Multiple sequence alignment - TraesCS7D01G469800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G469800 chr7D 100.000 4704 0 0 1 4704 583035887 583031184 0.000000e+00 8687.0
1 TraesCS7D01G469800 chr7D 91.069 1534 101 19 3203 4704 582676720 582675191 0.000000e+00 2041.0
2 TraesCS7D01G469800 chr7D 90.743 1534 94 25 3203 4704 582599508 582597991 0.000000e+00 2002.0
3 TraesCS7D01G469800 chr7D 91.783 1071 70 9 230 1293 582603631 582602572 0.000000e+00 1474.0
4 TraesCS7D01G469800 chr7D 91.612 1073 74 8 230 1297 582680402 582679341 0.000000e+00 1469.0
5 TraesCS7D01G469800 chr7D 88.495 1043 89 9 2118 3147 584592175 584591151 0.000000e+00 1232.0
6 TraesCS7D01G469800 chr7D 92.041 779 44 6 1339 2116 582679351 582678590 0.000000e+00 1079.0
7 TraesCS7D01G469800 chr7D 90.573 785 63 7 506 1283 584276845 584277625 0.000000e+00 1029.0
8 TraesCS7D01G469800 chr7D 95.088 570 27 1 1341 1909 582602580 582602011 0.000000e+00 896.0
9 TraesCS7D01G469800 chr7D 87.776 769 75 11 3948 4702 623038760 623039523 0.000000e+00 881.0
10 TraesCS7D01G469800 chr7D 94.580 572 23 6 2118 2689 582600969 582600406 0.000000e+00 878.0
11 TraesCS7D01G469800 chr7D 94.251 574 24 7 2118 2689 582678184 582677618 0.000000e+00 869.0
12 TraesCS7D01G469800 chr7D 93.060 562 38 1 1342 1902 584277630 584278191 0.000000e+00 821.0
13 TraesCS7D01G469800 chr7D 93.817 469 21 1 2687 3147 582600102 582599634 0.000000e+00 699.0
14 TraesCS7D01G469800 chr7D 92.964 469 25 1 2687 3147 582677314 582676846 0.000000e+00 676.0
15 TraesCS7D01G469800 chr7D 87.879 396 32 3 2765 3144 586025554 586025949 7.180000e-123 451.0
16 TraesCS7D01G469800 chr7D 94.142 239 12 1 1 237 582745298 582745060 3.460000e-96 363.0
17 TraesCS7D01G469800 chr7D 91.860 258 21 0 1339 1596 584603200 584602943 1.240000e-95 361.0
18 TraesCS7D01G469800 chr7D 95.122 205 10 0 1919 2123 586107477 586107681 1.630000e-84 324.0
19 TraesCS7D01G469800 chr7D 94.634 205 11 0 1919 2123 586113702 586113906 7.600000e-83 318.0
20 TraesCS7D01G469800 chr7D 94.146 205 12 0 1919 2123 586119976 586120180 3.530000e-81 313.0
21 TraesCS7D01G469800 chr7D 90.830 229 18 2 1 226 582545977 582545749 2.130000e-78 303.0
22 TraesCS7D01G469800 chr7D 91.346 208 18 0 3990 4197 611395462 611395669 7.700000e-73 285.0
23 TraesCS7D01G469800 chr7D 82.007 289 48 4 221 506 136569446 136569733 4.700000e-60 243.0
24 TraesCS7D01G469800 chr7A 90.752 1276 101 9 26 1293 674683955 674682689 0.000000e+00 1687.0
25 TraesCS7D01G469800 chr7A 93.167 1039 50 7 2123 3147 674681402 674680371 0.000000e+00 1506.0
26 TraesCS7D01G469800 chr7A 90.177 1018 63 10 3202 4183 674680149 674679133 0.000000e+00 1291.0
27 TraesCS7D01G469800 chr7A 88.609 913 70 16 2239 3144 675874297 675875182 0.000000e+00 1079.0
28 TraesCS7D01G469800 chr7A 88.171 913 74 16 2239 3144 675912172 675913057 0.000000e+00 1057.0
29 TraesCS7D01G469800 chr7A 90.797 728 55 6 506 1223 675907957 675908682 0.000000e+00 963.0
30 TraesCS7D01G469800 chr7A 90.720 722 57 6 506 1223 675871018 675871733 0.000000e+00 953.0
31 TraesCS7D01G469800 chr7A 94.655 580 26 4 1341 1920 674682697 674682123 0.000000e+00 894.0
32 TraesCS7D01G469800 chr7A 88.787 544 50 7 3204 3738 675875367 675875908 0.000000e+00 656.0
33 TraesCS7D01G469800 chr7A 88.787 544 50 7 3204 3738 675913242 675913783 0.000000e+00 656.0
34 TraesCS7D01G469800 chr7A 87.156 545 58 5 3205 3739 676995102 676995644 4.020000e-170 608.0
35 TraesCS7D01G469800 chr7A 88.259 494 44 7 2598 3079 708469254 708468763 3.160000e-161 579.0
36 TraesCS7D01G469800 chr7A 88.969 417 35 6 506 919 708495785 708495377 5.430000e-139 505.0
37 TraesCS7D01G469800 chr7A 90.860 372 21 8 1554 1920 676993112 676993475 1.970000e-133 486.0
38 TraesCS7D01G469800 chr7A 89.008 373 27 8 1554 1920 677440811 677441175 2.580000e-122 449.0
39 TraesCS7D01G469800 chr7A 92.105 228 15 2 1 226 674527347 674527121 7.600000e-83 318.0
40 TraesCS7D01G469800 chr7A 91.593 226 16 2 1 224 674523078 674522854 4.570000e-80 309.0
