Multiple sequence alignment - TraesCS7D01G467700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G467700 chr7D 100.000 3277 0 0 1 3277 581038688 581041964 0.000000e+00 6052.0
1 TraesCS7D01G467700 chr7D 82.654 1643 201 44 975 2566 581086314 581087923 0.000000e+00 1378.0
2 TraesCS7D01G467700 chr7D 78.903 1185 185 36 1146 2277 581271608 581272780 0.000000e+00 743.0
3 TraesCS7D01G467700 chr7D 78.362 1160 188 30 1177 2281 548608965 548610116 0.000000e+00 693.0
4 TraesCS7D01G467700 chr7D 77.643 1154 187 32 1177 2271 548617139 548618280 1.280000e-178 636.0
5 TraesCS7D01G467700 chr7D 73.684 1197 229 55 1122 2272 580756824 580757980 1.430000e-103 387.0
6 TraesCS7D01G467700 chr7D 83.871 403 49 9 2642 3042 581088582 581088970 1.440000e-98 370.0
7 TraesCS7D01G467700 chr7D 72.081 1182 257 45 1119 2259 580763592 580764741 1.490000e-73 287.0
8 TraesCS7D01G467700 chr7D 85.590 229 27 4 1122 1350 580741866 580742088 5.470000e-58 235.0
9 TraesCS7D01G467700 chr7D 77.322 366 64 14 1912 2259 562629380 562629016 7.170000e-47 198.0
10 TraesCS7D01G467700 chr7D 85.906 149 19 1 3092 3238 197927009 197927157 1.220000e-34 158.0
11 TraesCS7D01G467700 chr7D 85.714 126 16 1 3092 3215 42644593 42644718 7.380000e-27 132.0
12 TraesCS7D01G467700 chr7A 87.040 1929 176 29 1117 2983 672950156 672952072 0.000000e+00 2109.0
13 TraesCS7D01G467700 chr7A 82.074 1601 170 55 1368 2904 673013207 673014754 0.000000e+00 1258.0
14 TraesCS7D01G467700 chr7A 86.989 538 54 7 126 661 672945321 672945844 2.820000e-165 592.0
15 TraesCS7D01G467700 chr7A 75.128 1174 192 52 1142 2256 673993696 673994828 2.980000e-125 459.0
16 TraesCS7D01G467700 chr7A 88.017 242 21 7 769 1006 672949650 672949887 2.490000e-71 279.0
17 TraesCS7D01G467700 chr7A 78.670 361 60 13 1912 2259 648273300 648272944 1.180000e-54 224.0
18 TraesCS7D01G467700 chr7A 77.500 360 66 12 1912 2259 673306183 673306539 5.540000e-48 202.0
19 TraesCS7D01G467700 chr7A 95.455 110 5 0 3168 3277 673014800 673014909 3.360000e-40 176.0
20 TraesCS7D01G467700 chr7A 85.906 149 19 1 3092 3238 206959860 206960008 1.220000e-34 158.0
21 TraesCS7D01G467700 chr7A 92.857 56 4 0 1 56 706483345 706483400 7.540000e-12 82.4
22 TraesCS7D01G467700 chr7A 91.304 46 4 0 1541 1586 79810878 79810833 2.730000e-06 63.9
23 TraesCS7D01G467700 chr7B 75.980 816 112 54 1514 2282 648905329 648906107 8.710000e-91 344.0
24 TraesCS7D01G467700 chr7B 72.781 1183 241 49 1122 2259 648378550 648379696 3.150000e-85 326.0
25 TraesCS7D01G467700 chr7B 82.133 375 57 8 1146 1511 648904754 648905127 2.450000e-81 313.0
26 TraesCS7D01G467700 chr7B 76.835 613 92 25 1187 1753 724982606 724981998 1.910000e-77 300.0
27 TraesCS7D01G467700 chr7B 95.349 43 2 0 14 56 59235525 59235567 5.870000e-08 69.4
28 TraesCS7D01G467700 chr7B 72.398 221 52 8 1442 1659 21935890 21935676 9.820000e-06 62.1
29 TraesCS7D01G467700 chrUn 80.475 379 65 8 1905 2280 87735027 87735399 6.920000e-72 281.0
30 TraesCS7D01G467700 chrUn 97.674 43 1 0 14 56 327383155 327383197 1.260000e-09 75.0
31 TraesCS7D01G467700 chr3D 91.275 149 11 1 3092 3238 67480968 67481116 5.540000e-48 202.0
32 TraesCS7D01G467700 chr3D 97.674 43 1 0 14 56 579612132 579612174 1.260000e-09 75.0
33 TraesCS7D01G467700 chr3B 88.028 142 16 1 3102 3242 20052355 20052496 2.020000e-37 167.0
34 TraesCS7D01G467700 chr2D 87.413 143 16 1 3101 3241 122864121 122864263 2.620000e-36 163.0
35 TraesCS7D01G467700 chr4A 85.526 152 20 1 3092 3241 460230800 460230649 1.220000e-34 158.0
36 TraesCS7D01G467700 chr1D 85.430 151 21 1 3092 3241 7349705 7349855 4.380000e-34 156.0
37 TraesCS7D01G467700 chr1D 95.349 43 2 0 14 56 417546322 417546364 5.870000e-08 69.4
38 TraesCS7D01G467700 chr2B 84.967 153 19 3 3092 3241 714733117 714733268 5.660000e-33 152.0
39 TraesCS7D01G467700 chr5B 97.674 43 1 0 14 56 133645468 133645510 1.260000e-09 75.0
40 TraesCS7D01G467700 chr5A 97.674 43 1 0 14 56 526048858 526048816 1.260000e-09 75.0
41 TraesCS7D01G467700 chr6D 97.436 39 1 0 18 56 37431693 37431731 2.110000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G467700 chr7D 581038688 581041964 3276 False 6052.000000 6052 100.000000 1 3277 1 chr7D.!!$F8 3276
1 TraesCS7D01G467700 chr7D 581086314 581088970 2656 False 874.000000 1378 83.262500 975 3042 2 chr7D.!!$F10 2067
2 TraesCS7D01G467700 chr7D 581271608 581272780 1172 False 743.000000 743 78.903000 1146 2277 1 chr7D.!!$F9 1131
3 TraesCS7D01G467700 chr7D 548608965 548610116 1151 False 693.000000 693 78.362000 1177 2281 1 chr7D.!!$F3 1104
4 TraesCS7D01G467700 chr7D 548617139 548618280 1141 False 636.000000 636 77.643000 1177 2271 1 chr7D.!!$F4 1094
5 TraesCS7D01G467700 chr7D 580756824 580757980 1156 False 387.000000 387 73.684000 1122 2272 1 chr7D.!!$F6 1150
6 TraesCS7D01G467700 chr7D 580763592 580764741 1149 False 287.000000 287 72.081000 1119 2259 1 chr7D.!!$F7 1140
7 TraesCS7D01G467700 chr7A 672945321 672952072 6751 False 993.333333 2109 87.348667 126 2983 3 chr7A.!!$F5 2857
8 TraesCS7D01G467700 chr7A 673013207 673014909 1702 False 717.000000 1258 88.764500 1368 3277 2 chr7A.!!$F6 1909
9 TraesCS7D01G467700 chr7A 673993696 673994828 1132 False 459.000000 459 75.128000 1142 2256 1 chr7A.!!$F3 1114
10 TraesCS7D01G467700 chr7B 648904754 648906107 1353 False 328.500000 344 79.056500 1146 2282 2 chr7B.!!$F3 1136
11 TraesCS7D01G467700 chr7B 648378550 648379696 1146 False 326.000000 326 72.781000 1122 2259 1 chr7B.!!$F2 1137
12 TraesCS7D01G467700 chr7B 724981998 724982606 608 True 300.000000 300 76.835000 1187 1753 1 chr7B.!!$R2 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 264 0.031857 TGGAAAATGTGGCTTGCACG 59.968 50.0 0.0 0.0 0.0 5.34 F
1058 4775 0.179097 GACCGCACTCCATCTCCTTC 60.179 60.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1066 4783 0.103755 TGATGACGAGGATGCTCAGC 59.896 55.0 15.10 5.76 0.00 4.26 R
2754 7621 0.038067 GCTGGATTGTGCATGCAACA 60.038 50.0 24.58 19.31 31.82 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.576750 TGTTTTCGTGTCATCTAGATTGTAC 57.423 36.000 1.33 2.78 0.00 2.90
