Multiple sequence alignment - TraesCS7D01G468300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G468300 chr7D 100.000 3700 0 0 1 3700 581636757 581640456 0.000000e+00 6796
1 TraesCS7D01G468300 chr7D 97.137 1048 30 0 695 1742 581665124 581666171 0.000000e+00 1770
2 TraesCS7D01G468300 chr7D 96.501 1029 26 3 1746 2766 581666210 581667236 0.000000e+00 1692
3 TraesCS7D01G468300 chr7D 94.655 1029 45 3 1746 2766 581600372 581601398 0.000000e+00 1587
4 TraesCS7D01G468300 chr7D 94.647 822 41 3 695 1516 581564801 581565619 0.000000e+00 1271
5 TraesCS7D01G468300 chr7D 89.911 902 77 3 695 1582 581420874 581421775 0.000000e+00 1149
6 TraesCS7D01G468300 chr7D 86.892 946 67 25 2763 3697 6221914 6221015 0.000000e+00 1007
7 TraesCS7D01G468300 chr7D 96.078 408 16 0 278 685 581563945 581564352 0.000000e+00 665
8 TraesCS7D01G468300 chr7D 83.279 610 89 11 1069 1667 582042985 582043592 1.940000e-152 549
9 TraesCS7D01G468300 chr7D 95.131 267 12 1 2 267 58572121 58571855 1.590000e-113 420
10 TraesCS7D01G468300 chr7D 95.131 267 12 1 2 267 227274170 227273904 1.590000e-113 420
11 TraesCS7D01G468300 chr7D 95.131 267 12 1 2 267 311022686 311022952 1.590000e-113 420
12 TraesCS7D01G468300 chr7D 94.694 245 13 0 289 533 562628007 562627763 7.500000e-102 381
13 TraesCS7D01G468300 chr7D 92.245 245 18 1 441 685 581420187 581420430 2.740000e-91 346
14 TraesCS7D01G468300 chr7A 92.906 1029 57 4 1746 2766 673311066 673312086 0.000000e+00 1482
15 TraesCS7D01G468300 chr7A 90.755 941 55 13 2765 3697 540325241 540326157 0.000000e+00 1227
16 TraesCS7D01G468300 chr7A 93.071 534 35 1 1118 1649 673309743 673310276 0.000000e+00 780
17 TraesCS7D01G468300 chr7A 93.842 406 25 0 278 683 673308153 673308558 2.440000e-171 612
18 TraesCS7D01G468300 chr7A 82.792 616 100 6 1066 1679 648270528 648269917 2.510000e-151 545
19 TraesCS7D01G468300 chr7A 90.617 373 32 1 289 661 648213441 648213072 3.320000e-135 492
20 TraesCS7D01G468300 chr7A 97.059 204 6 0 850 1053 673309537 673309740 9.840000e-91 344
21 TraesCS7D01G468300 chr7A 78.763 372 71 5 1746 2113 648211021 648210654 3.690000e-60 243
22 TraesCS7D01G468300 chr7A 87.500 208 22 3 478 685 648271692 648271489 1.720000e-58 237
23 TraesCS7D01G468300 chr7A 93.478 138 9 0 695 832 673309008 673309145 4.840000e-49 206
24 TraesCS7D01G468300 chr4B 92.743 937 62 3 2766 3700 522243858 522242926 0.000000e+00 1349
25 TraesCS7D01G468300 chr4B 91.898 938 66 7 2767 3700 68365569 68366500 0.000000e+00 1303
26 TraesCS7D01G468300 chr4B 90.629 843 65 12 2863 3697 623381302 623380466 0.000000e+00 1107
27 TraesCS7D01G468300 chr7B 91.043 1016 60 21 1746 2752 649281083 649282076 0.000000e+00 1343
28 TraesCS7D01G468300 chr7B 90.011 941 73 14 2766 3700 637919200 637920125 0.000000e+00 1197
29 TraesCS7D01G468300 chr7B 87.970 798 70 12 1746 2535 649449135 649449914 0.000000e+00 918
30 TraesCS7D01G468300 chr7B 87.970 798 69 13 1746 2535 649458700 649459478 0.000000e+00 917
31 TraesCS7D01G468300 chr7B 87.097 713 70 11 991 1683 649448342 649449052 0.000000e+00 787
32 TraesCS7D01G468300 chr7B 86.779 711 76 8 991 1683 649457907 649458617 0.000000e+00 776
33 TraesCS7D01G468300 chr7B 92.750 400 28 1 286 685 649128208 649128606 8.910000e-161 577
34 TraesCS7D01G468300 chr7B 92.564 390 28 1 296 685 649250286 649250674 3.230000e-155 558
35 TraesCS7D01G468300 chr7B 93.927 247 12 2 1498 1744 649280803 649281046 1.620000e-98 370
36 TraesCS7D01G468300 chr7B 95.522 201 9 0 286 486 649250074 649250274 4.610000e-84 322
37 TraesCS7D01G468300 chr7B 90.732 205 7 2 865 1057 649258432 649258636 2.830000e-66 263
38 TraesCS7D01G468300 chr7B 91.860 172 12 2 695 865 649129051 649129221 4.780000e-59 239
39 TraesCS7D01G468300 chr7B 88.442 199 15 5 865 1057 649152538 649152734 2.220000e-57 233
40 TraesCS7D01G468300 chr4A 92.751 938 54 8 2767 3697 528652403 528653333 0.000000e+00 1343
41 TraesCS7D01G468300 chr4A 92.431 938 56 10 2767 3697 528611938 528612867 0.000000e+00 1325
42 TraesCS7D01G468300 chr1A 93.627 863 49 3 2836 3697 555266306 555265449 0.000000e+00 1284
43 TraesCS7D01G468300 chr1A 94.737 266 14 0 2 267 282411007 282411272 7.390000e-112 414
44 TraesCS7D01G468300 chr1A 94.757 267 12 2 2 267 397950726 397950991 7.390000e-112 414
45 TraesCS7D01G468300 chrUn 93.103 870 43 7 2846 3700 154774143 154773276 0.000000e+00 1258
46 TraesCS7D01G468300 chrUn 88.095 798 69 12 1746 2535 286626528 286627307 0.000000e+00 924
47 TraesCS7D01G468300 chrUn 87.097 713 70 11 991 1683 286625735 286626445 0.000000e+00 787
48 TraesCS7D01G468300 chrUn 92.250 400 30 1 286 685 309506209 309506607 1.930000e-157 566
49 TraesCS7D01G468300 chrUn 92.250 400 30 1 286 685 450110712 450111110 1.930000e-157 566
50 TraesCS7D01G468300 chrUn 92.442 172 11 2 695 865 309507052 309507222 1.030000e-60 244
51 TraesCS7D01G468300 chrUn 88.945 199 14 5 865 1057 330879884 330879688 4.780000e-59 239
52 TraesCS7D01G468300 chrUn 91.473 129 9 2 695 822 450111555 450111682 3.800000e-40 176
53 TraesCS7D01G468300 chr2B 90.618 938 64 6 2765 3700 285364473 285365388 0.000000e+00 1223
54 TraesCS7D01G468300 chr3D 92.918 819 42 10 2885 3700 26606286 26605481 0.000000e+00 1177
55 TraesCS7D01G468300 chr3D 95.506 267 10 2 2 267 113137301 113137036 3.420000e-115 425
56 TraesCS7D01G468300 chr5A 89.681 940 71 10 2759 3697 507152047 507151133 0.000000e+00 1175
57 TraesCS7D01G468300 chr5A 95.113 266 13 0 2 267 79820779 79820514 1.590000e-113 420
58 TraesCS7D01G468300 chr1D 100.000 267 0 0 1 267 447646925 447646659 9.230000e-136 494
59 TraesCS7D01G468300 chr1D 95.113 266 13 0 2 267 293498240 293497975 1.590000e-113 420
60 TraesCS7D01G468300 chr5D 95.113 266 13 0 2 267 120372051 120372316 1.590000e-113 420


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G468300 chr7D 581636757 581640456 3699 False 6796.0 6796 100.0000 1 3700 1 chr7D.!!$F3 3699
1 TraesCS7D01G468300 chr7D 581665124 581667236 2112 False 1731.0 1770 96.8190 695 2766 2 chr7D.!!$F7 2071
2 TraesCS7D01G468300 chr7D 581600372 581601398 1026 False 1587.0 1587 94.6550 1746 2766 1 chr7D.!!$F2 1020
3 TraesCS7D01G468300 chr7D 6221015 6221914 899 True 1007.0 1007 86.8920 2763 3697 1 chr7D.!!$R1 934
4 TraesCS7D01G468300 chr7D 581563945 581565619 1674 False 968.0 1271 95.3625 278 1516 2 chr7D.!!$F6 1238
5 TraesCS7D01G468300 chr7D 581420187 581421775 1588 False 747.5 1149 91.0780 441 1582 2 chr7D.!!$F5 1141
