Multiple sequence alignment - TraesCS7D01G468700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G468700 chr7D 100.000 3488 0 0 1 3488 582135986 582139473 0.000000e+00 6442
1 TraesCS7D01G468700 chr7D 91.608 286 20 2 1 284 627138086 627137803 3.260000e-105 392
2 TraesCS7D01G468700 chr7D 90.169 295 29 0 473 767 223393350 223393056 5.460000e-103 385
3 TraesCS7D01G468700 chr7B 92.842 2752 139 32 768 3488 649950129 649952853 0.000000e+00 3938
4 TraesCS7D01G468700 chr7B 90.169 295 29 0 473 767 401821498 401821792 5.460000e-103 385
5 TraesCS7D01G468700 chr7B 90.476 147 12 2 3286 3431 649952399 649952544 3.550000e-45 193
6 TraesCS7D01G468700 chr7A 94.441 1691 54 14 1833 3488 674082264 674083949 0.000000e+00 2566
7 TraesCS7D01G468700 chr7A 94.124 1004 40 12 822 1809 674081269 674082269 0.000000e+00 1509
8 TraesCS7D01G468700 chr7A 85.294 272 19 8 3035 3285 674083746 674084017 9.600000e-66 261
9 TraesCS7D01G468700 chr7A 88.421 95 11 0 2869 2963 281734927 281735021 7.910000e-22 115
10 TraesCS7D01G468700 chr6D 91.186 295 25 1 473 767 408547643 408547936 1.950000e-107 399
11 TraesCS7D01G468700 chr6D 88.772 285 28 4 1 284 339967410 339967691 2.580000e-91 346
12 TraesCS7D01G468700 chr5B 90.847 295 27 0 473 767 322752882 322752588 2.520000e-106 396
13 TraesCS7D01G468700 chr5B 89.474 95 10 0 2869 2963 670368370 670368464 1.700000e-23 121
14 TraesCS7D01G468700 chr3D 90.816 294 26 1 473 766 386221376 386221084 3.260000e-105 392
15 TraesCS7D01G468700 chr3D 86.986 292 32 3 1 288 13683568 13683857 1.210000e-84 324
16 TraesCS7D01G468700 chr3D 87.097 93 12 0 2869 2961 8382807 8382715 4.760000e-19 106
17 TraesCS7D01G468700 chr5D 90.508 295 26 2 473 767 447952706 447952414 4.220000e-104 388
18 TraesCS7D01G468700 chr5D 90.203 296 27 2 473 768 268836369 268836076 5.460000e-103 385
19 TraesCS7D01G468700 chr5D 90.526 95 9 0 2869 2963 390544367 390544461 3.650000e-25 126
20 TraesCS7D01G468700 chr2D 90.203 296 27 2 473 768 507195978 507196271 5.460000e-103 385
21 TraesCS7D01G468700 chr1A 89.933 298 28 2 473 770 310896331 310896626 1.960000e-102 383
22 TraesCS7D01G468700 chr2A 90.625 288 21 4 1 285 745996883 745997167 9.140000e-101 377
23 TraesCS7D01G468700 chr1D 89.789 284 27 2 1 284 13454553 13454834 2.560000e-96 363
24 TraesCS7D01G468700 chr4A 89.085 284 30 1 1 284 697957662 697957944 5.540000e-93 351
25 TraesCS7D01G468700 chr4B 88.070 285 30 2 1 284 642965533 642965252 5.580000e-88 335
26 TraesCS7D01G468700 chrUn 86.972 284 34 2 1 284 38420862 38420582 2.020000e-82 316
27 TraesCS7D01G468700 chr2B 86.505 289 34 3 1 285 786142114 786141827 2.610000e-81 313
28 TraesCS7D01G468700 chr1B 91.089 101 8 1 2863 2963 486853149 486853248 6.070000e-28 135
29 TraesCS7D01G468700 chr1B 86.458 96 12 1 2869 2963 675323617 675323522 1.710000e-18 104
30 TraesCS7D01G468700 chr6B 90.526 95 9 0 2869 2963 530570812 530570718 3.650000e-25 126
31 TraesCS7D01G468700 chr5A 86.316 95 13 0 2869 2963 384195026 384194932 1.710000e-18 104
32 TraesCS7D01G468700 chr6A 85.149 101 13 2 2863 2963 592519509 592519411 6.160000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G468700 chr7D 582135986 582139473 3487 False 6442.000000 6442 100.000000 1 3488 1 chr7D.!!$F1 3487
1 TraesCS7D01G468700 chr7B 649950129 649952853 2724 False 2065.500000 3938 91.659000 768 3488 2 chr7B.!!$F2 2720
2 TraesCS7D01G468700 chr7A 674081269 674084017 2748 False 1445.333333 2566 91.286333 822 3488 3 chr7A.!!$F2 2666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.033504 ACGATTCGTGCAGAACTGGT 59.966 50.0 11.56 0.0 42.39 4.00 F
259 260 0.034477 AAGGGCCTTATGAACCGGTG 60.034 55.0 19.37 0.0 0.00 4.94 F
274 275 0.034896 CGGTGTTGTAGCCTGGTTCT 59.965 55.0 0.00 0.0 0.00 3.01 F
311 312 0.035820 TCATGTACAAACCCCTCGCC 60.036 55.0 0.00 0.0 0.00 5.54 F
1233 1270 0.040351 TCCTCCACTCTCACCTCCTG 59.960 60.0 0.00 0.0 0.00 3.86 F
1749 1786 0.102120 CTCTCTGTCCCTCGCACATC 59.898 60.0 0.00 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 1786 1.775385 ACCCCTTTCCATTTATGCGG 58.225 50.000 0.00 0.0 0.00 5.69 R
1834 1872 1.974265 TCAGAAATTTGCACGTCCCA 58.026 45.000 0.00 0.0 0.00 4.37 R
1835 1873 3.575965 AATCAGAAATTTGCACGTCCC 57.424 42.857 0.00 0.0 0.00 4.46 R
1836 1874 5.036737 CCATAATCAGAAATTTGCACGTCC 58.963 41.667 0.00 0.0 0.00 4.79 R
2391 2438 3.136123 TACGCGAGGACCCGGAAG 61.136 66.667 15.93 0.0 0.00 3.46 R
2954 3032 4.421131 TGGTGGTATAAGGTTGCCAAATT 58.579 39.130 0.00 0.0 32.26 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.296813 GTTGGGTTTCTAGTTGTATGCAG 57.703 43.478 0.00 0.00 0.00 4.41
23 24 3.950397 TGGGTTTCTAGTTGTATGCAGG 58.050 45.455 0.00 0.00 0.00 4.85
24 25 2.683362 GGGTTTCTAGTTGTATGCAGGC 59.317 50.000 0.00 0.00 0.00 4.85
25 26 2.683362 GGTTTCTAGTTGTATGCAGGCC 59.317 50.000 0.00 0.00 0.00 5.19
26 27 2.309528 TTCTAGTTGTATGCAGGCCG 57.690 50.000 0.00 0.00 0.00 6.13
27 28 1.191535 TCTAGTTGTATGCAGGCCGT 58.808 50.000 0.00 0.00 0.00 5.68
28 29 1.134818 TCTAGTTGTATGCAGGCCGTG 60.135 52.381 0.00 0.00 0.00 4.94
43 44 4.778143 GTGCCGGCCCAGTAGGTG 62.778 72.222 26.77 0.00 38.26 4.00
45 46 4.162690 GCCGGCCCAGTAGGTGAG 62.163 72.222 18.11 0.00 38.26 3.51
46 47 4.162690 CCGGCCCAGTAGGTGAGC 62.163 72.222 0.00 0.00 38.26 4.26
47 48 3.077556 CGGCCCAGTAGGTGAGCT 61.078 66.667 0.00 0.00 38.26 4.09
48 49 2.586792 GGCCCAGTAGGTGAGCTG 59.413 66.667 0.00 0.00 38.26 4.24
49 50 2.294078 GGCCCAGTAGGTGAGCTGT 61.294 63.158 0.00 0.00 38.26 4.40
50 51 1.679898 GCCCAGTAGGTGAGCTGTT 59.320 57.895 0.00 0.00 38.26 3.16
51 52 0.036875 GCCCAGTAGGTGAGCTGTTT 59.963 55.000 0.00 0.00 38.26 2.83
52 53 1.545651 GCCCAGTAGGTGAGCTGTTTT 60.546 52.381 0.00 0.00 38.26 2.43
53 54 2.863809 CCCAGTAGGTGAGCTGTTTTT 58.136 47.619 0.00 0.00 0.00 1.94
91 92 5.970317 AAAAATCCTTTAGTACCGGTTGG 57.030 39.130 15.04 6.26 42.84 3.77
107 108 4.384599 GGTGTTACCAACCGGTCC 57.615 61.111 8.04 0.00 44.71 4.46
108 109 1.756665 GGTGTTACCAACCGGTCCT 59.243 57.895 8.04 0.00 44.71 3.85
109 110 0.975887 GGTGTTACCAACCGGTCCTA 59.024 55.000 8.04 0.00 44.71 2.94
110 111 1.347378 GGTGTTACCAACCGGTCCTAA 59.653 52.381 8.04 0.53 44.71 2.69
111 112 2.224499 GGTGTTACCAACCGGTCCTAAA 60.224 50.000 8.04 0.00 44.71 1.85
112 113 3.069289 GTGTTACCAACCGGTCCTAAAG 58.931 50.000 8.04 0.00 44.71 1.85
113 114 2.038820 TGTTACCAACCGGTCCTAAAGG 59.961 50.000 8.04 6.07 44.71 3.11
114 115 1.278537 TACCAACCGGTCCTAAAGGG 58.721 55.000 8.04 3.75 44.71 3.95
115 116 1.378119 CCAACCGGTCCTAAAGGGC 60.378 63.158 8.04 0.00 39.63 5.19
116 117 1.683441 CAACCGGTCCTAAAGGGCT 59.317 57.895 8.04 0.00 40.38 5.19
117 118 0.392595 CAACCGGTCCTAAAGGGCTC 60.393 60.000 8.04 0.00 40.38 4.70
118 119 1.559965 AACCGGTCCTAAAGGGCTCC 61.560 60.000 8.04 0.00 40.38 4.70
119 120 2.743179 CCGGTCCTAAAGGGCTCCC 61.743 68.421 0.00 0.00 40.38 4.30
120 121 2.743179 CGGTCCTAAAGGGCTCCCC 61.743 68.421 0.32 0.00 45.90 4.81
159 160 3.981308 CACGTGGTGGCCCTTTAG 58.019 61.111 7.95 0.00 0.00 1.85
160 161 2.033602 ACGTGGTGGCCCTTTAGC 59.966 61.111 0.00 0.00 0.00 3.09
161 162 3.124921 CGTGGTGGCCCTTTAGCG 61.125 66.667 0.00 0.00 0.00 4.26
162 163 2.349755 GTGGTGGCCCTTTAGCGA 59.650 61.111 0.00 0.00 0.00 4.93
163 164 2.038837 GTGGTGGCCCTTTAGCGAC 61.039 63.158 0.00 0.00 40.39 5.19
164 165 2.818274 GGTGGCCCTTTAGCGACG 60.818 66.667 0.00 0.00 41.86 5.12
165 166 2.263540 GTGGCCCTTTAGCGACGA 59.736 61.111 0.00 0.00 31.69 4.20
166 167 1.153429 GTGGCCCTTTAGCGACGAT 60.153 57.895 0.00 0.00 31.69 3.73
167 168 0.743345 GTGGCCCTTTAGCGACGATT 60.743 55.000 0.00 0.00 31.69 3.34
168 169 0.461339 TGGCCCTTTAGCGACGATTC 60.461 55.000 0.00 0.00 0.00 2.52
178 179 2.725644 CGACGATTCGTGCAGAACT 58.274 52.632 17.75 0.00 41.37 3.01
179 180 0.363512 CGACGATTCGTGCAGAACTG 59.636 55.000 17.75 0.00 41.37 3.16
180 181 0.716108 GACGATTCGTGCAGAACTGG 59.284 55.000 17.75 0.00 41.37 4.00
181 182 0.033504 ACGATTCGTGCAGAACTGGT 59.966 50.000 11.56 0.00 42.39 4.00
182 183 1.271379 ACGATTCGTGCAGAACTGGTA 59.729 47.619 11.56 0.00 42.39 3.25
183 184 1.654105 CGATTCGTGCAGAACTGGTAC 59.346 52.381 0.00 0.00 42.39 3.34
184 185 2.671351 CGATTCGTGCAGAACTGGTACT 60.671 50.000 0.00 0.00 42.39 2.73
185 186 3.427098 CGATTCGTGCAGAACTGGTACTA 60.427 47.826 0.00 0.00 42.39 1.82
186 187 4.491676 GATTCGTGCAGAACTGGTACTAA 58.508 43.478 3.99 0.00 42.39 2.24
187 188 4.325028 TTCGTGCAGAACTGGTACTAAA 57.675 40.909 3.99 0.00 33.14 1.85
188 189 3.909430 TCGTGCAGAACTGGTACTAAAG 58.091 45.455 3.99 0.00 0.00 1.85
189 190 2.993899 CGTGCAGAACTGGTACTAAAGG 59.006 50.000 3.99 0.00 0.00 3.11
190 191 3.335579 GTGCAGAACTGGTACTAAAGGG 58.664 50.000 3.99 0.00 0.00 3.95
191 192 2.304761 TGCAGAACTGGTACTAAAGGGG 59.695 50.000 3.99 0.00 0.00 4.79
