Multiple sequence alignment - TraesCS7D01G470000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G470000 chr7D 100.000 4210 0 0 1 4210 583067264 583063055 0.000000e+00 7775.0
1 TraesCS7D01G470000 chr7D 75.053 473 75 22 1098 1538 104943399 104943860 3.340000e-41 180.0
2 TraesCS7D01G470000 chr7D 97.500 40 1 0 4068 4107 583063164 583063125 7.550000e-08 69.4
3 TraesCS7D01G470000 chr7D 97.500 40 1 0 4101 4140 583063197 583063158 7.550000e-08 69.4
4 TraesCS7D01G470000 chr7B 93.695 3838 124 35 1 3768 650614888 650611099 0.000000e+00 5638.0
5 TraesCS7D01G470000 chr7B 94.737 323 14 3 3750 4072 675623060 675623379 2.260000e-137 499.0
6 TraesCS7D01G470000 chr7B 96.552 145 3 1 4068 4210 650611102 650610958 5.440000e-59 239.0
7 TraesCS7D01G470000 chr7B 97.500 40 1 0 4068 4107 650611069 650611030 7.550000e-08 69.4
8 TraesCS7D01G470000 chr7A 96.058 1801 42 12 1977 3768 674815606 674813826 0.000000e+00 2905.0
9 TraesCS7D01G470000 chr7A 94.484 1251 41 9 712 1946 674816838 674815600 0.000000e+00 1903.0
10 TraesCS7D01G470000 chr7A 94.643 784 28 6 1 779 674817596 674816822 0.000000e+00 1203.0
11 TraesCS7D01G470000 chr7A 88.235 119 11 2 4094 4210 674813836 674813719 5.680000e-29 139.0
12 TraesCS7D01G470000 chr4B 97.394 307 7 1 3767 4072 63293836 63293530 4.820000e-144 521.0
13 TraesCS7D01G470000 chr4B 95.886 316 12 1 3766 4081 672301273 672300959 1.040000e-140 510.0
14 TraesCS7D01G470000 chr5B 96.203 316 10 2 3761 4074 426375453 426375768 2.240000e-142 516.0
15 TraesCS7D01G470000 chr5B 96.721 305 10 0 3767 4071 382381653 382381349 3.760000e-140 508.0
16 TraesCS7D01G470000 chr5B 96.721 305 10 0 3767 4071 491920796 491920492 3.760000e-140 508.0
17 TraesCS7D01G470000 chr5B 96.129 310 12 0 3767 4076 681629467 681629776 1.350000e-139 507.0
18 TraesCS7D01G470000 chrUn 95.327 321 13 2 3756 4075 154598429 154598110 3.760000e-140 508.0
19 TraesCS7D01G470000 chr1B 94.190 327 16 3 3748 4072 423721779 423721454 2.920000e-136 496.0
20 TraesCS7D01G470000 chr2A 75.325 462 71 22 1098 1527 15088702 15089152 9.300000e-42 182.0
21 TraesCS7D01G470000 chr2A 91.071 56 3 1 1320 1375 24909547 24909600 1.620000e-09 75.0
22 TraesCS7D01G470000 chr2A 92.453 53 2 1 1323 1375 25099422 25099372 1.620000e-09 75.0
23 TraesCS7D01G470000 chr3D 75.053 473 75 22 1098 1538 561493157 561492696 3.340000e-41 180.0
24 TraesCS7D01G470000 chr6B 78.397 287 48 10 1086 1367 205234733 205235010 1.560000e-39 174.0
25 TraesCS7D01G470000 chr6B 91.026 78 7 0 2622 2699 205235863 205235940 5.760000e-19 106.0
26 TraesCS7D01G470000 chr6A 78.125 288 48 10 1086 1367 144247521 144247799 7.240000e-38 169.0
27 TraesCS7D01G470000 chr6A 91.026 78 7 0 2622 2699 144248656 144248733 5.760000e-19 106.0
28 TraesCS7D01G470000 chr6D 77.700 287 52 8 1086 1367 115772127 115772406 9.360000e-37 165.0
29 TraesCS7D01G470000 chr6D 91.026 78 7 0 2622 2699 115773257 115773334 5.760000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G470000 chr7D 583063055 583067264 4209 True 7775.000000 7775 100.000000 1 4210 1 chr7D.!!$R1 4209
1 TraesCS7D01G470000 chr7B 650610958 650614888 3930 True 1982.133333 5638 95.915667 1 4210 3 chr7B.!!$R1 4209
2 TraesCS7D01G470000 chr7A 674813719 674817596 3877 True 1537.500000 2905 93.355000 1 4210 4 chr7A.!!$R1 4209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 230 2.361119 CAGATGATGTGGGAGCCATTTG 59.639 50.000 0.00 0.00 35.28 2.32 F
1059 1122 2.126424 GTGAGCCCGTCGTCAGTC 60.126 66.667 0.00 0.00 0.00 3.51 F
1288 1351 1.167851 TTTTCTTCATGGCAGAGGCG 58.832 50.000 0.00 0.00 42.47 5.52 F
2987 3109 2.709475 GGCAACGGCGATGATGAC 59.291 61.111 21.73 8.97 42.47 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1202 1265 1.176527 AACAAGCATGAATGGGTCGG 58.823 50.000 0.00 0.0 0.0 4.79 R
2693 2815 1.739196 GGACGCGAGGGTTTGGTAC 60.739 63.158 15.93 0.0 0.0 3.34 R
3083 3205 1.016627 CGCCGGACAATGACATGATT 58.983 50.000 5.05 0.0 0.0 2.57 R
3905 4034 0.322008 CACTCAGCCACTTCCTTCCC 60.322 60.000 0.00 0.0 0.0 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
225 230 2.361119 CAGATGATGTGGGAGCCATTTG 59.639 50.000 0.00 0.00 35.28 2.32
342 349 9.543783 AACAAGATGGATATATCATCATCATCG 57.456 33.333 23.11 16.42 42.38 3.84
343 350 8.148999 ACAAGATGGATATATCATCATCATCGG 58.851 37.037 23.11 18.54 42.38 4.18
346 353 8.148999 AGATGGATATATCATCATCATCGGTTG 58.851 37.037 23.11 0.00 42.38 3.77
347 354 7.186570 TGGATATATCATCATCATCGGTTGT 57.813 36.000 14.60 0.00 0.00 3.32
348 355 8.305046 TGGATATATCATCATCATCGGTTGTA 57.695 34.615 14.60 0.00 0.00 2.41
350 357 9.770097 GGATATATCATCATCATCGGTTGTATT 57.230 33.333 14.60 0.00 0.00 1.89
392 399 7.888021 TCAACCATAATACTGTCTGGAAAACAT 59.112 33.333 0.00 0.00 32.92 2.71
419 426 7.888021 TCTTTTGATAAGTATGACACCCACAAT 59.112 33.333 0.00 0.00 0.00 2.71
722 731 4.201783 GCTTTCACGAGTAGAGAGAGAGAC 60.202 50.000 0.00 0.00 0.00 3.36
723 732 4.538746 TTCACGAGTAGAGAGAGAGACA 57.461 45.455 0.00 0.00 0.00 3.41
779 838 4.574674 AAGCAGAGAGAGAGAGAGAGAA 57.425 45.455 0.00 0.00 0.00 2.87
1059 1122 2.126424 GTGAGCCCGTCGTCAGTC 60.126 66.667 0.00 0.00 0.00 3.51
1202 1265 3.007973 GCCCGGACAGTGAGGAGAC 62.008 68.421 0.73 0.00 0.00 3.36
1224 1287 2.489329 CGACCCATTCATGCTTGTTTCT 59.511 45.455 0.00 0.00 0.00 2.52
1239 1302 4.916983 TGTTTCTGTCCAGGTTTTGATG 57.083 40.909 0.00 0.00 0.00 3.07
1246 1309 6.748132 TCTGTCCAGGTTTTGATGATTTTTC 58.252 36.000 0.00 0.00 0.00 2.29
1272 1335 7.039270 GGGTTGTTAGTGACTTGTTGATTTTT 58.961 34.615 0.00 0.00 0.00 1.94
