCACAGACCATT 58.582 36.000 0.00 0.00 0.00 3.16
4956 8239 5.994250 AGTAATGCTACATTCACAGACCAT 58.006 37.500 0.00 0.00 0.00 3.55
4957 8240 5.187772 AGAGTAATGCTACATTCACAGACCA 59.812 40.000 0.00 0.00 0.00 4.02
4958 8241 5.521735 CAGAGTAATGCTACATTCACAGACC 59.478 44.000 0.00 0.00 0.00 3.85
4959 8242 5.521735 CCAGAGTAATGCTACATTCACAGAC 59.478 44.000 0.00 0.00 0.00 3.51
4960 8243 5.664457 CCAGAGTAATGCTACATTCACAGA 58.336 41.667 0.00 0.00 0.00 3.41
4961 8244 4.272018 GCCAGAGTAATGCTACATTCACAG 59.728 45.833 0.00 0.00 0.00 3.66
4962 8245 4.191544 GCCAGAGTAATGCTACATTCACA 58.808 43.478 0.00 0.00 0.00 3.58
4963 8246 3.561725 GGCCAGAGTAATGCTACATTCAC 59.438 47.826 0.00 0.00 0.00 3.18
4964 8247 3.455910 AGGCCAGAGTAATGCTACATTCA 59.544 43.478 5.01 0.00 0.00 2.57
4965 8248 4.078639 AGGCCAGAGTAATGCTACATTC 57.921 45.455 5.01 0.00 0.00 2.67
4966 8249 4.510167 AAGGCCAGAGTAATGCTACATT 57.490 40.909 5.01 0.00 0.00 2.71
4967 8250 5.832539 ATAAGGCCAGAGTAATGCTACAT 57.167 39.130 5.01 0.00 0.00 2.29
4968 8251 5.104527 ACAATAAGGCCAGAGTAATGCTACA 60.105 40.000 5.01 0.00 0.00 2.74
4969 8252 5.237344 CACAATAAGGCCAGAGTAATGCTAC 59.763 44.000 5.01 0.00 0.00 3.58
4970 8253 5.368145 CACAATAAGGCCAGAGTAATGCTA 58.632 41.667 5.01 0.00 0.00 3.49
4971 8254 4.202441 CACAATAAGGCCAGAGTAATGCT 58.798 43.478 5.01 0.00 0.00 3.79
4972 8255 3.316308 CCACAATAAGGCCAGAGTAATGC 59.684 47.826 5.01 0.00 0.00 3.56
4973 8256 3.316308 GCCACAATAAGGCCAGAGTAATG 59.684 47.826 5.01 0.00 46.50 1.90
4974 8257 3.555966 GCCACAATAAGGCCAGAGTAAT 58.444 45.455 5.01 0.00 46.50 1.89
4975 8258 2.999331 GCCACAATAAGGCCAGAGTAA 58.001 47.619 5.01 0.00 46.50 2.24
4976 8259 2.710096 GCCACAATAAGGCCAGAGTA 57.290 50.000 5.01 0.00 46.50 2.59
4977 8260 3.577389 GCCACAATAAGGCCAGAGT 57.423 52.632 5.01 0.00 46.50 3.24
4983 8266 5.725714 ACCTACTAGGAGCCACAATAAGGC 61.726 50.000 9.28 0.00 45.13 4.35
4984 8267 3.967987 ACCTACTAGGAGCCACAATAAGG 59.032 47.826 9.28 0.00 37.67 2.69
4985 8268 6.267928 ACATACCTACTAGGAGCCACAATAAG 59.732 42.308 9.28 0.00 37.67 1.73
4986 8269 6.141083 ACATACCTACTAGGAGCCACAATAA 58.859 40.000 9.28 0.00 37.67 1.40
4987 8270 5.712752 ACATACCTACTAGGAGCCACAATA 58.287 41.667 9.28 0.00 37.67 1.90
4988 8271 4.557705 ACATACCTACTAGGAGCCACAAT 58.442 43.478 9.28 0.00 37.67 2.71
4989 8272 3.958798 GACATACCTACTAGGAGCCACAA 59.041 47.826 9.28 0.00 37.67 3.33