192 193 2.355818 GCAGAACTGGTACTAAAGGGGG 60.356 54.545 3.99 0.00 0.00 5.40
212 213 3.100039 GACCTTTAGTCCCCACCCT 57.900 57.895 0.00 0.00 39.84 4.34
213 214 1.369403 GACCTTTAGTCCCCACCCTT 58.631 55.000 0.00 0.00 39.84 3.95
214 215 1.709115 GACCTTTAGTCCCCACCCTTT 59.291 52.381 0.00 0.00 39.84 3.11
215 216 2.914941 GACCTTTAGTCCCCACCCTTTA 59.085 50.000 0.00 0.00 39.84 1.85
216 217 2.917600 ACCTTTAGTCCCCACCCTTTAG 59.082 50.000 0.00 0.00 0.00 1.85
217 218 2.917600 CCTTTAGTCCCCACCCTTTAGT 59.082 50.000 0.00 0.00 0.00 2.24
218 219 3.308188 CCTTTAGTCCCCACCCTTTAGTG 60.308 52.174 0.00 0.00 37.51 2.74
219 220 1.282382 TAGTCCCCACCCTTTAGTGC 58.718 55.000 0.00 0.00 36.38 4.40
220 221 1.001269 GTCCCCACCCTTTAGTGCC 60.001 63.158 0.00 0.00 36.38 5.01
221 222 2.045340 CCCCACCCTTTAGTGCCG 60.045 66.667 0.00 0.00 36.38 5.69
222 223 2.045340 CCCACCCTTTAGTGCCGG 60.045 66.667 0.00 0.00 36.38 6.13
223 224 2.754375 CCACCCTTTAGTGCCGGT 59.246 61.111 1.90 0.00 36.38 5.28
224 225 1.074248 CCACCCTTTAGTGCCGGTT 59.926 57.895 1.90 0.00 36.38 4.44
225 226 0.325602 CCACCCTTTAGTGCCGGTTA 59.674 55.000 1.90 0.00 36.38 2.85
226 227 1.445871 CACCCTTTAGTGCCGGTTAC 58.554 55.000 1.90 2.66 0.00 2.50
227 228 1.058284 ACCCTTTAGTGCCGGTTACA 58.942 50.000 1.90 0.00 0.00 2.41
228 229 1.002773 ACCCTTTAGTGCCGGTTACAG 59.997 52.381 1.90 0.00 0.00 2.74
229 230 1.276989 CCCTTTAGTGCCGGTTACAGA 59.723 52.381 1.90 0.00 0.00 3.41
230 231 2.289819 CCCTTTAGTGCCGGTTACAGAA 60.290 50.000 1.90 0.00 0.00 3.02
231 232 2.740447 CCTTTAGTGCCGGTTACAGAAC 59.260 50.000 1.90 0.00 34.56 3.01
240 241 2.460757 GGTTACAGAACCGGCACTAA 57.539 50.000 0.00 0.00 45.73 2.24
241 242 2.769893 GGTTACAGAACCGGCACTAAA 58.230 47.619 0.00 0.00 45.73 1.85
242 243 2.740447 GGTTACAGAACCGGCACTAAAG 59.260 50.000 0.00 0.00 45.73 1.85
243 244 2.740447 GTTACAGAACCGGCACTAAAGG 59.260 50.000 0.00 0.00 0.00 3.11
244 245 0.036306 ACAGAACCGGCACTAAAGGG 59.964 55.000 0.00 0.00 0.00 3.95
245 246 1.002502 AGAACCGGCACTAAAGGGC 60.003 57.895 0.00 0.00 0.00 5.19
246 247 2.035155 AACCGGCACTAAAGGGCC 59.965 61.111 13.51 13.51 46.80 5.80
252 253 2.729028 GGCACTAAAGGGCCTTATGA 57.271 50.000 21.25 7.25 46.74 2.15
253 254 3.012934 GGCACTAAAGGGCCTTATGAA 57.987 47.619 21.25 4.81 46.74 2.57
254 255 2.688446 GGCACTAAAGGGCCTTATGAAC 59.312 50.000 21.25 9.49 46.74 3.18
255 256 2.688446 GCACTAAAGGGCCTTATGAACC 59.312 50.000 21.25 3.14 0.00 3.62
256 257 2.943033 CACTAAAGGGCCTTATGAACCG 59.057 50.000 21.25 5.60 0.00 4.44
257 258 2.092592 ACTAAAGGGCCTTATGAACCGG 60.093 50.000 21.25 0.00 0.00 5.28
258 259 0.702316 AAAGGGCCTTATGAACCGGT 59.298 50.000 21.25 0.00 0.00 5.28
259 260 0.034477 AAGGGCCTTATGAACCGGTG 60.034 55.000 19.37 0.00 0.00 4.94
260 261 1.205460 AGGGCCTTATGAACCGGTGT 61.205 55.000 8.52 0.00 0.00 4.16
261 262 0.323087 GGGCCTTATGAACCGGTGTT 60.323 55.000 8.52 0.00 37.42 3.32
262 263 0.808755 GGCCTTATGAACCGGTGTTG 59.191 55.000 8.52 0.00 33.97 3.33
263 264 1.530323 GCCTTATGAACCGGTGTTGT 58.470 50.000 8.52 0.00 33.97 3.32
264 265 2.616001 GGCCTTATGAACCGGTGTTGTA 60.616 50.000 8.52 0.00 33.97 2.41
265 266 2.676342 GCCTTATGAACCGGTGTTGTAG 59.324 50.000 8.52 3.38 33.97 2.74
266 267 2.676342 CCTTATGAACCGGTGTTGTAGC 59.324 50.000 8.52 0.00 33.97 3.58
267 268 2.389962 TATGAACCGGTGTTGTAGCC 57.610 50.000 8.52 0.00 33.97 3.93
268 269 0.690762 ATGAACCGGTGTTGTAGCCT 59.309 50.000 8.52 0.00 33.97 4.58
269 270 0.250124 TGAACCGGTGTTGTAGCCTG 60.250 55.000 8.52 0.00 33.97 4.85
270 271 0.953960 GAACCGGTGTTGTAGCCTGG 60.954 60.000 8.52 0.00 33.97 4.45
271 272 1.702022 AACCGGTGTTGTAGCCTGGT 61.702 55.000 8.52 0.00 34.73 4.00
272 273 1.072505 CCGGTGTTGTAGCCTGGTT 59.927 57.895 0.00 0.00 0.00 3.67
273 274 0.953960 CCGGTGTTGTAGCCTGGTTC 60.954 60.000 0.00 0.00 0.00 3.62
274 275 0.034896 CGGTGTTGTAGCCTGGTTCT 59.965 55.000 0.00 0.00 0.00 3.01
275 276 1.523758 GGTGTTGTAGCCTGGTTCTG 58.476 55.000 0.00 0.00 0.00 3.02
276 277 0.875059 GTGTTGTAGCCTGGTTCTGC 59.125 55.000 0.00 0.00 0.00 4.26
277 278 0.472044 TGTTGTAGCCTGGTTCTGCA 59.528 50.000 0.00 0.00 0.00 4.41
278 279 0.875059 GTTGTAGCCTGGTTCTGCAC 59.125 55.000 0.00 0.00 0.00 4.57
279 280 0.764890 TTGTAGCCTGGTTCTGCACT 59.235 50.000 0.00 0.00 0.00 4.40
280 281 1.639722 TGTAGCCTGGTTCTGCACTA 58.360 50.000 0.00 0.00 0.00 2.74
281 282 1.550524 TGTAGCCTGGTTCTGCACTAG 59.449 52.381 0.00 0.00 33.68 2.57
282 283 1.550976 GTAGCCTGGTTCTGCACTAGT 59.449 52.381 0.00 0.00 31.92 2.57
283 284 0.322975 AGCCTGGTTCTGCACTAGTG 59.677 55.000 18.93 18.93 31.92 2.74
300 301 6.974965 CACTAGTGCAGATAGATCATGTACA 58.025 40.000 10.54 0.00 32.72 2.90
301 302 7.428826 CACTAGTGCAGATAGATCATGTACAA 58.571 38.462 10.54 0.00 32.72 2.41
302 303 7.922811 CACTAGTGCAGATAGATCATGTACAAA 59.077 37.037 10.54 0.00 32.72 2.83
303 304 7.923344 ACTAGTGCAGATAGATCATGTACAAAC 59.077 37.037 11.85 0.00 32.72 2.93
304 305 6.051717 AGTGCAGATAGATCATGTACAAACC 58.948 40.000 0.00 0.00 32.72 3.27
305 306 5.237344 GTGCAGATAGATCATGTACAAACCC 59.763 44.000 0.00 0.00 30.94 4.11
306 307 4.757149 GCAGATAGATCATGTACAAACCCC 59.243 45.833 0.00 0.00 0.00 4.95
307 308 5.455326 GCAGATAGATCATGTACAAACCCCT 60.455 44.000 0.00 0.00 0.00 4.79
308 309 6.226787 CAGATAGATCATGTACAAACCCCTC 58.773 44.000 0.00 0.00 0.00 4.30
309 310 3.543680 AGATCATGTACAAACCCCTCG 57.456 47.619 0.00 0.00 0.00 4.63
310 311 1.940613 GATCATGTACAAACCCCTCGC 59.059 52.381 0.00 0.00 0.00 5.03
311 312 0.035820 TCATGTACAAACCCCTCGCC 60.036 55.000 0.00 0.00 0.00 5.54
312 313 1.078708 ATGTACAAACCCCTCGCCG 60.079 57.895 0.00 0.00 0.00 6.46
313 314 3.122971 GTACAAACCCCTCGCCGC 61.123 66.667 0.00 0.00 0.00 6.53
314 315 4.745751 TACAAACCCCTCGCCGCG 62.746 66.667 6.39 6.39 0.00 6.46
334 335 4.732106 GGTCGCAACCCTATCTCG 57.268 61.111 0.00 0.00 39.93 4.04
335 336 1.814527 GGTCGCAACCCTATCTCGT 59.185 57.895 0.00 0.00 39.93 4.18
336 337 0.527817 GGTCGCAACCCTATCTCGTG 60.528 60.000 0.00 0.00 39.93 4.35
337 338 1.141019 TCGCAACCCTATCTCGTGC 59.859 57.895 0.00 0.00 0.00 5.34
338 339 1.141881 CGCAACCCTATCTCGTGCT 59.858 57.895 0.00 0.00 0.00 4.40
339 340 0.872021 CGCAACCCTATCTCGTGCTC 60.872 60.000 0.00 0.00 0.00 4.26
340 341 0.872021 GCAACCCTATCTCGTGCTCG 60.872 60.000 0.81 0.81 38.55 5.03
341 342 0.249073 CAACCCTATCTCGTGCTCGG 60.249 60.000 8.49 0.00 37.69 4.63
342 343 2.017559 AACCCTATCTCGTGCTCGGC 62.018 60.000 8.49 0.00 37.69 5.54
343 344 2.336809 CCTATCTCGTGCTCGGCC 59.663 66.667 8.49 0.00 37.69 6.13
344 345 2.490148 CCTATCTCGTGCTCGGCCA 61.490 63.158 2.24 0.00 37.69 5.36
345 346 1.299468 CTATCTCGTGCTCGGCCAC 60.299 63.158 2.24 0.00 37.69 5.01
346 347 2.685387 CTATCTCGTGCTCGGCCACC 62.685 65.000 2.24 0.00 37.69 4.61
374 375 4.749310 CGAAGCACCGCTGCCTCT 62.749 66.667 0.00 0.00 45.53 3.69
375 376 2.817396 GAAGCACCGCTGCCTCTC 60.817 66.667 0.00 0.00 45.53 3.20
376 377 3.308014 GAAGCACCGCTGCCTCTCT 62.308 63.158 0.00 0.00 45.53 3.10
377 378 3.308014 AAGCACCGCTGCCTCTCTC 62.308 63.158 0.00 0.00 45.53 3.20
378 379 4.828925 GCACCGCTGCCTCTCTCC 62.829 72.222 0.00 0.00 37.45 3.71
379 380 3.385384 CACCGCTGCCTCTCTCCA 61.385 66.667 0.00 0.00 0.00 3.86
380 381 2.364842 ACCGCTGCCTCTCTCCAT 60.365 61.111 0.00 0.00 0.00 3.41
381 382 2.420890 CCGCTGCCTCTCTCCATC 59.579 66.667 0.00 0.00 0.00 3.51
382 383 2.429767 CCGCTGCCTCTCTCCATCA 61.430 63.158 0.00 0.00 0.00 3.07
383 384 1.067749 CGCTGCCTCTCTCCATCAG 59.932 63.158 0.00 0.00 0.00 2.90
384 385 1.446791 GCTGCCTCTCTCCATCAGG 59.553 63.158 0.00 0.00 0.00 3.86
385 386 1.047596 GCTGCCTCTCTCCATCAGGA 61.048 60.000 0.00 0.00 43.21 3.86
386 387 1.493861 CTGCCTCTCTCCATCAGGAA 58.506 55.000 0.00 0.00 45.19 3.36
387 388 2.048601 CTGCCTCTCTCCATCAGGAAT 58.951 52.381 0.00 0.00 45.19 3.01
388 389 3.237746 CTGCCTCTCTCCATCAGGAATA 58.762 50.000 0.00 0.00 45.19 1.75
389 390 3.237746 TGCCTCTCTCCATCAGGAATAG 58.762 50.000 0.00 0.00 45.19 1.73
390 391 2.028203 GCCTCTCTCCATCAGGAATAGC 60.028 54.545 0.00 0.00 45.19 2.97
391 392 3.237746 CCTCTCTCCATCAGGAATAGCA 58.762 50.000 0.00 0.00 45.19 3.49
392 393 3.258872 CCTCTCTCCATCAGGAATAGCAG 59.741 52.174 0.00 0.00 45.19 4.24
393 394 4.151121 CTCTCTCCATCAGGAATAGCAGA 58.849 47.826 0.00 0.00 45.19 4.26
394 395 3.894427 TCTCTCCATCAGGAATAGCAGAC 59.106 47.826 0.00 0.00 45.19 3.51
395 396 2.625314 TCTCCATCAGGAATAGCAGACG 59.375 50.000 0.00 0.00 45.19 4.18
396 397 1.069204 TCCATCAGGAATAGCAGACGC 59.931 52.381 0.00 0.00 42.23 5.19
397 398 1.202568 CCATCAGGAATAGCAGACGCA 60.203 52.381 0.00 0.00 37.67 5.24
398 399 2.133553 CATCAGGAATAGCAGACGCAG 58.866 52.381 0.00 0.00 42.27 5.18
399 400 1.474330 TCAGGAATAGCAGACGCAGA 58.526 50.000 0.00 0.00 42.27 4.26
400 401 1.824852 TCAGGAATAGCAGACGCAGAA 59.175 47.619 0.00 0.00 42.27 3.02