26 27 7.149307 TGTTTTCGTGTCATCTAGATTGTACA 58.851 34.615 1.33 5.43 0.00 2.90
27 28 7.654116 TGTTTTCGTGTCATCTAGATTGTACAA 59.346 33.333 11.41 11.41 0.00 2.41
28 29 8.492748 GTTTTCGTGTCATCTAGATTGTACAAA 58.507 33.333 13.23 0.00 0.00 2.83
29 30 8.596271 TTTCGTGTCATCTAGATTGTACAAAA 57.404 30.769 13.23 4.46 0.00 2.44
30 31 8.771920 TTCGTGTCATCTAGATTGTACAAAAT 57.228 30.769 13.23 6.77 0.00 1.82
31 32 9.863845 TTCGTGTCATCTAGATTGTACAAAATA 57.136 29.630 13.23 7.58 0.00 1.40
72 73 9.720769 ATGCAATTTTTCATTTTTCTCATCTCT 57.279 25.926 0.00 0.00 0.00 3.10
73 74 9.550406 TGCAATTTTTCATTTTTCTCATCTCTT 57.450 25.926 0.00 0.00 0.00 2.85
118 119 7.961325 AAAACATACAAAATTGTCCATCACC 57.039 32.000 1.37 0.00 42.35 4.02
119 120 6.662865 AACATACAAAATTGTCCATCACCA 57.337 33.333 1.37 0.00 42.35 4.17
120 121 6.855763 ACATACAAAATTGTCCATCACCAT 57.144 33.333 1.37 0.00 42.35 3.55
121 122 7.243604 ACATACAAAATTGTCCATCACCATT 57.756 32.000 1.37 0.00 42.35 3.16
122 123 7.678837 ACATACAAAATTGTCCATCACCATTT 58.321 30.769 1.37 0.00 42.35 2.32
123 124 7.818930 ACATACAAAATTGTCCATCACCATTTC 59.181 33.333 1.37 0.00 42.35 2.17
124 125 6.423776 ACAAAATTGTCCATCACCATTTCT 57.576 33.333 0.00 0.00 36.50 2.52
263 264 0.031857 TGGAAAATGTGGCTTGCACG 59.968 50.000 0.00 0.00 0.00 5.34
264 265 1.284297 GGAAAATGTGGCTTGCACGC 61.284 55.000 6.64 6.64 0.00 5.34
266 267 2.348605 AAAATGTGGCTTGCACGCGT 62.349 50.000 5.58 5.58 0.00 6.01
267 268 1.511318 AAATGTGGCTTGCACGCGTA 61.511 50.000 13.44 0.00 0.00 4.42
273 274 0.444651 GGCTTGCACGCGTAACATTA 59.555 50.000 13.44 0.00 0.00 1.90
274 275 1.520368 GCTTGCACGCGTAACATTAC 58.480 50.000 13.44 2.42 0.00 1.89
276 277 2.346244 GCTTGCACGCGTAACATTACTA 59.654 45.455 13.44 0.00 0.00 1.82
279 280 2.918600 TGCACGCGTAACATTACTAGTG 59.081 45.455 13.44 15.88 39.46 2.74
300 301 4.030306 GTGAGCTACTACATTTGTCGTTCG 59.970 45.833 0.00 0.00 0.00 3.95
303 304 2.157834 ACTACATTTGTCGTTCGGCA 57.842 45.000 0.00 0.00 0.00 5.69
305 306 3.852286 ACTACATTTGTCGTTCGGCATA 58.148 40.909 0.00 0.00 0.00 3.14
306 307 4.439057 ACTACATTTGTCGTTCGGCATAT 58.561 39.130 0.00 0.00 0.00 1.78
307 308 4.873827 ACTACATTTGTCGTTCGGCATATT 59.126 37.500 0.00 0.00 0.00 1.28
308 309 4.014847 ACATTTGTCGTTCGGCATATTG 57.985 40.909 0.00 2.14 0.00 1.90
310 311 4.335315 ACATTTGTCGTTCGGCATATTGAT 59.665 37.500 0.00 0.00 0.00 2.57
311 312 4.955925 TTTGTCGTTCGGCATATTGATT 57.044 36.364 0.00 0.00 0.00 2.57
313 314 4.271590 TGTCGTTCGGCATATTGATTTG 57.728 40.909 0.00 0.00 0.00 2.32
314 315 3.935828 TGTCGTTCGGCATATTGATTTGA 59.064 39.130 0.00 0.00 0.00 2.69
315 316 4.201773 TGTCGTTCGGCATATTGATTTGAC 60.202 41.667 0.00 0.00 0.00 3.18
316 317 3.935828 TCGTTCGGCATATTGATTTGACA 59.064 39.130 0.00 0.00 0.00 3.58
317 318 4.393371 TCGTTCGGCATATTGATTTGACAA 59.607 37.500 0.00 0.00 0.00 3.18
318 319 4.730042 CGTTCGGCATATTGATTTGACAAG 59.270 41.667 0.00 0.00 33.22 3.16
319 320 5.447144 CGTTCGGCATATTGATTTGACAAGA 60.447 40.000 0.00 0.00 33.22 3.02
320 321 5.484173 TCGGCATATTGATTTGACAAGAC 57.516 39.130 0.00 0.00 33.22 3.01
345 346 1.869767 CTGGAGTTGGCGCATAGATTC 59.130 52.381 10.83 0.00 0.00 2.52
350 351 4.127171 GAGTTGGCGCATAGATTCCTTTA 58.873 43.478 10.83 0.00 0.00 1.85
359 360 5.453339 CGCATAGATTCCTTTAGGTTGAGGA 60.453 44.000 0.00 0.00 40.22 3.71
361 362 4.473477 AGATTCCTTTAGGTTGAGGACG 57.527 45.455 0.00 0.00 41.61 4.79
399 400 1.227249 TCCCTTGTTCAACTTCCCCA 58.773 50.000 0.00 0.00 0.00 4.96
407 408 2.286365 TCAACTTCCCCACAACATCC 57.714 50.000 0.00 0.00 0.00 3.51
408 409 1.780309 TCAACTTCCCCACAACATCCT 59.220 47.619 0.00 0.00 0.00 3.24
409 410 2.176798 TCAACTTCCCCACAACATCCTT 59.823 45.455 0.00 0.00 0.00 3.36
410 411 3.396276 TCAACTTCCCCACAACATCCTTA 59.604 43.478 0.00 0.00 0.00 2.69
418 419 4.344104 CCCACAACATCCTTACTTTCCAT 58.656 43.478 0.00 0.00 0.00 3.41
427 428 7.637511 ACATCCTTACTTTCCATCTCAAGAAT 58.362 34.615 0.00 0.00 0.00 2.40
433 434 5.874093 ACTTTCCATCTCAAGAATGACACT 58.126 37.500 0.00 0.00 0.00 3.55
450 451 2.167281 ACACTCTCACATCCAATCTCCG 59.833 50.000 0.00 0.00 0.00 4.63
451 452 2.167281 CACTCTCACATCCAATCTCCGT 59.833 50.000 0.00 0.00 0.00 4.69
452 453 3.381590 CACTCTCACATCCAATCTCCGTA 59.618 47.826 0.00 0.00 0.00 4.02
455 456 3.126831 CTCACATCCAATCTCCGTAAGC 58.873 50.000 0.00 0.00 0.00 3.09
468 469 3.215151 TCCGTAAGCCATGTTTGTTTCA 58.785 40.909 0.00 0.00 0.00 2.69
474 475 3.460103 AGCCATGTTTGTTTCAGCTTTG 58.540 40.909 0.00 0.00 0.00 2.77
477 478 4.053295 CCATGTTTGTTTCAGCTTTGGAG 58.947 43.478 0.00 0.00 0.00 3.86
485 486 5.869579 TGTTTCAGCTTTGGAGAGTAGATT 58.130 37.500 0.00 0.00 0.00 2.40
489 490 6.365970 TCAGCTTTGGAGAGTAGATTTCTT 57.634 37.500 0.00 0.00 0.00 2.52
495 496 7.819900 GCTTTGGAGAGTAGATTTCTTGTAAGA 59.180 37.037 0.00 0.00 0.00 2.10
519 521 8.720562 AGAAAAATCAAAAGTTGAACCAAACAG 58.279 29.630 0.00 0.00 43.95 3.16
525 527 6.978080 TCAAAAGTTGAACCAAACAGCTATTC 59.022 34.615 0.00 0.00 36.59 1.75
526 528 5.453567 AAGTTGAACCAAACAGCTATTCC 57.546 39.130 0.00 0.00 32.21 3.01
544 546 6.183360 GCTATTCCAAATCAGTTTTGCCAATG 60.183 38.462 0.00 0.00 42.85 2.82
580 582 1.879380 TCGGGTCATTTTCAGTGCAAG 59.121 47.619 0.00 0.00 0.00 4.01
582 584 2.605338 CGGGTCATTTTCAGTGCAAGTG 60.605 50.000 0.00 0.00 39.10 3.16
605 607 1.076332 GAAGCACGTCCACATGTACC 58.924 55.000 0.00 0.00 0.00 3.34
606 608 0.685097 AAGCACGTCCACATGTACCT 59.315 50.000 0.00 0.00 0.00 3.08
616 618 5.302360 GTCCACATGTACCTAAGTGACAAA 58.698 41.667 0.00 0.00 33.99 2.83
624 626 7.900782 TGTACCTAAGTGACAAAGCTTATTC 57.099 36.000 0.00 0.00 0.00 1.75
642 644 1.689984 TCTGCATCAACTTTGCCACA 58.310 45.000 0.00 0.00 39.39 4.17
643 645 1.610038 TCTGCATCAACTTTGCCACAG 59.390 47.619 0.00 0.00 39.39 3.66
649 651 1.677576 TCAACTTTGCCACAGAAGCTG 59.322 47.619 0.00 0.00 37.52 4.24
683 1176 6.888632 AGGTTGATCTGATATGATATTTGCCC 59.111 38.462 0.00 0.00 0.00 5.36
703 1196 6.306987 TGCCCCTAATTATTCTTTGATCTCC 58.693 40.000 0.00 0.00 0.00 3.71
737 1232 9.932207 AGTCAAAATCATCATAGAATTTTGCAA 57.068 25.926 12.58 0.00 40.20 4.08
744 1239 7.022979 TCATCATAGAATTTTGCAACAAGTCG 58.977 34.615 0.00 0.00 0.00 4.18