1288 1351 1.167851 TTTTCTTCATGGCAGAGGCG 58.832 50.000 0.00 0.00 42.47 5.52
1529 1631 4.258543 TCGGTCAAGGATGGTAAAATCAC 58.741 43.478 0.00 0.00 0.00 3.06
1606 1709 7.584122 TCATGGTTCAGTTATCTACTACTCC 57.416 40.000 0.00 0.00 34.56 3.85
1607 1710 7.355101 TCATGGTTCAGTTATCTACTACTCCT 58.645 38.462 0.00 0.00 34.56 3.69
1690 1793 9.571816 TTCATCTGGAAATATGTTACATGCATA 57.428 29.630 8.26 0.00 33.91 3.14
1766 1869 5.437060 TGCCAAGTTTACTCTCTCTTTTGT 58.563 37.500 0.00 0.00 0.00 2.83
1821 1924 8.145316 AGTAGTACTCGATCTCTTGTTCATAC 57.855 38.462 0.00 0.00 0.00 2.39
1946 2057 7.010552 ACGAGTAAGCTTCACAAAAGCATATAG 59.989 37.037 0.00 3.70 45.30 1.31
2436 2557 6.350906 AGTTTACTACTTTACTTGGCACACA 58.649 36.000 0.00 0.00 31.72 3.72
2471 2592 4.383173 CACTCATGAGCTTGGCACATATA 58.617 43.478 22.83 0.00 37.73 0.86
2987 3109 2.709475 GGCAACGGCGATGATGAC 59.291 61.111 21.73 8.97 42.47 3.06
3056 3178 4.881440 TGCATGATGGAGGCGGGC 62.881 66.667 0.00 0.00 32.52 6.13
3083 3205 2.192979 GGCGGCTCAATGGATCCA 59.807 61.111 18.88 18.88 29.49 3.41
3288 3410 9.847224 AGGTAATTAGTTACATTAATGTCCTGG 57.153 33.333 24.00 0.00 41.59 4.45
3405 3530 3.852286 TGCTGATGATGCCAATGTTTTC 58.148 40.909 0.00 0.00 0.00 2.29
3586 3715 7.847711 ATAATAGAGGAGCAACACTATGAGT 57.152 36.000 0.00 0.00 0.00 3.41
3728 3857 3.497262 GGACCGGTTGTTTCTTCTAGTTG 59.503 47.826 9.42 0.00 0.00 3.16
3740 3869 4.253685 TCTTCTAGTTGGCTTGCACATAC 58.746 43.478 0.00 0.00 0.00 2.39
3761 3890 8.844244 ACATACTAATTTTGATCCTCTGCAATC 58.156 33.333 0.00 0.00 0.00 2.67
3763 3892 7.951347 ACTAATTTTGATCCTCTGCAATCTT 57.049 32.000 0.00 0.00 0.00 2.40
3765 3894 9.118300 ACTAATTTTGATCCTCTGCAATCTTAG 57.882 33.333 0.00 0.00 31.56 2.18
3766 3895 7.951347 AATTTTGATCCTCTGCAATCTTAGT 57.049 32.000 0.00 0.00 0.00 2.24
3768 3897 7.849804 TTTTGATCCTCTGCAATCTTAGTAC 57.150 36.000 0.00 0.00 0.00 2.73
3769 3898 6.798427 TTGATCCTCTGCAATCTTAGTACT 57.202 37.500 0.00 0.00 0.00 2.73
3770 3899 6.398234 TGATCCTCTGCAATCTTAGTACTC 57.602 41.667 0.00 0.00 0.00 2.59
3771 3900 5.303078 TGATCCTCTGCAATCTTAGTACTCC 59.697 44.000 0.00 0.00 0.00 3.85
3772 3901 3.961408 TCCTCTGCAATCTTAGTACTCCC 59.039 47.826 0.00 0.00 0.00 4.30
3773 3902 3.964031 CCTCTGCAATCTTAGTACTCCCT 59.036 47.826 0.00 0.00 0.00 4.20
3774 3903 4.038642 CCTCTGCAATCTTAGTACTCCCTC 59.961 50.000 0.00 0.00 0.00 4.30
3775 3904 3.961408 TCTGCAATCTTAGTACTCCCTCC 59.039 47.826 0.00 0.00 0.00 4.30
3776 3905 3.706594 CTGCAATCTTAGTACTCCCTCCA 59.293 47.826 0.00 0.00 0.00 3.86
3777 3906 4.298626 TGCAATCTTAGTACTCCCTCCAT 58.701 43.478 0.00 0.00 0.00 3.41
3778 3907 4.721776 TGCAATCTTAGTACTCCCTCCATT 59.278 41.667 0.00 0.00 0.00 3.16
3779 3908 5.163301 TGCAATCTTAGTACTCCCTCCATTC 60.163 44.000 0.00 0.00 0.00 2.67
3780 3909 5.071115 GCAATCTTAGTACTCCCTCCATTCT 59.929 44.000 0.00 0.00 0.00 2.40
3781 3910 6.740122 GCAATCTTAGTACTCCCTCCATTCTC 60.740 46.154 0.00 0.00 0.00 2.87
3782 3911 5.735733 TCTTAGTACTCCCTCCATTCTCT 57.264 43.478 0.00 0.00 0.00 3.10
3783 3912 6.093617 TCTTAGTACTCCCTCCATTCTCTT 57.906 41.667 0.00 0.00 0.00 2.85
3784 3913 7.222180 TCTTAGTACTCCCTCCATTCTCTTA 57.778 40.000 0.00 0.00 0.00 2.10
3785 3914 7.827787 TCTTAGTACTCCCTCCATTCTCTTAT 58.172 38.462 0.00 0.00 0.00 1.73
3786 3915 8.956860 TCTTAGTACTCCCTCCATTCTCTTATA 58.043 37.037 0.00 0.00 0.00 0.98
3787 3916 8.937207 TTAGTACTCCCTCCATTCTCTTATAC 57.063 38.462 0.00 0.00 0.00 1.47
3788 3917 6.923670 AGTACTCCCTCCATTCTCTTATACA 58.076 40.000 0.00 0.00 0.00 2.29
3789 3918 7.363031 AGTACTCCCTCCATTCTCTTATACAA 58.637 38.462 0.00 0.00 0.00 2.41
3790 3919 6.739331 ACTCCCTCCATTCTCTTATACAAG 57.261 41.667 0.00 0.00 0.00 3.16
3791 3920 5.604650 ACTCCCTCCATTCTCTTATACAAGG 59.395 44.000 0.00 0.00 32.22 3.61
3792 3921 4.348168 TCCCTCCATTCTCTTATACAAGGC 59.652 45.833 0.00 0.00 32.22 4.35
3793 3922 4.505742 CCCTCCATTCTCTTATACAAGGCC 60.506 50.000 0.00 0.00 32.22 5.19
3794 3923 4.103153 CCTCCATTCTCTTATACAAGGCCA 59.897 45.833 5.01 0.00 32.22 5.36
3795 3924 5.036117 TCCATTCTCTTATACAAGGCCAC 57.964 43.478 5.01 0.00 32.22 5.01
3796 3925 4.473196 TCCATTCTCTTATACAAGGCCACA 59.527 41.667 5.01 0.00 32.22 4.17
3797 3926 5.045213 TCCATTCTCTTATACAAGGCCACAA 60.045 40.000 5.01 0.00 32.22 3.33
3798 3927 5.652014 CCATTCTCTTATACAAGGCCACAAA 59.348 40.000 5.01 0.00 32.22 2.83
3799 3928 6.404734 CCATTCTCTTATACAAGGCCACAAAC 60.405 42.308 5.01 0.00 32.22 2.93
3800 3929 5.499004 TCTCTTATACAAGGCCACAAACT 57.501 39.130 5.01 0.00 32.22 2.66
3801 3930 5.488341 TCTCTTATACAAGGCCACAAACTC 58.512 41.667 5.01 0.00 32.22 3.01
3802 3931 5.012664 TCTCTTATACAAGGCCACAAACTCA 59.987 40.000 5.01 0.00 32.22 3.41
3803 3932 5.815581 TCTTATACAAGGCCACAAACTCAT 58.184 37.500 5.01 0.00 32.22 2.90
3804 3933 6.953101 TCTTATACAAGGCCACAAACTCATA 58.047 36.000 5.01 0.00 32.22 2.15
3805 3934 7.573710 TCTTATACAAGGCCACAAACTCATAT 58.426 34.615 5.01 0.00 32.22 1.78
3806 3935 8.052748 TCTTATACAAGGCCACAAACTCATATT 58.947 33.333 5.01 0.00 32.22 1.28
3807 3936 9.337396 CTTATACAAGGCCACAAACTCATATTA 57.663 33.333 5.01 0.00 0.00 0.98
3808 3937 5.897377 ACAAGGCCACAAACTCATATTAC 57.103 39.130 5.01 0.00 0.00 1.89
3809 3938 5.321102 ACAAGGCCACAAACTCATATTACA 58.679 37.500 5.01 0.00 0.00 2.41
3810 3939 5.415701 ACAAGGCCACAAACTCATATTACAG 59.584 40.000 5.01 0.00 0.00 2.74
3811 3940 4.526970 AGGCCACAAACTCATATTACAGG 58.473 43.478 5.01 0.00 0.00 4.00
3812 3941 4.018415 AGGCCACAAACTCATATTACAGGT 60.018 41.667 5.01 0.00 0.00 4.00
3813 3942 5.190925 AGGCCACAAACTCATATTACAGGTA 59.809 40.000 5.01 0.00 0.00 3.08