6 TraesCS7D01G468300 chr7D 582042985 582043592 607 False 549.0 549 83.2790 1069 1667 1 chr7D.!!$F4 598
7 TraesCS7D01G468300 chr7A 540325241 540326157 916 False 1227.0 1227 90.7550 2765 3697 1 chr7A.!!$F1 932
8 TraesCS7D01G468300 chr7A 673308153 673312086 3933 False 684.8 1482 94.0712 278 2766 5 chr7A.!!$F2 2488
9 TraesCS7D01G468300 chr7A 648269917 648271692 1775 True 391.0 545 85.1460 478 1679 2 chr7A.!!$R2 1201
10 TraesCS7D01G468300 chr7A 648210654 648213441 2787 True 367.5 492 84.6900 289 2113 2 chr7A.!!$R1 1824
11 TraesCS7D01G468300 chr4B 522242926 522243858 932 True 1349.0 1349 92.7430 2766 3700 1 chr4B.!!$R1 934
12 TraesCS7D01G468300 chr4B 68365569 68366500 931 False 1303.0 1303 91.8980 2767 3700 1 chr4B.!!$F1 933
13 TraesCS7D01G468300 chr4B 623380466 623381302 836 True 1107.0 1107 90.6290 2863 3697 1 chr4B.!!$R2 834
14 TraesCS7D01G468300 chr7B 637919200 637920125 925 False 1197.0 1197 90.0110 2766 3700 1 chr7B.!!$F1 934
15 TraesCS7D01G468300 chr7B 649280803 649282076 1273 False 856.5 1343 92.4850 1498 2752 2 chr7B.!!$F6 1254
16 TraesCS7D01G468300 chr7B 649448342 649449914 1572 False 852.5 918 87.5335 991 2535 2 chr7B.!!$F7 1544
17 TraesCS7D01G468300 chr7B 649457907 649459478 1571 False 846.5 917 87.3745 991 2535 2 chr7B.!!$F8 1544
18 TraesCS7D01G468300 chr7B 649250074 649250674 600 False 440.0 558 94.0430 286 685 2 chr7B.!!$F5 399
19 TraesCS7D01G468300 chr7B 649128208 649129221 1013 False 408.0 577 92.3050 286 865 2 chr7B.!!$F4 579
20 TraesCS7D01G468300 chr4A 528652403 528653333 930 False 1343.0 1343 92.7510 2767 3697 1 chr4A.!!$F2 930
21 TraesCS7D01G468300 chr4A 528611938 528612867 929 False 1325.0 1325 92.4310 2767 3697 1 chr4A.!!$F1 930
22 TraesCS7D01G468300 chr1A 555265449 555266306 857 True 1284.0 1284 93.6270 2836 3697 1 chr1A.!!$R1 861
23 TraesCS7D01G468300 chrUn 154773276 154774143 867 True 1258.0 1258 93.1030 2846 3700 1 chrUn.!!$R1 854
24 TraesCS7D01G468300 chrUn 286625735 286627307 1572 False 855.5 924 87.5960 991 2535 2 chrUn.!!$F1 1544
25 TraesCS7D01G468300 chrUn 309506209 309507222 1013 False 405.0 566 92.3460 286 865 2 chrUn.!!$F2 579
26 TraesCS7D01G468300 chrUn 450110712 450111682 970 False 371.0 566 91.8615 286 822 2 chrUn.!!$F3 536
27 TraesCS7D01G468300 chr2B 285364473 285365388 915 False 1223.0 1223 90.6180 2765 3700 1 chr2B.!!$F1 935
28 TraesCS7D01G468300 chr3D 26605481 26606286 805 True 1177.0 1177 92.9180 2885 3700 1 chr3D.!!$R1 815
29 TraesCS7D01G468300 chr5A 507151133 507152047 914 True 1175.0 1175 89.6810 2759 3697 1 chr5A.!!$R2 938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.037447 TGAATGATCCGGGCACACAA 59.963 50.0 0.00 0.0 0.0 3.33 F
202 203 0.040058 TCCCCACTTAGTACAGGCGA 59.960 55.0 0.00 0.0 0.0 5.54 F
232 233 0.179000 ATAGGTTGAGAAGCGGCCAG 59.821 55.0 2.24 0.0 0.0 4.85 F
562 768 0.322975 ACTTGAGACATGCCGAAGCT 59.677 50.0 0.00 0.0 40.8 3.74 F
1279 2760 0.809385 CCGGCTTCTTCTACACTCGA 59.191 55.0 0.00 0.0 0.0 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1279 2760 0.391263 GGAACTCCGGATTGTCGCTT 60.391 55.000 3.57 0.0 0.00 4.68 R
1649 3953 0.839946 ATCCATCTCCTGGTTTCCGG 59.160 55.000 0.00 0.0 46.08 5.14 R
1928 4280 1.156736 ATTTCCACTCTTTGCGGTCG 58.843 50.000 0.00 0.0 0.00 4.79 R
2234 4597 2.348498 CGGCGGTTTCATATTGATGTCG 60.348 50.000 0.00 0.0 34.41 4.35 R
2726 5089 1.003003 TCCATCGCTTCATGAACACCA 59.997 47.619 3.38 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.808583 GTACCGACCACTTCCTGTC 57.191 57.895 0.00 0.00 0.00 3.51
22 23 2.810486 CGACCACTTCCTGTCGTTC 58.190 57.895 4.04 0.00 46.83 3.95
23 24 0.666577 CGACCACTTCCTGTCGTTCC 60.667 60.000 4.04 0.00 46.83 3.62
24 25 0.391597 GACCACTTCCTGTCGTTCCA 59.608 55.000 0.00 0.00 0.00 3.53
25 26 1.002087 GACCACTTCCTGTCGTTCCAT 59.998 52.381 0.00 0.00 0.00 3.41
26 27 1.270839 ACCACTTCCTGTCGTTCCATG 60.271 52.381 0.00 0.00 0.00 3.66
27 28 1.001974 CCACTTCCTGTCGTTCCATGA 59.998 52.381 0.00 0.00 0.00 3.07
28 29 2.549992 CCACTTCCTGTCGTTCCATGAA 60.550 50.000 0.00 0.00 0.00 2.57
29 30 3.338249 CACTTCCTGTCGTTCCATGAAT 58.662 45.455 0.00 0.00 0.00 2.57
30 31 3.125829 CACTTCCTGTCGTTCCATGAATG 59.874 47.826 0.00 0.00 0.00 2.67
31 32 3.007940 ACTTCCTGTCGTTCCATGAATGA 59.992 43.478 0.00 0.00 35.53 2.57
32 33 3.912496 TCCTGTCGTTCCATGAATGAT 57.088 42.857 0.00 0.00 39.34 2.45
33 34 3.797039 TCCTGTCGTTCCATGAATGATC 58.203 45.455 0.00 0.00 39.34 2.92
34 35 2.874701 CCTGTCGTTCCATGAATGATCC 59.125 50.000 0.00 0.00 39.34 3.36
35 36 2.541346 CTGTCGTTCCATGAATGATCCG 59.459 50.000 0.00 0.00 39.34 4.18
36 37 1.867233 GTCGTTCCATGAATGATCCGG 59.133 52.381 0.00 0.00 39.34 5.14
37 38 1.202639 TCGTTCCATGAATGATCCGGG 60.203 52.381 0.00 0.00 33.33 5.73
38 39 0.954452 GTTCCATGAATGATCCGGGC 59.046 55.000 0.00 0.00 0.00 6.13
39 40 0.550432 TTCCATGAATGATCCGGGCA 59.450 50.000 0.00 0.00 0.00 5.36
40 41 0.179020 TCCATGAATGATCCGGGCAC 60.179 55.000 0.00 0.00 0.00 5.01
41 42 0.466007 CCATGAATGATCCGGGCACA 60.466 55.000 0.00 0.00 0.00 4.57
42 43 0.664761 CATGAATGATCCGGGCACAC 59.335 55.000 0.00 0.00 0.00 3.82
43 44 0.255604 ATGAATGATCCGGGCACACA 59.744 50.000 0.00 5.25 0.00 3.72
44 45 0.037447 TGAATGATCCGGGCACACAA 59.963 50.000 0.00 0.00 0.00 3.33
45 46 1.173043 GAATGATCCGGGCACACAAA 58.827 50.000 0.00 0.00 0.00 2.83
46 47 1.543802 GAATGATCCGGGCACACAAAA 59.456 47.619 0.00 0.00 0.00 2.44
47 48 1.626686 ATGATCCGGGCACACAAAAA 58.373 45.000 0.00 0.00 0.00 1.94
48 49 0.958091 TGATCCGGGCACACAAAAAG 59.042 50.000 0.00 0.00 0.00 2.27
49 50 0.243636 GATCCGGGCACACAAAAAGG 59.756 55.000 0.00 0.00 0.00 3.11
50 51 0.178975 ATCCGGGCACACAAAAAGGA 60.179 50.000 0.00 0.00 0.00 3.36
51 52 0.178975 TCCGGGCACACAAAAAGGAT 60.179 50.000 0.00 0.00 0.00 3.24
52 53 1.074084 TCCGGGCACACAAAAAGGATA 59.926 47.619 0.00 0.00 0.00 2.59
53 54 2.099405 CCGGGCACACAAAAAGGATAT 58.901 47.619 0.00 0.00 0.00 1.63
54 55 2.495669 CCGGGCACACAAAAAGGATATT 59.504 45.455 0.00 0.00 0.00 1.28
55 56 3.056179 CCGGGCACACAAAAAGGATATTT 60.056 43.478 0.00 0.00 0.00 1.40
56 57 4.158764 CCGGGCACACAAAAAGGATATTTA 59.841 41.667 0.00 0.00 0.00 1.40
57 58 5.163457 CCGGGCACACAAAAAGGATATTTAT 60.163 40.000 0.00 0.00 0.00 1.40
58 59 6.337356 CGGGCACACAAAAAGGATATTTATT 58.663 36.000 0.00 0.00 0.00 1.40
59 60 7.416890 CCGGGCACACAAAAAGGATATTTATTA 60.417 37.037 0.00 0.00 0.00 0.98