4995 8278 3.181447 TGTCGGGACATACCTACTAGGAG 60.181 52.174 9.28 0.00 36.09 3.69
5083 8367 2.083774 CGTTTCTATGGAGGCTGCAAA 58.916 47.619 14.16 0.00 0.00 3.68
5084 8368 1.003118 ACGTTTCTATGGAGGCTGCAA 59.997 47.619 14.16 1.71 0.00 4.08
5428 8998 1.226974 CCACTACCGTGCATCTCCG 60.227 63.158 0.00 0.00 39.86 4.63
5461 9031 1.679139 TTACTTGCTGCTGCTGTTGT 58.321 45.000 17.00 11.57 40.48 3.32
5713 9290 1.990060 TAGTGGGCTCCTCTGCACC 60.990 63.158 6.18 0.00 35.05 5.01
5871 9448 2.840651 AGGAGACATTGAAGGTACTGGG 59.159 50.000 0.00 0.00 40.86 4.45
5932 9509 0.250814 TTAACCACGTGGGGCGAAAT 60.251 50.000 36.47 12.80 44.77 2.17
6160 9805 9.546428 CACAAAGAAAGGAGTAAAAATGGAAAT 57.454 29.630 0.00 0.00 0.00 2.17
6243 9891 0.601576 AGCATAACGCACGAACCACA 60.602 50.000 0.00 0.00 46.13 4.17
6244 9892 0.515564 AAGCATAACGCACGAACCAC 59.484 50.000 0.00 0.00 46.13 4.16
6245 9893 0.515127 CAAGCATAACGCACGAACCA 59.485 50.000 0.00 0.00 46.13 3.67
6246 9894 0.179200 CCAAGCATAACGCACGAACC 60.179 55.000 0.00 0.00 46.13 3.62
6247 9895 0.515564 ACCAAGCATAACGCACGAAC 59.484 50.000 0.00 0.00 46.13 3.95
6248 9896 0.515127 CACCAAGCATAACGCACGAA 59.485 50.000 0.00 0.00 46.13 3.85
6249 9897 0.319986 TCACCAAGCATAACGCACGA 60.320 50.000 0.00 0.00 46.13 4.35
6250 9898 0.179225 GTCACCAAGCATAACGCACG 60.179 55.000 0.00 0.00 46.13 5.34
6251 9899 0.871722 TGTCACCAAGCATAACGCAC 59.128 50.000 0.00 0.00 46.13 5.34
6252 9900 1.265635 GTTGTCACCAAGCATAACGCA 59.734 47.619 0.00 0.00 46.13 5.24
6253 9901 1.724654 CGTTGTCACCAAGCATAACGC 60.725 52.381 0.00 0.00 42.91 4.84
6254 9902 1.136085 CCGTTGTCACCAAGCATAACG 60.136 52.381 0.00 0.00 40.15 3.18
6255 9903 1.401018 GCCGTTGTCACCAAGCATAAC 60.401 52.381 0.00 0.00 0.00 1.89
6256 9904 0.878416 GCCGTTGTCACCAAGCATAA 59.122 50.000 0.00 0.00 0.00 1.90
6257 9905 0.250510 TGCCGTTGTCACCAAGCATA 60.251 50.000 0.00 0.00 29.69 3.14
6258 9906 1.106351 TTGCCGTTGTCACCAAGCAT 61.106 50.000 0.00 0.00 33.40 3.79
6259 9907 1.723608 CTTGCCGTTGTCACCAAGCA 61.724 55.000 0.00 0.00 31.97 3.91
6260 9908 1.008538 CTTGCCGTTGTCACCAAGC 60.009 57.895 0.00 0.00 0.00 4.01
6261 9909 1.008538 GCTTGCCGTTGTCACCAAG 60.009 57.895 0.00 0.00 38.12 3.61
6262 9910 1.723608 CTGCTTGCCGTTGTCACCAA 61.724 55.000 0.00 0.00 0.00 3.67
6263 9911 2.124529 TGCTTGCCGTTGTCACCA 60.125 55.556 0.00 0.00 0.00 4.17
6264 9912 2.639286 CTGCTTGCCGTTGTCACC 59.361 61.111 0.00 0.00 0.00 4.02