754 1249 2.053627 GCAACAAGTCGCCTTCAAATG 58.946 47.619 0.00 0.00 0.00 2.32
756 1251 3.705604 CAACAAGTCGCCTTCAAATGTT 58.294 40.909 0.00 0.00 0.00 2.71
774 1269 8.046107 TCAAATGTTTTTGAGGAACCATTTTCT 58.954 29.630 0.00 0.00 44.81 2.52
778 4478 9.710900 ATGTTTTTGAGGAACCATTTTCTAATC 57.289 29.630 0.00 0.00 0.00 1.75
815 4515 1.213182 TGCAAGGTGTGGGTTTCTGTA 59.787 47.619 0.00 0.00 0.00 2.74
820 4520 1.418637 GGTGTGGGTTTCTGTAGACCA 59.581 52.381 0.00 0.00 37.68 4.02
865 4565 3.701542 CTGTGACTCTTATGACTAGCCCA 59.298 47.826 0.00 0.00 0.00 5.36
902 4602 2.978018 GCCCAGCCTGTTAACGCAC 61.978 63.158 8.00 0.00 0.00 5.34
942 4642 1.366366 CACTCCCGTCGGTTTCACT 59.634 57.895 11.06 0.00 0.00 3.41
943 4643 0.666577 CACTCCCGTCGGTTTCACTC 60.667 60.000 11.06 0.00 0.00 3.51
948 4663 2.047560 GTCGGTTTCACTCCCCCG 60.048 66.667 0.00 0.00 41.75 5.73
959 4674 1.529713 CTCCCCCGTCCTCTAGCTC 60.530 68.421 0.00 0.00 0.00 4.09
960 4675 2.279073 CCCCCGTCCTCTAGCTCA 59.721 66.667 0.00 0.00 0.00 4.26
961 4676 2.128507 CCCCCGTCCTCTAGCTCAC 61.129 68.421 0.00 0.00 0.00 3.51
962 4677 2.128507 CCCCGTCCTCTAGCTCACC 61.129 68.421 0.00 0.00 0.00 4.02
963 4678 2.482333 CCCGTCCTCTAGCTCACCG 61.482 68.421 0.00 0.00 0.00 4.94
964 4679 2.409651 CGTCCTCTAGCTCACCGC 59.590 66.667 0.00 0.00 39.57 5.68
965 4680 2.809010 GTCCTCTAGCTCACCGCC 59.191 66.667 0.00 0.00 40.39 6.13
966 4681 2.829003 TCCTCTAGCTCACCGCCG 60.829 66.667 0.00 0.00 40.39 6.46
967 4682 4.577246 CCTCTAGCTCACCGCCGC 62.577 72.222 0.00 0.00 40.39 6.53
968 4683 4.577246 CTCTAGCTCACCGCCGCC 62.577 72.222 0.00 0.00 40.39 6.13
1008 4725 4.802051 TCTTCCGCCATGGCCAGC 62.802 66.667 30.79 9.59 37.80 4.85
1058 4775 0.179097 GACCGCACTCCATCTCCTTC 60.179 60.000 0.00 0.00 0.00 3.46
1066 4783 1.683917 CTCCATCTCCTTCCAGGTACG 59.316 57.143 0.00 0.00 36.53 3.67
1067 4784 0.105039 CCATCTCCTTCCAGGTACGC 59.895 60.000 0.00 0.00 36.53 4.42
1076 4793 1.227380 CCAGGTACGCTGAGCATCC 60.227 63.158 4.88 3.25 0.00 3.51
1077 4794 1.680522 CCAGGTACGCTGAGCATCCT 61.681 60.000 4.88 5.74 0.00 3.24
1078 4795 0.249238 CAGGTACGCTGAGCATCCTC 60.249 60.000 4.88 0.00 38.62 3.71
1079 4796 1.299468 GGTACGCTGAGCATCCTCG 60.299 63.158 4.88 0.00 41.13 4.63
1103 4820 3.388149 TCAACATCAAACATCGCATCG 57.612 42.857 0.00 0.00 0.00 3.84
1112 4829 1.043816 ACATCGCATCGATTCCTCCT 58.956 50.000 0.00 0.00 44.59 3.69
1338 5250 2.713531 GAAGCTGCCCCAAACCCTCA 62.714 60.000 0.00 0.00 0.00 3.86
1365 5283 1.298859 CTTCCACGGTAGCAGCAACC 61.299 60.000 0.00 0.00 0.00 3.77
1409 5327 0.668706 CTGTCCTCTTCACCAGCGTG 60.669 60.000 0.00 0.00 41.72 5.34
1475 5402 2.353704 CCACCAGCAGTTCGATCTGTTA 60.354 50.000 21.39 0.00 37.70 2.41
1485 5412 2.095461 TCGATCTGTTAGACAGCTGCT 58.905 47.619 15.27 14.40 45.54 4.24
1512 5439 1.591703 CTCCTCTGCCGCTTGTACA 59.408 57.895 0.00 0.00 0.00 2.90
1604 5739 2.997897 GACTCCGGCCAGGACAGT 60.998 66.667 11.66 9.55 45.98 3.55
1712 5889 1.067142 GGAGTGGCAGTGTATTCGTCA 60.067 52.381 0.00 0.00 0.00 4.35
1790 5970 3.954200 TGAGCTTCAGCCATCATTTGTA 58.046 40.909 0.00 0.00 43.38 2.41
1901 6092 1.302832 CTTCAGTGTCCCTGGTGGC 60.303 63.158 0.00 0.00 41.83 5.01
1968 6168 5.633830 TGCCAATTTTCAGAGAGATGAAC 57.366 39.130 0.00 0.00 38.87 3.18
2150 6385 4.591321 ATTCTTCACTATTGGGCAGGAA 57.409 40.909 0.00 0.00 0.00 3.36
2187 6422 4.267928 GCTATAATATGGATCGTCGGCAAC 59.732 45.833 0.00 0.00 0.00 4.17
2218 6453 3.141398 TCTGCAATCTTGAAGGTGTCAC 58.859 45.455 0.00 0.00 35.39 3.67
2232 6467 1.227263 GTCACGCCGCCATATCTGT 60.227 57.895 0.00 0.00 0.00 3.41
2265 6500 3.526931 TGTATGCAGAGTTAGAGGCAC 57.473 47.619 0.00 0.00 39.34 5.01
2283 6518 2.592194 CACTGCACATTTGACATCAGC 58.408 47.619 0.00 0.00 0.00 4.26
2284 6519 2.030628 CACTGCACATTTGACATCAGCA 60.031 45.455 0.00 0.00 0.00 4.41
2298 6533 7.543947 TGACATCAGCAGTAGTTCATATTTG 57.456 36.000 0.00 0.00 0.00 2.32
2300 6535 6.418101 ACATCAGCAGTAGTTCATATTTGGT 58.582 36.000 0.00 0.00 0.00 3.67
2301 6536 6.540189 ACATCAGCAGTAGTTCATATTTGGTC 59.460 38.462 0.00 0.00 0.00 4.02
2302 6537 5.109210 TCAGCAGTAGTTCATATTTGGTCG 58.891 41.667 0.00 0.00 0.00 4.79
2303 6538 3.871594 AGCAGTAGTTCATATTTGGTCGC 59.128 43.478 0.00 0.00 0.00 5.19
2304 6539 3.621268 GCAGTAGTTCATATTTGGTCGCA 59.379 43.478 0.00 0.00 0.00 5.10
2316 6553 4.640789 TTTGGTCGCACTTTATGTTGTT 57.359 36.364 0.00 0.00 0.00 2.83
2354 6591 7.772166 TGTATACTATCAGTGGTTCTGTTCAG 58.228 38.462 4.17 0.00 43.97 3.02
2428 6669 9.689976 CTACTATGATCATTTAGTGAAGGACTG 57.310 37.037 14.65 0.00 40.97 3.51
2429 6670 6.989169 ACTATGATCATTTAGTGAAGGACTGC 59.011 38.462 14.65 0.00 40.97 4.40
2438 6679 8.680903 CATTTAGTGAAGGACTGCTCAATTATT 58.319 33.333 0.00 0.00 35.96 1.40
2440 6681 8.948631 TTAGTGAAGGACTGCTCAATTATTAG 57.051 34.615 0.00 0.00 35.96 1.73
2441 6682 6.352516 AGTGAAGGACTGCTCAATTATTAGG 58.647 40.000 0.00 0.00 31.75 2.69
2447 6688 5.532406 GGACTGCTCAATTATTAGGATGCAA 59.468 40.000 0.00 0.00 0.00 4.08
2465 6706 7.278868 AGGATGCAACTTAAACTTATCTCTTCG 59.721 37.037 0.00 0.00 0.00 3.79
2466 6707 7.277981 GGATGCAACTTAAACTTATCTCTTCGA 59.722 37.037 0.00 0.00 0.00 3.71
2472 6725 9.589111 AACTTAAACTTATCTCTTCGAGGAATC 57.411 33.333 0.00 0.00 0.00 2.52
2507 6760 1.279496 TGTTGCTGGCAGAGACCTAT 58.721 50.000 20.86 0.00 0.00 2.57
2509 6762 2.012673 GTTGCTGGCAGAGACCTATTG 58.987 52.381 20.86 0.00 0.00 1.90
2510 6763 0.107508 TGCTGGCAGAGACCTATTGC 60.108 55.000 20.86 0.00 37.11 3.56
2511 6764 0.179936 GCTGGCAGAGACCTATTGCT 59.820 55.000 20.86 0.00 37.93 3.91
2512 6765 1.407989 GCTGGCAGAGACCTATTGCTT 60.408 52.381 20.86 0.00 37.93 3.91
2523 6786 7.712639 CAGAGACCTATTGCTTTCTGCTAATAA 59.287 37.037 0.00 0.00 43.37 1.40
2566 6829 7.986085 ATCTTCGGTGCTAAATGCTAATTAT 57.014 32.000 0.00 0.00 43.37 1.28
2567 6830 7.189693 TCTTCGGTGCTAAATGCTAATTATG 57.810 36.000 0.00 0.00 43.37 1.90
2571 6834 5.519722 GGTGCTAAATGCTAATTATGCGTT 58.480 37.500 7.93 7.93 43.37 4.84
2573 6836 5.399301 GTGCTAAATGCTAATTATGCGTTGG 59.601 40.000 12.25 10.26 43.37 3.77
2574 6837 5.067153 TGCTAAATGCTAATTATGCGTTGGT 59.933 36.000 12.25 4.42 43.37 3.67