3814 3943 5.296035 GGCCACAAACTCATATTACAGGTAC 59.704 44.000 0.00 0.00 0.00 3.34
3815 3944 5.296035 GCCACAAACTCATATTACAGGTACC 59.704 44.000 2.73 2.73 0.00 3.34
3816 3945 6.411376 CCACAAACTCATATTACAGGTACCA 58.589 40.000 15.94 0.00 0.00 3.25
3817 3946 6.882140 CCACAAACTCATATTACAGGTACCAA 59.118 38.462 15.94 0.00 0.00 3.67
3818 3947 7.065803 CCACAAACTCATATTACAGGTACCAAG 59.934 40.741 15.94 8.83 0.00 3.61
3819 3948 7.822334 CACAAACTCATATTACAGGTACCAAGA 59.178 37.037 15.94 0.00 0.00 3.02
3820 3949 8.548877 ACAAACTCATATTACAGGTACCAAGAT 58.451 33.333 15.94 0.00 0.00 2.40
3852 3981 5.581126 TGACTCATTTGCAAGTCAACTTT 57.419 34.783 14.99 0.00 46.59 2.66
3853 3982 5.964758 TGACTCATTTGCAAGTCAACTTTT 58.035 33.333 14.99 0.00 46.59 2.27
3854 3983 6.035843 TGACTCATTTGCAAGTCAACTTTTC 58.964 36.000 14.99 0.00 46.59 2.29
3855 3984 6.127647 TGACTCATTTGCAAGTCAACTTTTCT 60.128 34.615 14.99 0.00 46.59 2.52
3856 3985 6.633856 ACTCATTTGCAAGTCAACTTTTCTT 58.366 32.000 0.00 0.00 33.73 2.52
3857 3986 7.099120 ACTCATTTGCAAGTCAACTTTTCTTT 58.901 30.769 0.00 0.00 33.73 2.52
3858 3987 7.603784 ACTCATTTGCAAGTCAACTTTTCTTTT 59.396 29.630 0.00 0.00 33.73 2.27
3859 3988 8.321650 TCATTTGCAAGTCAACTTTTCTTTTT 57.678 26.923 0.00 0.00 33.73 1.94
3860 3989 8.229137 TCATTTGCAAGTCAACTTTTCTTTTTG 58.771 29.630 0.00 0.00 33.73 2.44
3861 3990 7.489574 TTTGCAAGTCAACTTTTCTTTTTGT 57.510 28.000 0.00 0.00 33.73 2.83
3862 3991 7.489574 TTGCAAGTCAACTTTTCTTTTTGTT 57.510 28.000 0.00 0.00 33.11 2.83
3863 3992 8.594881 TTGCAAGTCAACTTTTCTTTTTGTTA 57.405 26.923 0.00 0.00 33.11 2.41
3864 3993 8.594881 TGCAAGTCAACTTTTCTTTTTGTTAA 57.405 26.923 0.00 0.00 33.11 2.01
3865 3994 8.491950 TGCAAGTCAACTTTTCTTTTTGTTAAC 58.508 29.630 0.00 0.00 33.11 2.01
3866 3995 7.955324 GCAAGTCAACTTTTCTTTTTGTTAACC 59.045 33.333 2.48 0.00 33.11 2.85
3867 3996 7.806149 AGTCAACTTTTCTTTTTGTTAACCG 57.194 32.000 2.48 0.00 0.00 4.44
3868 3997 6.809689 AGTCAACTTTTCTTTTTGTTAACCGG 59.190 34.615 0.00 0.00 0.00 5.28
3869 3998 6.035220 GTCAACTTTTCTTTTTGTTAACCGGG 59.965 38.462 6.32 0.00 0.00 5.73
3870 3999 5.918426 ACTTTTCTTTTTGTTAACCGGGA 57.082 34.783 6.32 0.00 0.00 5.14
3871 4000 6.474140 ACTTTTCTTTTTGTTAACCGGGAT 57.526 33.333 6.32 0.00 0.00 3.85
3872 4001 6.509656 ACTTTTCTTTTTGTTAACCGGGATC 58.490 36.000 6.32 0.00 0.00 3.36
3873 4002 6.097129 ACTTTTCTTTTTGTTAACCGGGATCA 59.903 34.615 6.32 0.00 0.00 2.92
3874 4003 6.658188 TTTCTTTTTGTTAACCGGGATCAT 57.342 33.333 6.32 0.00 0.00 2.45
3875 4004 6.658188 TTCTTTTTGTTAACCGGGATCATT 57.342 33.333 6.32 0.00 0.00 2.57
3876 4005 7.762588 TTCTTTTTGTTAACCGGGATCATTA 57.237 32.000 6.32 0.00 0.00 1.90
3877 4006 7.762588 TCTTTTTGTTAACCGGGATCATTAA 57.237 32.000 6.32 0.00 0.00 1.40
3878 4007 8.356000 TCTTTTTGTTAACCGGGATCATTAAT 57.644 30.769 6.32 0.00 0.00 1.40
3879 4008 9.463902 TCTTTTTGTTAACCGGGATCATTAATA 57.536 29.630 6.32 0.00 0.00 0.98
3880 4009 9.511144 CTTTTTGTTAACCGGGATCATTAATAC 57.489 33.333 6.32 0.00 0.00 1.89
3881 4010 8.577048 TTTTGTTAACCGGGATCATTAATACA 57.423 30.769 6.32 0.00 0.00 2.29
3882 4011 7.556733 TTGTTAACCGGGATCATTAATACAC 57.443 36.000 6.32 0.00 0.00 2.90
3883 4012 6.056884 TGTTAACCGGGATCATTAATACACC 58.943 40.000 6.32 0.00 0.00 4.16
3884 4013 4.781775 AACCGGGATCATTAATACACCA 57.218 40.909 6.32 0.00 0.00 4.17
3885 4014 4.081322 ACCGGGATCATTAATACACCAC 57.919 45.455 6.32 0.00 0.00 4.16
3886 4015 3.456644 ACCGGGATCATTAATACACCACA 59.543 43.478 6.32 0.00 0.00 4.17
3887 4016 4.080243 ACCGGGATCATTAATACACCACAA 60.080 41.667 6.32 0.00 0.00 3.33
3888 4017 4.515191 CCGGGATCATTAATACACCACAAG 59.485 45.833 0.00 0.00 0.00 3.16
3889 4018 4.024048 CGGGATCATTAATACACCACAAGC 60.024 45.833 0.00 0.00 0.00 4.01
3890 4019 4.887071 GGGATCATTAATACACCACAAGCA 59.113 41.667 0.00 0.00 0.00 3.91
3891 4020 5.536161 GGGATCATTAATACACCACAAGCAT 59.464 40.000 0.00 0.00 0.00 3.79
3892 4021 6.441274 GGATCATTAATACACCACAAGCATG 58.559 40.000 0.00 0.00 0.00 4.06
3893 4022 5.247507 TCATTAATACACCACAAGCATGC 57.752 39.130 10.51 10.51 0.00 4.06
3894 4023 4.704057 TCATTAATACACCACAAGCATGCA 59.296 37.500 21.98 0.00 0.00 3.96
3895 4024 5.184671 TCATTAATACACCACAAGCATGCAA 59.815 36.000 21.98 0.09 0.00 4.08
3896 4025 3.302365 AATACACCACAAGCATGCAAC 57.698 42.857 21.98 0.00 0.00 4.17
3897 4026 1.685148 TACACCACAAGCATGCAACA 58.315 45.000 21.98 0.00 0.00 3.33
3898 4027 0.822811 ACACCACAAGCATGCAACAA 59.177 45.000 21.98 0.00 0.00 2.83
3899 4028 1.206610 ACACCACAAGCATGCAACAAA 59.793 42.857 21.98 0.00 0.00 2.83
3900 4029 2.158928 ACACCACAAGCATGCAACAAAT 60.159 40.909 21.98 0.00 0.00 2.32
3901 4030 2.222213 CACCACAAGCATGCAACAAATG 59.778 45.455 21.98 10.75 0.00 2.32
3902 4031 2.102757 ACCACAAGCATGCAACAAATGA 59.897 40.909 21.98 0.00 0.00 2.57
3903 4032 3.132160 CCACAAGCATGCAACAAATGAA 58.868 40.909 21.98 0.00 0.00 2.57
3904 4033 3.749088 CCACAAGCATGCAACAAATGAAT 59.251 39.130 21.98 0.00 0.00 2.57
3905 4034 4.377943 CCACAAGCATGCAACAAATGAATG 60.378 41.667 21.98 5.19 46.55 2.67
3906 4035 3.749088 ACAAGCATGCAACAAATGAATGG 59.251 39.130 21.98 0.00 44.30 3.16
3907 4036 2.980568 AGCATGCAACAAATGAATGGG 58.019 42.857 21.98 0.00 44.30 4.00
3908 4037 2.568062 AGCATGCAACAAATGAATGGGA 59.432 40.909 21.98 0.00 44.30 4.37
3909 4038 3.008157 AGCATGCAACAAATGAATGGGAA 59.992 39.130 21.98 0.00 44.30 3.97
3910 4039 3.372822 GCATGCAACAAATGAATGGGAAG 59.627 43.478 14.21 0.00 44.30 3.46
3911 4040 3.681593 TGCAACAAATGAATGGGAAGG 57.318 42.857 0.00 0.00 0.00 3.46
3912 4041 3.237746 TGCAACAAATGAATGGGAAGGA 58.762 40.909 0.00 0.00 0.00 3.36