60 61 7.647715 CGGGCACACAAAAAGGATATTTATTAG 59.352 37.037 0.00 0.00 0.00 1.73
61 62 8.691797 GGGCACACAAAAAGGATATTTATTAGA 58.308 33.333 0.00 0.00 0.00 2.10
78 79 8.927675 TTTATTAGAAGTTTTTAGAGGTGGCA 57.072 30.769 0.00 0.00 0.00 4.92
79 80 6.819397 ATTAGAAGTTTTTAGAGGTGGCAC 57.181 37.500 9.70 9.70 0.00 5.01
80 81 4.164843 AGAAGTTTTTAGAGGTGGCACA 57.835 40.909 20.82 0.00 0.00 4.57
81 82 4.729868 AGAAGTTTTTAGAGGTGGCACAT 58.270 39.130 20.82 13.44 44.52 3.21
82 83 4.520492 AGAAGTTTTTAGAGGTGGCACATG 59.480 41.667 20.82 0.00 44.52 3.21
83 84 2.558359 AGTTTTTAGAGGTGGCACATGC 59.442 45.455 20.82 7.72 44.52 4.06
84 85 2.284754 TTTTAGAGGTGGCACATGCA 57.715 45.000 20.82 0.00 44.52 3.96
85 86 2.284754 TTTAGAGGTGGCACATGCAA 57.715 45.000 20.82 5.51 44.52 4.08
86 87 2.284754 TTAGAGGTGGCACATGCAAA 57.715 45.000 20.82 3.25 44.52 3.68
87 88 2.512692 TAGAGGTGGCACATGCAAAT 57.487 45.000 20.82 0.16 44.52 2.32
88 89 1.636148 AGAGGTGGCACATGCAAATT 58.364 45.000 20.82 0.00 44.52 1.82
89 90 1.972795 AGAGGTGGCACATGCAAATTT 59.027 42.857 20.82 0.00 44.52 1.82
90 91 3.164268 AGAGGTGGCACATGCAAATTTA 58.836 40.909 20.82 0.00 44.52 1.40
91 92 3.056607 AGAGGTGGCACATGCAAATTTAC 60.057 43.478 20.82 0.00 44.52 2.01
92 93 2.899256 AGGTGGCACATGCAAATTTACT 59.101 40.909 20.82 0.00 44.52 2.24
93 94 3.324556 AGGTGGCACATGCAAATTTACTT 59.675 39.130 20.82 0.00 44.52 2.24
94 95 4.526262 AGGTGGCACATGCAAATTTACTTA 59.474 37.500 20.82 0.00 44.52 2.24
95 96 4.864247 GGTGGCACATGCAAATTTACTTAG 59.136 41.667 20.82 0.00 44.52 2.18
96 97 4.864247 GTGGCACATGCAAATTTACTTAGG 59.136 41.667 13.86 0.00 44.52 2.69
97 98 4.769488 TGGCACATGCAAATTTACTTAGGA 59.231 37.500 6.15 0.00 44.36 2.94
98 99 5.102313 GGCACATGCAAATTTACTTAGGAC 58.898 41.667 6.15 0.00 44.36 3.85
99 100 4.793216 GCACATGCAAATTTACTTAGGACG 59.207 41.667 0.00 0.00 41.59 4.79
100 101 5.331902 CACATGCAAATTTACTTAGGACGG 58.668 41.667 0.00 0.00 0.00 4.79
101 102 4.142469 ACATGCAAATTTACTTAGGACGGC 60.142 41.667 0.00 0.00 0.00 5.68
102 103 3.413327 TGCAAATTTACTTAGGACGGCA 58.587 40.909 0.00 0.00 0.00 5.69
103 104 3.438781 TGCAAATTTACTTAGGACGGCAG 59.561 43.478 0.00 0.00 0.00 4.85
104 105 3.181500 GCAAATTTACTTAGGACGGCAGG 60.181 47.826 0.00 0.00 0.00 4.85
105 106 3.277142 AATTTACTTAGGACGGCAGGG 57.723 47.619 0.00 0.00 0.00 4.45
106 107 1.648116 TTTACTTAGGACGGCAGGGT 58.352 50.000 0.00 0.00 0.00 4.34
107 108 2.530460 TTACTTAGGACGGCAGGGTA 57.470 50.000 0.00 0.00 0.00 3.69
108 109 2.530460 TACTTAGGACGGCAGGGTAA 57.470 50.000 0.00 0.00 0.00 2.85
109 110 1.875488 ACTTAGGACGGCAGGGTAAT 58.125 50.000 0.00 0.00 0.00 1.89
110 111 3.036452 ACTTAGGACGGCAGGGTAATA 57.964 47.619 0.00 0.00 0.00 0.98
111 112 2.697229 ACTTAGGACGGCAGGGTAATAC 59.303 50.000 0.00 0.00 0.00 1.89
112 113 1.708341 TAGGACGGCAGGGTAATACC 58.292 55.000 0.00 0.00 37.60 2.73
115 116 2.502093 CGGCAGGGTAATACCGCA 59.498 61.111 10.64 0.00 39.83 5.69
116 117 1.070786 CGGCAGGGTAATACCGCAT 59.929 57.895 10.64 0.00 39.83 4.73
117 118 0.319083 CGGCAGGGTAATACCGCATA 59.681 55.000 10.64 0.00 39.83 3.14
118 119 1.066430 CGGCAGGGTAATACCGCATAT 60.066 52.381 10.64 0.00 39.83 1.78
119 120 2.166870 CGGCAGGGTAATACCGCATATA 59.833 50.000 10.64 0.00 39.83 0.86
120 121 3.737047 CGGCAGGGTAATACCGCATATAG 60.737 52.174 10.64 0.00 39.83 1.31
121 122 3.431766 GGCAGGGTAATACCGCATATAGG 60.432 52.174 10.64 0.00 39.83 2.57
122 123 3.197116 GCAGGGTAATACCGCATATAGGT 59.803 47.826 3.01 7.16 45.28 3.08
123 124 4.403432 GCAGGGTAATACCGCATATAGGTA 59.597 45.833 3.01 10.56 46.90 3.08
124 125 5.451520 GCAGGGTAATACCGCATATAGGTAG 60.452 48.000 12.88 2.25 46.17 3.18
125 126 5.068723 CAGGGTAATACCGCATATAGGTAGG 59.931 48.000 12.88 0.61 46.17 3.18
126 127 4.958581 GGGTAATACCGCATATAGGTAGGT 59.041 45.833 12.88 10.55 46.17 3.08
127 128 6.068853 AGGGTAATACCGCATATAGGTAGGTA 60.069 42.308 13.44 13.44 46.17 3.08
128 129 6.779539 GGGTAATACCGCATATAGGTAGGTAT 59.220 42.308 15.86 15.86 46.17 2.73
129 130 7.255730 GGGTAATACCGCATATAGGTAGGTATG 60.256 44.444 19.71 0.00 46.17 2.39
130 131 6.726490 AATACCGCATATAGGTAGGTATGG 57.274 41.667 19.71 1.91 46.17 2.74
131 132 4.057063 ACCGCATATAGGTAGGTATGGT 57.943 45.455 5.17 0.00 40.80 3.55
132 133 3.767673 ACCGCATATAGGTAGGTATGGTG 59.232 47.826 5.17 0.00 40.80 4.17
133 134 3.132289 CCGCATATAGGTAGGTATGGTGG 59.868 52.174 0.00 0.00 0.00 4.61
134 135 4.021229 CGCATATAGGTAGGTATGGTGGA 58.979 47.826 0.00 0.00 0.00 4.02
135 136 4.142227 CGCATATAGGTAGGTATGGTGGAC 60.142 50.000 0.00 0.00 0.00 4.02
136 137 5.024118 GCATATAGGTAGGTATGGTGGACT 58.976 45.833 0.00 0.00 0.00 3.85
137 138 5.127356 GCATATAGGTAGGTATGGTGGACTC 59.873 48.000 0.00 0.00 0.00 3.36
138 139 4.827036 ATAGGTAGGTATGGTGGACTCA 57.173 45.455 0.00 0.00 0.00 3.41
139 140 3.708236 AGGTAGGTATGGTGGACTCAT 57.292 47.619 0.00 0.00 0.00 2.90
140 141 3.577919 AGGTAGGTATGGTGGACTCATC 58.422 50.000 0.00 0.00 0.00 2.92
141 142 3.207777 AGGTAGGTATGGTGGACTCATCT 59.792 47.826 0.00 0.00 0.00 2.90
142 143 3.322254 GGTAGGTATGGTGGACTCATCTG 59.678 52.174 0.00 0.00 0.00 2.90
143 144 2.402564 AGGTATGGTGGACTCATCTGG 58.597 52.381 0.00 0.00 0.00 3.86
144 145 2.023015 AGGTATGGTGGACTCATCTGGA 60.023 50.000 0.00 0.00 0.00 3.86
145 146 2.771943 GGTATGGTGGACTCATCTGGAA 59.228 50.000 0.00 0.00 0.00 3.53
146 147 3.392616 GGTATGGTGGACTCATCTGGAAT 59.607 47.826 0.00 0.00 0.00 3.01
147 148 4.593206 GGTATGGTGGACTCATCTGGAATA 59.407 45.833 0.00 0.00 0.00 1.75
148 149 5.071788 GGTATGGTGGACTCATCTGGAATAA 59.928 44.000 0.00 0.00 0.00 1.40
149 150 4.487714 TGGTGGACTCATCTGGAATAAC 57.512 45.455 0.00 0.00 0.00 1.89
150 151 4.104086 TGGTGGACTCATCTGGAATAACT 58.896 43.478 0.00 0.00 0.00 2.24
151 152 4.536090 TGGTGGACTCATCTGGAATAACTT 59.464 41.667 0.00 0.00 0.00 2.66
152 153 5.014123 TGGTGGACTCATCTGGAATAACTTT 59.986 40.000 0.00 0.00 0.00 2.66
153 154 5.946377 GGTGGACTCATCTGGAATAACTTTT 59.054 40.000 0.00 0.00 0.00 2.27
154 155 6.127897 GGTGGACTCATCTGGAATAACTTTTG 60.128 42.308 0.00 0.00 0.00 2.44
155 156 5.945784 TGGACTCATCTGGAATAACTTTTGG 59.054 40.000 0.00 0.00 0.00 3.28
156 157 5.946377 GGACTCATCTGGAATAACTTTTGGT 59.054 40.000 0.00 0.00 0.00 3.67
157 158 6.434340 GGACTCATCTGGAATAACTTTTGGTT 59.566 38.462 0.00 0.00 41.54 3.67
158 159 7.362142 GGACTCATCTGGAATAACTTTTGGTTC 60.362 40.741 0.00 0.00 39.17 3.62
159 160 7.004086 ACTCATCTGGAATAACTTTTGGTTCA 58.996 34.615 0.00 0.00 39.17 3.18
160 161 7.505585 ACTCATCTGGAATAACTTTTGGTTCAA 59.494 33.333 0.00 0.00 39.17 2.69