6265 9913 2.639286 CCTGCTTGCCGTTGTCAC 59.361 61.111 0.00 0.00 0.00 3.67
6266 9914 3.286751 GCCTGCTTGCCGTTGTCA 61.287 61.111 0.00 0.00 0.00 3.58
6267 9915 4.389576 CGCCTGCTTGCCGTTGTC 62.390 66.667 0.00 0.00 0.00 3.18
6275 9923 2.896801 AAGTGAACGCGCCTGCTTG 61.897 57.895 5.73 0.00 39.65 4.01
6276 9924 2.591715 AAGTGAACGCGCCTGCTT 60.592 55.556 5.73 3.11 39.65 3.91
6277 9925 3.349006 CAAGTGAACGCGCCTGCT 61.349 61.111 5.73 0.00 39.65 4.24
6278 9926 4.389576 CCAAGTGAACGCGCCTGC 62.390 66.667 5.73 0.00 37.91 4.85
6279 9927 2.972505 ACCAAGTGAACGCGCCTG 60.973 61.111 5.73 0.00 0.00 4.85
6280 9928 2.972505 CACCAAGTGAACGCGCCT 60.973 61.111 5.73 0.00 35.23 5.52
6281 9929 2.970324 TCACCAAGTGAACGCGCC 60.970 61.111 5.73 0.00 39.78 6.53
6282 9930 1.841663 ATGTCACCAAGTGAACGCGC 61.842 55.000 5.73 0.00 44.49 6.86
6283 9931 0.110688 CATGTCACCAAGTGAACGCG 60.111 55.000 3.53 3.53 44.49 6.01
6284 9932 1.195448 CTCATGTCACCAAGTGAACGC 59.805 52.381 0.00 0.00 44.49 4.84
6285 9933 2.754472 TCTCATGTCACCAAGTGAACG 58.246 47.619 0.00 0.00 44.49 3.95
6286 9934 4.261197 GGTTTCTCATGTCACCAAGTGAAC 60.261 45.833 0.00 0.00 44.49 3.18
6287 9935 3.882888 GGTTTCTCATGTCACCAAGTGAA 59.117 43.478 0.00 0.00 44.49 3.18
6288 9936 3.476552 GGTTTCTCATGTCACCAAGTGA 58.523 45.455 0.00 0.00 40.50 3.41
6289 9937 2.224079 CGGTTTCTCATGTCACCAAGTG 59.776 50.000 0.00 0.00 34.45 3.16
6290 9938 2.104111 TCGGTTTCTCATGTCACCAAGT 59.896 45.455 0.00 0.00 0.00 3.16
6291 9939 2.766313 TCGGTTTCTCATGTCACCAAG 58.234 47.619 0.00 0.00 0.00 3.61
6292 9940 2.920724 TCGGTTTCTCATGTCACCAA 57.079 45.000 0.00 0.00 0.00 3.67
6293 9941 2.920724 TTCGGTTTCTCATGTCACCA 57.079 45.000 0.00 0.00 0.00 4.17
6294 9942 3.334691 TCATTCGGTTTCTCATGTCACC 58.665 45.455 0.00 0.00 0.00 4.02
6295 9943 3.181516 GCTCATTCGGTTTCTCATGTCAC 60.182 47.826 0.00 0.00 0.00 3.67
6296 9944 3.002791 GCTCATTCGGTTTCTCATGTCA 58.997 45.455 0.00 0.00 0.00 3.58
6297 9945 3.002791 TGCTCATTCGGTTTCTCATGTC 58.997 45.455 0.00 0.00 0.00 3.06
6298 9946 3.005554 CTGCTCATTCGGTTTCTCATGT 58.994 45.455 0.00 0.00 0.00 3.21
6299 9947 3.264947 TCTGCTCATTCGGTTTCTCATG 58.735 45.455 0.00 0.00 0.00 3.07
6300 9948 3.616956 TCTGCTCATTCGGTTTCTCAT 57.383 42.857 0.00 0.00 0.00 2.90
6301 9949 3.401033 TTCTGCTCATTCGGTTTCTCA 57.599 42.857 0.00 0.00 0.00 3.27
6302 9950 3.120165 GGTTTCTGCTCATTCGGTTTCTC 60.120 47.826 0.00 0.00 0.00 2.87