401 402 2.233676 TCAGGAATAGCAGACGCAGAAA 59.766 45.455 0.00 0.00 42.27 2.52
402 403 2.606725 CAGGAATAGCAGACGCAGAAAG 59.393 50.000 0.00 0.00 42.27 2.62
403 404 1.936547 GGAATAGCAGACGCAGAAAGG 59.063 52.381 0.00 0.00 42.27 3.11
404 405 2.418746 GGAATAGCAGACGCAGAAAGGA 60.419 50.000 0.00 0.00 42.27 3.36
405 406 3.262420 GAATAGCAGACGCAGAAAGGAA 58.738 45.455 0.00 0.00 42.27 3.36
406 407 2.831685 TAGCAGACGCAGAAAGGAAA 57.168 45.000 0.00 0.00 42.27 3.13
407 408 1.967319 AGCAGACGCAGAAAGGAAAA 58.033 45.000 0.00 0.00 42.27 2.29
408 409 1.604278 AGCAGACGCAGAAAGGAAAAC 59.396 47.619 0.00 0.00 42.27 2.43
409 410 1.335051 GCAGACGCAGAAAGGAAAACC 60.335 52.381 0.00 0.00 38.36 3.27
410 411 1.266989 CAGACGCAGAAAGGAAAACCC 59.733 52.381 0.00 0.00 0.00 4.11
436 437 5.806089 GGCAACTTAGAATTGACAAAACG 57.194 39.130 0.00 0.00 34.99 3.60
437 438 4.148174 GGCAACTTAGAATTGACAAAACGC 59.852 41.667 0.00 0.00 34.99 4.84
438 439 4.737765 GCAACTTAGAATTGACAAAACGCA 59.262 37.500 0.00 0.00 0.00 5.24
439 440 5.331532 GCAACTTAGAATTGACAAAACGCAC 60.332 40.000 0.00 0.00 0.00 5.34
440 441 5.493133 ACTTAGAATTGACAAAACGCACA 57.507 34.783 0.00 0.00 0.00 4.57
441 442 5.885881 ACTTAGAATTGACAAAACGCACAA 58.114 33.333 0.00 0.00 0.00 3.33
442 443 6.326375 ACTTAGAATTGACAAAACGCACAAA 58.674 32.000 0.00 0.00 0.00 2.83
443 444 6.252655 ACTTAGAATTGACAAAACGCACAAAC 59.747 34.615 0.00 0.00 0.00 2.93
444 445 3.862845 AGAATTGACAAAACGCACAAACC 59.137 39.130 0.00 0.00 0.00 3.27
445 446 3.518634 ATTGACAAAACGCACAAACCT 57.481 38.095 0.00 0.00 0.00 3.50
446 447 4.640789 ATTGACAAAACGCACAAACCTA 57.359 36.364 0.00 0.00 0.00 3.08
447 448 3.684103 TGACAAAACGCACAAACCTAG 57.316 42.857 0.00 0.00 0.00 3.02
448 449 2.223386 TGACAAAACGCACAAACCTAGC 60.223 45.455 0.00 0.00 0.00 3.42
449 450 1.746220 ACAAAACGCACAAACCTAGCA 59.254 42.857 0.00 0.00 0.00 3.49
450 451 2.116366 CAAAACGCACAAACCTAGCAC 58.884 47.619 0.00 0.00 0.00 4.40
451 452 1.675552 AAACGCACAAACCTAGCACT 58.324 45.000 0.00 0.00 0.00 4.40
452 453 1.226746 AACGCACAAACCTAGCACTC 58.773 50.000 0.00 0.00 0.00 3.51
453 454 0.602905 ACGCACAAACCTAGCACTCC 60.603 55.000 0.00 0.00 0.00 3.85
454 455 0.320771 CGCACAAACCTAGCACTCCT 60.321 55.000 0.00 0.00 0.00 3.69
455 456 1.067142 CGCACAAACCTAGCACTCCTA 60.067 52.381 0.00 0.00 0.00 2.94
456 457 2.611971 CGCACAAACCTAGCACTCCTAA 60.612 50.000 0.00 0.00 0.00 2.69
457 458 3.408634 GCACAAACCTAGCACTCCTAAA 58.591 45.455 0.00 0.00 0.00 1.85
458 459 4.010349 GCACAAACCTAGCACTCCTAAAT 58.990 43.478 0.00 0.00 0.00 1.40
459 460 4.142600 GCACAAACCTAGCACTCCTAAATG 60.143 45.833 0.00 0.00 0.00 2.32
460 461 5.245531 CACAAACCTAGCACTCCTAAATGA 58.754 41.667 0.00 0.00 0.00 2.57
461 462 5.122396 CACAAACCTAGCACTCCTAAATGAC 59.878 44.000 0.00 0.00 0.00 3.06
462 463 5.221843 ACAAACCTAGCACTCCTAAATGACA 60.222 40.000 0.00 0.00 0.00 3.58
463 464 5.499004 AACCTAGCACTCCTAAATGACAA 57.501 39.130 0.00 0.00 0.00 3.18
464 465 4.833390 ACCTAGCACTCCTAAATGACAAC 58.167 43.478 0.00 0.00 0.00 3.32
465 466 4.286032 ACCTAGCACTCCTAAATGACAACA 59.714 41.667 0.00 0.00 0.00 3.33
466 467 5.045578 ACCTAGCACTCCTAAATGACAACAT 60.046 40.000 0.00 0.00 38.50 2.71
467 468 5.882557 CCTAGCACTCCTAAATGACAACATT 59.117 40.000 0.00 0.00 46.99 2.71
479 480 5.670792 ATGACAACATTTAGGTCGTAGGA 57.329 39.130 0.00 0.00 34.32 2.94
480 481 5.670792 TGACAACATTTAGGTCGTAGGAT 57.329 39.130 0.00 0.00 34.32 3.24
481 482 6.045072 TGACAACATTTAGGTCGTAGGATT 57.955 37.500 0.00 0.00 34.32 3.01
482 483 6.469410 TGACAACATTTAGGTCGTAGGATTT 58.531 36.000 0.00 0.00 34.32 2.17
483 484 6.592607 TGACAACATTTAGGTCGTAGGATTTC 59.407 38.462 0.00 0.00 34.32 2.17
484 485 5.878669 ACAACATTTAGGTCGTAGGATTTCC 59.121 40.000 0.00 0.00 0.00 3.13
485 486 5.687166 ACATTTAGGTCGTAGGATTTCCA 57.313 39.130 0.00 0.00 38.89 3.53
486 487 6.057321 ACATTTAGGTCGTAGGATTTCCAA 57.943 37.500 0.00 0.00 38.89 3.53
487 488 6.478129 ACATTTAGGTCGTAGGATTTCCAAA 58.522 36.000 0.00 0.00 38.89 3.28
488 489 6.943718 ACATTTAGGTCGTAGGATTTCCAAAA 59.056 34.615 0.00 0.00 38.89 2.44
489 490 6.806388 TTTAGGTCGTAGGATTTCCAAAAC 57.194 37.500 0.00 0.00 38.89 2.43
490 491 3.332034 AGGTCGTAGGATTTCCAAAACG 58.668 45.455 10.92 10.92 39.01 3.60
491 492 2.159612 GGTCGTAGGATTTCCAAAACGC 60.160 50.000 11.86 8.50 38.18 4.84
492 493 1.727880 TCGTAGGATTTCCAAAACGCG 59.272 47.619 3.53 3.53 38.18 6.01
493 494 1.201987 CGTAGGATTTCCAAAACGCGG 60.202 52.381 12.47 0.00 38.89 6.46
494 495 2.078392 GTAGGATTTCCAAAACGCGGA 58.922 47.619 12.47 0.00 38.89 5.54
495 496 1.611519 AGGATTTCCAAAACGCGGAA 58.388 45.000 12.47 0.00 40.81 4.30
500 501 3.562567 TTTCCAAAACGCGGAAATAGG 57.437 42.857 12.47 4.53 45.43 2.57
501 502 1.455248 TCCAAAACGCGGAAATAGGG 58.545 50.000 12.47 2.32 0.00 3.53
502 503 1.003349 TCCAAAACGCGGAAATAGGGA 59.997 47.619 12.47 4.97 0.00 4.20
503 504 1.813786 CCAAAACGCGGAAATAGGGAA 59.186 47.619 12.47 0.00 0.00 3.97
504 505 2.229302 CCAAAACGCGGAAATAGGGAAA 59.771 45.455 12.47 0.00 0.00 3.13
505 506 3.305471 CCAAAACGCGGAAATAGGGAAAA 60.305 43.478 12.47 0.00 0.00 2.29
506 507 3.564235 AAACGCGGAAATAGGGAAAAC 57.436 42.857 12.47 0.00 0.00 2.43
507 508 2.188062 ACGCGGAAATAGGGAAAACA 57.812 45.000 12.47 0.00 0.00 2.83
508 509 2.718563 ACGCGGAAATAGGGAAAACAT 58.281 42.857 12.47 0.00 0.00 2.71
509 510 2.422127 ACGCGGAAATAGGGAAAACATG 59.578 45.455 12.47 0.00 0.00 3.21
510 511 2.223479 CGCGGAAATAGGGAAAACATGG 60.223 50.000 0.00 0.00 0.00 3.66
511 512 2.100749 GCGGAAATAGGGAAAACATGGG 59.899 50.000 0.00 0.00 0.00 4.00
512 513 3.626930 CGGAAATAGGGAAAACATGGGA 58.373 45.455 0.00 0.00 0.00 4.37
513 514 4.215109 CGGAAATAGGGAAAACATGGGAT 58.785 43.478 0.00 0.00 0.00 3.85
514 515 4.649218 CGGAAATAGGGAAAACATGGGATT 59.351 41.667 0.00 0.00 0.00 3.01
515 516 5.830991 CGGAAATAGGGAAAACATGGGATTA 59.169 40.000 0.00 0.00 0.00 1.75
516 517 6.016276 CGGAAATAGGGAAAACATGGGATTAG 60.016 42.308 0.00 0.00 0.00 1.73
517 518 7.066781 GGAAATAGGGAAAACATGGGATTAGA 58.933 38.462 0.00 0.00 0.00 2.10
518 519 7.231519 GGAAATAGGGAAAACATGGGATTAGAG 59.768 40.741 0.00 0.00 0.00 2.43
519 520 6.848562 ATAGGGAAAACATGGGATTAGAGT 57.151 37.500 0.00 0.00 0.00 3.24
520 521 4.860022 AGGGAAAACATGGGATTAGAGTG 58.140 43.478 0.00 0.00 0.00 3.51
521 522 3.954258 GGGAAAACATGGGATTAGAGTGG 59.046 47.826 0.00 0.00 0.00 4.00
522 523 3.381590 GGAAAACATGGGATTAGAGTGGC 59.618 47.826 0.00 0.00 0.00 5.01
523 524 3.737559 AAACATGGGATTAGAGTGGCA 57.262 42.857 0.00 0.00 0.00 4.92
524 525 3.959495 AACATGGGATTAGAGTGGCAT 57.041 42.857 0.00 0.00 0.00 4.40
525 526 3.219176 ACATGGGATTAGAGTGGCATG 57.781 47.619 0.00 0.00 0.00 4.06
526 527 2.511218 ACATGGGATTAGAGTGGCATGT 59.489 45.455 0.00 0.00 0.00 3.21
527 528 3.144506 CATGGGATTAGAGTGGCATGTC 58.855 50.000 0.00 0.00 0.00 3.06
528 529 2.195727 TGGGATTAGAGTGGCATGTCA 58.804 47.619 0.00 0.00 0.00 3.58
529 530 2.779430 TGGGATTAGAGTGGCATGTCAT 59.221 45.455 1.89 0.00 0.00 3.06
530 531 3.181451 TGGGATTAGAGTGGCATGTCATC 60.181 47.826 1.89 2.36 0.00 2.92
531 532 3.072184 GGGATTAGAGTGGCATGTCATCT 59.928 47.826 1.89 10.10 0.00 2.90
532 533 4.445448 GGGATTAGAGTGGCATGTCATCTT 60.445 45.833 1.89 0.00 0.00 2.40
533 534 4.514441 GGATTAGAGTGGCATGTCATCTTG 59.486 45.833 1.89 0.00 0.00 3.02
534 535 4.824479 TTAGAGTGGCATGTCATCTTGA 57.176 40.909 1.89 0.00 0.00 3.02
535 536 3.708403 AGAGTGGCATGTCATCTTGAA 57.292 42.857 1.89 0.00 0.00 2.69
536 537 4.232188 AGAGTGGCATGTCATCTTGAAT 57.768 40.909 1.89 0.00 0.00 2.57
537 538 4.197750 AGAGTGGCATGTCATCTTGAATC 58.802 43.478 1.89 0.00 0.00 2.52
538 539 3.285484 AGTGGCATGTCATCTTGAATCC 58.715 45.455 1.89 0.00 0.00 3.01
539 540 3.018856 GTGGCATGTCATCTTGAATCCA 58.981 45.455 1.89 0.00 0.00 3.41
540 541 3.444742 GTGGCATGTCATCTTGAATCCAA 59.555 43.478 1.89 0.00 0.00 3.53
541 542 3.444742 TGGCATGTCATCTTGAATCCAAC 59.555 43.478 0.00 0.00 0.00 3.77
542 543 3.444742 GGCATGTCATCTTGAATCCAACA 59.555 43.478 0.00 0.00 0.00 3.33
543 544 4.439700 GGCATGTCATCTTGAATCCAACAG 60.440 45.833 0.00 0.00 0.00 3.16
544 545 4.439700 GCATGTCATCTTGAATCCAACAGG 60.440 45.833 0.00 0.00 0.00 4.00
545 546 4.639078 TGTCATCTTGAATCCAACAGGA 57.361 40.909 0.00 0.00 35.50 3.86
546 547 5.183530 TGTCATCTTGAATCCAACAGGAT 57.816 39.130 0.00 0.00 44.04 3.24
557 558 4.908601 TCCAACAGGATTGTATGAGTGT 57.091 40.909 0.00 0.00 36.23 3.55
558 559 5.241403 TCCAACAGGATTGTATGAGTGTT 57.759 39.130 0.00 0.00 36.23 3.32
559 560 5.630121 TCCAACAGGATTGTATGAGTGTTT 58.370 37.500 0.00 0.00 36.23 2.83
560 561 5.473162 TCCAACAGGATTGTATGAGTGTTTG 59.527 40.000 0.00 0.00 36.23 2.93
561 562 5.473162 CCAACAGGATTGTATGAGTGTTTGA 59.527 40.000 0.00 0.00 36.23 2.69
562 563 6.151648 CCAACAGGATTGTATGAGTGTTTGAT 59.848 38.462 0.00 0.00 36.23 2.57