161 162 7.885297 TCATCTGGAATAACTTTTGGTTCAAG 58.115 34.615 0.00 0.00 39.17 3.02
162 163 6.648879 TCTGGAATAACTTTTGGTTCAAGG 57.351 37.500 0.00 0.00 39.17 3.61
163 164 6.133356 TCTGGAATAACTTTTGGTTCAAGGT 58.867 36.000 0.00 0.00 39.17 3.50
164 165 6.609616 TCTGGAATAACTTTTGGTTCAAGGTT 59.390 34.615 0.00 0.00 39.17 3.50
165 166 7.125053 TCTGGAATAACTTTTGGTTCAAGGTTT 59.875 33.333 0.00 0.00 39.17 3.27
166 167 7.269316 TGGAATAACTTTTGGTTCAAGGTTTC 58.731 34.615 0.00 0.00 39.17 2.78
167 168 7.125053 TGGAATAACTTTTGGTTCAAGGTTTCT 59.875 33.333 0.00 0.00 39.17 2.52
168 169 7.985184 GGAATAACTTTTGGTTCAAGGTTTCTT 59.015 33.333 0.00 0.00 39.17 2.52
170 171 9.811995 AATAACTTTTGGTTCAAGGTTTCTTAC 57.188 29.630 0.00 0.00 39.17 2.34
171 172 5.886992 ACTTTTGGTTCAAGGTTTCTTACG 58.113 37.500 0.00 0.00 0.00 3.18
172 173 3.974871 TTGGTTCAAGGTTTCTTACGC 57.025 42.857 0.00 0.00 0.00 4.42
173 174 2.920524 TGGTTCAAGGTTTCTTACGCA 58.079 42.857 0.00 0.00 0.00 5.24
174 175 2.614983 TGGTTCAAGGTTTCTTACGCAC 59.385 45.455 0.00 0.00 0.00 5.34
175 176 2.614983 GGTTCAAGGTTTCTTACGCACA 59.385 45.455 0.00 0.00 0.00 4.57
176 177 3.065648 GGTTCAAGGTTTCTTACGCACAA 59.934 43.478 0.00 0.00 0.00 3.33
177 178 4.279659 GTTCAAGGTTTCTTACGCACAAG 58.720 43.478 0.00 0.00 0.00 3.16
178 179 2.289547 TCAAGGTTTCTTACGCACAAGC 59.710 45.455 0.00 0.00 37.42 4.01
179 180 1.961793 AGGTTTCTTACGCACAAGCA 58.038 45.000 0.00 0.00 42.27 3.91
180 181 1.873591 AGGTTTCTTACGCACAAGCAG 59.126 47.619 0.00 0.00 42.27 4.24
181 182 1.871039 GGTTTCTTACGCACAAGCAGA 59.129 47.619 0.00 0.00 42.27 4.26
182 183 2.289547 GGTTTCTTACGCACAAGCAGAA 59.710 45.455 0.00 0.00 42.27 3.02
183 184 3.058224 GGTTTCTTACGCACAAGCAGAAT 60.058 43.478 0.00 0.00 42.27 2.40
184 185 4.151798 GTTTCTTACGCACAAGCAGAATC 58.848 43.478 0.00 0.00 42.27 2.52
185 186 2.346803 TCTTACGCACAAGCAGAATCC 58.653 47.619 0.00 0.00 42.27 3.01
186 187 1.398390 CTTACGCACAAGCAGAATCCC 59.602 52.381 0.00 0.00 42.27 3.85
187 188 0.392461 TACGCACAAGCAGAATCCCC 60.392 55.000 0.00 0.00 42.27 4.81
188 189 1.675310 CGCACAAGCAGAATCCCCA 60.675 57.895 0.00 0.00 42.27 4.96
189 190 1.885871 GCACAAGCAGAATCCCCAC 59.114 57.895 0.00 0.00 41.58 4.61
190 191 0.610232 GCACAAGCAGAATCCCCACT 60.610 55.000 0.00 0.00 41.58 4.00
191 192 1.915141 CACAAGCAGAATCCCCACTT 58.085 50.000 0.00 0.00 0.00 3.16
192 193 2.879756 GCACAAGCAGAATCCCCACTTA 60.880 50.000 0.00 0.00 41.58 2.24
193 194 3.012518 CACAAGCAGAATCCCCACTTAG 58.987 50.000 0.00 0.00 0.00 2.18
194 195 2.644798 ACAAGCAGAATCCCCACTTAGT 59.355 45.455 0.00 0.00 0.00 2.24
195 196 3.844211 ACAAGCAGAATCCCCACTTAGTA 59.156 43.478 0.00 0.00 0.00 1.82
196 197 4.192317 CAAGCAGAATCCCCACTTAGTAC 58.808 47.826 0.00 0.00 0.00 2.73
197 198 3.450904 AGCAGAATCCCCACTTAGTACA 58.549 45.455 0.00 0.00 0.00 2.90
198 199 3.452627 AGCAGAATCCCCACTTAGTACAG 59.547 47.826 0.00 0.00 0.00 2.74
199 200 3.432326 GCAGAATCCCCACTTAGTACAGG 60.432 52.174 0.00 0.00 0.00 4.00
200 201 2.772515 AGAATCCCCACTTAGTACAGGC 59.227 50.000 0.00 0.00 0.00 4.85
201 202 1.120530 ATCCCCACTTAGTACAGGCG 58.879 55.000 0.00 0.00 0.00 5.52
202 203 0.040058 TCCCCACTTAGTACAGGCGA 59.960 55.000 0.00 0.00 0.00 5.54
203 204 0.899720 CCCCACTTAGTACAGGCGAA 59.100 55.000 0.00 0.00 0.00 4.70
204 205 1.134788 CCCCACTTAGTACAGGCGAAG 60.135 57.143 0.00 0.00 0.00 3.79
205 206 1.134788 CCCACTTAGTACAGGCGAAGG 60.135 57.143 0.00 0.00 0.00 3.46
218 219 1.954927 GCGAAGGCTAGCAAATAGGT 58.045 50.000 18.24 0.00 35.83 3.08
219 220 2.289565 GCGAAGGCTAGCAAATAGGTT 58.710 47.619 18.24 0.00 35.83 3.50
220 221 2.032178 GCGAAGGCTAGCAAATAGGTTG 59.968 50.000 18.24 0.00 36.88 3.77
221 222 3.531538 CGAAGGCTAGCAAATAGGTTGA 58.468 45.455 18.24 0.00 39.87 3.18
222 223 3.557595 CGAAGGCTAGCAAATAGGTTGAG 59.442 47.826 18.24 0.00 39.87 3.02
223 224 4.680708 CGAAGGCTAGCAAATAGGTTGAGA 60.681 45.833 18.24 0.00 39.87 3.27
224 225 4.844349 AGGCTAGCAAATAGGTTGAGAA 57.156 40.909 18.24 0.00 39.87 2.87
225 226 4.775236 AGGCTAGCAAATAGGTTGAGAAG 58.225 43.478 18.24 0.00 39.87 2.85
226 227 3.313803 GGCTAGCAAATAGGTTGAGAAGC 59.686 47.826 18.24 0.00 39.87 3.86
227 228 3.001736 GCTAGCAAATAGGTTGAGAAGCG 59.998 47.826 10.63 0.00 39.87 4.68
228 229 2.359900 AGCAAATAGGTTGAGAAGCGG 58.640 47.619 0.00 0.00 39.87 5.52
229 230 1.202188 GCAAATAGGTTGAGAAGCGGC 60.202 52.381 0.00 0.00 39.87 6.53
230 231 1.401905 CAAATAGGTTGAGAAGCGGCC 59.598 52.381 0.00 0.00 39.87 6.13
231 232 0.618458 AATAGGTTGAGAAGCGGCCA 59.382 50.000 2.24 0.00 0.00 5.36
232 233 0.179000 ATAGGTTGAGAAGCGGCCAG 59.821 55.000 2.24 0.00 0.00 4.85
252 253 2.724977 CTAGAGAGCAACAACGGTCA 57.275 50.000 0.00 0.00 35.83 4.02
253 254 3.238108 CTAGAGAGCAACAACGGTCAT 57.762 47.619 0.00 0.00 35.83 3.06
254 255 1.800805 AGAGAGCAACAACGGTCATG 58.199 50.000 0.00 0.00 35.83 3.07
255 256 1.344438 AGAGAGCAACAACGGTCATGA 59.656 47.619 0.00 0.00 35.83 3.07
256 257 2.143122 GAGAGCAACAACGGTCATGAA 58.857 47.619 0.00 0.00 35.83 2.57
257 258 1.873591 AGAGCAACAACGGTCATGAAC 59.126 47.619 0.00 0.00 35.83 3.18
258 259 1.601903 GAGCAACAACGGTCATGAACA 59.398 47.619 12.13 0.00 33.55 3.18
259 260 2.226437 GAGCAACAACGGTCATGAACAT 59.774 45.455 12.13 0.00 33.55 2.71
260 261 2.030893 AGCAACAACGGTCATGAACATG 60.031 45.455 12.13 11.50 40.09 3.21
261 262 2.031245 GCAACAACGGTCATGAACATGA 60.031 45.455 17.76 12.61 44.83 3.07
375 376 6.346896 GTTTTATTTCGAGGACATAGGGTCT 58.653 40.000 0.00 0.00 46.16 3.85
562 768 0.322975 ACTTGAGACATGCCGAAGCT 59.677 50.000 0.00 0.00 40.80 3.74
569 775 1.474077 GACATGCCGAAGCTTGGAAAT 59.526 47.619 10.40 0.23 45.89 2.17
588 794 4.630644 AATCTGACTGGAAGAAGAAGCA 57.369 40.909 0.00 0.00 37.43 3.91
641 847 9.629878 CGAGGACTAATACCATAACCTATCTAT 57.370 37.037 0.00 0.00 0.00 1.98
686 892 2.603473 CCCTCCCCGCCATCGATA 60.603 66.667 0.00 0.00 38.10 2.92
687 893 2.657237 CCTCCCCGCCATCGATAC 59.343 66.667 0.00 0.00 38.10 2.24
689 895 3.282745 CTCCCCGCCATCGATACCG 62.283 68.421 0.00 3.62 38.10 4.02
690 896 3.612681 CCCCGCCATCGATACCGT 61.613 66.667 13.58 0.00 38.10 4.83
692 898 1.663702 CCCGCCATCGATACCGTTC 60.664 63.158 13.58 0.00 38.10 3.95
693 899 1.663702 CCGCCATCGATACCGTTCC 60.664 63.158 13.58 0.00 38.10 3.62
832 1739 3.004002 CACACCTAGTCACGTTACTCACA 59.996 47.826 5.50 0.00 0.00 3.58
1020 2316 4.471747 TGTGTATATAAAGCACACCAGGGA 59.528 41.667 3.80 0.00 41.47 4.20
1082 2560 1.798223 TCGTCCTTCTTTGATTGTGCG 59.202 47.619 0.00 0.00 0.00 5.34