41 TraesCS7D01G469800 chr7A 93.627 204 13 0 1919 2122 708487424 708487221 5.910000e-79 305.0
42 TraesCS7D01G469800 chr7A 91.189 227 15 3 5 226 674738419 674738193 2.130000e-78 303.0
43 TraesCS7D01G469800 chr7A 91.189 227 15 3 5 226 674753153 674752927 2.130000e-78 303.0
44 TraesCS7D01G469800 chr7A 93.596 203 13 0 1919 2121 677614555 677614757 2.130000e-78 303.0
45 TraesCS7D01G469800 chr7A 91.111 225 16 3 1919 2139 674682015 674681791 7.650000e-78 302.0
46 TraesCS7D01G469800 chr7A 93.171 205 14 0 1919 2123 676993590 676993794 7.650000e-78 302.0
47 TraesCS7D01G469800 chr7A 93.171 205 14 0 1919 2123 677441235 677441439 7.650000e-78 302.0
48 TraesCS7D01G469800 chr7A 92.105 190 15 0 1341 1530 708494980 708494791 7.760000e-68 268.0
49 TraesCS7D01G469800 chr7A 91.257 183 12 2 1341 1523 676992933 676993111 3.640000e-61 246.0
50 TraesCS7D01G469800 chr7A 90.164 183 18 0 1341 1523 677440628 677440810 6.080000e-59 239.0
51 TraesCS7D01G469800 chr7A 97.959 49 1 0 1523 1571 708493741 708493693 8.390000e-13 86.1
52 TraesCS7D01G469800 chr7B 88.868 1042 101 6 2118 3147 652973191 652972153 0.000000e+00 1267.0
53 TraesCS7D01G469800 chr7B 88.964 1042 91 10 2118 3147 652400212 652399183 0.000000e+00 1266.0
54 TraesCS7D01G469800 chr7B 89.244 1032 73 12 2126 3147 652173122 652172119 0.000000e+00 1256.0
55 TraesCS7D01G469800 chr7B 87.812 1042 94 16 2118 3147 652438397 652437377 0.000000e+00 1190.0
56 TraesCS7D01G469800 chr7B 91.540 792 60 6 506 1293 651873656 651872868 0.000000e+00 1085.0
57 TraesCS7D01G469800 chr7B 91.560 782 57 6 506 1283 652255945 652255169 0.000000e+00 1070.0
58 TraesCS7D01G469800 chr7B 89.677 804 63 7 504 1293 652402244 652401447 0.000000e+00 1007.0
59 TraesCS7D01G469800 chr7B 89.677 804 63 7 504 1293 652440479 652439682 0.000000e+00 1007.0
60 TraesCS7D01G469800 chr7B 88.792 803 71 7 504 1293 652975207 652974411 0.000000e+00 966.0
61 TraesCS7D01G469800 chr7B 87.046 826 66 19 506 1293 708676829 708676007 0.000000e+00 894.0
62 TraesCS7D01G469800 chr7B 88.388 732 73 9 3971 4697 654325559 654324835 0.000000e+00 870.0
63 TraesCS7D01G469800 chr7B 90.937 651 50 3 2311 2953 652056220 652055571 0.000000e+00 867.0
64 TraesCS7D01G469800 chr7B 92.055 579 39 7 1344 1920 652060718 652060145 0.000000e+00 808.0
65 TraesCS7D01G469800 chr7B 91.769 571 35 7 717 1283 652175107 652174545 0.000000e+00 784.0
66 TraesCS7D01G469800 chr7B 91.222 581 41 7 1341 1919 652174541 652173969 0.000000e+00 782.0
67 TraesCS7D01G469800 chr7B 84.065 797 69 23 3202 3952 652053361 652052577 0.000000e+00 715.0
68 TraesCS7D01G469800 chr7B 91.423 513 42 1 1341 1851 708676015 708675503 0.000000e+00 702.0
69 TraesCS7D01G469800 chr7B 89.111 551 46 7 3202 3741 651872409 651871862 0.000000e+00 673.0
70 TraesCS7D01G469800 chr7B 90.514 506 42 6 781 1283 652061227 652060725 0.000000e+00 664.0
71 TraesCS7D01G469800 chr7B 88.073 545 55 4 3205 3739 656303929 656304473 5.130000e-179 638.0
72 TraesCS7D01G469800 chr7B 85.458 557 61 14 1590 2139 652974116 652973573 3.180000e-156 562.0
73 TraesCS7D01G469800 chr7B 85.882 510 60 9 281 786 652062611 652062110 2.490000e-147 532.0
74 TraesCS7D01G469800 chr7B 87.859 453 35 6 846 1293 722089967 722089530 9.030000e-142 514.0
75 TraesCS7D01G469800 chr7B 87.665 454 35 11 846 1293 656301383 656301821 4.200000e-140 508.0
76 TraesCS7D01G469800 chr7B 91.667 372 20 6 1554 1917 656301982 656302350 5.430000e-139 505.0
77 TraesCS7D01G469800 chr7B 91.592 333 18 6 1590 1920 652401202 652400878 7.180000e-123 451.0
78 TraesCS7D01G469800 chr7B 88.472 373 24 11 1554 1920 722089356 722088997 2.600000e-117 433.0
79 TraesCS7D01G469800 chr7B 89.851 335 20 8 1590 1920 652439387 652439063 7.280000e-113 418.0
80 TraesCS7D01G469800 chr7B 89.021 337 33 4 506 839 656300891 656301226 9.420000e-112 414.0
81 TraesCS7D01G469800 chr7B 86.471 340 37 4 506 839 722090460 722090124 9.620000e-97 364.0
82 TraesCS7D01G469800 chr7B 93.333 225 11 3 1919 2139 652057873 652057649 3.510000e-86 329.0