2609 7436 5.221244 GGAAAAGGTGTTAGCAGAACAACAT 60.221 40.000 18.47 6.85 40.18 2.71
2657 7516 2.807967 CAGAAATCCTGCTTGTTCGTCA 59.192 45.455 0.00 0.00 35.89 4.35
2671 7530 6.736853 GCTTGTTCGTCAGTACATTTATTCAC 59.263 38.462 0.00 0.00 0.00 3.18
2672 7531 7.570507 GCTTGTTCGTCAGTACATTTATTCACA 60.571 37.037 0.00 0.00 0.00 3.58
2678 7537 7.704899 TCGTCAGTACATTTATTCACATAGGTG 59.295 37.037 0.00 0.00 46.66 4.00
2681 7540 7.054124 CAGTACATTTATTCACATAGGTGGGT 58.946 38.462 7.81 0.00 45.32 4.51
2692 7551 8.943594 TTCACATAGGTGGGTTTAAAATAGTT 57.056 30.769 7.81 0.00 45.32 2.24
2717 7576 0.035056 ACTGCACTTCCCATGCTACC 60.035 55.000 0.00 0.00 43.77 3.18
2719 7578 1.819632 GCACTTCCCATGCTACCCG 60.820 63.158 0.00 0.00 40.08 5.28
2722 7581 1.198759 ACTTCCCATGCTACCCGTGT 61.199 55.000 0.00 0.00 0.00 4.49
2732 7599 5.297547 CATGCTACCCGTGTTGATAGTTAT 58.702 41.667 0.00 0.00 0.00 1.89
2761 7628 8.737168 ATGTCTGTAATGTACTAATGTTGCAT 57.263 30.769 0.00 0.00 0.00 3.96
2784 7651 3.214190 AATCCAGCCCAGTGCAGCA 62.214 57.895 0.00 0.00 44.83 4.41
2819 7686 2.892334 TTTTCTGACGCGGCTGTGC 61.892 57.895 15.80 0.00 0.00 4.57
2820 7687 4.600576 TTCTGACGCGGCTGTGCA 62.601 61.111 15.80 4.57 34.15 4.57
2863 7730 5.118990 GCTTCAGCTACCACATGATTTAGA 58.881 41.667 0.00 0.00 38.21 2.10
2864 7731 5.586243 GCTTCAGCTACCACATGATTTAGAA 59.414 40.000 0.00 0.00 38.21 2.10
2938 7805 0.682292 CGGCCTCCTCCCTATTTCTC 59.318 60.000 0.00 0.00 0.00 2.87
2985 7852 4.095782 TGTTGGCTGAACTGTTAACTTGAC 59.904 41.667 7.22 0.00 35.37 3.18
2988 7855 3.251004 GGCTGAACTGTTAACTTGACAGG 59.749 47.826 15.92 2.21 46.77 4.00
3024 7892 9.397280 CTAACTAGAAAGAATTTTCCTTAGGGG 57.603 37.037 0.00 0.00 42.99 4.79
3042 7911 8.368668 CCTTAGGGGTACTTATATTGTCTTCTG 58.631 40.741 0.00 0.00 0.00 3.02
3043 7912 6.176014 AGGGGTACTTATATTGTCTTCTGC 57.824 41.667 0.00 0.00 0.00 4.26
3044 7913 5.905913 AGGGGTACTTATATTGTCTTCTGCT 59.094 40.000 0.00 0.00 0.00 4.24
3045 7914 7.073854 AGGGGTACTTATATTGTCTTCTGCTA 58.926 38.462 0.00 0.00 0.00 3.49
3046 7915 7.735321 AGGGGTACTTATATTGTCTTCTGCTAT 59.265 37.037 0.00 0.00 0.00 2.97
3047 7916 8.376270 GGGGTACTTATATTGTCTTCTGCTATT 58.624 37.037 0.00 0.00 0.00 1.73
3048 7917 9.425577 GGGTACTTATATTGTCTTCTGCTATTC 57.574 37.037 0.00 0.00 0.00 1.75
3049 7918 9.982651 GGTACTTATATTGTCTTCTGCTATTCA 57.017 33.333 0.00 0.00 0.00 2.57
3052 7921 8.153550 ACTTATATTGTCTTCTGCTATTCAGGG 58.846 37.037 0.00 0.00 43.06 4.45
3053 7922 2.698855 TGTCTTCTGCTATTCAGGGC 57.301 50.000 0.00 0.00 43.06 5.19
3054 7923 2.191400 TGTCTTCTGCTATTCAGGGCT 58.809 47.619 0.00 0.00 43.06 5.19
3055 7924 2.093288 TGTCTTCTGCTATTCAGGGCTG 60.093 50.000 0.00 0.00 43.06 4.85
3056 7925 1.134280 TCTTCTGCTATTCAGGGCTGC 60.134 52.381 0.00 0.00 43.06 5.25
3057 7926 0.620030 TTCTGCTATTCAGGGCTGCA 59.380 50.000 0.50 0.00 43.06 4.41
3058 7927 0.841961 TCTGCTATTCAGGGCTGCAT 59.158 50.000 0.50 0.00 43.06 3.96
3059 7928 1.213678 TCTGCTATTCAGGGCTGCATT 59.786 47.619 0.50 0.00 43.06 3.56
3060 7929 2.029623 CTGCTATTCAGGGCTGCATTT 58.970 47.619 0.50 0.00 39.15 2.32
3061 7930 2.026641 TGCTATTCAGGGCTGCATTTC 58.973 47.619 0.50 0.00 0.00 2.17
3062 7931 2.026641 GCTATTCAGGGCTGCATTTCA 58.973 47.619 0.50 0.00 0.00 2.69
3063 7932 2.626743 GCTATTCAGGGCTGCATTTCAT 59.373 45.455 0.50 0.00 0.00 2.57
3064 7933 3.069158 GCTATTCAGGGCTGCATTTCATT 59.931 43.478 0.50 0.00 0.00 2.57
3065 7934 4.279169 GCTATTCAGGGCTGCATTTCATTA 59.721 41.667 0.50 0.00 0.00 1.90
3066 7935 5.047519 GCTATTCAGGGCTGCATTTCATTAT 60.048 40.000 0.50 0.00 0.00 1.28
3067 7936 5.881923 ATTCAGGGCTGCATTTCATTATT 57.118 34.783 0.50 0.00 0.00 1.40
3068 7937 5.680594 TTCAGGGCTGCATTTCATTATTT 57.319 34.783 0.50 0.00 0.00 1.40
3069 7938 5.013568 TCAGGGCTGCATTTCATTATTTG 57.986 39.130 0.50 0.00 0.00 2.32
3070 7939 3.558418 CAGGGCTGCATTTCATTATTTGC 59.442 43.478 0.50 0.00 35.67 3.68
3071 7940 2.874086 GGGCTGCATTTCATTATTTGCC 59.126 45.455 0.50 0.00 37.34 4.52
3072 7941 3.432608 GGGCTGCATTTCATTATTTGCCT 60.433 43.478 0.50 0.00 38.07 4.75
3073 7942 4.193865 GGCTGCATTTCATTATTTGCCTT 58.806 39.130 0.50 0.00 35.44 4.35
3074 7943 4.637091 GGCTGCATTTCATTATTTGCCTTT 59.363 37.500 0.50 0.00 35.44 3.11
3075 7944 5.124297 GGCTGCATTTCATTATTTGCCTTTT 59.876 36.000 0.50 0.00 35.44 2.27
3076 7945 6.025280 GCTGCATTTCATTATTTGCCTTTTG 58.975 36.000 0.00 0.00 34.20 2.44
3077 7946 6.497785 TGCATTTCATTATTTGCCTTTTGG 57.502 33.333 0.00 0.00 44.18 3.28
3078 7947 6.236409 TGCATTTCATTATTTGCCTTTTGGA 58.764 32.000 0.00 0.00 44.07 3.53
3079 7948 6.149142 TGCATTTCATTATTTGCCTTTTGGAC 59.851 34.615 0.00 0.00 44.07 4.02
3080 7949 6.372381 GCATTTCATTATTTGCCTTTTGGACT 59.628 34.615 0.00 0.00 44.07 3.85
3081 7950 7.413328 GCATTTCATTATTTGCCTTTTGGACTC 60.413 37.037 0.00 0.00 44.07 3.36
3082 7951 6.662865 TTCATTATTTGCCTTTTGGACTCA 57.337 33.333 0.00 0.00 44.07 3.41
3083 7952 6.855763 TCATTATTTGCCTTTTGGACTCAT 57.144 33.333 0.00 0.00 44.07 2.90
3084 7953 6.632909 TCATTATTTGCCTTTTGGACTCATG 58.367 36.000 0.00 0.00 44.07 3.07
3085 7954 3.967332 ATTTGCCTTTTGGACTCATGG 57.033 42.857 0.00 0.00 44.07 3.66
3086 7955 2.380064 TTGCCTTTTGGACTCATGGT 57.620 45.000 0.00 0.00 44.07 3.55
3087 7956 2.380064 TGCCTTTTGGACTCATGGTT 57.620 45.000 0.00 0.00 44.07 3.67
3088 7957 2.676748 TGCCTTTTGGACTCATGGTTT 58.323 42.857 0.00 0.00 44.07 3.27
3089 7958 3.037549 TGCCTTTTGGACTCATGGTTTT 58.962 40.909 0.00 0.00 44.07 2.43
3090 7959 4.219115 TGCCTTTTGGACTCATGGTTTTA 58.781 39.130 0.00 0.00 44.07 1.52
3091 7960 4.651503 TGCCTTTTGGACTCATGGTTTTAA 59.348 37.500 0.00 0.00 44.07 1.52
3092 7961 4.988540 GCCTTTTGGACTCATGGTTTTAAC 59.011 41.667 0.00 0.00 44.07 2.01
3093 7962 5.221441 GCCTTTTGGACTCATGGTTTTAACT 60.221 40.000 0.00 0.00 44.07 2.24
3094 7963 6.015772 GCCTTTTGGACTCATGGTTTTAACTA 60.016 38.462 0.00 0.00 44.07 2.24
3095 7964 7.368059 CCTTTTGGACTCATGGTTTTAACTAC 58.632 38.462 0.00 0.00 44.07 2.73
3096 7965 6.887626 TTTGGACTCATGGTTTTAACTACC 57.112 37.500 0.00 0.00 36.17 3.18
3106 7975 5.498393 TGGTTTTAACTACCACTGTTCACA 58.502 37.500 4.83 0.00 40.65 3.58
3107 7976 5.944599 TGGTTTTAACTACCACTGTTCACAA 59.055 36.000 4.83 0.00 40.65 3.33