3913 4042 3.645212 TGCAACAAATGAATGGGAAGGAA 59.355 39.130 0.00 0.00 0.00 3.36
3914 4043 4.248058 GCAACAAATGAATGGGAAGGAAG 58.752 43.478 0.00 0.00 0.00 3.46
3915 4044 4.262592 GCAACAAATGAATGGGAAGGAAGT 60.263 41.667 0.00 0.00 0.00 3.01
3916 4045 5.232463 CAACAAATGAATGGGAAGGAAGTG 58.768 41.667 0.00 0.00 0.00 3.16
3917 4046 3.834231 ACAAATGAATGGGAAGGAAGTGG 59.166 43.478 0.00 0.00 0.00 4.00
3918 4047 2.149973 ATGAATGGGAAGGAAGTGGC 57.850 50.000 0.00 0.00 0.00 5.01
3919 4048 1.075601 TGAATGGGAAGGAAGTGGCT 58.924 50.000 0.00 0.00 0.00 4.75
3920 4049 1.272092 TGAATGGGAAGGAAGTGGCTG 60.272 52.381 0.00 0.00 0.00 4.85
3921 4050 1.004745 GAATGGGAAGGAAGTGGCTGA 59.995 52.381 0.00 0.00 0.00 4.26
3922 4051 0.622665 ATGGGAAGGAAGTGGCTGAG 59.377 55.000 0.00 0.00 0.00 3.35
3923 4052 0.768221 TGGGAAGGAAGTGGCTGAGT 60.768 55.000 0.00 0.00 0.00 3.41
3924 4053 0.322008 GGGAAGGAAGTGGCTGAGTG 60.322 60.000 0.00 0.00 0.00 3.51
3925 4054 0.398318 GGAAGGAAGTGGCTGAGTGT 59.602 55.000 0.00 0.00 0.00 3.55
3926 4055 1.609320 GGAAGGAAGTGGCTGAGTGTC 60.609 57.143 0.00 0.00 0.00 3.67
3927 4056 1.070758 GAAGGAAGTGGCTGAGTGTCA 59.929 52.381 0.00 0.00 0.00 3.58
3928 4057 1.356124 AGGAAGTGGCTGAGTGTCAT 58.644 50.000 0.00 0.00 30.58 3.06
3929 4058 1.701847 AGGAAGTGGCTGAGTGTCATT 59.298 47.619 0.00 0.00 30.58 2.57
3930 4059 2.906389 AGGAAGTGGCTGAGTGTCATTA 59.094 45.455 0.00 0.00 30.58 1.90
3931 4060 3.521126 AGGAAGTGGCTGAGTGTCATTAT 59.479 43.478 0.00 0.00 30.58 1.28
3932 4061 3.624861 GGAAGTGGCTGAGTGTCATTATG 59.375 47.826 0.00 0.00 30.58 1.90
3933 4062 4.507710 GAAGTGGCTGAGTGTCATTATGA 58.492 43.478 0.00 0.00 30.58 2.15
3949 4078 8.425577 GTCATTATGACTACATGCTTGTAAGT 57.574 34.615 17.19 12.27 43.73 2.24
3950 4079 9.529325 GTCATTATGACTACATGCTTGTAAGTA 57.471 33.333 17.19 3.67 43.73 2.24
3977 4106 9.598517 TTAAAAAGTTTCTAGTACGAGGAAACA 57.401 29.630 26.58 13.78 46.26 2.83
3978 4107 8.672823 AAAAAGTTTCTAGTACGAGGAAACAT 57.327 30.769 26.58 19.24 46.26 2.71
3979 4108 7.886405 AAAGTTTCTAGTACGAGGAAACATC 57.114 36.000 26.58 8.39 46.26 3.06
3980 4109 6.585695 AGTTTCTAGTACGAGGAAACATCA 57.414 37.500 26.58 0.39 46.26 3.07
3981 4110 7.171630 AGTTTCTAGTACGAGGAAACATCAT 57.828 36.000 26.58 14.01 46.26 2.45
3982 4111 7.612677 AGTTTCTAGTACGAGGAAACATCATT 58.387 34.615 26.58 13.78 46.26 2.57
3983 4112 8.746530 AGTTTCTAGTACGAGGAAACATCATTA 58.253 33.333 26.58 0.00 46.26 1.90
3984 4113 9.362539 GTTTCTAGTACGAGGAAACATCATTAA 57.637 33.333 23.26 1.01 44.47 1.40
3990 4119 9.840427 AGTACGAGGAAACATCATTAATTTTTG 57.160 29.630 0.00 0.00 0.00 2.44
3991 4120 7.581011 ACGAGGAAACATCATTAATTTTTGC 57.419 32.000 0.00 0.00 0.00 3.68
3992 4121 6.589907 ACGAGGAAACATCATTAATTTTTGCC 59.410 34.615 0.00 0.00 28.59 4.52
3993 4122 6.813152 CGAGGAAACATCATTAATTTTTGCCT 59.187 34.615 0.00 0.00 28.59 4.75
3994 4123 7.009540 CGAGGAAACATCATTAATTTTTGCCTC 59.990 37.037 10.00 10.00 33.54 4.70
3995 4124 6.813152 AGGAAACATCATTAATTTTTGCCTCG 59.187 34.615 0.00 0.00 28.59 4.63
3996 4125 6.811170 GGAAACATCATTAATTTTTGCCTCGA 59.189 34.615 0.00 0.00 0.00 4.04
3997 4126 7.492344 GGAAACATCATTAATTTTTGCCTCGAT 59.508 33.333 0.00 0.00 0.00 3.59
3998 4127 8.776376 AAACATCATTAATTTTTGCCTCGATT 57.224 26.923 0.00 0.00 0.00 3.34
3999 4128 9.868277 AAACATCATTAATTTTTGCCTCGATTA 57.132 25.926 0.00 0.00 0.00 1.75
4000 4129 8.856490 ACATCATTAATTTTTGCCTCGATTAC 57.144 30.769 0.00 0.00 0.00 1.89
4001 4130 8.686334 ACATCATTAATTTTTGCCTCGATTACT 58.314 29.630 0.00 0.00 0.00 2.24
4002 4131 8.961092 CATCATTAATTTTTGCCTCGATTACTG 58.039 33.333 0.00 0.00 0.00 2.74
4003 4132 8.050778 TCATTAATTTTTGCCTCGATTACTGT 57.949 30.769 0.00 0.00 0.00 3.55
4004 4133 8.519526 TCATTAATTTTTGCCTCGATTACTGTT 58.480 29.630 0.00 0.00 0.00 3.16
4005 4134 8.586273 CATTAATTTTTGCCTCGATTACTGTTG 58.414 33.333 0.00 0.00 0.00 3.33
4006 4135 4.497473 TTTTTGCCTCGATTACTGTTGG 57.503 40.909 0.00 0.00 0.00 3.77
4007 4136 2.851263 TTGCCTCGATTACTGTTGGT 57.149 45.000 0.00 0.00 0.00 3.67
4008 4137 2.093306 TGCCTCGATTACTGTTGGTG 57.907 50.000 0.00 0.00 0.00 4.17
4009 4138 1.338674 TGCCTCGATTACTGTTGGTGG 60.339 52.381 0.00 0.00 0.00 4.61
4010 4139 1.369625 CCTCGATTACTGTTGGTGGC 58.630 55.000 0.00 0.00 0.00 5.01
4011 4140 1.369625 CTCGATTACTGTTGGTGGCC 58.630 55.000 0.00 0.00 0.00 5.36
4012 4141 0.981183 TCGATTACTGTTGGTGGCCT 59.019 50.000 3.32 0.00 0.00 5.19
4013 4142 1.349688 TCGATTACTGTTGGTGGCCTT 59.650 47.619 3.32 0.00 0.00 4.35
4014 4143 2.568062 TCGATTACTGTTGGTGGCCTTA 59.432 45.455 3.32 0.00 0.00 2.69
4015 4144 3.199071 TCGATTACTGTTGGTGGCCTTAT 59.801 43.478 3.32 0.00 0.00 1.73
4016 4145 4.406326 TCGATTACTGTTGGTGGCCTTATA 59.594 41.667 3.32 0.00 0.00 0.98
4017 4146 5.071250 TCGATTACTGTTGGTGGCCTTATAT 59.929 40.000 3.32 0.00 0.00 0.86
4018 4147 5.763204 CGATTACTGTTGGTGGCCTTATATT 59.237 40.000 3.32 0.00 0.00 1.28
4019 4148 6.293407 CGATTACTGTTGGTGGCCTTATATTG 60.293 42.308 3.32 0.00 0.00 1.90
4020 4149 4.584638 ACTGTTGGTGGCCTTATATTGA 57.415 40.909 3.32 0.00 0.00 2.57
4021 4150 5.129368 ACTGTTGGTGGCCTTATATTGAT 57.871 39.130 3.32 0.00 0.00 2.57
4022 4151 4.889409 ACTGTTGGTGGCCTTATATTGATG 59.111 41.667 3.32 0.00 0.00 3.07
4023 4152 3.636300 TGTTGGTGGCCTTATATTGATGC 59.364 43.478 3.32 0.00 0.00 3.91
4024 4153 3.591695 TGGTGGCCTTATATTGATGCA 57.408 42.857 3.32 0.00 0.00 3.96
4025 4154 3.908476 TGGTGGCCTTATATTGATGCAA 58.092 40.909 3.32 0.00 0.00 4.08
4026 4155 4.285020 TGGTGGCCTTATATTGATGCAAA 58.715 39.130 3.32 0.00 0.00 3.68
4027 4156 4.713814 TGGTGGCCTTATATTGATGCAAAA 59.286 37.500 3.32 0.00 0.00 2.44