1237 2715 3.072468 GACCACCCCGATCACCGA 61.072 66.667 0.00 0.00 41.76 4.69
1279 2760 0.809385 CCGGCTTCTTCTACACTCGA 59.191 55.000 0.00 0.00 0.00 4.04
1289 2770 3.132629 TCTACACTCGAAGCGACAATC 57.867 47.619 0.00 0.00 0.00 2.67
1297 2778 1.000145 GAAGCGACAATCCGGAGTTC 59.000 55.000 11.34 7.14 0.00 3.01
1440 2921 2.054140 CTCCTCTCTCGCTGGTACGC 62.054 65.000 0.00 0.00 0.00 4.42
1481 2962 3.002862 TGAGTTTTGTTACATCGTGTGCC 59.997 43.478 0.00 0.00 0.00 5.01
1622 3263 4.235360 AGAGGATGTCAACTTTAACGACG 58.765 43.478 0.00 0.00 32.17 5.12
1649 3953 4.065088 TGCTGAAGTGGAAGTGTATTCAC 58.935 43.478 0.00 0.00 44.15 3.18
1713 4017 3.737774 GCAGGAAGCACAATTCTTTTGTC 59.262 43.478 0.00 0.00 44.79 3.18
1720 4024 3.554960 GCACAATTCTTTTGTCCCTTCCC 60.555 47.826 0.00 0.00 0.00 3.97
1744 4049 1.764571 TTGGGCAGTCTACCGCTGTT 61.765 55.000 0.00 0.00 36.42 3.16
1916 4262 4.084287 TGGTTCGACCAGTACTCTATGTT 58.916 43.478 0.00 0.00 44.79 2.71
1917 4263 4.157289 TGGTTCGACCAGTACTCTATGTTC 59.843 45.833 0.00 0.00 44.79 3.18
1918 4264 4.398673 GGTTCGACCAGTACTCTATGTTCT 59.601 45.833 0.00 0.00 38.42 3.01
1919 4265 5.105837 GGTTCGACCAGTACTCTATGTTCTT 60.106 44.000 0.00 0.00 38.42 2.52
1920 4266 5.562506 TCGACCAGTACTCTATGTTCTTG 57.437 43.478 0.00 0.00 0.00 3.02
1921 4267 5.250982 TCGACCAGTACTCTATGTTCTTGA 58.749 41.667 0.00 0.00 0.00 3.02
1928 4280 8.132362 CCAGTACTCTATGTTCTTGATGACTAC 58.868 40.741 0.00 0.00 0.00 2.73
1957 4309 6.335777 GCAAAGAGTGGAAATTGAAGCATAT 58.664 36.000 0.00 0.00 0.00 1.78
1964 4316 7.092716 AGTGGAAATTGAAGCATATTGTTGAC 58.907 34.615 0.00 0.00 0.00 3.18
2020 4373 2.519002 TCCGATTTGTTTGCGATTCG 57.481 45.000 0.62 0.62 33.83 3.34
2124 4477 2.758423 TGATATGATATGGACCGTCGGG 59.242 50.000 17.28 0.00 40.11 5.14
2170 4525 2.671370 CTATCTGCCACGCCTGCCAT 62.671 60.000 0.00 0.00 0.00 4.40
2171 4526 1.406860 TATCTGCCACGCCTGCCATA 61.407 55.000 0.00 0.00 0.00 2.74
2234 4597 7.739022 TCAATACGAAATTCATTTCATGCAC 57.261 32.000 11.83 0.00 44.83 4.57
2377 4740 5.874892 TGTATGCACGTTTTTAGCAAAAC 57.125 34.783 1.35 4.59 45.80 2.43
2600 4963 8.977505 TGATGCTAATTACTTTTGTTTGCTTTC 58.022 29.630 0.00 0.00 0.00 2.62
2726 5089 4.210331 AGGTCTGAAACAAGAAATGCACT 58.790 39.130 0.00 0.00 0.00 4.40
2812 5175 7.615403 AGATAATATGGACACTAATGACGCAT 58.385 34.615 0.00 0.00 0.00 4.73
2818 5181 3.429547 GGACACTAATGACGCATCAGACT 60.430 47.826 0.00 0.00 38.57 3.24
2821 5184 2.932614 ACTAATGACGCATCAGACTTGC 59.067 45.455 0.00 0.00 38.57 4.01
2984 5365 5.121768 ACAGTGCGCCATTACTAGTTTTAAG 59.878 40.000 4.18 0.00 0.00 1.85
2986 5367 5.704053 AGTGCGCCATTACTAGTTTTAAGTT 59.296 36.000 4.18 0.00 0.00 2.66
3063 5459 4.355543 ACTTACTAATGGCGCATTTGTG 57.644 40.909 20.51 12.41 39.33 3.33
3127 5528 0.392706 CAGCCACCTACACACTCACA 59.607 55.000 0.00 0.00 0.00 3.58
3128 5529 0.681733 AGCCACCTACACACTCACAG 59.318 55.000 0.00 0.00 0.00 3.66
3132 5533 1.686587 CACCTACACACTCACAGTCCA 59.313 52.381 0.00 0.00 0.00 4.02
3137 5538 1.137086 ACACACTCACAGTCCACACTC 59.863 52.381 0.00 0.00 0.00 3.51
3166 5568 1.573108 CACCTCCTCCTCCAAGCTTA 58.427 55.000 0.00 0.00 0.00 3.09
3185 5587 2.012824 ATCTCGGCTGCCTCCTCCTA 62.013 60.000 17.92 0.00 0.00 2.94
3317 5724 2.010286 CCAACAACGTGCACATGCG 61.010 57.895 18.64 5.14 45.83 4.73
3349 5756 5.654209 TGGCCTAGCTAGATCTATGTATGTG 59.346 44.000 22.70 1.54 0.00 3.21
3358 5783 6.299805 AGATCTATGTATGTGTGTGGTGTT 57.700 37.500 0.00 0.00 0.00 3.32
3359 5784 6.108687 AGATCTATGTATGTGTGTGGTGTTG 58.891 40.000 0.00 0.00 0.00 3.33
3360 5785 4.000325 TCTATGTATGTGTGTGGTGTTGC 59.000 43.478 0.00 0.00 0.00 4.17
3361 5786 2.044123 TGTATGTGTGTGGTGTTGCA 57.956 45.000 0.00 0.00 0.00 4.08
3362 5787 2.580962 TGTATGTGTGTGGTGTTGCAT 58.419 42.857 0.00 0.00 0.00 3.96
3363 5788 3.744660 TGTATGTGTGTGGTGTTGCATA 58.255 40.909 0.00 0.00 0.00 3.14
3364 5789 4.331108 TGTATGTGTGTGGTGTTGCATAT 58.669 39.130 0.00 0.00 0.00 1.78
3365 5790 3.853831 ATGTGTGTGGTGTTGCATATG 57.146 42.857 0.00 0.00 0.00 1.78
3366 5791 2.580962 TGTGTGTGGTGTTGCATATGT 58.419 42.857 4.29 0.00 0.00 2.29
3367 5792 2.954989 TGTGTGTGGTGTTGCATATGTT 59.045 40.909 4.29 0.00 0.00 2.71
3368 5793 3.382865 TGTGTGTGGTGTTGCATATGTTT 59.617 39.130 4.29 0.00 0.00 2.83
3369 5794 3.735240 GTGTGTGGTGTTGCATATGTTTG 59.265 43.478 4.29 0.00 0.00 2.93
3370 5795 3.382865 TGTGTGGTGTTGCATATGTTTGT 59.617 39.130 4.29 0.00 0.00 2.83
3404 5829 2.447443 TGTTTGTGTTTGCAGGTACCA 58.553 42.857 15.94 0.00 0.00 3.25
3509 5935 8.094548 GCATTCTTTTTGGTCCTATTTTTAGGT 58.905 33.333 0.00 0.00 38.38 3.08
3566 5993 0.618458 ATTTTGCTCTACCCCGCAGA 59.382 50.000 0.00 0.00 37.46 4.26
3570 5997 2.491022 GCTCTACCCCGCAGACGAT 61.491 63.158 0.00 0.00 43.93 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.808583 GACAGGAAGTGGTCGGTAC 57.191 57.895 0.00 0.00 0.00 3.34
6 7 1.056660 ATGGAACGACAGGAAGTGGT 58.943 50.000 0.00 0.00 41.26 4.16
7 8 1.001974 TCATGGAACGACAGGAAGTGG 59.998 52.381 0.00 0.00 0.00 4.00
8 9 2.455674 TCATGGAACGACAGGAAGTG 57.544 50.000 0.00 0.00 0.00 3.16
9 10 3.007940 TCATTCATGGAACGACAGGAAGT 59.992 43.478 10.85 0.00 43.28 3.01
10 11 3.599343 TCATTCATGGAACGACAGGAAG 58.401 45.455 10.85 5.53 43.28 3.46
11 12 3.694043 TCATTCATGGAACGACAGGAA 57.306 42.857 8.45 8.45 44.01 3.36
12 13 3.432186 GGATCATTCATGGAACGACAGGA 60.432 47.826 0.00 0.00 0.00 3.86
13 14 2.874701 GGATCATTCATGGAACGACAGG 59.125 50.000 0.00 0.00 0.00 4.00
14 15 2.541346 CGGATCATTCATGGAACGACAG 59.459 50.000 0.00 0.00 0.00 3.51
15 16 2.549926 CGGATCATTCATGGAACGACA 58.450 47.619 0.00 0.00 0.00 4.35
16 17 1.867233 CCGGATCATTCATGGAACGAC 59.133 52.381 0.00 0.00 0.00 4.34
17 18 1.202639 CCCGGATCATTCATGGAACGA 60.203 52.381 0.73 0.00 0.00 3.85
18 19 1.229428 CCCGGATCATTCATGGAACG 58.771 55.000 0.73 0.00 0.00 3.95
19 20 0.954452 GCCCGGATCATTCATGGAAC 59.046 55.000 0.73 0.00 0.00 3.62
20 21 0.550432 TGCCCGGATCATTCATGGAA 59.450 50.000 0.73 0.00 0.00 3.53
21 22 0.179020 GTGCCCGGATCATTCATGGA 60.179 55.000 0.73 0.00 0.00 3.41
22 23 0.466007 TGTGCCCGGATCATTCATGG 60.466 55.000 0.73 0.00 0.00 3.66
23 24 0.664761 GTGTGCCCGGATCATTCATG 59.335 55.000 0.73 0.00 0.00 3.07
24 25 0.255604 TGTGTGCCCGGATCATTCAT 59.744 50.000 0.73 0.00 0.00 2.57
25 26 0.037447 TTGTGTGCCCGGATCATTCA 59.963 50.000 0.73 1.62 0.00 2.57
26 27 1.173043 TTTGTGTGCCCGGATCATTC 58.827 50.000 0.73 0.00 0.00 2.67
27 28 1.626686 TTTTGTGTGCCCGGATCATT 58.373 45.000 0.73 0.00 0.00 2.57