83 TraesCS7D01G469800 chr7B 93.659 205 13 0 1919 2123 652400818 652400614 1.640000e-79 307.0
84 TraesCS7D01G469800 chr7B 91.556 225 15 3 1919 2139 652439003 652438779 1.640000e-79 307.0
85 TraesCS7D01G469800 chr7B 94.472 199 11 0 1919 2117 656302421 656302619 1.640000e-79 307.0
86 TraesCS7D01G469800 chr7B 93.103 203 14 0 1919 2121 722088883 722088681 9.900000e-77 298.0
87 TraesCS7D01G469800 chr7B 83.446 296 37 8 223 506 378343584 378343289 1.000000e-66 265.0
88 TraesCS7D01G469800 chr7B 89.516 124 10 2 106 226 650295272 650295149 2.270000e-33 154.0
89 TraesCS7D01G469800 chr7B 89.516 124 10 2 106 226 650301419 650301296 2.270000e-33 154.0
90 TraesCS7D01G469800 chr7B 89.516 124 10 2 106 226 650318191 650318068 2.270000e-33 154.0
91 TraesCS7D01G469800 chr7B 88.710 124 11 2 106 226 650362463 650362340 1.050000e-31 148.0
92 TraesCS7D01G469800 chr7B 88.710 124 11 2 106 226 650409446 650409323 1.050000e-31 148.0
93 TraesCS7D01G469800 chr7B 91.429 105 9 0 1492 1596 652439650 652439546 1.360000e-30 145.0
94 TraesCS7D01G469800 chr7B 91.429 105 9 0 1492 1596 652974379 652974275 1.360000e-30 145.0
95 TraesCS7D01G469800 chr7B 88.889 117 10 2 113 226 650456179 650456063 1.760000e-29 141.0
96 TraesCS7D01G469800 chr7B 89.286 84 6 2 22 102 650340292 650340209 8.330000e-18 102.0
97 TraesCS7D01G469800 chr5B 90.212 756 67 6 3949 4704 669560213 669559465 0.000000e+00 979.0
98 TraesCS7D01G469800 chr5B 81.356 295 42 7 224 506 455809771 455809478 1.320000e-55 228.0
99 TraesCS7D01G469800 chr5B 74.403 293 67 8 221 509 605016555 605016267 8.270000e-23 119.0
100 TraesCS7D01G469800 chr4D 89.750 761 73 4 3944 4704 458153919 458153164 0.000000e+00 968.0
101 TraesCS7D01G469800 chr5A 89.556 766 68 9 3947 4704 109366282 109367043 0.000000e+00 961.0
102 TraesCS7D01G469800 chr3B 89.673 765 59 9 3948 4704 448221746 448220994 0.000000e+00 957.0
103 TraesCS7D01G469800 chr3B 88.757 756 77 6 3949 4704 152255734 152256481 0.000000e+00 918.0
104 TraesCS7D01G469800 chr3B 75.427 293 67 5 219 508 723278303 723278013 2.280000e-28 137.0
105 TraesCS7D01G469800 chr2D 87.199 789 62 10 506 1283 107838585 107837825 0.000000e+00 861.0
106 TraesCS7D01G469800 chr2D 92.338 509 37 1 1343 1851 107837819 107837313 0.000000e+00 723.0
107 TraesCS7D01G469800 chr2D 88.095 546 57 5 3202 3739 107821538 107820993 3.970000e-180 641.0
108 TraesCS7D01G469800 chr2D 88.290 427 39 7 2663 3078 107835329 107834903 7.030000e-138 501.0
109 TraesCS7D01G469800 chr2D 79.720 286 54 4 225 508 45509271 45508988 2.220000e-48 204.0
110 TraesCS7D01G469800 chr6B 88.115 732 70 14 3985 4704 43156929 43157655 0.000000e+00 854.0
111 TraesCS7D01G469800 chr6B 79.130 230 47 1 219 447 583289821 583290050 1.750000e-34 158.0
112 TraesCS7D01G469800 chr6D 86.894 763 86 9 3949 4704 2715397 2714642 0.000000e+00 843.0
113 TraesCS7D01G469800 chr6D 82.443 131 23 0 376 506 206567436 206567566 1.070000e-21 115.0
114 TraesCS7D01G469800 chr2B 82.781 302 48 4 223 521 526499209 526499509 2.790000e-67 267.0
115 TraesCS7D01G469800 chr1B 82.759 290 39 9 225 508 530055457 530055173 1.010000e-61 248.0
116 TraesCS7D01G469800 chr1B 79.322 295 45 12 223 504 535023852 535023561 4.800000e-45 193.0
117 TraesCS7D01G469800 chr5D 76.976 291 64 3 221 509 490520246 490519957 3.770000e-36 163.0
118 TraesCS7D01G469800 chr5D 77.740 292 42 10 219 509 358213456 358213187 1.750000e-34 158.0
119 TraesCS7D01G469800 chr5D 79.279 111 20 3 221 329 528396549 528396658 1.820000e-09 75.0
120 TraesCS7D01G469800 chr3D 77.228 303 53 11 218 506 102207664 102207964 3.770000e-36 163.0
121 TraesCS7D01G469800 chr3D 74.426 305 59 10 219 507 91681307 91681608 3.850000e-21 113.0
122 TraesCS7D01G469800 chr4B 82.249 169 27 3 343 509 48620040 48619873 4.910000e-30 143.0
123 TraesCS7D01G469800 chr4B 80.000 110 21 1 222 330 393511372 393511481 3.900000e-11 80.5
124 TraesCS7D01G469800 chr1A 82.857 140 20 3 372 509 401680590 401680453 6.390000e-24 122.0