4028 4157 5.366186 TGGTGGCCTTATATTGATGCAAAAT 59.634 36.000 3.32 0.00 0.00 1.82
4029 4158 5.697633 GGTGGCCTTATATTGATGCAAAATG 59.302 40.000 3.32 0.00 0.00 2.32
4030 4159 6.282930 GTGGCCTTATATTGATGCAAAATGT 58.717 36.000 3.32 4.60 0.00 2.71
4031 4160 7.432869 GTGGCCTTATATTGATGCAAAATGTA 58.567 34.615 3.32 3.76 0.00 2.29
4032 4161 8.090214 GTGGCCTTATATTGATGCAAAATGTAT 58.910 33.333 3.32 0.00 0.00 2.29
4033 4162 8.649591 TGGCCTTATATTGATGCAAAATGTATT 58.350 29.630 3.32 0.00 0.00 1.89
4034 4163 9.492973 GGCCTTATATTGATGCAAAATGTATTT 57.507 29.630 0.00 0.00 0.00 1.40
4049 4178 8.776376 AAAATGTATTTTTGATAGTGGCCTTG 57.224 30.769 3.32 0.00 36.65 3.61
4050 4179 7.480760 AATGTATTTTTGATAGTGGCCTTGT 57.519 32.000 3.32 0.00 0.00 3.16
4051 4180 8.588290 AATGTATTTTTGATAGTGGCCTTGTA 57.412 30.769 3.32 0.00 0.00 2.41
4052 4181 8.766994 ATGTATTTTTGATAGTGGCCTTGTAT 57.233 30.769 3.32 0.00 0.00 2.29
4053 4182 9.860650 ATGTATTTTTGATAGTGGCCTTGTATA 57.139 29.630 3.32 0.00 0.00 1.47
4054 4183 9.688091 TGTATTTTTGATAGTGGCCTTGTATAA 57.312 29.630 3.32 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.158598 ACTTTACTTATTCTTACCGTCGCAA 58.841 36.000 0.00 0.00 0.00 4.85
15 16 8.713737 ATGGAACTTTACTTATTCTTACCGTC 57.286 34.615 0.00 0.00 0.00 4.79
52 57 3.389329 TGGTGGTGTAATGCAACCATTTT 59.611 39.130 11.06 0.00 41.68 1.82
53 58 2.968574 TGGTGGTGTAATGCAACCATTT 59.031 40.909 11.06 0.00 41.68 2.32
54 59 2.603021 TGGTGGTGTAATGCAACCATT 58.397 42.857 11.06 0.00 43.74 3.16
55 60 2.300956 TGGTGGTGTAATGCAACCAT 57.699 45.000 11.06 0.00 34.13 3.55
225 230 5.571784 TGATGATTGCAGTCTGAAAATCC 57.428 39.130 18.70 9.98 0.00 3.01
336 343 9.507329 AGATGCTATTTAAATACAACCGATGAT 57.493 29.630 3.71 0.00 0.00 2.45
337 344 8.902540 AGATGCTATTTAAATACAACCGATGA 57.097 30.769 3.71 0.00 0.00 2.92
338 345 8.773645 TGAGATGCTATTTAAATACAACCGATG 58.226 33.333 3.71 0.00 0.00 3.84
339 346 8.774586 GTGAGATGCTATTTAAATACAACCGAT 58.225 33.333 3.71 0.00 0.00 4.18
340 347 7.985184 AGTGAGATGCTATTTAAATACAACCGA 59.015 33.333 3.71 0.00 0.00 4.69
341 348 8.142994 AGTGAGATGCTATTTAAATACAACCG 57.857 34.615 3.71 0.00 0.00 4.44
342 349 9.109393 TGAGTGAGATGCTATTTAAATACAACC 57.891 33.333 3.71 5.22 0.00 3.77
346 353 9.109393 TGGTTGAGTGAGATGCTATTTAAATAC 57.891 33.333 3.71 3.06 0.00 1.89
347 354 9.851686 ATGGTTGAGTGAGATGCTATTTAAATA 57.148 29.630 7.66 7.66 0.00 1.40
348 355 8.757982 ATGGTTGAGTGAGATGCTATTTAAAT 57.242 30.769 5.89 5.89 0.00 1.40
350 357 9.851686 ATTATGGTTGAGTGAGATGCTATTTAA 57.148 29.630 0.00 0.00 0.00 1.52
392 399 7.227873 TGTGGGTGTCATACTTATCAAAAGAA 58.772 34.615 0.00 0.00 0.00 2.52
419 426 9.851686 AAGCATCACTAAATTAATACCATCTGA 57.148 29.630 0.00 0.00 0.00 3.27
722 731 9.703892 TGTTTCTTTATCTTTCTTCTCTCTCTG 57.296 33.333 0.00 0.00 0.00 3.35
779 838 4.160439 TGGCTGTCTTCTTTCTCGATATGT 59.840 41.667 0.00 0.00 0.00 2.29
1179 1242 4.631740 TCACTGTCCGGGCCTCCA 62.632 66.667 2.12 0.00 0.00 3.86
1202 1265 1.176527 AACAAGCATGAATGGGTCGG 58.823 50.000 0.00 0.00 0.00 4.79
1224 1287 5.508825 CCGAAAAATCATCAAAACCTGGACA 60.509 40.000 0.00 0.00 0.00 4.02
1239 1302 5.684550 AGTCACTAACAACCCGAAAAATC 57.315 39.130 0.00 0.00 0.00 2.17
1246 1309 3.199677 TCAACAAGTCACTAACAACCCG 58.800 45.455 0.00 0.00 0.00 5.28
1272 1335 1.219124 GTCGCCTCTGCCATGAAGA 59.781 57.895 0.00 0.00 0.00 2.87
1288 1351 4.828387 ACCCTCATAATAGTCTTCGGAGTC 59.172 45.833 0.00 0.00 0.00 3.36
1603 1706 6.423302 GCAAACATGTATGTGAGATCTAGGAG 59.577 42.308 0.00 0.00 41.61 3.69
1604 1707 6.127083 TGCAAACATGTATGTGAGATCTAGGA 60.127 38.462 0.00 0.00 41.61 2.94
1605 1708 6.051074 TGCAAACATGTATGTGAGATCTAGG 58.949 40.000 0.00 0.00 41.61 3.02
1606 1709 7.725818 ATGCAAACATGTATGTGAGATCTAG 57.274 36.000 0.00 0.00 41.61 2.43
1607 1710 7.227314 GGAATGCAAACATGTATGTGAGATCTA 59.773 37.037 0.00 0.00 41.61 1.98
1620 1723 3.947910 AAGTGAGGGAATGCAAACATG 57.052 42.857 0.00 0.00 36.36 3.21
1690 1793 3.378339 CTTCGGAAAGACACTAACACGT 58.622 45.455 0.00 0.00 34.14 4.49
1821 1924 5.365619 AGGTGTAGTTTATTAAGGCGATGG 58.634 41.667 0.00 0.00 0.00 3.51
2383 2504 6.040209 TGAAATATTCTTGCAACCAAGCAT 57.960 33.333 0.00 0.00 46.38 3.79
2436 2557 4.397417 GCTCATGAGTGCTACCAAAAAGAT 59.603 41.667 23.38 0.00 0.00 2.40
2693 2815 1.739196 GGACGCGAGGGTTTGGTAC 60.739 63.158 15.93 0.00 0.00 3.34
3083 3205 1.016627 CGCCGGACAATGACATGATT 58.983 50.000 5.05 0.00 0.00 2.57
3276 3398 6.009589 TGTTTCATGACACCAGGACATTAAT 58.990 36.000 9.45 0.00 32.27 1.40
3288 3410 5.119125 GCCAATTAAGCTTGTTTCATGACAC 59.881 40.000 9.86 5.00 0.00 3.67
3521 3648 8.988934 GCACCGAACAAGAATTATGATAGAATA 58.011 33.333 0.00 0.00 0.00 1.75
3522 3649 7.498900 TGCACCGAACAAGAATTATGATAGAAT 59.501 33.333 0.00 0.00 0.00 2.40
3573 3702 9.703892 ATAAATCTCATAGACTCATAGTGTTGC 57.296 33.333 0.00 0.00 0.00 4.17
3584 3713 9.217278 GCATGACATCAATAAATCTCATAGACT 57.783 33.333 0.00 0.00 0.00 3.24
3585 3714 9.217278 AGCATGACATCAATAAATCTCATAGAC 57.783 33.333 0.00 0.00 0.00 2.59
3586 3715 9.216117 CAGCATGACATCAATAAATCTCATAGA 57.784 33.333 0.00 0.00 39.69 1.98
3608 3737 7.622893 TTATCACATGCATAACTAAACAGCA 57.377 32.000 0.00 0.00 39.79 4.41
3700 3829 3.141421 AAACAACCGGTCCAGGGGG 62.141 63.158 8.04 0.00 35.02 5.40
3728 3857 5.979517 GGATCAAAATTAGTATGTGCAAGCC 59.020 40.000 0.00 0.00 0.00 4.35
3740 3869 9.118300 ACTAAGATTGCAGAGGATCAAAATTAG 57.882 33.333 0.00 1.65 37.82 1.73
3761 3890 9.016438 GTATAAGAGAATGGAGGGAGTACTAAG 57.984 40.741 0.00 0.00 0.00 2.18
3763 3892 8.053776 TGTATAAGAGAATGGAGGGAGTACTA 57.946 38.462 0.00 0.00 0.00 1.82