28 29 1.545582 CTTTTTGTGTGCCCGGATCAT 59.454 47.619 0.73 0.00 0.00 2.45
29 30 0.958091 CTTTTTGTGTGCCCGGATCA 59.042 50.000 0.73 0.00 0.00 2.92
30 31 0.243636 CCTTTTTGTGTGCCCGGATC 59.756 55.000 0.73 0.00 0.00 3.36
31 32 0.178975 TCCTTTTTGTGTGCCCGGAT 60.179 50.000 0.73 0.00 0.00 4.18
32 33 0.178975 ATCCTTTTTGTGTGCCCGGA 60.179 50.000 0.73 0.00 0.00 5.14
33 34 1.540267 TATCCTTTTTGTGTGCCCGG 58.460 50.000 0.00 0.00 0.00 5.73
34 35 3.866883 AATATCCTTTTTGTGTGCCCG 57.133 42.857 0.00 0.00 0.00 6.13
35 36 8.691797 TCTAATAAATATCCTTTTTGTGTGCCC 58.308 33.333 0.00 0.00 0.00 5.36
52 53 9.528489 TGCCACCTCTAAAAACTTCTAATAAAT 57.472 29.630 0.00 0.00 0.00 1.40
53 54 8.789762 GTGCCACCTCTAAAAACTTCTAATAAA 58.210 33.333 0.00 0.00 0.00 1.40
54 55 7.940137 TGTGCCACCTCTAAAAACTTCTAATAA 59.060 33.333 0.00 0.00 0.00 1.40
55 56 7.455058 TGTGCCACCTCTAAAAACTTCTAATA 58.545 34.615 0.00 0.00 0.00 0.98
56 57 6.303839 TGTGCCACCTCTAAAAACTTCTAAT 58.696 36.000 0.00 0.00 0.00 1.73
57 58 5.686753 TGTGCCACCTCTAAAAACTTCTAA 58.313 37.500 0.00 0.00 0.00 2.10
58 59 5.298989 TGTGCCACCTCTAAAAACTTCTA 57.701 39.130 0.00 0.00 0.00 2.10
59 60 4.164843 TGTGCCACCTCTAAAAACTTCT 57.835 40.909 0.00 0.00 0.00 2.85
60 61 4.798574 CATGTGCCACCTCTAAAAACTTC 58.201 43.478 0.00 0.00 0.00 3.01
61 62 3.005791 GCATGTGCCACCTCTAAAAACTT 59.994 43.478 0.00 0.00 34.31 2.66
62 63 2.558359 GCATGTGCCACCTCTAAAAACT 59.442 45.455 0.00 0.00 34.31 2.66
63 64 2.295909 TGCATGTGCCACCTCTAAAAAC 59.704 45.455 2.07 0.00 41.18 2.43
64 65 2.591923 TGCATGTGCCACCTCTAAAAA 58.408 42.857 2.07 0.00 41.18 1.94
65 66 2.284754 TGCATGTGCCACCTCTAAAA 57.715 45.000 2.07 0.00 41.18 1.52
66 67 2.284754 TTGCATGTGCCACCTCTAAA 57.715 45.000 2.07 0.00 41.18 1.85
67 68 2.284754 TTTGCATGTGCCACCTCTAA 57.715 45.000 2.07 0.00 41.18 2.10
68 69 2.512692 ATTTGCATGTGCCACCTCTA 57.487 45.000 2.07 0.00 41.18 2.43
69 70 1.636148 AATTTGCATGTGCCACCTCT 58.364 45.000 2.07 0.00 41.18 3.69
70 71 2.460757 AAATTTGCATGTGCCACCTC 57.539 45.000 2.07 0.00 41.18 3.85
71 72 2.899256 AGTAAATTTGCATGTGCCACCT 59.101 40.909 9.04 0.00 41.18 4.00
72 73 3.317603 AGTAAATTTGCATGTGCCACC 57.682 42.857 9.04 0.00 41.18 4.61
73 74 4.864247 CCTAAGTAAATTTGCATGTGCCAC 59.136 41.667 9.04 0.00 41.18 5.01
74 75 4.769488 TCCTAAGTAAATTTGCATGTGCCA 59.231 37.500 9.04 0.00 41.18 4.92
75 76 5.102313 GTCCTAAGTAAATTTGCATGTGCC 58.898 41.667 9.04 0.00 41.18 5.01
76 77 4.793216 CGTCCTAAGTAAATTTGCATGTGC 59.207 41.667 9.04 0.00 42.50 4.57
77 78 5.331902 CCGTCCTAAGTAAATTTGCATGTG 58.668 41.667 9.04 0.00 0.00 3.21
78 79 4.142469 GCCGTCCTAAGTAAATTTGCATGT 60.142 41.667 9.04 0.00 0.00 3.21
79 80 4.142491 TGCCGTCCTAAGTAAATTTGCATG 60.142 41.667 9.04 0.00 0.00 4.06
80 81 4.013728 TGCCGTCCTAAGTAAATTTGCAT 58.986 39.130 9.04 0.00 0.00 3.96
81 82 3.413327 TGCCGTCCTAAGTAAATTTGCA 58.587 40.909 9.04 0.00 0.00 4.08
82 83 3.181500 CCTGCCGTCCTAAGTAAATTTGC 60.181 47.826 0.00 0.00 0.00 3.68
83 84 3.377172 CCCTGCCGTCCTAAGTAAATTTG 59.623 47.826 0.00 0.00 0.00 2.32
84 85 3.009805 ACCCTGCCGTCCTAAGTAAATTT 59.990 43.478 0.00 0.00 0.00 1.82
85 86 2.574824 ACCCTGCCGTCCTAAGTAAATT 59.425 45.455 0.00 0.00 0.00 1.82
86 87 2.193993 ACCCTGCCGTCCTAAGTAAAT 58.806 47.619 0.00 0.00 0.00 1.40
87 88 1.648116 ACCCTGCCGTCCTAAGTAAA 58.352 50.000 0.00 0.00 0.00 2.01
88 89 2.530460 TACCCTGCCGTCCTAAGTAA 57.470 50.000 0.00 0.00 0.00 2.24
89 90 2.530460 TTACCCTGCCGTCCTAAGTA 57.470 50.000 0.00 0.00 0.00 2.24
90 91 1.875488 ATTACCCTGCCGTCCTAAGT 58.125 50.000 0.00 0.00 0.00 2.24
91 92 2.036862 GGTATTACCCTGCCGTCCTAAG 59.963 54.545 0.98 0.00 30.04 2.18
92 93 2.041701 GGTATTACCCTGCCGTCCTAA 58.958 52.381 0.98 0.00 30.04 2.69
93 94 1.708341 GGTATTACCCTGCCGTCCTA 58.292 55.000 0.98 0.00 30.04 2.94
94 95 1.397390 CGGTATTACCCTGCCGTCCT 61.397 60.000 7.29 0.00 39.26 3.85
95 96 1.068585 CGGTATTACCCTGCCGTCC 59.931 63.158 7.29 0.00 39.26 4.79
96 97 1.593479 GCGGTATTACCCTGCCGTC 60.593 63.158 7.29 0.00 44.98 4.79
97 98 1.692173 ATGCGGTATTACCCTGCCGT 61.692 55.000 7.29 0.00 44.98 5.68
98 99 0.319083 TATGCGGTATTACCCTGCCG 59.681 55.000 7.29 0.00 45.82 5.69
99 100 2.781681 ATATGCGGTATTACCCTGCC 57.218 50.000 7.29 0.00 33.75 4.85
100 101 3.197116 ACCTATATGCGGTATTACCCTGC 59.803 47.826 7.29 6.54 33.75 4.85
101 102 5.068723 CCTACCTATATGCGGTATTACCCTG 59.931 48.000 7.29 0.00 36.49 4.45
102 103 5.206587 CCTACCTATATGCGGTATTACCCT 58.793 45.833 7.29 0.00 36.49 4.34
103 104 4.958581 ACCTACCTATATGCGGTATTACCC 59.041 45.833 7.29 1.41 36.49 3.69
104 105 7.255730 CCATACCTACCTATATGCGGTATTACC 60.256 44.444 2.50 2.50 38.52 2.85
105 106 7.286316 ACCATACCTACCTATATGCGGTATTAC 59.714 40.741 6.28 0.00 38.52 1.89
106 107 7.286087 CACCATACCTACCTATATGCGGTATTA 59.714 40.741 6.28 3.17 38.52 0.98
107 108 6.097839 CACCATACCTACCTATATGCGGTATT 59.902 42.308 6.28 1.51 38.52 1.89
108 109 5.597182 CACCATACCTACCTATATGCGGTAT 59.403 44.000 6.28 0.00 40.56 2.73
109 110 4.951715 CACCATACCTACCTATATGCGGTA 59.048 45.833 5.83 5.83 35.98 4.02
110 111 3.767673 CACCATACCTACCTATATGCGGT 59.232 47.826 4.25 4.25 38.55 5.68
111 112 3.132289 CCACCATACCTACCTATATGCGG 59.868 52.174 0.00 0.00 0.00 5.69
112 113 4.021229 TCCACCATACCTACCTATATGCG 58.979 47.826 0.00 0.00 0.00 4.73
113 114 5.024118 AGTCCACCATACCTACCTATATGC 58.976 45.833 0.00 0.00 0.00 3.14
114 115 6.253758 TGAGTCCACCATACCTACCTATATG 58.746 44.000 0.00 0.00 0.00 1.78
115 116 6.479395 TGAGTCCACCATACCTACCTATAT 57.521 41.667 0.00 0.00 0.00 0.86
116 117 5.935668 TGAGTCCACCATACCTACCTATA 57.064 43.478 0.00 0.00 0.00 1.31
117 118 4.827036 TGAGTCCACCATACCTACCTAT 57.173 45.455 0.00 0.00 0.00 2.57
118 119 4.419200 AGATGAGTCCACCATACCTACCTA 59.581 45.833 0.00 0.00 0.00 3.08
119 120 3.207777 AGATGAGTCCACCATACCTACCT 59.792 47.826 0.00 0.00 0.00 3.08
120 121 3.322254 CAGATGAGTCCACCATACCTACC 59.678 52.174 0.00 0.00 0.00 3.18
121 122 3.322254 CCAGATGAGTCCACCATACCTAC 59.678 52.174 0.00 0.00 0.00 3.18
122 123 3.206639 TCCAGATGAGTCCACCATACCTA 59.793 47.826 0.00 0.00 0.00 3.08
123 124 2.023015 TCCAGATGAGTCCACCATACCT 60.023 50.000 0.00 0.00 0.00 3.08
124 125 2.398588 TCCAGATGAGTCCACCATACC 58.601 52.381 0.00 0.00 0.00 2.73
125 126 4.696479 ATTCCAGATGAGTCCACCATAC 57.304 45.455 0.00 0.00 0.00 2.39
126 127 5.905331 AGTTATTCCAGATGAGTCCACCATA 59.095 40.000 0.00 0.00 0.00 2.74
127 128 4.723789 AGTTATTCCAGATGAGTCCACCAT 59.276 41.667 0.00 0.00 0.00 3.55