563 564 7.309377 CCAACAGGATTGTATGAGTGTTTGATT 60.309 37.037 0.00 0.00 36.23 2.57
564 565 7.765695 ACAGGATTGTATGAGTGTTTGATTT 57.234 32.000 0.00 0.00 35.25 2.17
565 566 8.181904 ACAGGATTGTATGAGTGTTTGATTTT 57.818 30.769 0.00 0.00 35.25 1.82
566 567 8.084073 ACAGGATTGTATGAGTGTTTGATTTTG 58.916 33.333 0.00 0.00 35.25 2.44
567 568 7.062605 CAGGATTGTATGAGTGTTTGATTTTGC 59.937 37.037 0.00 0.00 0.00 3.68
568 569 6.867816 GGATTGTATGAGTGTTTGATTTTGCA 59.132 34.615 0.00 0.00 0.00 4.08
569 570 7.546667 GGATTGTATGAGTGTTTGATTTTGCAT 59.453 33.333 0.00 0.00 0.00 3.96
570 571 9.571810 GATTGTATGAGTGTTTGATTTTGCATA 57.428 29.630 0.00 0.00 0.00 3.14
571 572 8.969121 TTGTATGAGTGTTTGATTTTGCATAG 57.031 30.769 0.00 0.00 0.00 2.23
572 573 8.334263 TGTATGAGTGTTTGATTTTGCATAGA 57.666 30.769 0.00 0.00 0.00 1.98
573 574 8.791675 TGTATGAGTGTTTGATTTTGCATAGAA 58.208 29.630 0.00 0.00 0.00 2.10
574 575 9.624697 GTATGAGTGTTTGATTTTGCATAGAAA 57.375 29.630 0.00 0.00 0.00 2.52
576 577 8.939201 TGAGTGTTTGATTTTGCATAGAAAAA 57.061 26.923 0.00 0.00 0.00 1.94
600 601 8.712228 AAAATGTAGGATTCTTTCAAAGAGGT 57.288 30.769 0.00 0.00 39.03 3.85
601 602 8.712228 AAATGTAGGATTCTTTCAAAGAGGTT 57.288 30.769 0.00 0.00 39.03 3.50
602 603 8.712228 AATGTAGGATTCTTTCAAAGAGGTTT 57.288 30.769 0.00 0.00 39.03 3.27
603 604 7.510549 TGTAGGATTCTTTCAAAGAGGTTTG 57.489 36.000 0.00 0.00 43.96 2.93
612 613 3.754965 TCAAAGAGGTTTGAGTGGATGG 58.245 45.455 0.00 0.00 45.82 3.51
613 614 3.394274 TCAAAGAGGTTTGAGTGGATGGA 59.606 43.478 0.00 0.00 45.82 3.41
614 615 4.141274 TCAAAGAGGTTTGAGTGGATGGAA 60.141 41.667 0.00 0.00 45.82 3.53
615 616 4.453480 AAGAGGTTTGAGTGGATGGAAA 57.547 40.909 0.00 0.00 0.00 3.13
616 617 4.664688 AGAGGTTTGAGTGGATGGAAAT 57.335 40.909 0.00 0.00 0.00 2.17
617 618 5.003096 AGAGGTTTGAGTGGATGGAAATT 57.997 39.130 0.00 0.00 0.00 1.82
618 619 5.397360 AGAGGTTTGAGTGGATGGAAATTT 58.603 37.500 0.00 0.00 0.00 1.82
619 620 5.840693 AGAGGTTTGAGTGGATGGAAATTTT 59.159 36.000 0.00 0.00 0.00 1.82
620 621 6.327365 AGAGGTTTGAGTGGATGGAAATTTTT 59.673 34.615 0.00 0.00 0.00 1.94
621 622 6.524734 AGGTTTGAGTGGATGGAAATTTTTC 58.475 36.000 0.00 0.00 36.46 2.29
622 623 6.099557 AGGTTTGAGTGGATGGAAATTTTTCA 59.900 34.615 5.48 0.00 38.92 2.69
623 624 6.765512 GGTTTGAGTGGATGGAAATTTTTCAA 59.234 34.615 5.48 0.00 38.92 2.69
624 625 7.445096 GGTTTGAGTGGATGGAAATTTTTCAAT 59.555 33.333 5.48 0.00 38.92 2.57
625 626 7.966246 TTGAGTGGATGGAAATTTTTCAATG 57.034 32.000 5.48 0.00 38.92 2.82
626 627 7.300556 TGAGTGGATGGAAATTTTTCAATGA 57.699 32.000 5.48 0.00 38.92 2.57
627 628 7.733969 TGAGTGGATGGAAATTTTTCAATGAA 58.266 30.769 5.48 0.00 38.92 2.57
628 629 8.209584 TGAGTGGATGGAAATTTTTCAATGAAA 58.790 29.630 4.03 4.03 38.92 2.69
629 630 9.223099 GAGTGGATGGAAATTTTTCAATGAAAT 57.777 29.630 9.41 0.00 38.92 2.17
630 631 9.223099 AGTGGATGGAAATTTTTCAATGAAATC 57.777 29.630 9.41 4.06 38.92 2.17
631 632 9.223099 GTGGATGGAAATTTTTCAATGAAATCT 57.777 29.630 9.41 0.00 38.92 2.40
636 637 9.206870 TGGAAATTTTTCAATGAAATCTAGTGC 57.793 29.630 9.41 1.30 38.92 4.40
637 638 9.206870 GGAAATTTTTCAATGAAATCTAGTGCA 57.793 29.630 9.41 0.00 38.92 4.57
642 643 9.761504 TTTTTCAATGAAATCTAGTGCAAATGA 57.238 25.926 9.41 0.00 31.34 2.57
643 644 9.761504 TTTTCAATGAAATCTAGTGCAAATGAA 57.238 25.926 9.41 0.00 31.34 2.57
644 645 9.932207 TTTCAATGAAATCTAGTGCAAATGAAT 57.068 25.926 4.03 0.00 0.00 2.57
645 646 9.577110 TTCAATGAAATCTAGTGCAAATGAATC 57.423 29.630 0.00 0.00 0.00 2.52
646 647 8.963725 TCAATGAAATCTAGTGCAAATGAATCT 58.036 29.630 0.00 0.00 0.00 2.40
647 648 9.582431 CAATGAAATCTAGTGCAAATGAATCTT 57.418 29.630 0.00 0.00 0.00 2.40
683 684 9.745880 TTCCTATGATTTACAATCTTACGAGTC 57.254 33.333 0.00 0.00 0.00 3.36
684 685 8.909923 TCCTATGATTTACAATCTTACGAGTCA 58.090 33.333 0.00 0.00 0.00 3.41
685 686 9.529325 CCTATGATTTACAATCTTACGAGTCAA 57.471 33.333 0.00 0.00 0.00 3.18
688 689 8.596271 TGATTTACAATCTTACGAGTCAAACA 57.404 30.769 0.00 0.00 0.00 2.83
689 690 9.047371 TGATTTACAATCTTACGAGTCAAACAA 57.953 29.630 0.00 0.00 0.00 2.83
690 691 9.314501 GATTTACAATCTTACGAGTCAAACAAC 57.685 33.333 0.00 0.00 0.00 3.32
691 692 5.668558 ACAATCTTACGAGTCAAACAACC 57.331 39.130 0.00 0.00 0.00 3.77
692 693 4.514066 ACAATCTTACGAGTCAAACAACCC 59.486 41.667 0.00 0.00 0.00 4.11
693 694 3.823281 TCTTACGAGTCAAACAACCCA 57.177 42.857 0.00 0.00 0.00 4.51
694 695 3.460103 TCTTACGAGTCAAACAACCCAC 58.540 45.455 0.00 0.00 0.00 4.61
695 696 1.855513 TACGAGTCAAACAACCCACG 58.144 50.000 0.00 0.00 0.00 4.94
696 697 0.108041 ACGAGTCAAACAACCCACGT 60.108 50.000 0.00 0.00 0.00 4.49
697 698 1.136695 ACGAGTCAAACAACCCACGTA 59.863 47.619 0.00 0.00 0.00 3.57
698 699 2.203401 CGAGTCAAACAACCCACGTAA 58.797 47.619 0.00 0.00 0.00 3.18
699 700 6.468765 TTACGAGTCAAACAACCCACGTAAG 61.469 44.000 0.00 0.00 39.05 2.34
700 701 3.460103 GAGTCAAACAACCCACGTAAGA 58.540 45.455 0.00 0.00 43.62 2.10
701 702 3.872771 GAGTCAAACAACCCACGTAAGAA 59.127 43.478 0.00 0.00 43.62 2.52
702 703 4.263435 AGTCAAACAACCCACGTAAGAAA 58.737 39.130 0.00 0.00 43.62 2.52
703 704 4.701171 AGTCAAACAACCCACGTAAGAAAA 59.299 37.500 0.00 0.00 43.62 2.29
704 705 5.032220 GTCAAACAACCCACGTAAGAAAAG 58.968 41.667 0.00 0.00 43.62 2.27
705 706 4.701171 TCAAACAACCCACGTAAGAAAAGT 59.299 37.500 0.00 0.00 43.62 2.66
706 707 5.183522 TCAAACAACCCACGTAAGAAAAGTT 59.816 36.000 0.00 0.00 43.62 2.66
707 708 4.888038 ACAACCCACGTAAGAAAAGTTC 57.112 40.909 0.00 0.00 43.62 3.01
708 709 4.520179 ACAACCCACGTAAGAAAAGTTCT 58.480 39.130 0.00 0.00 43.15 3.01
763 764 8.749354 TGAGAATCCTTTAAATAAAAGAAGCCC 58.251 33.333 0.00 0.00 46.44 5.19
764 765 8.901472 AGAATCCTTTAAATAAAAGAAGCCCT 57.099 30.769 0.00 0.00 46.44 5.19
765 766 9.326489 AGAATCCTTTAAATAAAAGAAGCCCTT 57.674 29.630 0.00 0.00 46.44 3.95
794 795 7.609056 AGTTTTTCTCCATCAAGATCAAATGG 58.391 34.615 12.48 12.48 41.12 3.16
812 813 8.413309 TCAAATGGAGAAGAGATCAATGTTTT 57.587 30.769 0.00 0.00 0.00 2.43
827 836 9.178758 GATCAATGTTTTTAGGACAATAGAGGT 57.821 33.333 0.00 0.00 0.00 3.85
866 881 8.764558 TGGTTCATTAACTCAACCTATTAGCTA 58.235 33.333 11.47 0.00 40.37 3.32
881 896 1.703411 AGCTAAGCTAGGCTCCTCAG 58.297 55.000 7.43 0.00 38.25 3.35
931 968 1.153529 CTCCTGCAGCTCAGCTCAG 60.154 63.158 8.66 15.48 41.50 3.35
932 969 2.820479 CCTGCAGCTCAGCTCAGC 60.820 66.667 8.66 0.00 41.50 4.26
941 978 0.457035 CTCAGCTCAGCTCACTCTCC 59.543 60.000 0.00 0.00 36.40 3.71
945 982 1.675720 GCTCAGCTCACTCTCCCTCC 61.676 65.000 0.00 0.00 0.00 4.30
949 986 2.363172 GCTCACTCTCCCTCCCACC 61.363 68.421 0.00 0.00 0.00 4.61
950 987 1.079256 CTCACTCTCCCTCCCACCA 59.921 63.158 0.00 0.00 0.00 4.17
1233 1270 0.040351 TCCTCCACTCTCACCTCCTG 59.960 60.000 0.00 0.00 0.00 3.86
1452 1489 4.020617 CTGCTCCTCGCCAACCCA 62.021 66.667 0.00 0.00 38.05 4.51
1649 1686 3.003763 GTCCTCCGGCTTCTGGGT 61.004 66.667 0.00 0.00 0.00 4.51
1686 1723 3.827898 CGCCTGTCCTCCCTCGAC 61.828 72.222 0.00 0.00 0.00 4.20
1743 1780 1.065782 TCTCACTCTCTCTGTCCCTCG 60.066 57.143 0.00 0.00 0.00 4.63
1749 1786 0.102120 CTCTCTGTCCCTCGCACATC 59.898 60.000 0.00 0.00 0.00 3.06
1783 1821 7.700846 TGGAAAGGGGTTCTTGTACATATTTA 58.299 34.615 0.00 0.00 36.40 1.40
1788 1826 9.990868 AAGGGGTTCTTGTACATATTTATTTCT 57.009 29.630 0.00 0.00 33.76 2.52
1819 1857 3.492421 CAAGAATGGATCGGGTTGTTG 57.508 47.619 0.00 0.00 0.00 3.33
1820 1858 2.819608 CAAGAATGGATCGGGTTGTTGT 59.180 45.455 5.58 0.00 0.00 3.32
1821 1859 3.992943 AGAATGGATCGGGTTGTTGTA 57.007 42.857 0.00 0.00 0.00 2.41
1822 1860 3.606687 AGAATGGATCGGGTTGTTGTAC 58.393 45.455 0.00 0.00 0.00 2.90
1823 1861 3.008594 AGAATGGATCGGGTTGTTGTACA 59.991 43.478 0.00 0.00 0.00 2.90
1824 1862 3.644966 ATGGATCGGGTTGTTGTACAT 57.355 42.857 0.00 0.00 0.00 2.29
1825 1863 2.980568 TGGATCGGGTTGTTGTACATC 58.019 47.619 0.00 0.00 0.00 3.06
1826 1864 2.303311 TGGATCGGGTTGTTGTACATCA 59.697 45.455 2.41 2.41 0.00 3.07
1827 1865 3.054728 TGGATCGGGTTGTTGTACATCAT 60.055 43.478 7.43 0.00 0.00 2.45
1828 1866 3.945285 GGATCGGGTTGTTGTACATCATT 59.055 43.478 7.43 0.00 0.00 2.57
1829 1867 5.120399 GGATCGGGTTGTTGTACATCATTA 58.880 41.667 7.43 0.00 0.00 1.90
1830 1868 5.763204 GGATCGGGTTGTTGTACATCATTAT 59.237 40.000 7.43 0.00 0.00 1.28
1831 1869 6.932400 GGATCGGGTTGTTGTACATCATTATA 59.068 38.462 7.43 0.00 0.00 0.98
1832 1870 7.442969 GGATCGGGTTGTTGTACATCATTATAA 59.557 37.037 7.43 0.00 0.00 0.98
1833 1871 8.740123 ATCGGGTTGTTGTACATCATTATAAA 57.260 30.769 7.43 0.00 0.00 1.40
1834 1872 8.740123 TCGGGTTGTTGTACATCATTATAAAT 57.260 30.769 7.43 0.00 0.00 1.40
1835 1873 8.616942 TCGGGTTGTTGTACATCATTATAAATG 58.383 33.333 7.43 0.00 0.00 2.32
1836 1874 7.860373 CGGGTTGTTGTACATCATTATAAATGG 59.140 37.037 7.43 0.00 0.00 3.16