3108 7977 6.603997 TGGTTTTAACTACCACTGTTCACAAT 59.396 34.615 4.83 0.00 40.65 2.71
3109 7978 7.122948 TGGTTTTAACTACCACTGTTCACAATT 59.877 33.333 4.83 0.00 40.65 2.32
3110 7979 8.623030 GGTTTTAACTACCACTGTTCACAATTA 58.377 33.333 1.85 0.00 35.67 1.40
3115 7984 7.611213 ACTACCACTGTTCACAATTATAAGC 57.389 36.000 0.00 0.00 0.00 3.09
3116 7985 7.394816 ACTACCACTGTTCACAATTATAAGCT 58.605 34.615 0.00 0.00 0.00 3.74
3117 7986 6.500684 ACCACTGTTCACAATTATAAGCTG 57.499 37.500 0.00 0.00 0.00 4.24
3118 7987 6.003950 ACCACTGTTCACAATTATAAGCTGT 58.996 36.000 0.00 0.00 0.00 4.40
3119 7988 6.490040 ACCACTGTTCACAATTATAAGCTGTT 59.510 34.615 0.00 0.00 0.00 3.16
3120 7989 7.014230 ACCACTGTTCACAATTATAAGCTGTTT 59.986 33.333 0.00 0.00 0.00 2.83
3121 7990 7.867403 CCACTGTTCACAATTATAAGCTGTTTT 59.133 33.333 0.00 0.00 0.00 2.43
3122 7991 8.693504 CACTGTTCACAATTATAAGCTGTTTTG 58.306 33.333 0.00 0.00 0.00 2.44
3123 7992 7.867403 ACTGTTCACAATTATAAGCTGTTTTGG 59.133 33.333 0.00 0.00 0.00 3.28
3124 7993 7.946207 TGTTCACAATTATAAGCTGTTTTGGA 58.054 30.769 0.00 0.00 0.00 3.53
3125 7994 8.584157 TGTTCACAATTATAAGCTGTTTTGGAT 58.416 29.630 0.00 0.00 0.00 3.41
3138 8007 7.729116 AGCTGTTTTGGATATTTCAATATGGG 58.271 34.615 0.00 0.00 31.96 4.00
3139 8008 6.424812 GCTGTTTTGGATATTTCAATATGGGC 59.575 38.462 0.00 0.00 31.96 5.36
3140 8009 7.673641 TGTTTTGGATATTTCAATATGGGCT 57.326 32.000 0.00 0.00 31.96 5.19
3141 8010 8.088463 TGTTTTGGATATTTCAATATGGGCTT 57.912 30.769 0.00 0.00 31.96 4.35
3142 8011 8.203485 TGTTTTGGATATTTCAATATGGGCTTC 58.797 33.333 0.00 0.00 31.96 3.86
3143 8012 7.911130 TTTGGATATTTCAATATGGGCTTCA 57.089 32.000 0.00 0.00 31.96 3.02
3144 8013 8.495160 TTTGGATATTTCAATATGGGCTTCAT 57.505 30.769 0.00 0.00 39.78 2.57
3145 8014 9.599056 TTTGGATATTTCAATATGGGCTTCATA 57.401 29.630 0.00 3.53 42.00 2.15
3147 8016 9.192642 TGGATATTTCAATATGGGCTTCATATG 57.807 33.333 11.76 0.00 45.54 1.78
3148 8017 8.636213 GGATATTTCAATATGGGCTTCATATGG 58.364 37.037 2.13 9.83 45.54 2.74
3149 8018 9.412460 GATATTTCAATATGGGCTTCATATGGA 57.588 33.333 2.13 11.47 45.54 3.41
3150 8019 6.899393 TTTCAATATGGGCTTCATATGGAC 57.101 37.500 13.51 0.00 44.38 4.02
3151 8020 5.848286 TCAATATGGGCTTCATATGGACT 57.152 39.130 2.13 0.00 45.54 3.85
3152 8021 5.563592 TCAATATGGGCTTCATATGGACTG 58.436 41.667 2.13 8.00 45.54 3.51
3153 8022 5.310331 TCAATATGGGCTTCATATGGACTGA 59.690 40.000 2.13 9.56 45.54 3.41
3154 8023 5.848286 ATATGGGCTTCATATGGACTGAA 57.152 39.130 2.13 0.00 44.82 3.02
3155 8024 4.524802 ATGGGCTTCATATGGACTGAAA 57.475 40.909 2.13 0.00 33.61 2.69
3156 8025 4.524802 TGGGCTTCATATGGACTGAAAT 57.475 40.909 2.13 0.00 32.53 2.17
3157 8026 4.209538 TGGGCTTCATATGGACTGAAATG 58.790 43.478 2.13 0.00 32.53 2.32
3158 8027 3.571401 GGGCTTCATATGGACTGAAATGG 59.429 47.826 2.13 0.00 32.53 3.16
3159 8028 3.571401 GGCTTCATATGGACTGAAATGGG 59.429 47.826 2.13 0.00 32.53 4.00
3160 8029 4.210331 GCTTCATATGGACTGAAATGGGT 58.790 43.478 2.13 0.00 32.53 4.51
3161 8030 4.037208 GCTTCATATGGACTGAAATGGGTG 59.963 45.833 2.13 0.00 32.53 4.61
3162 8031 3.554934 TCATATGGACTGAAATGGGTGC 58.445 45.455 2.13 0.00 0.00 5.01
3163 8032 3.053768 TCATATGGACTGAAATGGGTGCA 60.054 43.478 2.13 0.00 38.09 4.57
3164 8033 2.307496 ATGGACTGAAATGGGTGCAA 57.693 45.000 0.00 0.00 37.34 4.08
3165 8034 1.619654 TGGACTGAAATGGGTGCAAG 58.380 50.000 0.00 0.00 31.30 4.01
3166 8035 0.890683 GGACTGAAATGGGTGCAAGG 59.109 55.000 0.00 0.00 0.00 3.61
3215 8084 4.898488 CGAATCAGAAAAACGTCAGAACAC 59.102 41.667 0.00 0.00 0.00 3.32
3219 8088 5.421277 TCAGAAAAACGTCAGAACACCTTA 58.579 37.500 0.00 0.00 0.00 2.69
3273 8142 9.598517 TTTTACAATGAACATTTTCTTCTGCTT 57.401 25.926 0.00 0.00 32.36 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.654116 TGTACAATCTAGATGACACGAAAACAA 59.346 33.333 5.86 0.00 0.00 2.83
46 47 9.720769 AGAGATGAGAAAAATGAAAAATTGCAT 57.279 25.926 0.00 0.00 0.00 3.96
47 48 9.550406 AAGAGATGAGAAAAATGAAAAATTGCA 57.450 25.926 0.00 0.00 0.00 4.08
92 93 9.651913 GGTGATGGACAATTTTGTATGTTTTAT 57.348 29.630 0.00 0.00 42.43 1.40
93 94 8.642432 TGGTGATGGACAATTTTGTATGTTTTA 58.358 29.630 0.00 0.00 42.43 1.52
94 95 7.504403 TGGTGATGGACAATTTTGTATGTTTT 58.496 30.769 0.00 0.00 42.43 2.43
95 96 7.060383 TGGTGATGGACAATTTTGTATGTTT 57.940 32.000 0.00 0.00 42.43 2.83
96 97 6.662865 TGGTGATGGACAATTTTGTATGTT 57.337 33.333 0.00 0.00 42.43 2.71
97 98 6.855763 ATGGTGATGGACAATTTTGTATGT 57.144 33.333 0.00 0.00 42.43 2.29
98 99 8.036575 AGAAATGGTGATGGACAATTTTGTATG 58.963 33.333 0.00 0.00 42.43 2.39
99 100 8.137745 AGAAATGGTGATGGACAATTTTGTAT 57.862 30.769 0.00 0.00 42.43 2.29
100 101 7.537596 AGAAATGGTGATGGACAATTTTGTA 57.462 32.000 0.00 0.00 42.43 2.41
101 102 6.423776 AGAAATGGTGATGGACAATTTTGT 57.576 33.333 0.00 0.00 45.65 2.83
104 105 9.699410 TCTAATAGAAATGGTGATGGACAATTT 57.301 29.630 0.00 0.00 0.00 1.82
105 106 9.872684 ATCTAATAGAAATGGTGATGGACAATT 57.127 29.630 0.00 0.00 0.00 2.32
142 143 3.688694 ACAAAAAGTGCCATCATGCAT 57.311 38.095 0.00 0.00 44.30 3.96
242 243 2.094803 CGTGCAAGCCACATTTTCCATA 60.095 45.455 0.00 0.00 44.91 2.74
244 245 0.031857 CGTGCAAGCCACATTTTCCA 59.968 50.000 0.00 0.00 44.91 3.53
245 246 1.284297 GCGTGCAAGCCACATTTTCC 61.284 55.000 14.16 0.00 44.91 3.13
247 248 1.661197 CGCGTGCAAGCCACATTTT 60.661 52.632 19.11 0.00 44.91 1.82
263 264 5.819059 AGTAGCTCACTAGTAATGTTACGC 58.181 41.667 0.00 0.00 38.65 4.42
264 265 7.913423 TGTAGTAGCTCACTAGTAATGTTACG 58.087 38.462 0.00 0.00 40.48 3.18
267 268 9.587772 CAAATGTAGTAGCTCACTAGTAATGTT 57.412 33.333 0.00 0.00 40.48 2.71
273 274 5.415077 ACGACAAATGTAGTAGCTCACTAGT 59.585 40.000 0.00 0.00 40.48 2.57
274 275 5.881447 ACGACAAATGTAGTAGCTCACTAG 58.119 41.667 0.00 0.00 40.48 2.57
276 277 4.785511 ACGACAAATGTAGTAGCTCACT 57.214 40.909 0.00 0.00 41.62 3.41
279 280 3.546670 CCGAACGACAAATGTAGTAGCTC 59.453 47.826 0.00 0.00 32.75 4.09
291 292 4.393371 TCAAATCAATATGCCGAACGACAA 59.607 37.500 0.00 0.00 0.00 3.18
300 301 6.019318 GCAATGTCTTGTCAAATCAATATGCC 60.019 38.462 0.00 0.00 34.69 4.40