3764 3893 6.923670 TGTATAAGAGAATGGAGGGAGTACT 58.076 40.000 0.00 0.00 0.00 2.73
3765 3894 7.256012 CCTTGTATAAGAGAATGGAGGGAGTAC 60.256 44.444 0.00 0.00 35.92 2.73
3766 3895 6.782988 CCTTGTATAAGAGAATGGAGGGAGTA 59.217 42.308 0.00 0.00 35.92 2.59
3767 3896 5.604650 CCTTGTATAAGAGAATGGAGGGAGT 59.395 44.000 0.00 0.00 35.92 3.85
3768 3897 5.512232 GCCTTGTATAAGAGAATGGAGGGAG 60.512 48.000 0.00 0.00 35.92 4.30
3769 3898 4.348168 GCCTTGTATAAGAGAATGGAGGGA 59.652 45.833 0.00 0.00 35.92 4.20
3770 3899 4.505742 GGCCTTGTATAAGAGAATGGAGGG 60.506 50.000 0.00 0.00 35.92 4.30
3771 3900 4.103153 TGGCCTTGTATAAGAGAATGGAGG 59.897 45.833 3.32 0.00 35.92 4.30
3772 3901 5.059833 GTGGCCTTGTATAAGAGAATGGAG 58.940 45.833 3.32 0.00 35.92 3.86
3773 3902 4.473196 TGTGGCCTTGTATAAGAGAATGGA 59.527 41.667 3.32 0.00 35.92 3.41
3774 3903 4.780815 TGTGGCCTTGTATAAGAGAATGG 58.219 43.478 3.32 0.00 35.92 3.16
3775 3904 6.375455 AGTTTGTGGCCTTGTATAAGAGAATG 59.625 38.462 3.32 0.00 35.92 2.67
3776 3905 6.485171 AGTTTGTGGCCTTGTATAAGAGAAT 58.515 36.000 3.32 0.00 35.92 2.40
3777 3906 5.876357 AGTTTGTGGCCTTGTATAAGAGAA 58.124 37.500 3.32 0.00 35.92 2.87
3778 3907 5.012664 TGAGTTTGTGGCCTTGTATAAGAGA 59.987 40.000 3.32 0.00 35.92 3.10
3779 3908 5.245531 TGAGTTTGTGGCCTTGTATAAGAG 58.754 41.667 3.32 0.00 35.92 2.85
3780 3909 5.235850 TGAGTTTGTGGCCTTGTATAAGA 57.764 39.130 3.32 0.00 35.92 2.10
3781 3910 7.807977 ATATGAGTTTGTGGCCTTGTATAAG 57.192 36.000 3.32 0.00 0.00 1.73
3782 3911 9.116067 GTAATATGAGTTTGTGGCCTTGTATAA 57.884 33.333 3.32 0.00 0.00 0.98
3783 3912 8.268605 TGTAATATGAGTTTGTGGCCTTGTATA 58.731 33.333 3.32 0.00 0.00 1.47
3784 3913 7.116075 TGTAATATGAGTTTGTGGCCTTGTAT 58.884 34.615 3.32 0.00 0.00 2.29
3785 3914 6.477253 TGTAATATGAGTTTGTGGCCTTGTA 58.523 36.000 3.32 0.00 0.00 2.41
3786 3915 5.321102 TGTAATATGAGTTTGTGGCCTTGT 58.679 37.500 3.32 0.00 0.00 3.16
3787 3916 5.163622 CCTGTAATATGAGTTTGTGGCCTTG 60.164 44.000 3.32 0.00 0.00 3.61
3788 3917 4.949856 CCTGTAATATGAGTTTGTGGCCTT 59.050 41.667 3.32 0.00 0.00 4.35
3789 3918 4.018415 ACCTGTAATATGAGTTTGTGGCCT 60.018 41.667 3.32 0.00 0.00 5.19
3790 3919 4.270008 ACCTGTAATATGAGTTTGTGGCC 58.730 43.478 0.00 0.00 0.00 5.36
3791 3920 5.296035 GGTACCTGTAATATGAGTTTGTGGC 59.704 44.000 4.06 0.00 0.00 5.01
3792 3921 6.411376 TGGTACCTGTAATATGAGTTTGTGG 58.589 40.000 14.36 0.00 0.00 4.17
3793 3922 7.822334 TCTTGGTACCTGTAATATGAGTTTGTG 59.178 37.037 14.36 0.00 0.00 3.33
3794 3923 7.913789 TCTTGGTACCTGTAATATGAGTTTGT 58.086 34.615 14.36 0.00 0.00 2.83
3795 3924 8.964476 ATCTTGGTACCTGTAATATGAGTTTG 57.036 34.615 14.36 0.00 0.00 2.93
3821 3950 9.545105 TGACTTGCAAATGAGTCATTAAATTTT 57.455 25.926 18.56 0.01 45.26 1.82
3831 3960 6.268566 AGAAAAGTTGACTTGCAAATGAGTC 58.731 36.000 8.97 8.97 42.01 3.36
3832 3961 6.212888 AGAAAAGTTGACTTGCAAATGAGT 57.787 33.333 0.00 0.00 38.44 3.41
3833 3962 7.529880 AAAGAAAAGTTGACTTGCAAATGAG 57.470 32.000 0.00 0.00 38.44 2.90
3834 3963 7.903995 AAAAGAAAAGTTGACTTGCAAATGA 57.096 28.000 0.00 0.00 38.44 2.57
3835 3964 8.016801 ACAAAAAGAAAAGTTGACTTGCAAATG 58.983 29.630 0.00 0.00 38.44 2.32
3836 3965 8.098220 ACAAAAAGAAAAGTTGACTTGCAAAT 57.902 26.923 0.00 0.00 38.44 2.32
3837 3966 7.489574 ACAAAAAGAAAAGTTGACTTGCAAA 57.510 28.000 0.00 0.00 38.44 3.68
3838 3967 7.489574 AACAAAAAGAAAAGTTGACTTGCAA 57.510 28.000 0.00 0.00 36.12 4.08
3839 3968 8.491950 GTTAACAAAAAGAAAAGTTGACTTGCA 58.508 29.630 0.00 0.00 36.12 4.08
3840 3969 7.955324 GGTTAACAAAAAGAAAAGTTGACTTGC 59.045 33.333 8.10 0.00 36.12 4.01
3841 3970 8.159709 CGGTTAACAAAAAGAAAAGTTGACTTG 58.840 33.333 8.10 0.00 36.12 3.16
3842 3971 7.329962 CCGGTTAACAAAAAGAAAAGTTGACTT 59.670 33.333 8.10 0.00 37.91 3.01
3843 3972 6.809689 CCGGTTAACAAAAAGAAAAGTTGACT 59.190 34.615 8.10 0.00 32.91 3.41
3844 3973 6.035220 CCCGGTTAACAAAAAGAAAAGTTGAC 59.965 38.462 8.10 0.00 31.94 3.18
3845 3974 6.071503 TCCCGGTTAACAAAAAGAAAAGTTGA 60.072 34.615 8.10 0.00 0.00 3.18
3846 3975 6.100668 TCCCGGTTAACAAAAAGAAAAGTTG 58.899 36.000 8.10 0.00 0.00 3.16
3847 3976 6.283544 TCCCGGTTAACAAAAAGAAAAGTT 57.716 33.333 8.10 0.00 0.00 2.66
3848 3977 5.918426 TCCCGGTTAACAAAAAGAAAAGT 57.082 34.783 8.10 0.00 0.00 2.66
3849 3978 6.508777 TGATCCCGGTTAACAAAAAGAAAAG 58.491 36.000 8.10 0.00 0.00 2.27
3850 3979 6.466885 TGATCCCGGTTAACAAAAAGAAAA 57.533 33.333 8.10 0.00 0.00 2.29
3851 3980 6.658188 ATGATCCCGGTTAACAAAAAGAAA 57.342 33.333 8.10 0.00 0.00 2.52
3852 3981 6.658188 AATGATCCCGGTTAACAAAAAGAA 57.342 33.333 8.10 0.00 0.00 2.52
3853 3982 7.762588 TTAATGATCCCGGTTAACAAAAAGA 57.237 32.000 8.10 0.00 0.00 2.52
3854 3983 9.511144 GTATTAATGATCCCGGTTAACAAAAAG 57.489 33.333 8.10 0.00 0.00 2.27
3855 3984 9.021807 TGTATTAATGATCCCGGTTAACAAAAA 57.978 29.630 8.10 0.00 0.00 1.94
3856 3985 8.460428 GTGTATTAATGATCCCGGTTAACAAAA 58.540 33.333 8.10 0.00 0.00 2.44
3857 3986 7.067251 GGTGTATTAATGATCCCGGTTAACAAA 59.933 37.037 8.10 0.00 0.00 2.83
3858 3987 6.543100 GGTGTATTAATGATCCCGGTTAACAA 59.457 38.462 8.10 0.00 0.00 2.83
3859 3988 6.056884 GGTGTATTAATGATCCCGGTTAACA 58.943 40.000 8.10 0.00 0.00 2.41
3860 3989 6.017687 GTGGTGTATTAATGATCCCGGTTAAC 60.018 42.308 0.00 0.00 0.00 2.01
3861 3990 6.056884 GTGGTGTATTAATGATCCCGGTTAA 58.943 40.000 0.00 0.00 0.00 2.01
3862 3991 5.130643 TGTGGTGTATTAATGATCCCGGTTA 59.869 40.000 0.00 0.00 0.00 2.85
3863 3992 4.080243 TGTGGTGTATTAATGATCCCGGTT 60.080 41.667 0.00 0.00 0.00 4.44
3864 3993 3.456644 TGTGGTGTATTAATGATCCCGGT 59.543 43.478 0.00 0.00 0.00 5.28