1837 1875 8.141268 GGGTTGTTGTACATCATTATAAATGGG 58.859 37.037 7.43 0.00 0.00 4.00
2543 2590 6.721318 ACACCCTGCTCTTAATTTCTAATGA 58.279 36.000 0.00 0.00 0.00 2.57
2702 2753 7.504926 AGACAGGTTTTGAATGGGTAGTATA 57.495 36.000 0.00 0.00 0.00 1.47
2904 2982 6.756299 AAAATTTGCCAACATTTGACAACT 57.244 29.167 0.00 0.00 32.68 3.16
2954 3032 4.888326 ATGCAACCAATCTTTAGCCAAA 57.112 36.364 0.00 0.00 0.00 3.28
3104 3183 8.830580 CAATGGTATTGAAGTACTATGTGGAAG 58.169 37.037 0.00 0.00 0.00 3.46
3191 3274 8.288208 CCATTGACTTCATATTTGCTCAGATAC 58.712 37.037 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.156008 CCTGCATACAACTAGAAACCCAAC 59.844 45.833 0.00 0.00 0.00 3.77
1 2 4.331968 CCTGCATACAACTAGAAACCCAA 58.668 43.478 0.00 0.00 0.00 4.12
2 3 3.872240 GCCTGCATACAACTAGAAACCCA 60.872 47.826 0.00 0.00 0.00 4.51
4 5 2.683362 GGCCTGCATACAACTAGAAACC 59.317 50.000 0.00 0.00 0.00 3.27
5 6 2.351726 CGGCCTGCATACAACTAGAAAC 59.648 50.000 0.00 0.00 0.00 2.78
6 7 2.027561 ACGGCCTGCATACAACTAGAAA 60.028 45.455 0.00 0.00 0.00 2.52
7 8 1.553248 ACGGCCTGCATACAACTAGAA 59.447 47.619 0.00 0.00 0.00 2.10
8 9 1.134818 CACGGCCTGCATACAACTAGA 60.135 52.381 0.00 0.00 0.00 2.43
9 10 1.290203 CACGGCCTGCATACAACTAG 58.710 55.000 0.00 0.00 0.00 2.57
10 11 0.742990 GCACGGCCTGCATACAACTA 60.743 55.000 18.68 0.00 46.29 2.24
11 12 2.040544 GCACGGCCTGCATACAACT 61.041 57.895 18.68 0.00 46.29 3.16
12 13 2.485122 GCACGGCCTGCATACAAC 59.515 61.111 18.68 0.00 46.29 3.32
26 27 4.778143 CACCTACTGGGCCGGCAC 62.778 72.222 30.85 28.40 39.10 5.01
28 29 4.162690 CTCACCTACTGGGCCGGC 62.163 72.222 21.18 21.18 39.10 6.13
29 30 4.162690 GCTCACCTACTGGGCCGG 62.163 72.222 11.83 11.83 41.09 6.13
33 34 2.568623 AAAACAGCTCACCTACTGGG 57.431 50.000 0.00 0.00 38.25 4.45
69 70 5.242171 CACCAACCGGTACTAAAGGATTTTT 59.758 40.000 8.00 0.00 46.94 1.94
70 71 4.763279 CACCAACCGGTACTAAAGGATTTT 59.237 41.667 8.00 0.00 46.94 1.82
71 72 4.202493 ACACCAACCGGTACTAAAGGATTT 60.202 41.667 8.00 0.00 46.94 2.17
72 73 3.328637 ACACCAACCGGTACTAAAGGATT 59.671 43.478 8.00 0.00 46.94 3.01
73 74 2.908351 ACACCAACCGGTACTAAAGGAT 59.092 45.455 8.00 0.00 46.94 3.24
74 75 2.328319 ACACCAACCGGTACTAAAGGA 58.672 47.619 8.00 0.00 46.94 3.36
75 76 2.845363 ACACCAACCGGTACTAAAGG 57.155 50.000 8.00 6.03 46.94 3.11
76 77 3.996363 GGTAACACCAACCGGTACTAAAG 59.004 47.826 8.00 0.00 46.94 1.85
77 78 4.001618 GGTAACACCAACCGGTACTAAA 57.998 45.455 8.00 0.00 46.94 1.85
78 79 3.676291 GGTAACACCAACCGGTACTAA 57.324 47.619 8.00 0.00 46.94 2.24
97 98 1.378119 GCCCTTTAGGACCGGTTGG 60.378 63.158 9.42 4.66 38.24 3.77
98 99 0.392595 GAGCCCTTTAGGACCGGTTG 60.393 60.000 9.42 0.00 38.24 3.77
99 100 1.559965 GGAGCCCTTTAGGACCGGTT 61.560 60.000 9.42 0.00 38.24 4.44
100 101 1.993948 GGAGCCCTTTAGGACCGGT 60.994 63.158 6.92 6.92 38.24 5.28
101 102 2.743179 GGGAGCCCTTTAGGACCGG 61.743 68.421 0.00 0.00 38.24 5.28
102 103 2.743179 GGGGAGCCCTTTAGGACCG 61.743 68.421 5.38 0.00 41.34 4.79
103 104 3.332395 GGGGAGCCCTTTAGGACC 58.668 66.667 5.38 0.00 41.34 4.46
142 143 2.332654 GCTAAAGGGCCACCACGTG 61.333 63.158 9.08 9.08 40.13 4.49
143 144 2.033602 GCTAAAGGGCCACCACGT 59.966 61.111 6.18 0.00 40.13 4.49
144 145 3.124921 CGCTAAAGGGCCACCACG 61.125 66.667 6.18 0.00 40.13 4.94
145 146 2.038837 GTCGCTAAAGGGCCACCAC 61.039 63.158 6.18 0.00 40.13 4.16
146 147 2.349755 GTCGCTAAAGGGCCACCA 59.650 61.111 6.18 0.00 40.13 4.17
147 148 2.588856 ATCGTCGCTAAAGGGCCACC 62.589 60.000 6.18 0.00 0.00 4.61
148 149 0.743345 AATCGTCGCTAAAGGGCCAC 60.743 55.000 6.18 0.00 0.00 5.01
149 150 0.461339 GAATCGTCGCTAAAGGGCCA 60.461 55.000 6.18 0.00 0.00 5.36
150 151 1.488261 CGAATCGTCGCTAAAGGGCC 61.488 60.000 0.00 0.00 41.08 5.80
151 152 1.925052 CGAATCGTCGCTAAAGGGC 59.075 57.895 0.00 0.00 41.08 5.19
161 162 0.716108 CCAGTTCTGCACGAATCGTC 59.284 55.000 4.88 1.69 38.32 4.20
162 163 0.033504 ACCAGTTCTGCACGAATCGT 59.966 50.000 0.96 0.96 42.36 3.73
163 164 1.654105 GTACCAGTTCTGCACGAATCG 59.346 52.381 0.00 0.00 33.45 3.34
164 165 2.960819 AGTACCAGTTCTGCACGAATC 58.039 47.619 0.00 0.00 33.45 2.52
165 166 4.530710 TTAGTACCAGTTCTGCACGAAT 57.469 40.909 0.00 0.00 33.45 3.34
166 167 4.304110 CTTTAGTACCAGTTCTGCACGAA 58.696 43.478 0.00 0.00 0.00 3.85
167 168 3.305813 CCTTTAGTACCAGTTCTGCACGA 60.306 47.826 0.00 0.00 0.00 4.35
168 169 2.993899 CCTTTAGTACCAGTTCTGCACG 59.006 50.000 0.00 0.00 0.00 5.34
169 170 3.335579 CCCTTTAGTACCAGTTCTGCAC 58.664 50.000 0.00 0.00 0.00 4.57
170 171 2.304761 CCCCTTTAGTACCAGTTCTGCA 59.695 50.000 0.00 0.00 0.00 4.41
171 172 2.355818 CCCCCTTTAGTACCAGTTCTGC 60.356 54.545 0.00 0.00 0.00 4.26
172 173 3.629142 CCCCCTTTAGTACCAGTTCTG 57.371 52.381 0.00 0.00 0.00 3.02
194 195 1.369403 AAGGGTGGGGACTAAAGGTC 58.631 55.000 0.00 0.00 43.79 3.85
195 196 1.842699 AAAGGGTGGGGACTAAAGGT 58.157 50.000 0.00 0.00 0.00 3.50
196 197 2.917600 ACTAAAGGGTGGGGACTAAAGG 59.082 50.000 0.00 0.00 0.00 3.11
197 198 3.872630 GCACTAAAGGGTGGGGACTAAAG 60.873 52.174 0.00 0.00 37.65 1.85
198 199 2.040679 GCACTAAAGGGTGGGGACTAAA 59.959 50.000 0.00 0.00 37.65 1.85
199 200 1.631898 GCACTAAAGGGTGGGGACTAA 59.368 52.381 0.00 0.00 37.65 2.24
200 201 1.282382 GCACTAAAGGGTGGGGACTA 58.718 55.000 0.00 0.00 37.65 2.59
201 202 1.498176 GGCACTAAAGGGTGGGGACT 61.498 60.000 0.00 0.00 37.65 3.85
202 203 1.001269 GGCACTAAAGGGTGGGGAC 60.001 63.158 0.00 0.00 37.65 4.46
203 204 2.598787 CGGCACTAAAGGGTGGGGA 61.599 63.158 0.00 0.00 37.65 4.81
204 205 2.045340 CGGCACTAAAGGGTGGGG 60.045 66.667 0.00 0.00 37.65 4.96
205 206 2.045340 CCGGCACTAAAGGGTGGG 60.045 66.667 0.00 0.00 37.65 4.61
206 207 0.325602 TAACCGGCACTAAAGGGTGG 59.674 55.000 0.00 0.00 37.65 4.61
207 208 1.270947 TGTAACCGGCACTAAAGGGTG 60.271 52.381 0.00 0.00 39.91 4.61
208 209 1.002773 CTGTAACCGGCACTAAAGGGT 59.997 52.381 0.00 0.00 0.00 4.34
209 210 1.276989 TCTGTAACCGGCACTAAAGGG 59.723 52.381 0.00 0.00 0.00 3.95
210 211 2.740447 GTTCTGTAACCGGCACTAAAGG 59.260 50.000 0.00 0.00 0.00 3.11
211 212 2.740447 GGTTCTGTAACCGGCACTAAAG 59.260 50.000 0.00 0.00 45.61 1.85
212 213 2.769893 GGTTCTGTAACCGGCACTAAA 58.230 47.619 0.00 0.00 45.61 1.85
213 214 2.460757 GGTTCTGTAACCGGCACTAA 57.539 50.000 0.00 0.00 45.61 2.24
222 223 2.740447 CCTTTAGTGCCGGTTCTGTAAC 59.260 50.000 1.90 0.00 34.66 2.50
223 224 2.289819 CCCTTTAGTGCCGGTTCTGTAA 60.290 50.000 1.90 1.06 0.00 2.41
224 225 1.276989 CCCTTTAGTGCCGGTTCTGTA 59.723 52.381 1.90 0.00 0.00 2.74
225 226 0.036306 CCCTTTAGTGCCGGTTCTGT 59.964 55.000 1.90 0.00 0.00 3.41
226 227 1.305930 GCCCTTTAGTGCCGGTTCTG 61.306 60.000 1.90 0.00 0.00 3.02
227 228 1.002502 GCCCTTTAGTGCCGGTTCT 60.003 57.895 1.90 4.41 0.00 3.01
228 229 2.044555 GGCCCTTTAGTGCCGGTTC 61.045 63.158 1.90 0.00 38.00 3.62
229 230 2.035155 GGCCCTTTAGTGCCGGTT 59.965 61.111 1.90 0.00 38.00 4.44
234 235 2.688446 GGTTCATAAGGCCCTTTAGTGC 59.312 50.000 0.00 0.00 0.00 4.40
235 236 2.943033 CGGTTCATAAGGCCCTTTAGTG 59.057 50.000 0.00 0.00 0.00 2.74
236 237 2.092592 CCGGTTCATAAGGCCCTTTAGT 60.093 50.000 0.00 0.00 0.00 2.24
237 238 2.092592 ACCGGTTCATAAGGCCCTTTAG 60.093 50.000 0.00 0.00 0.00 1.85
238 239 1.917568 ACCGGTTCATAAGGCCCTTTA 59.082 47.619 0.00 0.00 0.00 1.85
239 240 0.702316 ACCGGTTCATAAGGCCCTTT 59.298 50.000 0.00 0.00 0.00 3.11
240 241 0.034477 CACCGGTTCATAAGGCCCTT 60.034 55.000 2.97 0.00 0.00 3.95
241 242 1.205460 ACACCGGTTCATAAGGCCCT 61.205 55.000 2.97 0.00 0.00 5.19
242 243 0.323087 AACACCGGTTCATAAGGCCC 60.323 55.000 2.97 0.00 29.00 5.80
243 244 0.808755 CAACACCGGTTCATAAGGCC 59.191 55.000 2.97 0.00 34.21 5.19
244 245 1.530323 ACAACACCGGTTCATAAGGC 58.470 50.000 2.97 0.00 34.21 4.35
245 246 2.676342 GCTACAACACCGGTTCATAAGG 59.324 50.000 2.97 0.00 34.21 2.69
246 247 2.676342 GGCTACAACACCGGTTCATAAG 59.324 50.000 2.97 0.90 34.21 1.73
247 248 2.303600 AGGCTACAACACCGGTTCATAA 59.696 45.455 2.97 0.00 34.21 1.90
248 249 1.903860 AGGCTACAACACCGGTTCATA 59.096 47.619 2.97 0.00 34.21 2.15
249 250 0.690762 AGGCTACAACACCGGTTCAT 59.309 50.000 2.97 0.00 34.21 2.57
250 251 0.250124 CAGGCTACAACACCGGTTCA 60.250 55.000 2.97 0.00 34.21 3.18
251 252 0.953960 CCAGGCTACAACACCGGTTC 60.954 60.000 2.97 0.00 34.21 3.62
252 253 1.072505 CCAGGCTACAACACCGGTT 59.927 57.895 2.97 0.00 37.87 4.44
253 254 1.702022 AACCAGGCTACAACACCGGT 61.702 55.000 0.00 0.00 35.35 5.28
254 255 0.953960 GAACCAGGCTACAACACCGG 60.954 60.000 0.00 0.00 0.00 5.28
255 256 0.034896 AGAACCAGGCTACAACACCG 59.965 55.000 0.00 0.00 0.00 4.94
256 257 1.523758 CAGAACCAGGCTACAACACC 58.476 55.000 0.00 0.00 0.00 4.16
257 258 0.875059 GCAGAACCAGGCTACAACAC 59.125 55.000 0.00 0.00 0.00 3.32
258 259 0.472044 TGCAGAACCAGGCTACAACA 59.528 50.000 0.00 0.00 0.00 3.33