303 304 7.123098 TCCAGCAATGTCTTGTCAAATCAATAT 59.877 33.333 0.00 0.00 34.69 1.28
305 306 5.244402 TCCAGCAATGTCTTGTCAAATCAAT 59.756 36.000 0.00 0.00 34.69 2.57
306 307 4.583907 TCCAGCAATGTCTTGTCAAATCAA 59.416 37.500 0.00 0.00 34.69 2.57
307 308 4.143543 TCCAGCAATGTCTTGTCAAATCA 58.856 39.130 0.00 0.00 34.69 2.57
308 309 4.217118 ACTCCAGCAATGTCTTGTCAAATC 59.783 41.667 0.00 0.00 34.69 2.17
310 311 3.554934 ACTCCAGCAATGTCTTGTCAAA 58.445 40.909 0.00 0.00 34.69 2.69
311 312 3.213206 ACTCCAGCAATGTCTTGTCAA 57.787 42.857 0.00 0.00 34.69 3.18
313 314 2.227388 CCAACTCCAGCAATGTCTTGTC 59.773 50.000 0.00 0.00 34.69 3.18
314 315 2.233271 CCAACTCCAGCAATGTCTTGT 58.767 47.619 0.00 0.00 34.69 3.16
315 316 1.068055 GCCAACTCCAGCAATGTCTTG 60.068 52.381 0.00 0.00 35.36 3.02
316 317 1.251251 GCCAACTCCAGCAATGTCTT 58.749 50.000 0.00 0.00 0.00 3.01
317 318 0.957395 CGCCAACTCCAGCAATGTCT 60.957 55.000 0.00 0.00 0.00 3.41
318 319 1.503542 CGCCAACTCCAGCAATGTC 59.496 57.895 0.00 0.00 0.00 3.06
319 320 2.629656 GCGCCAACTCCAGCAATGT 61.630 57.895 0.00 0.00 0.00 2.71
320 321 1.940883 ATGCGCCAACTCCAGCAATG 61.941 55.000 4.18 0.00 43.19 2.82
345 346 1.900486 ACCTCGTCCTCAACCTAAAGG 59.100 52.381 0.00 0.00 42.17 3.11
350 351 1.645710 ATTCACCTCGTCCTCAACCT 58.354 50.000 0.00 0.00 0.00 3.50
359 360 5.163332 GGGAATTAAGGACTATTCACCTCGT 60.163 44.000 0.00 0.00 35.25 4.18
361 362 6.502074 AGGGAATTAAGGACTATTCACCTC 57.498 41.667 0.00 0.00 35.28 3.85
399 400 6.126863 TGAGATGGAAAGTAAGGATGTTGT 57.873 37.500 0.00 0.00 0.00 3.32
407 408 7.605691 AGTGTCATTCTTGAGATGGAAAGTAAG 59.394 37.037 0.00 0.00 30.85 2.34
408 409 7.453393 AGTGTCATTCTTGAGATGGAAAGTAA 58.547 34.615 0.00 0.00 30.85 2.24
409 410 7.009179 AGTGTCATTCTTGAGATGGAAAGTA 57.991 36.000 0.00 0.00 30.85 2.24
410 411 5.874093 AGTGTCATTCTTGAGATGGAAAGT 58.126 37.500 0.00 0.00 30.85 2.66
418 419 5.337089 GGATGTGAGAGTGTCATTCTTGAGA 60.337 44.000 0.00 0.00 37.56 3.27
427 428 3.196469 GGAGATTGGATGTGAGAGTGTCA 59.804 47.826 0.00 0.00 0.00 3.58
433 434 3.181475 GCTTACGGAGATTGGATGTGAGA 60.181 47.826 0.00 0.00 0.00 3.27
450 451 4.243007 AGCTGAAACAAACATGGCTTAC 57.757 40.909 0.00 0.00 0.00 2.34
451 452 4.935352 AAGCTGAAACAAACATGGCTTA 57.065 36.364 0.00 0.00 36.89 3.09
452 453 3.825143 AAGCTGAAACAAACATGGCTT 57.175 38.095 0.00 0.00 34.36 4.35
455 456 4.053295 CTCCAAAGCTGAAACAAACATGG 58.947 43.478 0.00 0.00 0.00 3.66
468 469 6.120507 ACAAGAAATCTACTCTCCAAAGCT 57.879 37.500 0.00 0.00 0.00 3.74
489 490 9.712305 TTGGTTCAACTTTTGATTTTTCTTACA 57.288 25.926 0.00 0.00 39.84 2.41
495 496 7.174772 AGCTGTTTGGTTCAACTTTTGATTTTT 59.825 29.630 0.00 0.00 39.84 1.94
505 506 4.469657 TGGAATAGCTGTTTGGTTCAACT 58.530 39.130 0.00 0.00 0.00 3.16
506 507 4.846779 TGGAATAGCTGTTTGGTTCAAC 57.153 40.909 0.00 0.00 0.00 3.18
508 509 5.538053 TGATTTGGAATAGCTGTTTGGTTCA 59.462 36.000 0.00 0.00 0.00 3.18
509 510 6.024552 TGATTTGGAATAGCTGTTTGGTTC 57.975 37.500 0.00 0.00 0.00 3.62
513 514 7.569957 GCAAAACTGATTTGGAATAGCTGTTTG 60.570 37.037 11.59 0.00 46.93 2.93
519 521 4.819769 TGGCAAAACTGATTTGGAATAGC 58.180 39.130 11.59 0.00 46.93 2.97
525 527 5.058490 ACTTCATTGGCAAAACTGATTTGG 58.942 37.500 3.01 0.00 46.93 3.28
526 528 6.258287 TCAACTTCATTGGCAAAACTGATTTG 59.742 34.615 3.01 10.14 42.84 2.32
544 546 4.695455 TGACCCGAATTCAGATTCAACTTC 59.305 41.667 6.22 0.00 41.43 3.01
582 584 1.672356 ATGTGGACGTGCTTCAGGC 60.672 57.895 8.99 0.00 42.22 4.85
593 595 4.530710 TGTCACTTAGGTACATGTGGAC 57.469 45.455 9.11 0.00 0.00 4.02
598 600 7.849804 ATAAGCTTTGTCACTTAGGTACATG 57.150 36.000 3.20 0.00 32.20 3.21
605 607 6.486253 TGCAGAATAAGCTTTGTCACTTAG 57.514 37.500 3.20 0.00 32.20 2.18
606 608 6.654582 TGATGCAGAATAAGCTTTGTCACTTA 59.345 34.615 3.20 0.00 33.17 2.24
616 618 4.381292 GGCAAAGTTGATGCAGAATAAGCT 60.381 41.667 2.16 0.00 45.60 3.74
624 626 1.610038 TCTGTGGCAAAGTTGATGCAG 59.390 47.619 4.24 0.00 45.60 4.41
642 644 4.016444 TCAACCTGTTTGTTTCAGCTTCT 58.984 39.130 0.00 0.00 36.49 2.85
643 645 4.370364 TCAACCTGTTTGTTTCAGCTTC 57.630 40.909 0.00 0.00 36.49 3.86
649 651 8.044060 TCATATCAGATCAACCTGTTTGTTTC 57.956 34.615 0.00 0.00 36.49 2.78
744 1239 4.511454 GGTTCCTCAAAAACATTTGAAGGC 59.489 41.667 5.61 0.00 40.07 4.35
815 4515 3.070015 CCAAATTGGAAAGCAAGTGGTCT 59.930 43.478 6.04 0.00 40.96 3.85
820 4520 3.037549 TGGACCAAATTGGAAAGCAAGT 58.962 40.909 20.25 0.00 40.96 3.16
923 4623 2.095978 AGTGAAACCGACGGGAGTGG 62.096 60.000 20.00 0.00 40.87 4.00
942 4642 2.314215 TGAGCTAGAGGACGGGGGA 61.314 63.158 0.00 0.00 0.00 4.81
943 4643 2.128507 GTGAGCTAGAGGACGGGGG 61.129 68.421 0.00 0.00 0.00 5.40
1035 4752 0.820871 GAGATGGAGTGCGGTCTTCT 59.179 55.000 0.00 0.00 0.00 2.85
1058 4775 1.227380 GGATGCTCAGCGTACCTGG 60.227 63.158 0.00 0.00 42.05 4.45
1066 4783 0.103755 TGATGACGAGGATGCTCAGC 59.896 55.000 15.10 5.76 0.00 4.26
1067 4784 2.200067 GTTGATGACGAGGATGCTCAG 58.800 52.381 15.10 9.45 0.00 3.35
1076 4793 4.571889 CGATGTTTGATGTTGATGACGAG 58.428 43.478 0.00 0.00 0.00 4.18
1077 4794 3.181521 GCGATGTTTGATGTTGATGACGA 60.182 43.478 0.00 0.00 0.00 4.20
1078 4795 3.093574 GCGATGTTTGATGTTGATGACG 58.906 45.455 0.00 0.00 0.00 4.35
1079 4796 4.082274 TGCGATGTTTGATGTTGATGAC 57.918 40.909 0.00 0.00 0.00 3.06
1103 4820 0.397254 TCGGAGGTGGAGGAGGAATC 60.397 60.000 0.00 0.00 0.00 2.52
1112 4829 2.758327 CACGGGATCGGAGGTGGA 60.758 66.667 0.00 0.00 41.39 4.02
1365 5283 3.827008 TTCCAGAATCCAATCCTCGAG 57.173 47.619 5.13 5.13 0.00 4.04
1475 5402 1.316706 GGAGACCGTAGCAGCTGTCT 61.317 60.000 16.64 12.57 40.60 3.41
1485 5412 1.076923 GGCAGAGGAGGAGACCGTA 60.077 63.158 0.00 0.00 34.73 4.02
1512 5439 1.006102 CAACCTCAGCCGAGACGTT 60.006 57.895 0.00 0.00 42.34 3.99
1604 5739 1.106351 AGCCCAAACATGCGTTGACA 61.106 50.000 10.53 0.00 34.86 3.58
1712 5889 2.447408 AAACCCAAACTCCGGTTTCT 57.553 45.000 0.00 0.00 47.00 2.52
1790 5970 6.699575 AAATGCAGATAGCCGTTAAGAAAT 57.300 33.333 0.00 0.00 44.83 2.17
1901 6092 5.764131 TGTTGAATAAAACCGTTAAGCAGG 58.236 37.500 0.00 0.00 0.00 4.85
2150 6385 8.432013 TCCATATTATAGCACATGAGTTTGAGT 58.568 33.333 0.00 0.00 0.00 3.41