125 TraesCS7D01G469800 chr4A 90.217 92 9 0 418 509 492348025 492348116 2.300000e-23 121.0
126 TraesCS7D01G469800 chr4A 78.698 169 33 3 343 509 568913390 568913557 4.980000e-20 110.0
127 TraesCS7D01G469800 chr6A 80.916 131 25 0 376 506 276297015 276296885 2.320000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G469800 chr7D 583031184 583035887 4703 True 8687.000000 8687 100.000000 1 4704 1 chr7D.!!$R3 4703
1 TraesCS7D01G469800 chr7D 584591151 584592175 1024 True 1232.000000 1232 88.495000 2118 3147 1 chr7D.!!$R4 1029
2 TraesCS7D01G469800 chr7D 582675191 582680402 5211 True 1226.800000 2041 92.387400 230 4704 5 chr7D.!!$R7 4474
3 TraesCS7D01G469800 chr7D 582597991 582603631 5640 True 1189.800000 2002 93.202200 230 4704 5 chr7D.!!$R6 4474
4 TraesCS7D01G469800 chr7D 584276845 584278191 1346 False 925.000000 1029 91.816500 506 1902 2 chr7D.!!$F8 1396
5 TraesCS7D01G469800 chr7D 623038760 623039523 763 False 881.000000 881 87.776000 3948 4702 1 chr7D.!!$F7 754
6 TraesCS7D01G469800 chr7A 674679133 674683955 4822 True 1136.000000 1687 91.972400 26 4183 5 chr7A.!!$R7 4157
7 TraesCS7D01G469800 chr7A 675871018 675875908 4890 False 896.000000 1079 89.372000 506 3738 3 chr7A.!!$F2 3232
8 TraesCS7D01G469800 chr7A 675907957 675913783 5826 False 892.000000 1057 89.251667 506 3738 3 chr7A.!!$F3 3232
9 TraesCS7D01G469800 chr7A 676992933 676995644 2711 False 410.500000 608 90.611000 1341 3739 4 chr7A.!!$F4 2398
10 TraesCS7D01G469800 chr7A 677440628 677441439 811 False 330.000000 449 90.781000 1341 2123 3 chr7A.!!$F5 782
11 TraesCS7D01G469800 chr7A 708493693 708495785 2092 True 286.366667 505 93.011000 506 1571 3 chr7A.!!$R8 1065
12 TraesCS7D01G469800 chr7B 652255169 652255945 776 True 1070.000000 1070 91.560000 506 1283 1 chr7B.!!$R9 777
13 TraesCS7D01G469800 chr7B 652172119 652175107 2988 True 940.666667 1256 90.745000 717 3147 3 chr7B.!!$R13 2430
14 TraesCS7D01G469800 chr7B 651871862 651873656 1794 True 879.000000 1085 90.325500 506 3741 2 chr7B.!!$R11 3235
15 TraesCS7D01G469800 chr7B 654324835 654325559 724 True 870.000000 870 88.388000 3971 4697 1 chr7B.!!$R10 726
16 TraesCS7D01G469800 chr7B 708675503 708676829 1326 True 798.000000 894 89.234500 506 1851 2 chr7B.!!$R17 1345
17 TraesCS7D01G469800 chr7B 652399183 652402244 3061 True 757.750000 1266 90.973000 504 3147 4 chr7B.!!$R14 2643
18 TraesCS7D01G469800 chr7B 652972153 652975207 3054 True 735.000000 1267 88.636750 504 3147 4 chr7B.!!$R16 2643
19 TraesCS7D01G469800 chr7B 652052577 652062611 10034 True 652.500000 867 89.464333 281 3952 6 chr7B.!!$R12 3671
20 TraesCS7D01G469800 chr7B 652437377 652440479 3102 True 613.400000 1190 90.065000 504 3147 5 chr7B.!!$R15 2643
21 TraesCS7D01G469800 chr7B 656300891 656304473 3582 False 474.400000 638 90.179600 506 3739 5 chr7B.!!$F1 3233
22 TraesCS7D01G469800 chr7B 722088681 722090460 1779 True 402.250000 514 88.976250 506 2121 4 chr7B.!!$R18 1615
23 TraesCS7D01G469800 chr5B 669559465 669560213 748 True 979.000000 979 90.212000 3949 4704 1 chr5B.!!$R3 755
24 TraesCS7D01G469800 chr4D 458153164 458153919 755 True 968.000000 968 89.750000 3944 4704 1 chr4D.!!$R1 760
25 TraesCS7D01G469800 chr5A 109366282 109367043 761 False 961.000000 961 89.556000 3947 4704 1 chr5A.!!$F1 757
26 TraesCS7D01G469800 chr3B 448220994 448221746 752 True 957.000000 957 89.673000 3948 4704 1 chr3B.!!$R1 756
27 TraesCS7D01G469800 chr3B 152255734 152256481 747 False 918.000000 918 88.757000 3949 4704 1 chr3B.!!$F1 755
28 TraesCS7D01G469800 chr2D 107834903 107838585 3682 True 695.000000 861 89.275667 506 3078 3 chr2D.!!$R3 2572
29 TraesCS7D01G469800 chr2D 107820993 107821538 545 True 641.000000 641 88.095000 3202 3739 1 chr2D.!!$R2 537
30 TraesCS7D01G469800 chr6B 43156929 43157655 726 False 854.000000 854 88.115000 3985 4704 1 chr6B.!!$F1 719
31 TraesCS7D01G469800 chr6D 2714642 2715397 755 True 843.000000 843 86.894000 3949 4704 1 chr6D.!!$R1 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.033642 TACGTGTCAATCCGTGCCAA 59.966 50.000 0.00 0.0 37.91 4.52 F