259 260 0.875059 GTGCAGAACCAGGCTACAAC 59.125 55.000 0.00 0.00 0.00 3.32
260 261 0.764890 AGTGCAGAACCAGGCTACAA 59.235 50.000 0.00 0.00 0.00 2.41
261 262 1.550524 CTAGTGCAGAACCAGGCTACA 59.449 52.381 0.00 0.00 0.00 2.74
262 263 1.550976 ACTAGTGCAGAACCAGGCTAC 59.449 52.381 0.00 0.00 0.00 3.58
263 264 1.550524 CACTAGTGCAGAACCAGGCTA 59.449 52.381 10.54 0.00 0.00 3.93
264 265 0.322975 CACTAGTGCAGAACCAGGCT 59.677 55.000 10.54 0.00 0.00 4.58
265 266 2.846371 CACTAGTGCAGAACCAGGC 58.154 57.895 10.54 0.00 0.00 4.85
276 277 6.974965 TGTACATGATCTATCTGCACTAGTG 58.025 40.000 18.93 18.93 0.00 2.74
277 278 7.588497 TTGTACATGATCTATCTGCACTAGT 57.412 36.000 0.00 0.00 0.00 2.57
278 279 7.383572 GGTTTGTACATGATCTATCTGCACTAG 59.616 40.741 0.00 0.00 0.00 2.57
279 280 7.210174 GGTTTGTACATGATCTATCTGCACTA 58.790 38.462 0.00 0.00 0.00 2.74
280 281 6.051717 GGTTTGTACATGATCTATCTGCACT 58.948 40.000 0.00 0.00 0.00 4.40
281 282 5.237344 GGGTTTGTACATGATCTATCTGCAC 59.763 44.000 0.00 0.00 0.00 4.57
282 283 5.368145 GGGTTTGTACATGATCTATCTGCA 58.632 41.667 0.00 0.00 0.00 4.41
283 284 4.757149 GGGGTTTGTACATGATCTATCTGC 59.243 45.833 0.00 0.00 0.00 4.26
284 285 6.179906 AGGGGTTTGTACATGATCTATCTG 57.820 41.667 0.00 0.00 0.00 2.90
285 286 5.011125 CGAGGGGTTTGTACATGATCTATCT 59.989 44.000 0.00 0.00 0.00 1.98
286 287 5.230942 CGAGGGGTTTGTACATGATCTATC 58.769 45.833 0.00 0.00 0.00 2.08
287 288 4.503296 GCGAGGGGTTTGTACATGATCTAT 60.503 45.833 0.00 0.00 0.00 1.98
288 289 3.181469 GCGAGGGGTTTGTACATGATCTA 60.181 47.826 0.00 0.00 0.00 1.98
289 290 2.420129 GCGAGGGGTTTGTACATGATCT 60.420 50.000 0.00 0.00 0.00 2.75
290 291 1.940613 GCGAGGGGTTTGTACATGATC 59.059 52.381 0.00 0.00 0.00 2.92
291 292 1.408266 GGCGAGGGGTTTGTACATGAT 60.408 52.381 0.00 0.00 0.00 2.45
292 293 0.035820 GGCGAGGGGTTTGTACATGA 60.036 55.000 0.00 0.00 0.00 3.07
293 294 1.366111 CGGCGAGGGGTTTGTACATG 61.366 60.000 0.00 0.00 0.00 3.21
294 295 1.078708 CGGCGAGGGGTTTGTACAT 60.079 57.895 0.00 0.00 0.00 2.29
295 296 2.344500 CGGCGAGGGGTTTGTACA 59.656 61.111 0.00 0.00 0.00 2.90
296 297 3.122971 GCGGCGAGGGGTTTGTAC 61.123 66.667 12.98 0.00 0.00 2.90
297 298 4.745751 CGCGGCGAGGGGTTTGTA 62.746 66.667 19.16 0.00 0.00 2.41
313 314 1.067582 GATAGGGTTGCGACCTCCG 59.932 63.158 22.72 0.00 45.75 4.63
314 315 0.389757 GAGATAGGGTTGCGACCTCC 59.610 60.000 22.72 7.18 45.75 4.30
315 316 0.030908 CGAGATAGGGTTGCGACCTC 59.969 60.000 22.72 12.52 45.75 3.85
316 317 0.683504 ACGAGATAGGGTTGCGACCT 60.684 55.000 22.72 10.84 45.75 3.85
317 318 0.527817 CACGAGATAGGGTTGCGACC 60.528 60.000 15.51 15.51 45.75 4.79
318 319 1.146358 GCACGAGATAGGGTTGCGAC 61.146 60.000 0.00 0.00 0.00 5.19
319 320 1.141019 GCACGAGATAGGGTTGCGA 59.859 57.895 0.00 0.00 0.00 5.10
320 321 0.872021 GAGCACGAGATAGGGTTGCG 60.872 60.000 0.00 0.00 0.00 4.85
321 322 0.872021 CGAGCACGAGATAGGGTTGC 60.872 60.000 0.00 0.00 42.66 4.17
322 323 0.249073 CCGAGCACGAGATAGGGTTG 60.249 60.000 4.70 0.00 42.66 3.77
323 324 2.017559 GCCGAGCACGAGATAGGGTT 62.018 60.000 4.70 0.00 42.66 4.11
324 325 2.491022 GCCGAGCACGAGATAGGGT 61.491 63.158 4.70 0.00 42.66 4.34
325 326 2.336809 GCCGAGCACGAGATAGGG 59.663 66.667 4.70 0.00 42.66 3.53
326 327 2.336809 GGCCGAGCACGAGATAGG 59.663 66.667 4.70 0.00 42.66 2.57
327 328 1.299468 GTGGCCGAGCACGAGATAG 60.299 63.158 4.70 0.00 42.66 2.08
328 329 2.782222 GGTGGCCGAGCACGAGATA 61.782 63.158 4.70 0.00 42.66 1.98
329 330 4.148825 GGTGGCCGAGCACGAGAT 62.149 66.667 4.70 0.00 42.66 2.75
362 363 2.641439 GATGGAGAGAGGCAGCGGTG 62.641 65.000 10.98 10.98 0.00 4.94
363 364 2.364842 ATGGAGAGAGGCAGCGGT 60.365 61.111 0.00 0.00 0.00 5.68
364 365 2.366480 CTGATGGAGAGAGGCAGCGG 62.366 65.000 0.00 0.00 0.00 5.52
365 366 1.067749 CTGATGGAGAGAGGCAGCG 59.932 63.158 0.00 0.00 0.00 5.18
366 367 1.047596 TCCTGATGGAGAGAGGCAGC 61.048 60.000 0.00 0.00 37.46 5.25
367 368 1.493861 TTCCTGATGGAGAGAGGCAG 58.506 55.000 0.00 0.00 44.24 4.85
368 369 2.187239 ATTCCTGATGGAGAGAGGCA 57.813 50.000 0.00 0.00 44.24 4.75
369 370 2.028203 GCTATTCCTGATGGAGAGAGGC 60.028 54.545 0.00 0.00 44.24 4.70
370 371 3.237746 TGCTATTCCTGATGGAGAGAGG 58.762 50.000 0.00 0.00 44.24 3.69
371 372 4.022068 GTCTGCTATTCCTGATGGAGAGAG 60.022 50.000 0.00 0.00 44.24 3.20
372 373 3.894427 GTCTGCTATTCCTGATGGAGAGA 59.106 47.826 0.00 0.00 44.24 3.10
373 374 3.305267 CGTCTGCTATTCCTGATGGAGAG 60.305 52.174 0.00 0.00 44.24 3.20
374 375 2.625314 CGTCTGCTATTCCTGATGGAGA 59.375 50.000 0.00 0.00 44.24 3.71
375 376 2.865670 GCGTCTGCTATTCCTGATGGAG 60.866 54.545 0.00 0.00 40.04 3.86
376 377 1.069204 GCGTCTGCTATTCCTGATGGA 59.931 52.381 0.00 0.00 38.26 3.41
377 378 1.202568 TGCGTCTGCTATTCCTGATGG 60.203 52.381 0.00 0.00 43.34 3.51
378 379 2.133553 CTGCGTCTGCTATTCCTGATG 58.866 52.381 0.00 0.00 43.34 3.07
379 380 2.034878 TCTGCGTCTGCTATTCCTGAT 58.965 47.619 0.00 0.00 43.34 2.90
380 381 1.474330 TCTGCGTCTGCTATTCCTGA 58.526 50.000 0.00 0.00 43.34 3.86
381 382 2.299993 TTCTGCGTCTGCTATTCCTG 57.700 50.000 0.00 0.00 43.34 3.86
382 383 2.419297 CCTTTCTGCGTCTGCTATTCCT 60.419 50.000 0.00 0.00 43.34 3.36
383 384 1.936547 CCTTTCTGCGTCTGCTATTCC 59.063 52.381 0.00 0.00 43.34 3.01
384 385 2.893637 TCCTTTCTGCGTCTGCTATTC 58.106 47.619 0.00 0.00 43.34 1.75
385 386 3.334583 TTCCTTTCTGCGTCTGCTATT 57.665 42.857 0.00 0.00 43.34 1.73
386 387 3.334583 TTTCCTTTCTGCGTCTGCTAT 57.665 42.857 0.00 0.00 43.34 2.97
387 388 2.806244 GTTTTCCTTTCTGCGTCTGCTA 59.194 45.455 0.00 0.00 43.34 3.49
388 389 1.604278 GTTTTCCTTTCTGCGTCTGCT 59.396 47.619 0.00 0.00 43.34 4.24
389 390 1.335051 GGTTTTCCTTTCTGCGTCTGC 60.335 52.381 0.00 0.00 38.19 4.26
390 391 1.266989 GGGTTTTCCTTTCTGCGTCTG 59.733 52.381 0.00 0.00 40.46 3.51
391 392 1.143073 AGGGTTTTCCTTTCTGCGTCT 59.857 47.619 0.00 0.00 45.47 4.18
392 393 1.605753 AGGGTTTTCCTTTCTGCGTC 58.394 50.000 0.00 0.00 45.47 5.19
393 394 2.943036 TAGGGTTTTCCTTTCTGCGT 57.057 45.000 0.00 0.00 45.47 5.24
394 395 2.488153 CCTTAGGGTTTTCCTTTCTGCG 59.512 50.000 0.00 0.00 45.47 5.18
395 396 2.231478 GCCTTAGGGTTTTCCTTTCTGC 59.769 50.000 0.00 0.00 45.47 4.26
396 397 3.496331 TGCCTTAGGGTTTTCCTTTCTG 58.504 45.455 0.00 0.00 45.47 3.02
397 398 3.895656 GTTGCCTTAGGGTTTTCCTTTCT 59.104 43.478 0.00 0.00 45.47 2.52
398 399 3.895656 AGTTGCCTTAGGGTTTTCCTTTC 59.104 43.478 0.00 0.00 45.47 2.62
399 400 3.923648 AGTTGCCTTAGGGTTTTCCTTT 58.076 40.909 0.00 0.00 45.47 3.11
400 401 3.612795 AGTTGCCTTAGGGTTTTCCTT 57.387 42.857 0.00 0.00 45.47 3.36
401 402 4.352893 TCTAAGTTGCCTTAGGGTTTTCCT 59.647 41.667 0.00 0.00 46.80 3.36
402 403 4.659115 TCTAAGTTGCCTTAGGGTTTTCC 58.341 43.478 0.00 0.00 46.80 3.13
403 404 6.835819 ATTCTAAGTTGCCTTAGGGTTTTC 57.164 37.500 0.00 0.00 46.80 2.29
404 405 6.780522 TCAATTCTAAGTTGCCTTAGGGTTTT 59.219 34.615 0.00 0.00 46.80 2.43
405 406 6.208797 GTCAATTCTAAGTTGCCTTAGGGTTT 59.791 38.462 0.00 0.89 46.80 3.27
406 407 5.710567 GTCAATTCTAAGTTGCCTTAGGGTT 59.289 40.000 0.00 3.61 46.80 4.11
407 408 5.222048 TGTCAATTCTAAGTTGCCTTAGGGT 60.222 40.000 0.00 0.00 46.80 4.34
408 409 5.253330 TGTCAATTCTAAGTTGCCTTAGGG 58.747 41.667 0.00 0.00 46.80 3.53
409 410 6.817765 TTGTCAATTCTAAGTTGCCTTAGG 57.182 37.500 9.14 0.00 46.80 2.69
411 412 7.136119 CGTTTTGTCAATTCTAAGTTGCCTTA 58.864 34.615 0.00 0.00 31.89 2.69
412 413 5.977129 CGTTTTGTCAATTCTAAGTTGCCTT 59.023 36.000 0.00 0.00 34.56 4.35
413 414 5.519722 CGTTTTGTCAATTCTAAGTTGCCT 58.480 37.500 0.00 0.00 0.00 4.75
414 415 4.148174 GCGTTTTGTCAATTCTAAGTTGCC 59.852 41.667 0.00 0.00 0.00 4.52
415 416 4.737765 TGCGTTTTGTCAATTCTAAGTTGC 59.262 37.500 0.00 0.00 0.00 4.17
416 417 5.741510 TGTGCGTTTTGTCAATTCTAAGTTG 59.258 36.000 0.00 0.00 0.00 3.16
417 418 5.885881 TGTGCGTTTTGTCAATTCTAAGTT 58.114 33.333 0.00 0.00 0.00 2.66
418 419 5.493133 TGTGCGTTTTGTCAATTCTAAGT 57.507 34.783 0.00 0.00 0.00 2.24
419 420 6.291585 GGTTTGTGCGTTTTGTCAATTCTAAG 60.292 38.462 0.00 0.00 0.00 2.18
420 421 5.517054 GGTTTGTGCGTTTTGTCAATTCTAA 59.483 36.000 0.00 0.00 0.00 2.10
421 422 5.038033 GGTTTGTGCGTTTTGTCAATTCTA 58.962 37.500 0.00 0.00 0.00 2.10
422 423 3.862845 GGTTTGTGCGTTTTGTCAATTCT 59.137 39.130 0.00 0.00 0.00 2.40
423 424 3.862845 AGGTTTGTGCGTTTTGTCAATTC 59.137 39.130 0.00 0.00 0.00 2.17
424 425 3.855858 AGGTTTGTGCGTTTTGTCAATT 58.144 36.364 0.00 0.00 0.00 2.32
425 426 3.518634 AGGTTTGTGCGTTTTGTCAAT 57.481 38.095 0.00 0.00 0.00 2.57
426 427 3.732471 GCTAGGTTTGTGCGTTTTGTCAA 60.732 43.478 0.00 0.00 0.00 3.18
427 428 2.223386 GCTAGGTTTGTGCGTTTTGTCA 60.223 45.455 0.00 0.00 0.00 3.58
428 429 2.223386 TGCTAGGTTTGTGCGTTTTGTC 60.223 45.455 0.00 0.00 0.00 3.18
429 430 1.746220 TGCTAGGTTTGTGCGTTTTGT 59.254 42.857 0.00 0.00 0.00 2.83