6303 9951 2.814336 GGTTTCTGCTCATTCGGTTTCT 59.186 45.455 0.00 0.00 0.00 2.52
6304 9952 2.814336 AGGTTTCTGCTCATTCGGTTTC 59.186 45.455 0.00 0.00 0.00 2.78
6305 9953 2.863809 AGGTTTCTGCTCATTCGGTTT 58.136 42.857 0.00 0.00 0.00 3.27
6306 9954 2.568623 AGGTTTCTGCTCATTCGGTT 57.431 45.000 0.00 0.00 0.00 4.44
6307 9955 2.568623 AAGGTTTCTGCTCATTCGGT 57.431 45.000 0.00 0.00 0.00 4.69
6308 9956 3.077359 AGAAAGGTTTCTGCTCATTCGG 58.923 45.455 4.13 0.00 45.27 4.30
6309 9957 4.756084 AAGAAAGGTTTCTGCTCATTCG 57.244 40.909 5.74 0.00 46.22 3.34
6310 9958 9.481340 AAATAAAAGAAAGGTTTCTGCTCATTC 57.519 29.630 5.74 0.00 46.22 2.67
6311 9959 9.481340 GAAATAAAAGAAAGGTTTCTGCTCATT 57.519 29.630 5.74 2.15 46.22 2.57
6312 9960 8.090831 GGAAATAAAAGAAAGGTTTCTGCTCAT 58.909 33.333 5.74 0.00 46.22 2.90
6313 9961 7.069331 TGGAAATAAAAGAAAGGTTTCTGCTCA 59.931 33.333 5.74 0.00 46.22 4.26
6314 9962 7.433680 TGGAAATAAAAGAAAGGTTTCTGCTC 58.566 34.615 5.74 0.00 46.22 4.26
6315 9963 7.360113 TGGAAATAAAAGAAAGGTTTCTGCT 57.640 32.000 5.74 0.00 46.22 4.24
6316 9964 8.607441 AATGGAAATAAAAGAAAGGTTTCTGC 57.393 30.769 5.74 0.00 46.22 4.26
6333 9981 9.546428 CACAAAGAAAGGAGTAAAAATGGAAAT 57.454 29.630 0.00 0.00 0.00 2.17
6334 9982 7.494298 GCACAAAGAAAGGAGTAAAAATGGAAA 59.506 33.333 0.00 0.00 0.00 3.13
6335 9983 6.983890 GCACAAAGAAAGGAGTAAAAATGGAA 59.016 34.615 0.00 0.00 0.00 3.53
6336 9984 6.323739 AGCACAAAGAAAGGAGTAAAAATGGA 59.676 34.615 0.00 0.00 0.00 3.41
6337 9985 6.515832 AGCACAAAGAAAGGAGTAAAAATGG 58.484 36.000 0.00 0.00 0.00 3.16
6338 9986 8.424274 AAAGCACAAAGAAAGGAGTAAAAATG 57.576 30.769 0.00 0.00 0.00 2.32
6339 9987 9.098355 GAAAAGCACAAAGAAAGGAGTAAAAAT 57.902 29.630 0.00 0.00 0.00 1.82
6340 9988 7.547722 GGAAAAGCACAAAGAAAGGAGTAAAAA 59.452 33.333 0.00 0.00 0.00 1.94
6341 9989 7.039270 GGAAAAGCACAAAGAAAGGAGTAAAA 58.961 34.615 0.00 0.00 0.00 1.52
6342 9990 6.406512 GGGAAAAGCACAAAGAAAGGAGTAAA 60.407 38.462 0.00 0.00 0.00 2.01
6343 9991 5.068591 GGGAAAAGCACAAAGAAAGGAGTAA 59.931 40.000 0.00 0.00 0.00 2.24
6344 9992 4.583073 GGGAAAAGCACAAAGAAAGGAGTA 59.417 41.667 0.00 0.00 0.00 2.59
6345 9993 3.384789 GGGAAAAGCACAAAGAAAGGAGT 59.615 43.478 0.00 0.00 0.00 3.85
6346 9994 3.638627 AGGGAAAAGCACAAAGAAAGGAG 59.361 43.478 0.00 0.00 0.00 3.69
6347 9995 3.384467 CAGGGAAAAGCACAAAGAAAGGA 59.616 43.478 0.00 0.00 0.00 3.36
6348 9996 3.721035 CAGGGAAAAGCACAAAGAAAGG 58.279 45.455 0.00 0.00 0.00 3.11