1380 2516 0.391130 TATCACAGACCGTGCCTTGC 60.391 55.000 0.00 0.0 45.92 4.01 F
3072 15575 1.224592 GCGTGGGATCCTCACCATT 59.775 57.895 20.96 0.0 39.30 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 2645 0.107268 TGCATCATGACTGGATCGGG 59.893 55.0 0.00 0.0 0.00 5.14 R
3189 15889 0.108041 AGTCCGACGGTCTCTCTCTC 60.108 60.0 14.79 0.0 0.00 3.20 R
4620 17650 0.178767 CAGATGCGGGATGAACTCCA 59.821 55.0 0.00 0.0 46.98 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.942761 AGGTTGTAACTGACGTAAAGGA 57.057 40.909 0.00 0.00 0.00 3.36
22 23 5.280654 AGGTTGTAACTGACGTAAAGGAA 57.719 39.130 0.00 0.00 0.00 3.36
23 24 5.673514 AGGTTGTAACTGACGTAAAGGAAA 58.326 37.500 0.00 0.00 0.00 3.13
24 25 6.114767 AGGTTGTAACTGACGTAAAGGAAAA 58.885 36.000 0.00 0.00 0.00 2.29
32 33 8.907222 AACTGACGTAAAGGAAAATTTAGGTA 57.093 30.769 0.00 0.00 41.38 3.08
35 36 7.452562 TGACGTAAAGGAAAATTTAGGTACCT 58.547 34.615 20.57 20.57 41.38 3.08
37 38 6.656270 ACGTAAAGGAAAATTTAGGTACCTGG 59.344 38.462 25.33 0.00 40.23 4.45
45 46 6.829229 AAATTTAGGTACCTGGTGTTTAGC 57.171 37.500 25.33 0.00 0.00 3.09
63 64 6.922957 TGTTTAGCAAATGTGTGGAATTCTTC 59.077 34.615 5.23 0.00 0.00 2.87
66 67 4.759693 AGCAAATGTGTGGAATTCTTCGTA 59.240 37.500 5.23 0.00 0.00 3.43
126 127 0.318360 CCAGCTGAACGTACGTGTCA 60.318 55.000 23.57 23.03 0.00 3.58
137 138 0.033642 TACGTGTCAATCCGTGCCAA 59.966 50.000 0.00 0.00 37.91 4.52
142 143 1.271325 TGTCAATCCGTGCCAATGAGT 60.271 47.619 0.00 0.00 0.00 3.41
211 214 8.731275 TCAAAACCATACAACTCCTATATGTG 57.269 34.615 0.00 0.00 0.00 3.21
212 215 8.325787 TCAAAACCATACAACTCCTATATGTGT 58.674 33.333 0.00 0.00 0.00 3.72
217 220 6.495181 CCATACAACTCCTATATGTGTCTCCT 59.505 42.308 0.00 0.00 0.00 3.69
235 238 0.469917 CTGTGACCCTTCCACACACT 59.530 55.000 0.00 0.00 39.36 3.55
276 279 4.604156 TGGTGCCCACATTAATTATGACA 58.396 39.130 0.40 0.00 37.69 3.58
289 292 1.072266 TATGACAGCTGGGGTGGTTT 58.928 50.000 19.93 0.00 35.13 3.27
291 294 1.150536 GACAGCTGGGGTGGTTTGA 59.849 57.895 19.93 0.00 35.13 2.69
293 296 1.152777 CAGCTGGGGTGGTTTGACA 60.153 57.895 5.57 0.00 0.00 3.58
332 335 2.920912 GGACACCGAGGGGACACA 60.921 66.667 0.00 0.00 36.97 3.72
333 336 2.291043 GGACACCGAGGGGACACAT 61.291 63.158 0.00 0.00 36.97 3.21
370 374 4.792702 CGATACATTTCAGCGCAATTTTGA 59.207 37.500 11.47 0.00 0.00 2.69
419 423 1.240256 CGAACGGTTTTGGGGAATGA 58.760 50.000 0.00 0.00 0.00 2.57
428 432 4.467084 GGGGAATGAGTCGGCGCA 62.467 66.667 10.83 0.00 0.00 6.09
563 567 5.173673 GCTGAAACACACACATACAACAATG 59.826 40.000 0.00 0.00 0.00 2.82
648 656 4.082354 ACAAGCGAGGTAGGTTAGTACAAG 60.082 45.833 0.00 0.00 0.00 3.16
715 733 3.711086 CATGTCCTTCAGACTACATCCG 58.289 50.000 0.00 0.00 46.46 4.18
818 1727 3.746045 ACATGTTACGGACTCTTGTGT 57.254 42.857 0.00 0.00 0.00 3.72
987 2098 8.079809 TCTTTTCTTCAACGTTCAAAAACTTCT 58.920 29.630 0.00 0.00 32.95 2.85
1283 2417 2.092323 CGGCATCCATCGGATACTCTA 58.908 52.381 0.00 0.00 40.98 2.43
1284 2418 2.159366 CGGCATCCATCGGATACTCTAC 60.159 54.545 0.00 0.00 40.98 2.59
1285 2419 2.826128 GGCATCCATCGGATACTCTACA 59.174 50.000 0.00 0.00 40.98 2.74
1286 2420 3.367498 GGCATCCATCGGATACTCTACAC 60.367 52.174 0.00 0.00 40.98 2.90
1287 2421 3.255888 GCATCCATCGGATACTCTACACA 59.744 47.826 0.00 0.00 40.98 3.72
1288 2422 4.799678 CATCCATCGGATACTCTACACAC 58.200 47.826 0.00 0.00 40.98 3.82
1289 2423 3.893521 TCCATCGGATACTCTACACACA 58.106 45.455 0.00 0.00 0.00 3.72
1290 2424 3.630769 TCCATCGGATACTCTACACACAC 59.369 47.826 0.00 0.00 0.00 3.82
1291 2425 3.380320 CCATCGGATACTCTACACACACA 59.620 47.826 0.00 0.00 0.00 3.72
1292 2426 4.352039 CATCGGATACTCTACACACACAC 58.648 47.826 0.00 0.00 0.00 3.82
1293 2427 2.417586 TCGGATACTCTACACACACACG 59.582 50.000 0.00 0.00 0.00 4.49
1294 2428 2.527100 GGATACTCTACACACACACGC 58.473 52.381 0.00 0.00 0.00 5.34
1295 2429 2.094906 GGATACTCTACACACACACGCA 60.095 50.000 0.00 0.00 0.00 5.24