3865 3994 4.079980 TGTGGTGTATTAATGATCCCGG 57.920 45.455 0.00 0.00 0.00 5.73
3866 3995 4.024048 GCTTGTGGTGTATTAATGATCCCG 60.024 45.833 0.00 0.00 0.00 5.14
3867 3996 4.887071 TGCTTGTGGTGTATTAATGATCCC 59.113 41.667 0.00 0.00 0.00 3.85
3868 3997 6.441274 CATGCTTGTGGTGTATTAATGATCC 58.559 40.000 0.00 0.00 0.00 3.36
3869 3998 5.916883 GCATGCTTGTGGTGTATTAATGATC 59.083 40.000 11.37 0.00 0.00 2.92
3870 3999 5.360429 TGCATGCTTGTGGTGTATTAATGAT 59.640 36.000 20.33 0.00 0.00 2.45
3871 4000 4.704057 TGCATGCTTGTGGTGTATTAATGA 59.296 37.500 20.33 0.00 0.00 2.57
3872 4001 4.996344 TGCATGCTTGTGGTGTATTAATG 58.004 39.130 20.33 0.00 0.00 1.90
3873 4002 5.047448 TGTTGCATGCTTGTGGTGTATTAAT 60.047 36.000 20.33 0.00 0.00 1.40
3874 4003 4.279420 TGTTGCATGCTTGTGGTGTATTAA 59.721 37.500 20.33 0.00 0.00 1.40
3875 4004 3.823304 TGTTGCATGCTTGTGGTGTATTA 59.177 39.130 20.33 0.00 0.00 0.98
3876 4005 2.627221 TGTTGCATGCTTGTGGTGTATT 59.373 40.909 20.33 0.00 0.00 1.89
3877 4006 2.237643 TGTTGCATGCTTGTGGTGTAT 58.762 42.857 20.33 0.00 0.00 2.29
3878 4007 1.685148 TGTTGCATGCTTGTGGTGTA 58.315 45.000 20.33 0.00 0.00 2.90
3879 4008 0.822811 TTGTTGCATGCTTGTGGTGT 59.177 45.000 20.33 0.00 0.00 4.16
3880 4009 1.937278 TTTGTTGCATGCTTGTGGTG 58.063 45.000 20.33 0.00 0.00 4.17
3881 4010 2.102757 TCATTTGTTGCATGCTTGTGGT 59.897 40.909 20.33 0.00 0.00 4.16
3882 4011 2.756829 TCATTTGTTGCATGCTTGTGG 58.243 42.857 20.33 2.78 0.00 4.17
3883 4012 4.377943 CCATTCATTTGTTGCATGCTTGTG 60.378 41.667 20.33 9.14 28.73 3.33
3884 4013 3.749088 CCATTCATTTGTTGCATGCTTGT 59.251 39.130 20.33 0.00 28.73 3.16
3885 4014 3.126171 CCCATTCATTTGTTGCATGCTTG 59.874 43.478 20.33 7.06 28.73 4.01
3886 4015 3.008157 TCCCATTCATTTGTTGCATGCTT 59.992 39.130 20.33 0.00 28.73 3.91
3887 4016 2.568062 TCCCATTCATTTGTTGCATGCT 59.432 40.909 20.33 0.00 28.73 3.79
3888 4017 2.975266 TCCCATTCATTTGTTGCATGC 58.025 42.857 11.82 11.82 28.73 4.06
3889 4018 3.936453 CCTTCCCATTCATTTGTTGCATG 59.064 43.478 0.00 0.00 0.00 4.06
3890 4019 3.839490 TCCTTCCCATTCATTTGTTGCAT 59.161 39.130 0.00 0.00 0.00 3.96
3891 4020 3.237746 TCCTTCCCATTCATTTGTTGCA 58.762 40.909 0.00 0.00 0.00 4.08
3892 4021 3.959535 TCCTTCCCATTCATTTGTTGC 57.040 42.857 0.00 0.00 0.00 4.17
3893 4022 5.232463 CACTTCCTTCCCATTCATTTGTTG 58.768 41.667 0.00 0.00 0.00 3.33
3894 4023 4.284234 CCACTTCCTTCCCATTCATTTGTT 59.716 41.667 0.00 0.00 0.00 2.83
3895 4024 3.834231 CCACTTCCTTCCCATTCATTTGT 59.166 43.478 0.00 0.00 0.00 2.83
3896 4025 3.368739 GCCACTTCCTTCCCATTCATTTG 60.369 47.826 0.00 0.00 0.00 2.32
3897 4026 2.833943 GCCACTTCCTTCCCATTCATTT 59.166 45.455 0.00 0.00 0.00 2.32
3898 4027 2.043526 AGCCACTTCCTTCCCATTCATT 59.956 45.455 0.00 0.00 0.00 2.57
3899 4028 1.642762 AGCCACTTCCTTCCCATTCAT 59.357 47.619 0.00 0.00 0.00 2.57
3900 4029 1.075601 AGCCACTTCCTTCCCATTCA 58.924 50.000 0.00 0.00 0.00 2.57
3901 4030 1.004745 TCAGCCACTTCCTTCCCATTC 59.995 52.381 0.00 0.00 0.00 2.67
3902 4031 1.005215 CTCAGCCACTTCCTTCCCATT 59.995 52.381 0.00 0.00 0.00 3.16
3903 4032 0.622665 CTCAGCCACTTCCTTCCCAT 59.377 55.000 0.00 0.00 0.00 4.00
3904 4033 0.768221 ACTCAGCCACTTCCTTCCCA 60.768 55.000 0.00 0.00 0.00 4.37
3905 4034 0.322008 CACTCAGCCACTTCCTTCCC 60.322 60.000 0.00 0.00 0.00 3.97
3906 4035 0.398318 ACACTCAGCCACTTCCTTCC 59.602 55.000 0.00 0.00 0.00 3.46
3907 4036 1.070758 TGACACTCAGCCACTTCCTTC 59.929 52.381 0.00 0.00 0.00 3.46
3908 4037 1.131638 TGACACTCAGCCACTTCCTT 58.868 50.000 0.00 0.00 0.00 3.36
3909 4038 1.356124 ATGACACTCAGCCACTTCCT 58.644 50.000 0.00 0.00 0.00 3.36
3910 4039 2.191128 AATGACACTCAGCCACTTCC 57.809 50.000 0.00 0.00 0.00 3.46
3911 4040 4.331168 GTCATAATGACACTCAGCCACTTC 59.669 45.833 0.00 0.00 46.22 3.01
3912 4041 4.256920 GTCATAATGACACTCAGCCACTT 58.743 43.478 0.00 0.00 46.22 3.16
3913 4042 3.866651 GTCATAATGACACTCAGCCACT 58.133 45.455 0.00 0.00 46.22 4.00
3919 4048 7.794833 ACAAGCATGTAGTCATAATGACACTCA 60.795 37.037 0.00 0.00 41.65 3.41
3920 4049 6.536582 ACAAGCATGTAGTCATAATGACACTC 59.463 38.462 0.00 0.00 41.65 3.51
3921 4050 6.409704 ACAAGCATGTAGTCATAATGACACT 58.590 36.000 0.00 0.00 41.65 3.55
3922 4051 6.668541 ACAAGCATGTAGTCATAATGACAC 57.331 37.500 0.00 0.00 41.65 3.67
3923 4052 8.040727 ACTTACAAGCATGTAGTCATAATGACA 58.959 33.333 1.63 0.00 43.98 3.58
3924 4053 8.425577 ACTTACAAGCATGTAGTCATAATGAC 57.574 34.615 1.63 0.00 42.72 3.06
3951 4080 9.598517 TGTTTCCTCGTACTAGAAACTTTTTAA 57.401 29.630 22.16 7.91 46.07 1.52
3952 4081 9.768662 ATGTTTCCTCGTACTAGAAACTTTTTA 57.231 29.630 22.16 10.34 46.07 1.52
3953 4082 8.672823 ATGTTTCCTCGTACTAGAAACTTTTT 57.327 30.769 22.16 10.11 46.07 1.94
3954 4083 7.929785 TGATGTTTCCTCGTACTAGAAACTTTT 59.070 33.333 22.16 13.19 46.07 2.27
3955 4084 7.439381 TGATGTTTCCTCGTACTAGAAACTTT 58.561 34.615 22.16 14.75 46.07 2.66
3956 4085 6.989659 TGATGTTTCCTCGTACTAGAAACTT 58.010 36.000 22.16 18.51 46.07 2.66
3957 4086 6.585695 TGATGTTTCCTCGTACTAGAAACT 57.414 37.500 22.16 13.61 46.07 2.66
3958 4087 7.829378 AATGATGTTTCCTCGTACTAGAAAC 57.171 36.000 18.13 18.13 46.09 2.78
3964 4093 9.840427 CAAAAATTAATGATGTTTCCTCGTACT 57.160 29.630 0.00 0.00 0.00 2.73
3965 4094 8.583765 GCAAAAATTAATGATGTTTCCTCGTAC 58.416 33.333 0.00 0.00 0.00 3.67
3966 4095 7.757624 GGCAAAAATTAATGATGTTTCCTCGTA 59.242 33.333 0.00 0.00 0.00 3.43
3967 4096 6.589907 GGCAAAAATTAATGATGTTTCCTCGT 59.410 34.615 0.00 0.00 0.00 4.18
3968 4097 6.813152 AGGCAAAAATTAATGATGTTTCCTCG 59.187 34.615 0.00 0.00 0.00 4.63
3969 4098 7.009540 CGAGGCAAAAATTAATGATGTTTCCTC 59.990 37.037 0.00 0.00 36.77 3.71