128 129 4.104086 AGTTATTCCAGATGAGTCCACCA 58.896 43.478 0.00 0.00 0.00 4.17
129 130 4.762289 AGTTATTCCAGATGAGTCCACC 57.238 45.455 0.00 0.00 0.00 4.61
130 131 6.127897 CCAAAAGTTATTCCAGATGAGTCCAC 60.128 42.308 0.00 0.00 0.00 4.02
131 132 5.945784 CCAAAAGTTATTCCAGATGAGTCCA 59.054 40.000 0.00 0.00 0.00 4.02
132 133 5.946377 ACCAAAAGTTATTCCAGATGAGTCC 59.054 40.000 0.00 0.00 0.00 3.85
133 134 7.174946 TGAACCAAAAGTTATTCCAGATGAGTC 59.825 37.037 0.00 0.00 39.40 3.36
134 135 7.004086 TGAACCAAAAGTTATTCCAGATGAGT 58.996 34.615 0.00 0.00 39.40 3.41
135 136 7.452880 TGAACCAAAAGTTATTCCAGATGAG 57.547 36.000 0.00 0.00 39.40 2.90
136 137 7.039784 CCTTGAACCAAAAGTTATTCCAGATGA 60.040 37.037 0.00 0.00 39.40 2.92
137 138 7.092716 CCTTGAACCAAAAGTTATTCCAGATG 58.907 38.462 0.00 0.00 39.40 2.90
138 139 6.782494 ACCTTGAACCAAAAGTTATTCCAGAT 59.218 34.615 0.00 0.00 39.40 2.90
139 140 6.133356 ACCTTGAACCAAAAGTTATTCCAGA 58.867 36.000 0.00 0.00 39.40 3.86
140 141 6.405278 ACCTTGAACCAAAAGTTATTCCAG 57.595 37.500 0.00 0.00 39.40 3.86
141 142 6.800072 AACCTTGAACCAAAAGTTATTCCA 57.200 33.333 0.00 0.00 39.40 3.53
142 143 7.497595 AGAAACCTTGAACCAAAAGTTATTCC 58.502 34.615 0.00 0.00 39.40 3.01
143 144 8.942338 AAGAAACCTTGAACCAAAAGTTATTC 57.058 30.769 0.00 0.00 39.40 1.75
144 145 9.811995 GTAAGAAACCTTGAACCAAAAGTTATT 57.188 29.630 0.00 0.00 39.40 1.40
145 146 8.132995 CGTAAGAAACCTTGAACCAAAAGTTAT 58.867 33.333 0.00 0.00 38.30 1.89
146 147 7.474190 CGTAAGAAACCTTGAACCAAAAGTTA 58.526 34.615 0.00 0.00 38.30 2.24
147 148 6.327154 CGTAAGAAACCTTGAACCAAAAGTT 58.673 36.000 0.00 0.00 40.66 2.66
148 149 5.677852 GCGTAAGAAACCTTGAACCAAAAGT 60.678 40.000 0.00 0.00 43.02 2.66
149 150 4.738252 GCGTAAGAAACCTTGAACCAAAAG 59.262 41.667 0.00 0.00 43.02 2.27
150 151 4.158025 TGCGTAAGAAACCTTGAACCAAAA 59.842 37.500 0.00 0.00 43.02 2.44
151 152 3.695060 TGCGTAAGAAACCTTGAACCAAA 59.305 39.130 0.00 0.00 43.02 3.28
152 153 3.065648 GTGCGTAAGAAACCTTGAACCAA 59.934 43.478 0.00 0.00 43.02 3.67
153 154 2.614983 GTGCGTAAGAAACCTTGAACCA 59.385 45.455 0.00 0.00 43.02 3.67
154 155 2.614983 TGTGCGTAAGAAACCTTGAACC 59.385 45.455 0.00 0.00 43.02 3.62
155 156 3.955771 TGTGCGTAAGAAACCTTGAAC 57.044 42.857 0.00 0.00 43.02 3.18
156 157 3.242936 GCTTGTGCGTAAGAAACCTTGAA 60.243 43.478 4.15 0.00 43.02 2.69
157 158 2.289547 GCTTGTGCGTAAGAAACCTTGA 59.710 45.455 4.15 0.00 43.02 3.02
158 159 2.032799 TGCTTGTGCGTAAGAAACCTTG 59.967 45.455 4.15 0.00 43.34 3.61
159 160 2.290641 CTGCTTGTGCGTAAGAAACCTT 59.709 45.455 4.15 0.00 43.34 3.50
160 161 1.873591 CTGCTTGTGCGTAAGAAACCT 59.126 47.619 4.15 0.00 43.34 3.50
161 162 1.871039 TCTGCTTGTGCGTAAGAAACC 59.129 47.619 4.15 0.00 43.34 3.27
162 163 3.602390 TTCTGCTTGTGCGTAAGAAAC 57.398 42.857 4.15 0.00 43.34 2.78
163 164 3.188460 GGATTCTGCTTGTGCGTAAGAAA 59.812 43.478 4.15 0.00 43.34 2.52
164 165 2.742053 GGATTCTGCTTGTGCGTAAGAA 59.258 45.455 4.15 0.00 43.34 2.52
165 166 2.346803 GGATTCTGCTTGTGCGTAAGA 58.653 47.619 4.15 0.00 43.34 2.10
166 167 1.398390 GGGATTCTGCTTGTGCGTAAG 59.602 52.381 0.00 0.00 43.34 2.34
167 168 1.448985 GGGATTCTGCTTGTGCGTAA 58.551 50.000 0.00 0.00 43.34 3.18
168 169 0.392461 GGGGATTCTGCTTGTGCGTA 60.392 55.000 0.00 0.00 43.34 4.42
169 170 1.675641 GGGGATTCTGCTTGTGCGT 60.676 57.895 0.00 0.00 43.34 5.24
170 171 1.675310 TGGGGATTCTGCTTGTGCG 60.675 57.895 0.00 0.00 43.34 5.34
171 172 0.610232 AGTGGGGATTCTGCTTGTGC 60.610 55.000 0.00 0.00 40.20 4.57
172 173 1.915141 AAGTGGGGATTCTGCTTGTG 58.085 50.000 0.00 0.00 0.00 3.33
173 174 2.644798 ACTAAGTGGGGATTCTGCTTGT 59.355 45.455 0.00 0.00 0.00 3.16
174 175 3.356529 ACTAAGTGGGGATTCTGCTTG 57.643 47.619 0.00 0.00 0.00 4.01
175 176 3.844211 TGTACTAAGTGGGGATTCTGCTT 59.156 43.478 0.00 0.00 0.00 3.91
176 177 3.450904 TGTACTAAGTGGGGATTCTGCT 58.549 45.455 0.00 0.00 0.00 4.24
177 178 3.432326 CCTGTACTAAGTGGGGATTCTGC 60.432 52.174 0.00 0.00 0.00 4.26
178 179 3.432326 GCCTGTACTAAGTGGGGATTCTG 60.432 52.174 0.00 0.00 0.00 3.02
179 180 2.772515 GCCTGTACTAAGTGGGGATTCT 59.227 50.000 0.00 0.00 0.00 2.40
180 181 2.483188 CGCCTGTACTAAGTGGGGATTC 60.483 54.545 0.00 0.00 34.94 2.52
181 182 1.485066 CGCCTGTACTAAGTGGGGATT 59.515 52.381 0.00 0.00 34.94 3.01
182 183 1.120530 CGCCTGTACTAAGTGGGGAT 58.879 55.000 0.00 0.00 34.94 3.85
183 184 0.040058 TCGCCTGTACTAAGTGGGGA 59.960 55.000 0.00 0.00 38.84 4.81
184 185 0.899720 TTCGCCTGTACTAAGTGGGG 59.100 55.000 0.00 0.00 0.00 4.96
185 186 1.134788 CCTTCGCCTGTACTAAGTGGG 60.135 57.143 0.00 0.00 0.00 4.61
186 187 1.739371 GCCTTCGCCTGTACTAAGTGG 60.739 57.143 0.00 0.00 0.00 4.00
187 188 1.204941 AGCCTTCGCCTGTACTAAGTG 59.795 52.381 0.00 0.00 34.57 3.16
188 189 1.558233 AGCCTTCGCCTGTACTAAGT 58.442 50.000 0.00 0.00 34.57 2.24
189 190 2.544069 GCTAGCCTTCGCCTGTACTAAG 60.544 54.545 2.29 0.00 34.57 2.18
190 191 1.407979 GCTAGCCTTCGCCTGTACTAA 59.592 52.381 2.29 0.00 34.57 2.24
191 192 1.030457 GCTAGCCTTCGCCTGTACTA 58.970 55.000 2.29 0.00 34.57 1.82
192 193 0.970937 TGCTAGCCTTCGCCTGTACT 60.971 55.000 13.29 0.00 34.57 2.73
193 194 0.108329 TTGCTAGCCTTCGCCTGTAC 60.108 55.000 13.29 0.00 34.57 2.90
194 195 0.611200 TTTGCTAGCCTTCGCCTGTA 59.389 50.000 13.29 0.00 34.57 2.74
195 196 0.035056 ATTTGCTAGCCTTCGCCTGT 60.035 50.000 13.29 0.00 34.57 4.00
196 197 1.869767 CTATTTGCTAGCCTTCGCCTG 59.130 52.381 13.29 0.00 34.57 4.85
197 198 1.202698 CCTATTTGCTAGCCTTCGCCT 60.203 52.381 13.29 0.00 34.57 5.52
198 199 1.230324 CCTATTTGCTAGCCTTCGCC 58.770 55.000 13.29 0.00 34.57 5.54
199 200 1.954927 ACCTATTTGCTAGCCTTCGC 58.045 50.000 13.29 0.00 0.00 4.70
200 201 3.531538 TCAACCTATTTGCTAGCCTTCG 58.468 45.455 13.29 0.00 34.88 3.79
201 202 4.770795 TCTCAACCTATTTGCTAGCCTTC 58.229 43.478 13.29 0.00 34.88 3.46
202 203 4.844349 TCTCAACCTATTTGCTAGCCTT 57.156 40.909 13.29 0.00 34.88 4.35
203 204 4.775236 CTTCTCAACCTATTTGCTAGCCT 58.225 43.478 13.29 0.00 34.88 4.58
204 205 3.313803 GCTTCTCAACCTATTTGCTAGCC 59.686 47.826 13.29 0.00 34.88 3.93
205 206 3.001736 CGCTTCTCAACCTATTTGCTAGC 59.998 47.826 8.10 8.10 34.88 3.42
206 207 3.557595 CCGCTTCTCAACCTATTTGCTAG 59.442 47.826 0.00 0.00 34.88 3.42
207 208 3.531538 CCGCTTCTCAACCTATTTGCTA 58.468 45.455 0.00 0.00 34.88 3.49
208 209 2.359900 CCGCTTCTCAACCTATTTGCT 58.640 47.619 0.00 0.00 34.88 3.91
209 210 1.202188 GCCGCTTCTCAACCTATTTGC 60.202 52.381 0.00 0.00 34.88 3.68