1296 2430 2.410785 TACTCTACACACACACGCAC 57.589 50.000 0.00 0.00 0.00 5.34
1297 2431 0.594028 ACTCTACACACACACGCACG 60.594 55.000 0.00 0.00 0.00 5.34
1298 2432 1.876453 CTCTACACACACACGCACGC 61.876 60.000 0.00 0.00 0.00 5.34
1299 2433 2.202756 TACACACACACGCACGCA 60.203 55.556 0.00 0.00 0.00 5.24
1300 2434 2.410935 CTACACACACACGCACGCAC 62.411 60.000 0.00 0.00 0.00 5.34
1301 2435 4.918060 CACACACACGCACGCACG 62.918 66.667 0.00 0.00 39.50 5.34
1347 2481 2.518349 CACCCACCCACACACACC 60.518 66.667 0.00 0.00 0.00 4.16
1380 2516 0.391130 TATCACAGACCGTGCCTTGC 60.391 55.000 0.00 0.00 45.92 4.01
1482 2618 3.572255 GCTACTGCTATTCCTACTGCTCT 59.428 47.826 0.00 0.00 36.03 4.09
1635 3992 7.393841 TTTTAATAAACATGAGGGGTTACCG 57.606 36.000 0.00 0.00 46.96 4.02
1841 4207 8.413229 GCCAAGTTAGCTTAAAATCCATTCATA 58.587 33.333 0.00 0.00 32.87 2.15
1970 6954 6.845782 GGATTTTTGACGATGAAAGCAAAAAC 59.154 34.615 12.65 8.24 46.48 2.43
2083 7067 3.919216 ACAGATCGTATATGGCTTGAGC 58.081 45.455 0.00 0.00 41.14 4.26
2167 8849 5.240623 ACATGAATTGTGTCACCGTGTAATT 59.759 36.000 0.00 0.00 37.11 1.40
2458 12012 1.435256 ACTGCCAAGTGTCCCTAAGT 58.565 50.000 0.00 0.00 34.48 2.24
2531 12088 8.742777 GGAGTACCATAAACGGTATCATGTATA 58.257 37.037 0.00 0.00 43.35 1.47
2895 13548 2.994995 TGTCGGGCGGAGACACAT 60.995 61.111 5.23 0.00 42.91 3.21
3069 15572 2.187946 CAGCGTGGGATCCTCACC 59.812 66.667 20.96 15.58 0.00 4.02
3072 15575 1.224592 GCGTGGGATCCTCACCATT 59.775 57.895 20.96 0.00 39.30 3.16
3098 15637 3.006940 TCACAACGACTCAACTTGCTTT 58.993 40.909 0.00 0.00 0.00 3.51
3144 15683 2.661195 CGCCCAACGTCATTCAAATTTC 59.339 45.455 0.00 0.00 36.87 2.17
3147 15686 4.158384 CCCAACGTCATTCAAATTTCTCG 58.842 43.478 0.00 0.00 0.00 4.04
3344 16261 2.228103 CCTAATAGTCATCGTAGCCGCA 59.772 50.000 0.00 0.00 0.00 5.69
3596 16548 4.410228 ACCTGAGCAGCAATTATAGAGGAA 59.590 41.667 0.00 0.00 0.00 3.36
3614 16566 2.353704 GGAATGTGCTTTGGCTTTACCC 60.354 50.000 0.00 0.00 39.59 3.69
3615 16567 2.309136 ATGTGCTTTGGCTTTACCCT 57.691 45.000 0.00 0.00 39.59 4.34
3724 16679 1.881973 TCTGAGATTGTTGCTGTTGCC 59.118 47.619 0.00 0.00 38.71 4.52
3725 16680 0.592637 TGAGATTGTTGCTGTTGCCG 59.407 50.000 0.00 0.00 38.71 5.69
3863 16836 2.203001 CGCGTCCATATGGTGCCA 60.203 61.111 25.62 6.48 35.36 4.92
3888 16861 1.182667 CACCTCTACGGATGGTCACA 58.817 55.000 0.00 0.00 36.31 3.58
3988 16978 2.606826 GTCCCGGTTCCAGAGGGT 60.607 66.667 0.00 0.00 45.27 4.34
4166 17156 1.544759 CGGGACTAAAAGGCAACCACT 60.545 52.381 0.00 0.00 37.17 4.00
4171 17165 1.459592 CTAAAAGGCAACCACTCGTCG 59.540 52.381 0.00 0.00 37.17 5.12
4215 17225 4.407329 TTTTAAAGGGAGGTTTAGGGGG 57.593 45.455 0.00 0.00 0.00 5.40
4220 17230 1.078115 GGGAGGTTTAGGGGGTTTGA 58.922 55.000 0.00 0.00 0.00 2.69
4296 17315 1.074752 CTCTCTTTCTCCGTGCTTGC 58.925 55.000 0.00 0.00 0.00 4.01
4340 17359 2.608546 GAGAGAACTCGACGCTAGCTAA 59.391 50.000 13.93 0.00 33.32 3.09
4434 17460 0.250124 TCCGTGCTTGGTCGAACAAT 60.250 50.000 17.75 0.00 0.00 2.71
4435 17461 0.110238 CCGTGCTTGGTCGAACAATG 60.110 55.000 17.75 11.88 0.00 2.82
4566 17596 3.319755 CGTGTTTAGGTATGACGTGGTT 58.680 45.455 0.00 0.00 0.00 3.67
4575 17605 5.721232 AGGTATGACGTGGTTAAGAAAGAG 58.279 41.667 0.00 0.00 0.00 2.85
4620 17650 2.473816 CTCGTATGCGATCATGTGGTT 58.526 47.619 6.30 0.00 46.80 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.989551 TTTCCTTTACGTCAGTTACAACC 57.010 39.130 0.00 0.00 0.00 3.77
2 3 8.845942 AAATTTTCCTTTACGTCAGTTACAAC 57.154 30.769 0.00 0.00 0.00 3.32
4 5 8.776470 CCTAAATTTTCCTTTACGTCAGTTACA 58.224 33.333 0.00 0.00 0.00 2.41
5 6 8.777413 ACCTAAATTTTCCTTTACGTCAGTTAC 58.223 33.333 0.00 0.00 0.00 2.50
6 7 8.907222 ACCTAAATTTTCCTTTACGTCAGTTA 57.093 30.769 0.00 0.00 0.00 2.24
7 8 7.812690 ACCTAAATTTTCCTTTACGTCAGTT 57.187 32.000 0.00 0.00 0.00 3.16
8 9 7.388776 GGTACCTAAATTTTCCTTTACGTCAGT 59.611 37.037 4.06 0.00 0.00 3.41
9 10 7.605309 AGGTACCTAAATTTTCCTTTACGTCAG 59.395 37.037 14.41 0.00 0.00 3.51