3970 4099 6.813152 CGAGGCAAAAATTAATGATGTTTCCT 59.187 34.615 0.00 0.00 31.07 3.36
3971 4100 6.811170 TCGAGGCAAAAATTAATGATGTTTCC 59.189 34.615 0.00 0.00 0.00 3.13
3972 4101 7.810766 TCGAGGCAAAAATTAATGATGTTTC 57.189 32.000 0.00 0.00 0.00 2.78
3973 4102 8.776376 AATCGAGGCAAAAATTAATGATGTTT 57.224 26.923 0.00 0.00 0.00 2.83
3974 4103 9.301153 GTAATCGAGGCAAAAATTAATGATGTT 57.699 29.630 0.00 0.00 0.00 2.71
3975 4104 8.686334 AGTAATCGAGGCAAAAATTAATGATGT 58.314 29.630 0.00 0.00 0.00 3.06
3976 4105 8.961092 CAGTAATCGAGGCAAAAATTAATGATG 58.039 33.333 0.00 0.00 33.69 3.07
3977 4106 8.686334 ACAGTAATCGAGGCAAAAATTAATGAT 58.314 29.630 12.44 0.00 34.81 2.45
3978 4107 8.050778 ACAGTAATCGAGGCAAAAATTAATGA 57.949 30.769 12.44 0.00 34.81 2.57
3979 4108 8.586273 CAACAGTAATCGAGGCAAAAATTAATG 58.414 33.333 0.00 0.00 36.36 1.90
3980 4109 7.759433 CCAACAGTAATCGAGGCAAAAATTAAT 59.241 33.333 0.00 0.00 0.00 1.40
3981 4110 7.087639 CCAACAGTAATCGAGGCAAAAATTAA 58.912 34.615 0.00 0.00 0.00 1.40
3982 4111 6.207810 ACCAACAGTAATCGAGGCAAAAATTA 59.792 34.615 0.00 0.00 0.00 1.40
3983 4112 5.010617 ACCAACAGTAATCGAGGCAAAAATT 59.989 36.000 0.00 0.00 0.00 1.82
3984 4113 4.522789 ACCAACAGTAATCGAGGCAAAAAT 59.477 37.500 0.00 0.00 0.00 1.82
3985 4114 3.886505 ACCAACAGTAATCGAGGCAAAAA 59.113 39.130 0.00 0.00 0.00 1.94
3986 4115 3.252215 CACCAACAGTAATCGAGGCAAAA 59.748 43.478 0.00 0.00 0.00 2.44
3987 4116 2.811431 CACCAACAGTAATCGAGGCAAA 59.189 45.455 0.00 0.00 0.00 3.68
3988 4117 2.422597 CACCAACAGTAATCGAGGCAA 58.577 47.619 0.00 0.00 0.00 4.52
3989 4118 1.338674 CCACCAACAGTAATCGAGGCA 60.339 52.381 0.00 0.00 0.00 4.75
3990 4119 1.369625 CCACCAACAGTAATCGAGGC 58.630 55.000 0.00 0.00 0.00 4.70
3991 4120 1.369625 GCCACCAACAGTAATCGAGG 58.630 55.000 0.00 0.00 0.00 4.63
3992 4121 1.066143 AGGCCACCAACAGTAATCGAG 60.066 52.381 5.01 0.00 0.00 4.04
3993 4122 0.981183 AGGCCACCAACAGTAATCGA 59.019 50.000 5.01 0.00 0.00 3.59
3994 4123 1.821216 AAGGCCACCAACAGTAATCG 58.179 50.000 5.01 0.00 0.00 3.34
3995 4124 6.770785 TCAATATAAGGCCACCAACAGTAATC 59.229 38.462 5.01 0.00 0.00 1.75
3996 4125 6.668645 TCAATATAAGGCCACCAACAGTAAT 58.331 36.000 5.01 0.00 0.00 1.89
3997 4126 6.068461 TCAATATAAGGCCACCAACAGTAA 57.932 37.500 5.01 0.00 0.00 2.24
3998 4127 5.702065 TCAATATAAGGCCACCAACAGTA 57.298 39.130 5.01 0.00 0.00 2.74
3999 4128 4.584638 TCAATATAAGGCCACCAACAGT 57.415 40.909 5.01 0.00 0.00 3.55
4000 4129 4.261741 GCATCAATATAAGGCCACCAACAG 60.262 45.833 5.01 0.00 0.00 3.16
4001 4130 3.636300 GCATCAATATAAGGCCACCAACA 59.364 43.478 5.01 0.00 0.00 3.33
4002 4131 3.636300 TGCATCAATATAAGGCCACCAAC 59.364 43.478 5.01 0.00 0.00 3.77
4003 4132 3.908476 TGCATCAATATAAGGCCACCAA 58.092 40.909 5.01 0.00 0.00 3.67
4004 4133 3.591695 TGCATCAATATAAGGCCACCA 57.408 42.857 5.01 0.00 0.00 4.17
4005 4134 4.935352 TTTGCATCAATATAAGGCCACC 57.065 40.909 5.01 0.00 0.00 4.61
4006 4135 6.282930 ACATTTTGCATCAATATAAGGCCAC 58.717 36.000 5.01 0.00 0.00 5.01
4007 4136 6.482898 ACATTTTGCATCAATATAAGGCCA 57.517 33.333 5.01 0.00 0.00 5.36
4008 4137 9.492973 AAATACATTTTGCATCAATATAAGGCC 57.507 29.630 0.00 0.00 0.00 5.19
4024 4153 8.374743 ACAAGGCCACTATCAAAAATACATTTT 58.625 29.630 5.01 0.00 41.93 1.82
4025 4154 7.906327 ACAAGGCCACTATCAAAAATACATTT 58.094 30.769 5.01 0.00 0.00 2.32
4026 4155 7.480760 ACAAGGCCACTATCAAAAATACATT 57.519 32.000 5.01 0.00 0.00 2.71
4027 4156 8.766994 ATACAAGGCCACTATCAAAAATACAT 57.233 30.769 5.01 0.00 0.00 2.29
4028 4157 9.688091 TTATACAAGGCCACTATCAAAAATACA 57.312 29.630 5.01 0.00 0.00 2.29
4030 4159 9.349713 CCTTATACAAGGCCACTATCAAAAATA 57.650 33.333 5.01 0.00 44.90 1.40
4031 4160 8.237811 CCTTATACAAGGCCACTATCAAAAAT 57.762 34.615 5.01 0.00 44.90 1.82
4032 4161 7.639113 CCTTATACAAGGCCACTATCAAAAA 57.361 36.000 5.01 0.00 44.90 1.94
4046 4175 4.660771 ACTCCCTCCATTCCCTTATACAAG 59.339 45.833 0.00 0.00 0.00 3.16
4047 4176 4.641868 ACTCCCTCCATTCCCTTATACAA 58.358 43.478 0.00 0.00 0.00 2.41
4048 4177 4.295905 ACTCCCTCCATTCCCTTATACA 57.704 45.455 0.00 0.00 0.00 2.29
4049 4178 8.625467 AATATACTCCCTCCATTCCCTTATAC 57.375 38.462 0.00 0.00 0.00 1.47
4050 4179 9.280456 GAAATATACTCCCTCCATTCCCTTATA 57.720 37.037 0.00 0.00 0.00 0.98
4051 4180 7.970061 AGAAATATACTCCCTCCATTCCCTTAT 59.030 37.037 0.00 0.00 0.00 1.73
4052 4181 7.321530 AGAAATATACTCCCTCCATTCCCTTA 58.678 38.462 0.00 0.00 0.00 2.69
4053 4182 6.161167 AGAAATATACTCCCTCCATTCCCTT 58.839 40.000 0.00 0.00 0.00 3.95
4054 4183 5.742743 AGAAATATACTCCCTCCATTCCCT 58.257 41.667 0.00 0.00 0.00 4.20
4055 4184 6.455690 AAGAAATATACTCCCTCCATTCCC 57.544 41.667 0.00 0.00 0.00 3.97
4056 4185 7.998964 TCAAAAGAAATATACTCCCTCCATTCC 59.001 37.037 0.00 0.00 0.00 3.01
4057 4186 8.980481 TCAAAAGAAATATACTCCCTCCATTC 57.020 34.615 0.00 0.00 0.00 2.67
4058 4187 8.001292 CCTCAAAAGAAATATACTCCCTCCATT 58.999 37.037 0.00 0.00 0.00 3.16
4059 4188 7.350921 TCCTCAAAAGAAATATACTCCCTCCAT 59.649 37.037 0.00 0.00 0.00 3.41
4060 4189 6.676632 TCCTCAAAAGAAATATACTCCCTCCA 59.323 38.462 0.00 0.00 0.00 3.86
4061 4190 7.138054 TCCTCAAAAGAAATATACTCCCTCC 57.862 40.000 0.00 0.00 0.00 4.30
4062 4191 9.634021 ATTTCCTCAAAAGAAATATACTCCCTC 57.366 33.333 0.00 0.00 41.10 4.30
4063 4192 9.997172 AATTTCCTCAAAAGAAATATACTCCCT 57.003 29.630 0.00 0.00 41.84 4.20
4092 4221 9.174166 TCCTCAAAAGAAATATACTAAGGTTGC 57.826 33.333 0.00 0.00 0.00 4.17
4183 4314 9.383519 GACTAATTGTGACTCATAATTCAGGAA 57.616 33.333 14.94 0.44 36.73 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.