210 211 1.401905 GGCCGCTTCTCAACCTATTTG 59.598 52.381 0.00 0.00 36.42 2.32
211 212 1.004277 TGGCCGCTTCTCAACCTATTT 59.996 47.619 0.00 0.00 0.00 1.40
212 213 0.618458 TGGCCGCTTCTCAACCTATT 59.382 50.000 0.00 0.00 0.00 1.73
213 214 0.179000 CTGGCCGCTTCTCAACCTAT 59.821 55.000 0.00 0.00 0.00 2.57
214 215 1.596934 CTGGCCGCTTCTCAACCTA 59.403 57.895 0.00 0.00 0.00 3.08
215 216 2.348998 CTGGCCGCTTCTCAACCT 59.651 61.111 0.00 0.00 0.00 3.50
216 217 3.435186 GCTGGCCGCTTCTCAACC 61.435 66.667 11.61 0.00 35.14 3.77
233 234 2.724977 TGACCGTTGTTGCTCTCTAG 57.275 50.000 0.00 0.00 0.00 2.43
234 235 2.560981 TCATGACCGTTGTTGCTCTCTA 59.439 45.455 0.00 0.00 0.00 2.43
235 236 1.344438 TCATGACCGTTGTTGCTCTCT 59.656 47.619 0.00 0.00 0.00 3.10
236 237 1.795768 TCATGACCGTTGTTGCTCTC 58.204 50.000 0.00 0.00 0.00 3.20
237 238 1.873591 GTTCATGACCGTTGTTGCTCT 59.126 47.619 0.00 0.00 0.00 4.09
238 239 1.601903 TGTTCATGACCGTTGTTGCTC 59.398 47.619 0.00 0.00 0.00 4.26
239 240 1.674359 TGTTCATGACCGTTGTTGCT 58.326 45.000 0.00 0.00 0.00 3.91
240 241 2.031245 TCATGTTCATGACCGTTGTTGC 60.031 45.455 10.88 0.00 0.00 4.17
241 242 3.894782 TCATGTTCATGACCGTTGTTG 57.105 42.857 10.88 0.00 0.00 3.33
242 243 5.452078 AATTCATGTTCATGACCGTTGTT 57.548 34.783 14.00 2.43 0.00 2.83
243 244 6.757897 ATAATTCATGTTCATGACCGTTGT 57.242 33.333 14.00 6.59 0.00 3.32
291 292 1.707106 TTCCCTGTTCGTGTCCACTA 58.293 50.000 0.00 0.00 0.00 2.74
375 376 1.228245 GCACTCCCAGCTCCAACAA 60.228 57.895 0.00 0.00 0.00 2.83
562 768 5.567037 TCTTCTTCCAGTCAGATTTCCAA 57.433 39.130 0.00 0.00 0.00 3.53
569 775 3.580022 TCATGCTTCTTCTTCCAGTCAGA 59.420 43.478 0.00 0.00 0.00 3.27
588 794 1.323271 ACGCTCGGACTGATGGTCAT 61.323 55.000 0.00 0.00 46.16 3.06
625 831 7.342284 GCTCTGGCTAATAGATAGGTTATGGTA 59.658 40.741 0.00 0.00 35.22 3.25
689 895 1.805945 CACTGCGACTAGGCGGAAC 60.806 63.158 21.78 3.25 41.96 3.62
690 896 2.571757 CACTGCGACTAGGCGGAA 59.428 61.111 21.78 0.00 41.96 4.30
692 898 3.649277 AAGCACTGCGACTAGGCGG 62.649 63.158 21.78 9.24 44.93 6.13
693 899 2.125912 AAGCACTGCGACTAGGCG 60.126 61.111 15.42 15.42 35.06 5.52
805 1712 2.743636 ACGTGACTAGGTGTGGATTG 57.256 50.000 0.00 0.00 0.00 2.67
1020 2316 7.307989 GCGATGGCTATACATAGAAAACAACAT 60.308 37.037 0.30 0.00 35.83 2.71
1082 2560 1.996187 GGGGAGGAGTGGAAGGTCC 60.996 68.421 0.00 0.00 36.96 4.46
1213 2691 1.076265 ATCGGGGTGGTCGATGAGA 60.076 57.895 0.00 0.00 44.40 3.27
1237 2715 0.405973 GGGTTTGAGGGAGCTTCCTT 59.594 55.000 16.96 0.04 37.25 3.36
1279 2760 0.391263 GGAACTCCGGATTGTCGCTT 60.391 55.000 3.57 0.00 0.00 4.68
1481 2962 1.676746 CACTCCTTCATGGCAGGATG 58.323 55.000 13.30 5.26 39.84 3.51
1622 3263 1.876156 CACTTCCACTTCAGCAAGGTC 59.124 52.381 0.00 0.00 33.37 3.85
1649 3953 0.839946 ATCCATCTCCTGGTTTCCGG 59.160 55.000 0.00 0.00 46.08 5.14
1916 4262 1.170442 TGCGGTCGTAGTCATCAAGA 58.830 50.000 0.00 0.00 0.00 3.02
1917 4263 1.990799 TTGCGGTCGTAGTCATCAAG 58.009 50.000 0.00 0.00 0.00 3.02
1918 4264 2.029739 TCTTTGCGGTCGTAGTCATCAA 60.030 45.455 0.00 0.00 0.00 2.57
1919 4265 1.542472 TCTTTGCGGTCGTAGTCATCA 59.458 47.619 0.00 0.00 0.00 3.07
1920 4266 2.186076 CTCTTTGCGGTCGTAGTCATC 58.814 52.381 0.00 0.00 0.00 2.92
1921 4267 1.544691 ACTCTTTGCGGTCGTAGTCAT 59.455 47.619 0.00 0.00 0.00 3.06
1928 4280 1.156736 ATTTCCACTCTTTGCGGTCG 58.843 50.000 0.00 0.00 0.00 4.79
1957 4309 6.770303 TCCAAATATGTCTGAAGTGTCAACAA 59.230 34.615 0.00 0.00 32.37 2.83
1964 4316 4.878397 GTCCCTCCAAATATGTCTGAAGTG 59.122 45.833 0.00 0.00 0.00 3.16
2124 4477 3.591196 AGACTGCAGATCACTGACTTC 57.409 47.619 23.35 2.85 46.03 3.01
2234 4597 2.348498 CGGCGGTTTCATATTGATGTCG 60.348 50.000 0.00 0.00 34.41 4.35
2429 4792 8.976353 TCAATAAAATGCTTATGCTTTTCCCTA 58.024 29.630 12.85 5.21 42.97 3.53
2600 4963 7.463544 TGTTCTGCTCGTGACATTTTATATTG 58.536 34.615 0.00 0.00 0.00 1.90
2674 5037 1.886542 GCCTACCTGAACAAAACCCAG 59.113 52.381 0.00 0.00 0.00 4.45
2726 5089 1.003003 TCCATCGCTTCATGAACACCA 59.997 47.619 3.38 0.00 0.00 4.17
2821 5184 2.731341 GCTATATAGTAGTGGCGCACCG 60.731 54.545 10.83 0.00 39.70 4.94
2933 5314 3.759086 TGGTGCGCCATTAGTATTTTTGA 59.241 39.130 16.89 0.00 40.46 2.69
2984 5365 2.031157 GTGACTGGTGCACCATTACAAC 60.031 50.000 37.66 24.71 46.46 3.32
2986 5367 1.890876 GTGACTGGTGCACCATTACA 58.109 50.000 37.66 30.26 46.46 2.41
3127 5528 2.183679 GGAGAGAATGGAGTGTGGACT 58.816 52.381 0.00 0.00 33.98 3.85
3128 5529 1.902508 TGGAGAGAATGGAGTGTGGAC 59.097 52.381 0.00 0.00 0.00 4.02
3132 5533 2.183679 GAGGTGGAGAGAATGGAGTGT 58.816 52.381 0.00 0.00 0.00 3.55
3137 5538 1.127343 GGAGGAGGTGGAGAGAATGG 58.873 60.000 0.00 0.00 0.00 3.16
3166 5568 2.012824 TAGGAGGAGGCAGCCGAGAT 62.013 60.000 5.55 0.00 0.00 2.75
3185 5587 2.592102 ATGGTGCAAATGAGGTGAGT 57.408 45.000 0.00 0.00 0.00 3.41
3294 5701 1.822186 GTGCACGTTGTTGGAGGGT 60.822 57.895 0.00 0.00 0.00 4.34
3317 5724 5.555966 AGATCTAGCTAGGCCATAAAAAGC 58.444 41.667 20.58 3.73 0.00 3.51
3349 5756 3.735240 CACAAACATATGCAACACCACAC 59.265 43.478 1.58 0.00 0.00 3.82
3358 5783 2.363359 TGCAACACCACAAACATATGCA 59.637 40.909 1.58 0.00 39.95 3.96
3359 5784 3.023946 TGCAACACCACAAACATATGC 57.976 42.857 1.58 0.00 0.00 3.14
3360 5785 8.136800 ACATATATGCAACACCACAAACATATG 58.863 33.333 12.79 0.00 33.84 1.78
3361 5786 8.236585 ACATATATGCAACACCACAAACATAT 57.763 30.769 12.79 0.00 35.50 1.78
3362 5787 7.637631 ACATATATGCAACACCACAAACATA 57.362 32.000 12.79 0.00 0.00 2.29
3363 5788 6.528537 ACATATATGCAACACCACAAACAT 57.471 33.333 12.79 0.00 0.00 2.71
3364 5789 5.973899 ACATATATGCAACACCACAAACA 57.026 34.783 12.79 0.00 0.00 2.83
3365 5790 6.644592 ACAAACATATATGCAACACCACAAAC 59.355 34.615 12.79 0.00 0.00 2.93
3366 5791 6.644181 CACAAACATATATGCAACACCACAAA 59.356 34.615 12.79 0.00 0.00 2.83
3367 5792 6.155136 CACAAACATATATGCAACACCACAA 58.845 36.000 12.79 0.00 0.00 3.33
3368 5793 5.242615 ACACAAACATATATGCAACACCACA 59.757 36.000 12.79 0.00 0.00 4.17
3369 5794 5.708948 ACACAAACATATATGCAACACCAC 58.291 37.500 12.79 0.00 0.00 4.16
3370 5795 5.973899 ACACAAACATATATGCAACACCA 57.026 34.783 12.79 0.00 0.00 4.17
3404 5829 5.356751 TGGCAACTATCGCATTTCAAATACT 59.643 36.000 0.00 0.00 37.61 2.12
3566 5993 2.016393 ATCGTGCGGACCATGATCGT 62.016 55.000 0.00 0.00 44.92 3.73
3570 5997 1.153647 GTCATCGTGCGGACCATGA 60.154 57.895 13.01 13.01 43.28 3.07
3670 6097 0.610174 TCCTCAGCTTGCATCTTCGT 59.390 50.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.