10 11 7.388500 CAGGTACCTAAATTTTCCTTTACGTCA 59.612 37.037 15.80 0.00 0.00 4.35
11 12 7.148356 CCAGGTACCTAAATTTTCCTTTACGTC 60.148 40.741 15.80 0.00 0.00 4.34
12 13 6.656270 CCAGGTACCTAAATTTTCCTTTACGT 59.344 38.462 15.80 0.00 0.00 3.57
13 14 6.656270 ACCAGGTACCTAAATTTTCCTTTACG 59.344 38.462 15.80 0.00 0.00 3.18
14 15 7.449395 ACACCAGGTACCTAAATTTTCCTTTAC 59.551 37.037 15.80 0.00 0.00 2.01
15 16 7.528675 ACACCAGGTACCTAAATTTTCCTTTA 58.471 34.615 15.80 0.00 0.00 1.85
16 17 6.378745 ACACCAGGTACCTAAATTTTCCTTT 58.621 36.000 15.80 0.00 0.00 3.11
17 18 5.960704 ACACCAGGTACCTAAATTTTCCTT 58.039 37.500 15.80 0.00 0.00 3.36
18 19 5.594199 ACACCAGGTACCTAAATTTTCCT 57.406 39.130 15.80 0.00 0.00 3.36
19 20 6.659745 AAACACCAGGTACCTAAATTTTCC 57.340 37.500 15.80 0.00 0.00 3.13
20 21 7.040271 TGCTAAACACCAGGTACCTAAATTTTC 60.040 37.037 15.80 8.86 0.00 2.29
21 22 6.778559 TGCTAAACACCAGGTACCTAAATTTT 59.221 34.615 15.80 13.82 0.00 1.82
22 23 6.308566 TGCTAAACACCAGGTACCTAAATTT 58.691 36.000 15.80 14.55 0.00 1.82
23 24 5.883180 TGCTAAACACCAGGTACCTAAATT 58.117 37.500 15.80 8.29 0.00 1.82
24 25 5.508280 TGCTAAACACCAGGTACCTAAAT 57.492 39.130 15.80 0.00 0.00 1.40
32 33 3.068024 CACACATTTGCTAAACACCAGGT 59.932 43.478 0.00 0.00 0.00 4.00
35 36 3.291584 TCCACACATTTGCTAAACACCA 58.708 40.909 0.00 0.00 0.00 4.17
37 38 6.215845 AGAATTCCACACATTTGCTAAACAC 58.784 36.000 0.65 0.00 0.00 3.32
45 46 5.631026 CCTACGAAGAATTCCACACATTTG 58.369 41.667 0.65 0.00 43.81 2.32
63 64 0.521291 CACCATTGGTTGTGCCTACG 59.479 55.000 5.34 0.00 38.35 3.51
108 109 1.483316 TTGACACGTACGTTCAGCTG 58.517 50.000 20.23 7.63 0.00 4.24
116 117 1.680105 GGCACGGATTGACACGTACG 61.680 60.000 15.01 15.01 42.04 3.67
126 127 1.453155 GTGACTCATTGGCACGGATT 58.547 50.000 0.00 0.00 45.75 3.01
211 214 0.321996 GTGGAAGGGTCACAGGAGAC 59.678 60.000 0.00 0.00 37.80 3.36
212 215 0.105194 TGTGGAAGGGTCACAGGAGA 60.105 55.000 0.00 0.00 39.83 3.71
217 220 0.180171 CAGTGTGTGGAAGGGTCACA 59.820 55.000 0.00 0.00 42.11 3.58
262 265 4.889409 CACCCCAGCTGTCATAATTAATGT 59.111 41.667 13.81 0.00 36.89 2.71
276 279 1.151450 CTGTCAAACCACCCCAGCT 59.849 57.895 0.00 0.00 0.00 4.24
289 292 2.046988 CCCGCATGTCTGCTGTCA 60.047 61.111 0.00 0.00 46.65 3.58
340 343 1.831389 CTGAAATGTATCGGCGCGGG 61.831 60.000 15.48 2.58 0.00 6.13
402 406 2.235891 GACTCATTCCCCAAAACCGTT 58.764 47.619 0.00 0.00 0.00 4.44
411 415 3.757248 ATGCGCCGACTCATTCCCC 62.757 63.158 4.18 0.00 0.00 4.81
419 423 3.545124 TTGTCCCAATGCGCCGACT 62.545 57.895 4.18 0.00 0.00 4.18
439 443 2.559330 GTCGCCGCGGACAAAAAT 59.441 55.556 33.48 0.00 36.91 1.82
585 593 6.769608 TTCCACTTCATGAATATCGAATCG 57.230 37.500 8.96 0.00 0.00 3.34
648 656 9.708222 CTAAGTAAATATGACATCAAGTTGCAC 57.292 33.333 0.00 0.00 0.00 4.57
818 1727 5.996644 TCTCCTAGTGTTTTCCAACAGAAA 58.003 37.500 0.00 0.00 43.83 2.52
872 1931 5.181245 CCTAGTGTGTTCCACCATAAAACAG 59.819 44.000 0.00 0.00 45.74 3.16
1113 2234 3.292460 ACGACTTAAGCTGCTAGGAGAT 58.708 45.455 16.44 5.63 0.00 2.75
1283 2417 3.860125 GTGCGTGCGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
1284 2418 4.918060 CGTGCGTGCGTGTGTGTG 62.918 66.667 0.00 0.00 0.00 3.82
1325 2459 4.596585 GTGTGGGTGGGTGGGTGG 62.597 72.222 0.00 0.00 0.00 4.61
1326 2460 3.814906 TGTGTGGGTGGGTGGGTG 61.815 66.667 0.00 0.00 0.00 4.61
1327 2461 3.816090 GTGTGTGGGTGGGTGGGT 61.816 66.667 0.00 0.00 0.00 4.51
1328 2462 3.814906 TGTGTGTGGGTGGGTGGG 61.815 66.667 0.00 0.00 0.00 4.61
1329 2463 2.518349 GTGTGTGTGGGTGGGTGG 60.518 66.667 0.00 0.00 0.00 4.61
1330 2464 2.518349 GGTGTGTGTGGGTGGGTG 60.518 66.667 0.00 0.00 0.00 4.61
1331 2465 3.816090 GGGTGTGTGTGGGTGGGT 61.816 66.667 0.00 0.00 0.00 4.51
1332 2466 4.596585 GGGGTGTGTGTGGGTGGG 62.597 72.222 0.00 0.00 0.00 4.61
1333 2467 1.710996 TTAGGGGTGTGTGTGGGTGG 61.711 60.000 0.00 0.00 0.00 4.61
1334 2468 0.250727 CTTAGGGGTGTGTGTGGGTG 60.251 60.000 0.00 0.00 0.00 4.61
1335 2469 2.064242 GCTTAGGGGTGTGTGTGGGT 62.064 60.000 0.00 0.00 0.00 4.51
1336 2470 1.303317 GCTTAGGGGTGTGTGTGGG 60.303 63.158 0.00 0.00 0.00 4.61