430 431 2.116366 GTGCTAGGTTTGTGCGTTTTG 58.884 47.619 0.00 0.00 0.00 2.44
431 432 2.021457 AGTGCTAGGTTTGTGCGTTTT 58.979 42.857 0.00 0.00 0.00 2.43
432 433 1.602377 GAGTGCTAGGTTTGTGCGTTT 59.398 47.619 0.00 0.00 0.00 3.60
433 434 1.226746 GAGTGCTAGGTTTGTGCGTT 58.773 50.000 0.00 0.00 0.00 4.84
434 435 0.602905 GGAGTGCTAGGTTTGTGCGT 60.603 55.000 0.00 0.00 0.00 5.24
435 436 0.320771 AGGAGTGCTAGGTTTGTGCG 60.321 55.000 0.00 0.00 0.00 5.34
436 437 2.762535 TAGGAGTGCTAGGTTTGTGC 57.237 50.000 0.00 0.00 0.00 4.57
437 438 5.122396 GTCATTTAGGAGTGCTAGGTTTGTG 59.878 44.000 0.00 0.00 0.00 3.33
438 439 5.221843 TGTCATTTAGGAGTGCTAGGTTTGT 60.222 40.000 0.00 0.00 0.00 2.83
439 440 5.245531 TGTCATTTAGGAGTGCTAGGTTTG 58.754 41.667 0.00 0.00 0.00 2.93
440 441 5.499004 TGTCATTTAGGAGTGCTAGGTTT 57.501 39.130 0.00 0.00 0.00 3.27
441 442 5.221843 TGTTGTCATTTAGGAGTGCTAGGTT 60.222 40.000 0.00 0.00 0.00 3.50
442 443 4.286032 TGTTGTCATTTAGGAGTGCTAGGT 59.714 41.667 0.00 0.00 0.00 3.08
443 444 4.832248 TGTTGTCATTTAGGAGTGCTAGG 58.168 43.478 0.00 0.00 0.00 3.02
444 445 6.992063 AATGTTGTCATTTAGGAGTGCTAG 57.008 37.500 0.00 0.00 40.88 3.42
456 457 6.045072 TCCTACGACCTAAATGTTGTCATT 57.955 37.500 0.00 0.00 44.94 2.57
457 458 5.670792 TCCTACGACCTAAATGTTGTCAT 57.329 39.130 0.00 0.00 34.66 3.06
458 459 5.670792 ATCCTACGACCTAAATGTTGTCA 57.329 39.130 0.00 0.00 34.66 3.58
459 460 6.036844 GGAAATCCTACGACCTAAATGTTGTC 59.963 42.308 0.00 0.00 34.66 3.18
460 461 5.878669 GGAAATCCTACGACCTAAATGTTGT 59.121 40.000 0.00 0.00 36.77 3.32
461 462 5.878116 TGGAAATCCTACGACCTAAATGTTG 59.122 40.000 0.44 0.00 36.82 3.33
462 463 6.057321 TGGAAATCCTACGACCTAAATGTT 57.943 37.500 0.44 0.00 36.82 2.71
463 464 5.687166 TGGAAATCCTACGACCTAAATGT 57.313 39.130 0.44 0.00 36.82 2.71
464 465 6.995511 TTTGGAAATCCTACGACCTAAATG 57.004 37.500 0.44 0.00 36.82 2.32
465 466 6.093082 CGTTTTGGAAATCCTACGACCTAAAT 59.907 38.462 13.35 0.00 37.82 1.40
466 467 5.409214 CGTTTTGGAAATCCTACGACCTAAA 59.591 40.000 13.35 0.00 37.82 1.85
467 468 4.931002 CGTTTTGGAAATCCTACGACCTAA 59.069 41.667 13.35 0.00 37.82 2.69
468 469 4.497300 CGTTTTGGAAATCCTACGACCTA 58.503 43.478 13.35 0.00 37.82 3.08
469 470 3.332034 CGTTTTGGAAATCCTACGACCT 58.668 45.455 13.35 0.00 37.82 3.85
470 471 2.159612 GCGTTTTGGAAATCCTACGACC 60.160 50.000 19.17 0.00 37.82 4.79
471 472 2.473376 CGCGTTTTGGAAATCCTACGAC 60.473 50.000 19.17 12.42 37.82 4.34
472 473 1.727880 CGCGTTTTGGAAATCCTACGA 59.272 47.619 19.17 0.00 37.82 3.43
473 474 1.201987 CCGCGTTTTGGAAATCCTACG 60.202 52.381 4.92 13.93 38.26 3.51
474 475 2.078392 TCCGCGTTTTGGAAATCCTAC 58.922 47.619 4.92 0.00 36.82 3.18
475 476 2.476126 TCCGCGTTTTGGAAATCCTA 57.524 45.000 4.92 0.00 36.82 2.94
476 477 1.611519 TTCCGCGTTTTGGAAATCCT 58.388 45.000 4.92 0.00 42.37 3.24
481 482 1.813786 CCCTATTTCCGCGTTTTGGAA 59.186 47.619 4.92 0.00 43.59 3.53
482 483 1.003349 TCCCTATTTCCGCGTTTTGGA 59.997 47.619 4.92 0.00 0.00 3.53
483 484 1.455248 TCCCTATTTCCGCGTTTTGG 58.545 50.000 4.92 0.00 0.00 3.28
484 485 3.562567 TTTCCCTATTTCCGCGTTTTG 57.437 42.857 4.92 0.00 0.00 2.44
485 486 3.318557 TGTTTTCCCTATTTCCGCGTTTT 59.681 39.130 4.92 0.00 0.00 2.43
486 487 2.885894 TGTTTTCCCTATTTCCGCGTTT 59.114 40.909 4.92 0.00 0.00 3.60
487 488 2.506444 TGTTTTCCCTATTTCCGCGTT 58.494 42.857 4.92 0.00 0.00 4.84
488 489 2.188062 TGTTTTCCCTATTTCCGCGT 57.812 45.000 4.92 0.00 0.00 6.01
489 490 2.223479 CCATGTTTTCCCTATTTCCGCG 60.223 50.000 0.00 0.00 0.00 6.46
490 491 2.100749 CCCATGTTTTCCCTATTTCCGC 59.899 50.000 0.00 0.00 0.00 5.54
491 492 3.626930 TCCCATGTTTTCCCTATTTCCG 58.373 45.455 0.00 0.00 0.00 4.30
492 493 7.066781 TCTAATCCCATGTTTTCCCTATTTCC 58.933 38.462 0.00 0.00 0.00 3.13
493 494 7.780271 ACTCTAATCCCATGTTTTCCCTATTTC 59.220 37.037 0.00 0.00 0.00 2.17
494 495 7.561356 CACTCTAATCCCATGTTTTCCCTATTT 59.439 37.037 0.00 0.00 0.00 1.40
495 496 7.062957 CACTCTAATCCCATGTTTTCCCTATT 58.937 38.462 0.00 0.00 0.00 1.73
496 497 6.410853 CCACTCTAATCCCATGTTTTCCCTAT 60.411 42.308 0.00 0.00 0.00 2.57
497 498 5.104109 CCACTCTAATCCCATGTTTTCCCTA 60.104 44.000 0.00 0.00 0.00 3.53
498 499 4.325344 CCACTCTAATCCCATGTTTTCCCT 60.325 45.833 0.00 0.00 0.00 4.20
499 500 3.954258 CCACTCTAATCCCATGTTTTCCC 59.046 47.826 0.00 0.00 0.00 3.97
500 501 3.381590 GCCACTCTAATCCCATGTTTTCC 59.618 47.826 0.00 0.00 0.00 3.13
501 502 4.016444 TGCCACTCTAATCCCATGTTTTC 58.984 43.478 0.00 0.00 0.00 2.29
502 503 4.046286 TGCCACTCTAATCCCATGTTTT 57.954 40.909 0.00 0.00 0.00 2.43
503 504 3.737559 TGCCACTCTAATCCCATGTTT 57.262 42.857 0.00 0.00 0.00 2.83
504 505 3.053395 ACATGCCACTCTAATCCCATGTT 60.053 43.478 0.00 0.00 39.97 2.71
505 506 2.511218 ACATGCCACTCTAATCCCATGT 59.489 45.455 0.00 0.00 38.62 3.21
506 507 3.144506 GACATGCCACTCTAATCCCATG 58.855 50.000 0.00 0.00 36.90 3.66
507 508 2.779430 TGACATGCCACTCTAATCCCAT 59.221 45.455 0.00 0.00 0.00 4.00
508 509 2.195727 TGACATGCCACTCTAATCCCA 58.804 47.619 0.00 0.00 0.00 4.37
509 510 3.072184 AGATGACATGCCACTCTAATCCC 59.928 47.826 0.00 0.00 0.00 3.85
510 511 4.348863 AGATGACATGCCACTCTAATCC 57.651 45.455 0.00 0.00 0.00 3.01
511 512 5.363101 TCAAGATGACATGCCACTCTAATC 58.637 41.667 0.00 0.00 0.00 1.75
512 513 5.363562 TCAAGATGACATGCCACTCTAAT 57.636 39.130 0.00 0.00 0.00 1.73
513 514 4.824479 TCAAGATGACATGCCACTCTAA 57.176 40.909 0.00 0.00 0.00 2.10
514 515 4.824479 TTCAAGATGACATGCCACTCTA 57.176 40.909 0.00 0.00 0.00 2.43
515 516 3.708403 TTCAAGATGACATGCCACTCT 57.292 42.857 0.00 0.00 0.00 3.24
516 517 3.314635 GGATTCAAGATGACATGCCACTC 59.685 47.826 0.00 0.00 0.00 3.51
517 518 3.285484 GGATTCAAGATGACATGCCACT 58.715 45.455 0.00 0.00 0.00 4.00
518 519 3.018856 TGGATTCAAGATGACATGCCAC 58.981 45.455 0.00 0.00 0.00 5.01
519 520 3.369242 TGGATTCAAGATGACATGCCA 57.631 42.857 0.00 0.00 0.00 4.92
520 521 3.444742 TGTTGGATTCAAGATGACATGCC 59.555 43.478 0.00 0.00 32.92 4.40
521 522 4.439700 CCTGTTGGATTCAAGATGACATGC 60.440 45.833 0.00 0.00 32.92 4.06
522 523 4.945543 TCCTGTTGGATTCAAGATGACATG 59.054 41.667 0.00 0.00 37.46 3.21
523 524 5.183530 TCCTGTTGGATTCAAGATGACAT 57.816 39.130 0.00 0.00 37.46 3.06
524 525 4.639078 TCCTGTTGGATTCAAGATGACA 57.361 40.909 0.00 0.00 37.46 3.58
537 538 5.473162 TCAAACACTCATACAATCCTGTTGG 59.527 40.000 0.00 0.00 36.96 3.77
538 539 6.558771 TCAAACACTCATACAATCCTGTTG 57.441 37.500 0.00 0.00 36.96 3.33
539 540 7.765695 AATCAAACACTCATACAATCCTGTT 57.234 32.000 0.00 0.00 36.96 3.16
540 541 7.765695 AAATCAAACACTCATACAATCCTGT 57.234 32.000 0.00 0.00 39.75 4.00
541 542 7.062605 GCAAAATCAAACACTCATACAATCCTG 59.937 37.037 0.00 0.00 0.00 3.86
542 543 7.092716 GCAAAATCAAACACTCATACAATCCT 58.907 34.615 0.00 0.00 0.00 3.24
543 544 6.867816 TGCAAAATCAAACACTCATACAATCC 59.132 34.615 0.00 0.00 0.00 3.01
544 545 7.872163 TGCAAAATCAAACACTCATACAATC 57.128 32.000 0.00 0.00 0.00 2.67
545 546 9.577110 CTATGCAAAATCAAACACTCATACAAT 57.423 29.630 0.00 0.00 0.00 2.71
546 547 8.791675 TCTATGCAAAATCAAACACTCATACAA 58.208 29.630 0.00 0.00 0.00 2.41
547 548 8.334263 TCTATGCAAAATCAAACACTCATACA 57.666 30.769 0.00 0.00 0.00 2.29
548 549 9.624697 TTTCTATGCAAAATCAAACACTCATAC 57.375 29.630 0.00 0.00 0.00 2.39
550 551 9.545105 TTTTTCTATGCAAAATCAAACACTCAT 57.455 25.926 0.00 0.00 0.00 2.90
551 552 8.939201 TTTTTCTATGCAAAATCAAACACTCA 57.061 26.923 0.00 0.00 0.00 3.41
574 575 9.147732 ACCTCTTTGAAAGAATCCTACATTTTT 57.852 29.630 9.15 0.00 37.02 1.94
575 576 8.712228 ACCTCTTTGAAAGAATCCTACATTTT 57.288 30.769 9.15 0.00 37.02 1.82
576 577 8.712228 AACCTCTTTGAAAGAATCCTACATTT 57.288 30.769 9.15 0.00 37.02 2.32
577 578 8.579863 CAAACCTCTTTGAAAGAATCCTACATT 58.420 33.333 9.15 0.00 39.43 2.71
578 579 7.944554 TCAAACCTCTTTGAAAGAATCCTACAT 59.055 33.333 9.15 0.00 42.34 2.29
579 580 7.287061 TCAAACCTCTTTGAAAGAATCCTACA 58.713 34.615 9.15 0.00 42.34 2.74
580 581 7.445707 ACTCAAACCTCTTTGAAAGAATCCTAC 59.554 37.037 9.15 0.00 44.18 3.18
581 582 7.445402 CACTCAAACCTCTTTGAAAGAATCCTA 59.555 37.037 9.15 0.00 44.18 2.94
582 583 6.264067 CACTCAAACCTCTTTGAAAGAATCCT 59.736 38.462 9.15 0.00 44.18 3.24
583 584 6.442112 CACTCAAACCTCTTTGAAAGAATCC 58.558 40.000 9.15 0.00 44.18 3.01
584 585 6.263168 TCCACTCAAACCTCTTTGAAAGAATC 59.737 38.462 9.15 0.00 44.18 2.52
585 586 6.129179 TCCACTCAAACCTCTTTGAAAGAAT 58.871 36.000 9.15 0.00 44.18 2.40
586 587 5.505780 TCCACTCAAACCTCTTTGAAAGAA 58.494 37.500 9.15 0.00 44.18 2.52
587 588 5.110814 TCCACTCAAACCTCTTTGAAAGA 57.889 39.130 7.49 7.49 44.18 2.52
588 589 5.278660 CCATCCACTCAAACCTCTTTGAAAG 60.279 44.000 0.00 0.00 44.18 2.62
589 590 4.584325 CCATCCACTCAAACCTCTTTGAAA 59.416 41.667 0.00 0.00 44.18 2.69
590 591 4.141274 TCCATCCACTCAAACCTCTTTGAA 60.141 41.667 0.00 0.00 44.18 2.69