2187 6422 5.874895 TCAAGATTGCAGATCACTTTGAG 57.125 39.130 10.26 0.00 0.00 3.02
2218 6453 1.929169 CATATGACAGATATGGCGGCG 59.071 52.381 0.51 0.51 0.00 6.46
2265 6500 2.863739 CTGCTGATGTCAAATGTGCAG 58.136 47.619 6.75 6.75 39.98 4.41
2283 6518 4.870426 AGTGCGACCAAATATGAACTACTG 59.130 41.667 0.00 0.00 0.00 2.74
2284 6519 5.086104 AGTGCGACCAAATATGAACTACT 57.914 39.130 0.00 0.00 0.00 2.57
2298 6533 3.959943 ACAAACAACATAAAGTGCGACC 58.040 40.909 0.00 0.00 0.00 4.79
2300 6535 5.994887 AGTACAAACAACATAAAGTGCGA 57.005 34.783 0.00 0.00 0.00 5.10
2301 6536 5.968848 ACAAGTACAAACAACATAAAGTGCG 59.031 36.000 0.00 0.00 0.00 5.34
2302 6537 7.749539 AACAAGTACAAACAACATAAAGTGC 57.250 32.000 0.00 0.00 0.00 4.40
2303 6538 9.567848 AGAAACAAGTACAAACAACATAAAGTG 57.432 29.630 0.00 0.00 0.00 3.16
2304 6539 9.567848 CAGAAACAAGTACAAACAACATAAAGT 57.432 29.630 0.00 0.00 0.00 2.66
2354 6591 0.807667 CGAGCACATGGAGGTAGCAC 60.808 60.000 0.00 0.00 0.00 4.40
2428 6669 9.237846 GTTTAAGTTGCATCCTAATAATTGAGC 57.762 33.333 0.00 0.00 0.00 4.26
2438 6679 9.601217 GAAGAGATAAGTTTAAGTTGCATCCTA 57.399 33.333 0.00 0.00 0.00 2.94
2440 6681 7.277981 TCGAAGAGATAAGTTTAAGTTGCATCC 59.722 37.037 0.00 0.00 0.00 3.51
2441 6682 8.186178 TCGAAGAGATAAGTTTAAGTTGCATC 57.814 34.615 0.00 0.00 0.00 3.91
2465 6706 6.597280 ACATGCTTCTAAAGTTCTGATTCCTC 59.403 38.462 0.00 0.00 0.00 3.71
2466 6707 6.479884 ACATGCTTCTAAAGTTCTGATTCCT 58.520 36.000 0.00 0.00 0.00 3.36
2496 6749 2.354199 GCAGAAAGCAATAGGTCTCTGC 59.646 50.000 7.16 7.16 44.79 4.26
2530 6793 6.707440 AGCACCGAAGATATGATCCTATAG 57.293 41.667 0.00 0.00 0.00 1.31
2532 6795 7.482169 TTTAGCACCGAAGATATGATCCTAT 57.518 36.000 0.00 0.00 0.00 2.57
2534 6797 5.808366 TTTAGCACCGAAGATATGATCCT 57.192 39.130 0.00 0.00 0.00 3.24
2657 7516 7.208064 ACCCACCTATGTGAATAAATGTACT 57.792 36.000 0.00 0.00 45.76 2.73
2671 7530 7.544217 GCACAAACTATTTTAAACCCACCTATG 59.456 37.037 0.00 0.00 0.00 2.23
2672 7531 7.233757 TGCACAAACTATTTTAAACCCACCTAT 59.766 33.333 0.00 0.00 0.00 2.57
2678 7537 5.176774 GCAGTGCACAAACTATTTTAAACCC 59.823 40.000 21.04 0.00 0.00 4.11
2717 7576 7.867909 ACAGACATCATATAACTATCAACACGG 59.132 37.037 0.00 0.00 0.00 4.94
2747 7614 5.036737 GGATTGTGCATGCAACATTAGTAC 58.963 41.667 24.58 7.10 0.00 2.73
2748 7615 4.704057 TGGATTGTGCATGCAACATTAGTA 59.296 37.500 24.58 7.87 28.41 1.82
2749 7616 3.510753 TGGATTGTGCATGCAACATTAGT 59.489 39.130 24.58 4.29 28.41 2.24
2750 7617 4.109766 CTGGATTGTGCATGCAACATTAG 58.890 43.478 24.58 14.53 31.82 1.73
2751 7618 3.676598 GCTGGATTGTGCATGCAACATTA 60.677 43.478 24.58 9.26 31.82 1.90
2752 7619 2.933492 GCTGGATTGTGCATGCAACATT 60.933 45.455 24.58 17.60 31.82 2.71
2753 7620 1.404986 GCTGGATTGTGCATGCAACAT 60.405 47.619 24.58 17.19 31.82 2.71
2754 7621 0.038067 GCTGGATTGTGCATGCAACA 60.038 50.000 24.58 19.31 31.82 3.33
2761 7628 1.604308 CACTGGGCTGGATTGTGCA 60.604 57.895 0.00 0.00 0.00 4.57
2784 7651 7.179410 GTCAGAAAACAAAATTCGCAAACAAT 58.821 30.769 0.00 0.00 32.04 2.71
2792 7659 2.400408 CCGCGTCAGAAAACAAAATTCG 59.600 45.455 4.92 0.00 32.04 3.34
2819 7686 0.734889 GAAACCGGAGCCATGACATG 59.265 55.000 9.46 8.56 0.00 3.21
2820 7687 0.327924 TGAAACCGGAGCCATGACAT 59.672 50.000 9.46 0.00 0.00 3.06
2855 7722 2.356125 GCAGGCTGACCCTTCTAAATCA 60.356 50.000 20.86 0.00 43.06 2.57
2857 7724 1.635487 TGCAGGCTGACCCTTCTAAAT 59.365 47.619 20.86 0.00 43.06 1.40
2863 7730 0.407139 AAGAATGCAGGCTGACCCTT 59.593 50.000 20.86 11.82 43.06 3.95
2915 7782 2.681273 AATAGGGAGGAGGCCGAGGG 62.681 65.000 0.00 0.00 0.00 4.30
2920 7787 0.682292 CGAGAAATAGGGAGGAGGCC 59.318 60.000 0.00 0.00 0.00 5.19
2922 7789 3.235200 ACATCGAGAAATAGGGAGGAGG 58.765 50.000 0.00 0.00 0.00 4.30
2938 7805 0.179156 GAGTGCATTGCCCAACATCG 60.179 55.000 6.12 0.00 0.00 3.84
2985 7852 7.106239 TCTTTCTAGTTAGAATTGAAGCCCTG 58.894 38.462 2.65 0.00 41.52 4.45
3019 7887 7.073854 AGCAGAAGACAATATAAGTACCCCTA 58.926 38.462 0.00 0.00 0.00 3.53
3022 7890 9.425577 GAATAGCAGAAGACAATATAAGTACCC 57.574 37.037 0.00 0.00 0.00 3.69
3042 7911 2.026641 TGAAATGCAGCCCTGAATAGC 58.973 47.619 0.00 0.00 0.00 2.97
3043 7912 4.931661 AATGAAATGCAGCCCTGAATAG 57.068 40.909 0.00 0.00 0.00 1.73
3044 7913 6.982160 AATAATGAAATGCAGCCCTGAATA 57.018 33.333 0.00 0.00 0.00 1.75
3045 7914 5.881923 AATAATGAAATGCAGCCCTGAAT 57.118 34.783 0.00 0.00 0.00 2.57
3046 7915 5.421277 CAAATAATGAAATGCAGCCCTGAA 58.579 37.500 0.00 0.00 0.00 3.02
3047 7916 4.681244 GCAAATAATGAAATGCAGCCCTGA 60.681 41.667 0.00 0.00 38.63 3.86
3048 7917 3.558418 GCAAATAATGAAATGCAGCCCTG 59.442 43.478 0.00 0.00 38.63 4.45
3049 7918 3.432608 GGCAAATAATGAAATGCAGCCCT 60.433 43.478 0.00 0.00 40.51 5.19
3050 7919 2.874086 GGCAAATAATGAAATGCAGCCC 59.126 45.455 0.00 0.00 40.51 5.19
3051 7920 3.800531 AGGCAAATAATGAAATGCAGCC 58.199 40.909 0.00 0.00 40.51 4.85
3052 7921 5.806366 AAAGGCAAATAATGAAATGCAGC 57.194 34.783 0.00 0.00 40.51 5.25
3053 7922 6.372103 TCCAAAAGGCAAATAATGAAATGCAG 59.628 34.615 0.00 0.00 40.51 4.41
3054 7923 6.149142 GTCCAAAAGGCAAATAATGAAATGCA 59.851 34.615 0.00 0.00 40.51 3.96
3055 7924 6.372381 AGTCCAAAAGGCAAATAATGAAATGC 59.628 34.615 0.00 0.00 38.06 3.56
3056 7925 7.603404 TGAGTCCAAAAGGCAAATAATGAAATG 59.397 33.333 0.00 0.00 0.00 2.32
3057 7926 7.678837 TGAGTCCAAAAGGCAAATAATGAAAT 58.321 30.769 0.00 0.00 0.00 2.17
3058 7927 7.060383 TGAGTCCAAAAGGCAAATAATGAAA 57.940 32.000 0.00 0.00 0.00 2.69
3059 7928 6.662865 TGAGTCCAAAAGGCAAATAATGAA 57.337 33.333 0.00 0.00 0.00 2.57
3060 7929 6.351202 CCATGAGTCCAAAAGGCAAATAATGA 60.351 38.462 0.00 0.00 0.00 2.57
3061 7930 5.813672 CCATGAGTCCAAAAGGCAAATAATG 59.186 40.000 0.00 0.00 0.00 1.90
3062 7931 5.484998 ACCATGAGTCCAAAAGGCAAATAAT 59.515 36.000 0.00 0.00 0.00 1.28
3063 7932 4.837860 ACCATGAGTCCAAAAGGCAAATAA 59.162 37.500 0.00 0.00 0.00 1.40
3064 7933 4.415596 ACCATGAGTCCAAAAGGCAAATA 58.584 39.130 0.00 0.00 0.00 1.40
3065 7934 3.242011 ACCATGAGTCCAAAAGGCAAAT 58.758 40.909 0.00 0.00 0.00 2.32
3066 7935 2.676748 ACCATGAGTCCAAAAGGCAAA 58.323 42.857 0.00 0.00 0.00 3.68
3067 7936 2.380064 ACCATGAGTCCAAAAGGCAA 57.620 45.000 0.00 0.00 0.00 4.52