1337 2471 0.606401 CTGCTTAGGGGTGTGTGTGG 60.606 60.000 0.00 0.00 0.00 4.17
1347 2481 4.274459 GTCTGTGATAATTGCTGCTTAGGG 59.726 45.833 0.00 0.00 0.00 3.53
1482 2618 3.689347 AGCACCAGCAACAATCTCATAA 58.311 40.909 0.00 0.00 45.49 1.90
1509 2645 0.107268 TGCATCATGACTGGATCGGG 59.893 55.000 0.00 0.00 0.00 5.14
1577 3770 6.747414 ATGTGGTATTACATAAGAGCCAGA 57.253 37.500 0.00 0.00 39.40 3.86
1841 4207 3.012934 ACCACTAGGCAAACACAAGTT 57.987 42.857 0.00 0.00 37.86 2.66
1970 6954 6.427853 TGGCTCCAAACATCATATTTAGATCG 59.572 38.462 0.00 0.00 0.00 3.69
2083 7067 9.655769 CTTCTAAAATTTGTATCACATCGATGG 57.344 33.333 28.09 17.13 35.39 3.51
2145 8827 5.957842 AATTACACGGTGACACAATTCAT 57.042 34.783 16.29 0.00 0.00 2.57
2531 12088 9.533253 CAAAATCATTCAAAAAGTCTAGTTGGT 57.467 29.630 0.00 0.00 0.00 3.67
2556 12113 6.489700 TCTCTTTCCTCATTTAATTGTGTGCA 59.510 34.615 0.00 0.00 0.00 4.57
2617 12524 7.647715 GCATGACACAAAGTACTACAACATTTT 59.352 33.333 0.00 0.00 0.00 1.82
2731 13384 4.931661 TGGGGAGTATCATTTACTCGTC 57.068 45.455 6.67 3.14 43.53 4.20
2823 13476 2.901249 ACAGTAATACGTGGCATCACC 58.099 47.619 0.00 0.00 40.65 4.02
2857 13510 0.753867 TGAAACGTCACTGTGGGCTA 59.246 50.000 8.11 0.00 0.00 3.93
2895 13548 2.359169 GGCACCGGATCTCAGTCCA 61.359 63.158 9.46 0.00 38.21 4.02
2956 15458 7.171337 TGCATTCTTTTGTAGAAGGAAAATTGC 59.829 33.333 3.63 2.69 45.26 3.56
3069 15572 4.449068 AGTTGAGTCGTTGTGAGCTAAATG 59.551 41.667 0.00 0.00 0.00 2.32
3072 15575 3.728076 AGTTGAGTCGTTGTGAGCTAA 57.272 42.857 0.00 0.00 0.00 3.09
3098 15637 4.388499 GAGTTGGAAGCCGGCCGA 62.388 66.667 30.73 4.61 0.00 5.54
3179 15879 7.013559 CCGACGGTCTCTCTCTCTCTATATATA 59.986 44.444 5.48 0.00 0.00 0.86
3183 15883 3.256383 CCGACGGTCTCTCTCTCTCTATA 59.744 52.174 5.48 0.00 0.00 1.31
3187 15887 0.176219 TCCGACGGTCTCTCTCTCTC 59.824 60.000 14.79 0.00 0.00 3.20
3189 15889 0.108041 AGTCCGACGGTCTCTCTCTC 60.108 60.000 14.79 0.00 0.00 3.20
3191 15891 0.728542 GAAGTCCGACGGTCTCTCTC 59.271 60.000 14.79 4.72 0.00 3.20
3193 15893 1.130938 GAAGAAGTCCGACGGTCTCTC 59.869 57.143 14.79 13.01 0.00 3.20
3195 15895 1.130938 GAGAAGAAGTCCGACGGTCTC 59.869 57.143 14.79 13.42 0.00 3.36
3200 15920 1.464355 CGAGTGAGAAGAAGTCCGACG 60.464 57.143 0.00 0.00 0.00 5.12
3329 16242 0.750546 TACCTGCGGCTACGATGACT 60.751 55.000 0.00 0.00 44.60 3.41
3344 16261 4.098807 TCATACATGTGCACGTACATACCT 59.901 41.667 12.10 0.00 39.17 3.08
3508 16457 3.689161 GTGGACATACTAGCACATGCAAA 59.311 43.478 6.64 0.00 45.16 3.68
3596 16548 2.171003 GAGGGTAAAGCCAAAGCACAT 58.829 47.619 0.36 0.00 43.56 3.21
3614 16566 2.738846 GGCATGTATGATAGCAACCGAG 59.261 50.000 0.00 0.00 0.00 4.63
3615 16567 2.368548 AGGCATGTATGATAGCAACCGA 59.631 45.455 0.00 0.00 0.00 4.69
3725 16680 1.153628 ACAGTTGTATCGGAGCGCC 60.154 57.895 2.29 0.00 0.00 6.53
3888 16861 1.375523 GTCCAACGCCCGAACAGAT 60.376 57.895 0.00 0.00 0.00 2.90
3927 16900 7.617041 AGTGTTAGGATTAGATTTGAACTGC 57.383 36.000 0.00 0.00 0.00 4.40
3955 16928 1.547675 GGGACTGATGCCCTGTTTTCA 60.548 52.381 0.00 0.00 42.56 2.69
3988 16978 1.344065 TGCAGAACCGGGACTAAAGA 58.656 50.000 6.32 0.00 0.00 2.52
4171 17165 1.751927 CCAACATCTGGGAGCTGCC 60.752 63.158 18.95 18.95 42.17 4.85
4215 17225 3.962063 TGAAACCCCTAAACCCTTCAAAC 59.038 43.478 0.00 0.00 0.00 2.93
4220 17230 5.719563 CACAATATGAAACCCCTAAACCCTT 59.280 40.000 0.00 0.00 0.00 3.95
4296 17315 7.923878 TCTCTATATGTAGTAGCTAGCATCGAG 59.076 40.741 18.83 9.59 0.00 4.04
4406 17432 1.625818 ACCAAGCACGGAGAAAGAGAT 59.374 47.619 0.00 0.00 0.00 2.75
4434 17460 9.078990 AGTGTCGGATAGATATATGAAAACTCA 57.921 33.333 0.00 0.00 0.00 3.41
4523 17553 5.003160 CGGAGAATACCATATGGAATTGCA 58.997 41.667 28.77 0.79 38.94 4.08
4566 17596 4.451900 GAATTGGCGGGATCTCTTTCTTA 58.548 43.478 0.00 0.00 0.00 2.10
4575 17605 1.134098 TCAAGAGGAATTGGCGGGATC 60.134 52.381 0.00 0.00 0.00 3.36
4620 17650 0.178767 CAGATGCGGGATGAACTCCA 59.821 55.000 0.00 0.00 46.98 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.