6349 9997 3.126073 GCAGGGAAAAGCACAAAGAAAG 58.874 45.455 0.00 0.00 0.00 2.62
6350 9998 2.765699 AGCAGGGAAAAGCACAAAGAAA 59.234 40.909 0.00 0.00 0.00 2.52
6351 9999 2.101249 CAGCAGGGAAAAGCACAAAGAA 59.899 45.455 0.00 0.00 0.00 2.52
6352 10000 1.682854 CAGCAGGGAAAAGCACAAAGA 59.317 47.619 0.00 0.00 0.00 2.52
6353 10001 1.410153 ACAGCAGGGAAAAGCACAAAG 59.590 47.619 0.00 0.00 0.00 2.77
6354 10002 1.408702 GACAGCAGGGAAAAGCACAAA 59.591 47.619 0.00 0.00 0.00 2.83
6355 10003 1.032014 GACAGCAGGGAAAAGCACAA 58.968 50.000 0.00 0.00 0.00 3.33
6356 10004 0.183492 AGACAGCAGGGAAAAGCACA 59.817 50.000 0.00 0.00 0.00 4.57
6357 10005 1.268079 GAAGACAGCAGGGAAAAGCAC 59.732 52.381 0.00 0.00 0.00 4.40
6358 10006 1.609208 GAAGACAGCAGGGAAAAGCA 58.391 50.000 0.00 0.00 0.00 3.91
6359 10007 0.884514 GGAAGACAGCAGGGAAAAGC 59.115 55.000 0.00 0.00 0.00 3.51
6360 10008 2.431454 GAGGAAGACAGCAGGGAAAAG 58.569 52.381 0.00 0.00 0.00 2.27
6361 10009 1.073923 GGAGGAAGACAGCAGGGAAAA 59.926 52.381 0.00 0.00 0.00 2.29
6362 10010 0.693049 GGAGGAAGACAGCAGGGAAA 59.307 55.000 0.00 0.00 0.00 3.13
6363 10011 0.178891 AGGAGGAAGACAGCAGGGAA 60.179 55.000 0.00 0.00 0.00 3.97
6364 10012 0.178891 AAGGAGGAAGACAGCAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
6365 10013 0.035630 CAAGGAGGAAGACAGCAGGG 60.036 60.000 0.00 0.00 0.00 4.45
6459 10109 8.450964 AGATAACCACGAATATTCAGTGTTTTG 58.549 33.333 25.06 17.52 33.23 2.44
6645 10669 5.649831 GCAGGTTTCAAAGAGGTCATTCTAT 59.350 40.000 0.00 0.00 0.00 1.98
6656 10680 1.593196 CGGTCAGCAGGTTTCAAAGA 58.407 50.000 0.00 0.00 0.00 2.52
6754 10778 6.432607 CATCTGCACATAAAGATGTCAGTT 57.567 37.500 4.81 6.45 44.82 3.16
7220 11289 3.270027 TCCATACAATTCTTGGCGACAG 58.730 45.455 0.00 0.00 44.54 3.51
7243 11312 3.753272 GGAGATTGTAGTGCAGAAAAGCA 59.247 43.478 0.00 0.00 43.35 3.91
7353 11423 5.721480 TCTGTTCATCAACCTCTGGATTCTA 59.279 40.000 0.00 0.00 0.00 2.10
7409 11479 3.142174 GGGATTAAATGGCTCTTCCTCG 58.858 50.000 0.00 0.00 35.26 4.63
7686 11959 3.777478 CCTTACACGTTGTATCCATCGT 58.223 45.455 0.00 0.00 45.28 3.73
7687 11960 2.538449 GCCTTACACGTTGTATCCATCG 59.462 50.000 0.00 0.00 39.20 3.84
7697 11977 0.881118 CAGCATTGGCCTTACACGTT 59.119 50.000 3.32 0.00 42.56 3.99
7726 12006 4.960469 AGGCAAATTCCAGATGAATGACAT 59.040 37.500 0.00 0.00 42.97 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.