3068 7937 2.380064 AACCATGAGTCCAAAAGGCA 57.620 45.000 0.00 0.00 0.00 4.75
3069 7938 3.751479 AAAACCATGAGTCCAAAAGGC 57.249 42.857 0.00 0.00 0.00 4.35
3070 7939 6.405278 AGTTAAAACCATGAGTCCAAAAGG 57.595 37.500 0.00 0.00 0.00 3.11
3071 7940 7.013846 TGGTAGTTAAAACCATGAGTCCAAAAG 59.986 37.037 6.81 0.00 42.10 2.27
3072 7941 6.834451 TGGTAGTTAAAACCATGAGTCCAAAA 59.166 34.615 6.81 0.00 42.10 2.44
3073 7942 6.366340 TGGTAGTTAAAACCATGAGTCCAAA 58.634 36.000 6.81 0.00 42.10 3.28
3074 7943 5.942961 TGGTAGTTAAAACCATGAGTCCAA 58.057 37.500 6.81 0.00 42.10 3.53
3075 7944 5.570205 TGGTAGTTAAAACCATGAGTCCA 57.430 39.130 6.81 0.00 42.10 4.02
3083 7952 5.498393 TGTGAACAGTGGTAGTTAAAACCA 58.502 37.500 6.81 6.81 44.75 3.67
3084 7953 6.439675 TTGTGAACAGTGGTAGTTAAAACC 57.560 37.500 0.00 1.96 37.53 3.27
3089 7958 9.158233 GCTTATAATTGTGAACAGTGGTAGTTA 57.842 33.333 0.00 0.00 0.00 2.24
3090 7959 7.883311 AGCTTATAATTGTGAACAGTGGTAGTT 59.117 33.333 0.00 0.00 0.00 2.24
3091 7960 7.334421 CAGCTTATAATTGTGAACAGTGGTAGT 59.666 37.037 0.00 0.00 0.00 2.73
3092 7961 7.334421 ACAGCTTATAATTGTGAACAGTGGTAG 59.666 37.037 0.00 0.00 0.00 3.18
3093 7962 7.165485 ACAGCTTATAATTGTGAACAGTGGTA 58.835 34.615 0.00 0.00 0.00 3.25
3094 7963 6.003950 ACAGCTTATAATTGTGAACAGTGGT 58.996 36.000 0.00 0.00 0.00 4.16
3095 7964 6.500684 ACAGCTTATAATTGTGAACAGTGG 57.499 37.500 0.00 0.00 0.00 4.00
3096 7965 8.693504 CAAAACAGCTTATAATTGTGAACAGTG 58.306 33.333 4.16 0.00 0.00 3.66
3097 7966 7.867403 CCAAAACAGCTTATAATTGTGAACAGT 59.133 33.333 4.16 0.00 0.00 3.55
3098 7967 8.081633 TCCAAAACAGCTTATAATTGTGAACAG 58.918 33.333 4.16 0.00 0.00 3.16
3099 7968 7.946207 TCCAAAACAGCTTATAATTGTGAACA 58.054 30.769 4.16 0.00 0.00 3.18
3100 7969 8.986477 ATCCAAAACAGCTTATAATTGTGAAC 57.014 30.769 4.16 0.00 0.00 3.18
3112 7981 8.206189 CCCATATTGAAATATCCAAAACAGCTT 58.794 33.333 0.00 0.00 29.35 3.74
3113 7982 7.687592 GCCCATATTGAAATATCCAAAACAGCT 60.688 37.037 0.00 0.00 29.35 4.24
3114 7983 6.424812 GCCCATATTGAAATATCCAAAACAGC 59.575 38.462 0.00 0.00 29.35 4.40
3115 7984 7.729116 AGCCCATATTGAAATATCCAAAACAG 58.271 34.615 0.00 0.00 29.35 3.16
3116 7985 7.673641 AGCCCATATTGAAATATCCAAAACA 57.326 32.000 0.00 0.00 29.35 2.83
3117 7986 8.203485 TGAAGCCCATATTGAAATATCCAAAAC 58.797 33.333 0.00 0.00 29.35 2.43
3118 7987 8.316497 TGAAGCCCATATTGAAATATCCAAAA 57.684 30.769 0.00 0.00 29.35 2.44
3119 7988 7.911130 TGAAGCCCATATTGAAATATCCAAA 57.089 32.000 0.00 0.00 29.35 3.28
3120 7989 9.772605 ATATGAAGCCCATATTGAAATATCCAA 57.227 29.630 4.00 0.00 43.97 3.53
3121 7990 9.192642 CATATGAAGCCCATATTGAAATATCCA 57.807 33.333 0.00 0.00 43.97 3.41
3122 7991 8.636213 CCATATGAAGCCCATATTGAAATATCC 58.364 37.037 3.65 0.00 43.97 2.59
3123 7992 9.412460 TCCATATGAAGCCCATATTGAAATATC 57.588 33.333 3.65 0.00 43.97 1.63
3124 7993 9.193806 GTCCATATGAAGCCCATATTGAAATAT 57.806 33.333 3.65 0.00 43.97 1.28
3125 7994 8.393259 AGTCCATATGAAGCCCATATTGAAATA 58.607 33.333 3.65 0.00 43.97 1.40
3126 7995 7.177921 CAGTCCATATGAAGCCCATATTGAAAT 59.822 37.037 3.65 3.37 43.97 2.17
3127 7996 6.491062 CAGTCCATATGAAGCCCATATTGAAA 59.509 38.462 3.65 0.00 43.97 2.69
3128 7997 6.005823 CAGTCCATATGAAGCCCATATTGAA 58.994 40.000 3.65 0.00 43.97 2.69
3129 7998 5.310331 TCAGTCCATATGAAGCCCATATTGA 59.690 40.000 3.65 6.48 43.97 2.57
3130 7999 5.563592 TCAGTCCATATGAAGCCCATATTG 58.436 41.667 3.65 4.62 43.97 1.90
3131 8000 5.848286 TCAGTCCATATGAAGCCCATATT 57.152 39.130 3.65 0.00 43.97 1.28
3132 8001 5.848286 TTCAGTCCATATGAAGCCCATAT 57.152 39.130 3.65 4.00 46.53 1.78
3133 8002 5.645056 TTTCAGTCCATATGAAGCCCATA 57.355 39.130 3.65 0.00 41.58 2.74
3134 8003 4.524802 TTTCAGTCCATATGAAGCCCAT 57.475 40.909 3.65 0.00 37.91 4.00
3135 8004 4.209538 CATTTCAGTCCATATGAAGCCCA 58.790 43.478 3.65 0.00 37.91 5.36
3136 8005 3.571401 CCATTTCAGTCCATATGAAGCCC 59.429 47.826 3.65 0.00 37.91 5.19
3137 8006 3.571401 CCCATTTCAGTCCATATGAAGCC 59.429 47.826 3.65 0.00 37.91 4.35
3138 8007 4.037208 CACCCATTTCAGTCCATATGAAGC 59.963 45.833 3.65 0.00 37.91 3.86
3139 8008 4.037208 GCACCCATTTCAGTCCATATGAAG 59.963 45.833 3.65 0.00 37.91 3.02
3140 8009 3.953612 GCACCCATTTCAGTCCATATGAA 59.046 43.478 3.65 0.00 34.93 2.57
3141 8010 3.053768 TGCACCCATTTCAGTCCATATGA 60.054 43.478 3.65 0.00 0.00 2.15
3142 8011 3.289836 TGCACCCATTTCAGTCCATATG 58.710 45.455 0.00 0.00 0.00 1.78
3143 8012 3.668141 TGCACCCATTTCAGTCCATAT 57.332 42.857 0.00 0.00 0.00 1.78
3144 8013 3.355378 CTTGCACCCATTTCAGTCCATA 58.645 45.455 0.00 0.00 0.00 2.74
3145 8014 2.173519 CTTGCACCCATTTCAGTCCAT 58.826 47.619 0.00 0.00 0.00 3.41
3146 8015 1.619654 CTTGCACCCATTTCAGTCCA 58.380 50.000 0.00 0.00 0.00 4.02
3147 8016 0.890683 CCTTGCACCCATTTCAGTCC 59.109 55.000 0.00 0.00 0.00 3.85
3148 8017 1.541588 GTCCTTGCACCCATTTCAGTC 59.458 52.381 0.00 0.00 0.00 3.51
3149 8018 1.133513 TGTCCTTGCACCCATTTCAGT 60.134 47.619 0.00 0.00 0.00 3.41
3150 8019 1.270550 GTGTCCTTGCACCCATTTCAG 59.729 52.381 0.00 0.00 33.53 3.02
3151 8020 1.133513 AGTGTCCTTGCACCCATTTCA 60.134 47.619 0.00 0.00 40.04 2.69
3152 8021 1.620822 AGTGTCCTTGCACCCATTTC 58.379 50.000 0.00 0.00 40.04 2.17
3153 8022 2.969821 TAGTGTCCTTGCACCCATTT 57.030 45.000 0.00 0.00 40.04 2.32
3154 8023 2.969821 TTAGTGTCCTTGCACCCATT 57.030 45.000 0.00 0.00 40.04 3.16
3155 8024 2.969821 TTTAGTGTCCTTGCACCCAT 57.030 45.000 0.00 0.00 40.04 4.00
3156 8025 2.738587 TTTTAGTGTCCTTGCACCCA 57.261 45.000 0.00 0.00 40.04 4.51
3157 8026 2.352715 GCATTTTAGTGTCCTTGCACCC 60.353 50.000 0.00 0.00 40.04 4.61
3158 8027 2.668279 CGCATTTTAGTGTCCTTGCACC 60.668 50.000 0.00 0.00 40.04 5.01
3159 8028 2.031157 ACGCATTTTAGTGTCCTTGCAC 60.031 45.455 0.00 0.00 39.51 4.57
3160 8029 2.225491 GACGCATTTTAGTGTCCTTGCA 59.775 45.455 0.00 0.00 41.85 4.08
3161 8030 2.851534 GACGCATTTTAGTGTCCTTGC 58.148 47.619 0.00 0.00 41.85 4.01
3166 8035 8.861101 GGATGTATATAGACGCATTTTAGTGTC 58.139 37.037 0.00 0.00 46.59 3.67
3249 8118 8.196771 ACAAGCAGAAGAAAATGTTCATTGTAA 58.803 29.630 0.00 0.00 36.09 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.