591 592 3.394274 TCCATCCACTCAAACCTCTTTGA 59.606 43.478 0.00 0.00 42.93 2.69
592 593 3.754965 TCCATCCACTCAAACCTCTTTG 58.245 45.455 0.00 0.00 38.56 2.77
593 594 4.453480 TTCCATCCACTCAAACCTCTTT 57.547 40.909 0.00 0.00 0.00 2.52
594 595 4.453480 TTTCCATCCACTCAAACCTCTT 57.547 40.909 0.00 0.00 0.00 2.85
595 596 4.664688 ATTTCCATCCACTCAAACCTCT 57.335 40.909 0.00 0.00 0.00 3.69
596 597 5.728637 AAATTTCCATCCACTCAAACCTC 57.271 39.130 0.00 0.00 0.00 3.85
597 598 6.099557 TGAAAAATTTCCATCCACTCAAACCT 59.900 34.615 3.60 0.00 36.36 3.50
598 599 6.287525 TGAAAAATTTCCATCCACTCAAACC 58.712 36.000 3.60 0.00 36.36 3.27
599 600 7.784633 TTGAAAAATTTCCATCCACTCAAAC 57.215 32.000 3.60 0.00 36.36 2.93
600 601 8.209584 TCATTGAAAAATTTCCATCCACTCAAA 58.790 29.630 3.60 0.00 36.36 2.69
601 602 7.733969 TCATTGAAAAATTTCCATCCACTCAA 58.266 30.769 3.60 0.00 36.36 3.02
602 603 7.300556 TCATTGAAAAATTTCCATCCACTCA 57.699 32.000 3.60 0.00 36.36 3.41
603 604 8.606040 TTTCATTGAAAAATTTCCATCCACTC 57.394 30.769 9.36 0.00 36.36 3.51
604 605 9.223099 GATTTCATTGAAAAATTTCCATCCACT 57.777 29.630 15.34 0.00 35.11 4.00
605 606 9.223099 AGATTTCATTGAAAAATTTCCATCCAC 57.777 29.630 15.34 0.00 35.11 4.02
610 611 9.206870 GCACTAGATTTCATTGAAAAATTTCCA 57.793 29.630 15.34 0.00 35.11 3.53
611 612 9.206870 TGCACTAGATTTCATTGAAAAATTTCC 57.793 29.630 15.34 3.75 35.11 3.13
616 617 9.761504 TCATTTGCACTAGATTTCATTGAAAAA 57.238 25.926 15.34 3.27 35.11 1.94
617 618 9.761504 TTCATTTGCACTAGATTTCATTGAAAA 57.238 25.926 15.34 0.00 35.11 2.29
618 619 9.932207 ATTCATTTGCACTAGATTTCATTGAAA 57.068 25.926 13.88 13.88 35.94 2.69
619 620 9.577110 GATTCATTTGCACTAGATTTCATTGAA 57.423 29.630 0.00 0.00 0.00 2.69
620 621 8.963725 AGATTCATTTGCACTAGATTTCATTGA 58.036 29.630 0.00 0.00 0.00 2.57
621 622 9.582431 AAGATTCATTTGCACTAGATTTCATTG 57.418 29.630 0.00 0.00 0.00 2.82
674 675 2.220133 CGTGGGTTGTTTGACTCGTAAG 59.780 50.000 0.00 0.00 0.00 2.34
675 676 2.203401 CGTGGGTTGTTTGACTCGTAA 58.797 47.619 0.00 0.00 0.00 3.18
676 677 1.136695 ACGTGGGTTGTTTGACTCGTA 59.863 47.619 0.00 0.00 0.00 3.43
677 678 0.108041 ACGTGGGTTGTTTGACTCGT 60.108 50.000 0.00 0.00 0.00 4.18
678 679 1.855513 TACGTGGGTTGTTTGACTCG 58.144 50.000 0.00 0.00 0.00 4.18
679 680 3.460103 TCTTACGTGGGTTGTTTGACTC 58.540 45.455 0.00 0.00 0.00 3.36
680 681 3.547054 TCTTACGTGGGTTGTTTGACT 57.453 42.857 0.00 0.00 0.00 3.41
681 682 4.619437 TTTCTTACGTGGGTTGTTTGAC 57.381 40.909 0.00 0.00 0.00 3.18
682 683 4.701171 ACTTTTCTTACGTGGGTTGTTTGA 59.299 37.500 0.00 0.00 0.00 2.69
683 684 4.989044 ACTTTTCTTACGTGGGTTGTTTG 58.011 39.130 0.00 0.00 0.00 2.93
684 685 5.416639 AGAACTTTTCTTACGTGGGTTGTTT 59.583 36.000 0.00 0.00 36.36 2.83
685 686 4.945543 AGAACTTTTCTTACGTGGGTTGTT 59.054 37.500 0.00 0.00 36.36 2.83
686 687 4.520179 AGAACTTTTCTTACGTGGGTTGT 58.480 39.130 0.00 0.00 36.36 3.32
737 738 8.749354 GGGCTTCTTTTATTTAAAGGATTCTCA 58.251 33.333 0.00 0.00 42.88 3.27
738 739 8.972127 AGGGCTTCTTTTATTTAAAGGATTCTC 58.028 33.333 0.00 0.00 42.88 2.87
739 740 8.901472 AGGGCTTCTTTTATTTAAAGGATTCT 57.099 30.769 0.00 0.00 42.88 2.40
753 754 8.585881 GGAGAAAAACTTATAAGGGCTTCTTTT 58.414 33.333 16.73 9.70 36.93 2.27
754 755 7.728532 TGGAGAAAAACTTATAAGGGCTTCTTT 59.271 33.333 16.73 4.36 36.93 2.52
755 756 7.238710 TGGAGAAAAACTTATAAGGGCTTCTT 58.761 34.615 16.73 0.00 39.40 2.52
756 757 6.790319 TGGAGAAAAACTTATAAGGGCTTCT 58.210 36.000 16.73 17.47 0.00 2.85
757 758 7.339466 TGATGGAGAAAAACTTATAAGGGCTTC 59.661 37.037 16.73 13.76 0.00 3.86
758 759 7.182060 TGATGGAGAAAAACTTATAAGGGCTT 58.818 34.615 16.73 6.23 0.00 4.35
759 760 6.731467 TGATGGAGAAAAACTTATAAGGGCT 58.269 36.000 16.73 6.08 0.00 5.19
760 761 7.339466 TCTTGATGGAGAAAAACTTATAAGGGC 59.661 37.037 16.73 1.64 0.00 5.19
761 762 8.807948 TCTTGATGGAGAAAAACTTATAAGGG 57.192 34.615 16.73 0.00 0.00 3.95
777 778 6.157471 TCTCTTCTCCATTTGATCTTGATGGA 59.843 38.462 18.12 18.12 45.21 3.41
794 795 8.553459 TGTCCTAAAAACATTGATCTCTTCTC 57.447 34.615 0.00 0.00 0.00 2.87
812 813 5.487488 ACATTGGTCACCTCTATTGTCCTAA 59.513 40.000 0.00 0.00 0.00 2.69
824 825 3.073798 TGAACCATGTACATTGGTCACCT 59.926 43.478 20.61 10.16 34.39 4.00
827 836 6.945435 AGTTAATGAACCATGTACATTGGTCA 59.055 34.615 25.04 25.04 36.08 4.02
866 881 0.906756 TGCACTGAGGAGCCTAGCTT 60.907 55.000 0.00 0.00 39.88 3.74
881 896 4.787598 CACAAGAAATACTCCACTTGCAC 58.212 43.478 0.00 0.00 42.00 4.57
931 968 2.363172 GGTGGGAGGGAGAGTGAGC 61.363 68.421 0.00 0.00 0.00 4.26
932 969 1.079256 TGGTGGGAGGGAGAGTGAG 59.921 63.158 0.00 0.00 0.00 3.51
933 970 1.229209 GTGGTGGGAGGGAGAGTGA 60.229 63.158 0.00 0.00 0.00 3.41
934 971 1.536418 TGTGGTGGGAGGGAGAGTG 60.536 63.158 0.00 0.00 0.00 3.51
935 972 1.536662 GTGTGGTGGGAGGGAGAGT 60.537 63.158 0.00 0.00 0.00 3.24
936 973 2.650116 CGTGTGGTGGGAGGGAGAG 61.650 68.421 0.00 0.00 0.00 3.20
937 974 2.603473 CGTGTGGTGGGAGGGAGA 60.603 66.667 0.00 0.00 0.00 3.71
941 978 3.476031 AAGTGCGTGTGGTGGGAGG 62.476 63.158 0.00 0.00 0.00 4.30
945 982 3.345808 CGGAAGTGCGTGTGGTGG 61.346 66.667 0.00 0.00 0.00 4.61
1070 1107 2.435693 GGGTCCATCTCCACCTCCG 61.436 68.421 0.00 0.00 32.69 4.63
1073 1110 3.083997 GCGGGTCCATCTCCACCT 61.084 66.667 0.00 0.00 32.69 4.00
1425 1462 2.358003 AGGAGCAGCGTCTTGTGC 60.358 61.111 0.00 0.00 40.17 4.57
1743 1780 3.374745 CTTTCCATTTATGCGGATGTGC 58.625 45.455 0.00 0.00 0.00 4.57
1749 1786 1.775385 ACCCCTTTCCATTTATGCGG 58.225 50.000 0.00 0.00 0.00 5.69
1783 1821 6.000219 CCATTCTTGGATCGTATGGAGAAAT 59.000 40.000 0.00 0.00 46.92 2.17
1808 1846 8.740123 TTTATAATGATGTACAACAACCCGAT 57.260 30.769 10.08 2.72 0.00 4.18
1809 1847 8.616942 CATTTATAATGATGTACAACAACCCGA 58.383 33.333 10.08 0.00 0.00 5.14
1810 1848 7.860373 CCATTTATAATGATGTACAACAACCCG 59.140 37.037 10.08 0.00 0.00 5.28
1811 1849 8.141268 CCCATTTATAATGATGTACAACAACCC 58.859 37.037 10.08 0.00 0.00 4.11
1812 1850 8.908903 TCCCATTTATAATGATGTACAACAACC 58.091 33.333 10.08 0.00 0.00 3.77
1813 1851 9.730420 GTCCCATTTATAATGATGTACAACAAC 57.270 33.333 10.08 0.00 0.00 3.32
1814 1852 8.616942 CGTCCCATTTATAATGATGTACAACAA 58.383 33.333 10.08 0.00 0.00 2.83
1815 1853 7.771361 ACGTCCCATTTATAATGATGTACAACA 59.229 33.333 8.38 8.38 0.00 3.33
1816 1854 8.067784 CACGTCCCATTTATAATGATGTACAAC 58.932 37.037 0.00 0.00 0.00 3.32
1817 1855 7.254966 GCACGTCCCATTTATAATGATGTACAA 60.255 37.037 0.00 0.00 0.00 2.41
1818 1856 6.203915 GCACGTCCCATTTATAATGATGTACA 59.796 38.462 0.00 0.00 0.00 2.90
1819 1857 6.203915 TGCACGTCCCATTTATAATGATGTAC 59.796 38.462 1.11 0.00 0.00 2.90
1820 1858 6.292150 TGCACGTCCCATTTATAATGATGTA 58.708 36.000 1.11 0.00 0.00 2.29
1821 1859 5.129634 TGCACGTCCCATTTATAATGATGT 58.870 37.500 1.11 0.00 0.00 3.06
1822 1860 5.687770 TGCACGTCCCATTTATAATGATG 57.312 39.130 1.11 0.00 0.00 3.07
1823 1861 6.707440 TTTGCACGTCCCATTTATAATGAT 57.293 33.333 1.11 0.00 0.00 2.45
1824 1862 6.707440 ATTTGCACGTCCCATTTATAATGA 57.293 33.333 1.11 0.00 0.00 2.57
1825 1863 7.706179 AGAAATTTGCACGTCCCATTTATAATG 59.294 33.333 0.00 0.00 0.00 1.90
1826 1864 7.706179 CAGAAATTTGCACGTCCCATTTATAAT 59.294 33.333 0.00 0.00 0.00 1.28
1827 1865 7.032580 CAGAAATTTGCACGTCCCATTTATAA 58.967 34.615 0.00 0.00 0.00 0.98
1828 1866 6.375736 TCAGAAATTTGCACGTCCCATTTATA 59.624 34.615 0.00 0.00 0.00 0.98
1829 1867 5.184864 TCAGAAATTTGCACGTCCCATTTAT 59.815 36.000 0.00 0.00 0.00 1.40
1830 1868 4.520874 TCAGAAATTTGCACGTCCCATTTA 59.479 37.500 0.00 0.00 0.00 1.40
1831 1869 3.320541 TCAGAAATTTGCACGTCCCATTT 59.679 39.130 0.00 0.00 0.00 2.32
1832 1870 2.890311 TCAGAAATTTGCACGTCCCATT 59.110 40.909 0.00 0.00 0.00 3.16
1833 1871 2.513753 TCAGAAATTTGCACGTCCCAT 58.486 42.857 0.00 0.00 0.00 4.00
1834 1872 1.974265 TCAGAAATTTGCACGTCCCA 58.026 45.000 0.00 0.00 0.00 4.37
1835 1873 3.575965 AATCAGAAATTTGCACGTCCC 57.424 42.857 0.00 0.00 0.00 4.46
1836 1874 5.036737 CCATAATCAGAAATTTGCACGTCC 58.963 41.667 0.00 0.00 0.00 4.79
1837 1875 5.036737 CCCATAATCAGAAATTTGCACGTC 58.963 41.667 0.00 0.00 0.00 4.34
2391 2438 3.136123 TACGCGAGGACCCGGAAG 61.136 66.667 15.93 0.00 0.00 3.46
2572 2622 4.654915 TCAAGCCTGAAATGTCTCATGAA 58.345 39.130 0.00 0.00 0.00 2.57
2693 2744 8.788325 AGAACAGAACAACAAATATACTACCC 57.212 34.615 0.00 0.00 0.00 3.69
2702 2753 6.449698 CCATGCTAAGAACAGAACAACAAAT 58.550 36.000 0.00 0.00 0.00 2.32
2832 2891 8.239998 AGATTCAACAATAAAGCAAGCTAGAAC 58.760 33.333 0.00 0.00 0.00 3.01
2904 2982 6.808008 TTTTTGTTGCCAATCTCACAAAAA 57.192 29.167 14.64 14.64 41.58 1.94
2954 3032 4.421131 TGGTGGTATAAGGTTGCCAAATT 58.579 39.130 0.00 0.00 32.26 1.82
3145 3224 9.839817 TCAATGGACGAATTATGTAGGAAATTA 57.160 29.630 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.