Multiple sequence alignment - TraesCS7D01G467600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G467600 chr7D 100.000 2727 0 0 1 2727 581023606 581020880 0.000000e+00 5036.0
1 TraesCS7D01G467600 chr7D 95.559 608 25 2 2122 2727 92803052 92802445 0.000000e+00 972.0
2 TraesCS7D01G467600 chr7D 94.901 608 29 2 2122 2727 634180717 634181324 0.000000e+00 950.0
3 TraesCS7D01G467600 chr7D 94.108 611 33 3 3 612 575750611 575750003 0.000000e+00 926.0
4 TraesCS7D01G467600 chr7D 93.042 618 37 6 3 616 475724102 475723487 0.000000e+00 898.0
5 TraesCS7D01G467600 chr7B 92.051 1170 67 11 617 1773 648705647 648704491 0.000000e+00 1622.0
6 TraesCS7D01G467600 chr7B 90.501 379 23 4 1697 2074 648695137 648694771 3.160000e-134 488.0
7 TraesCS7D01G467600 chr7B 89.446 379 26 6 957 1328 648710219 648709848 1.480000e-127 466.0
8 TraesCS7D01G467600 chr7B 89.326 356 24 5 617 959 648712434 648712080 4.170000e-118 435.0
9 TraesCS7D01G467600 chr7B 78.892 379 63 14 1336 1710 125243868 125243503 9.760000e-60 241.0
10 TraesCS7D01G467600 chr7B 78.628 379 64 14 1336 1710 125221079 125220714 4.540000e-58 235.0
11 TraesCS7D01G467600 chr7B 78.628 379 64 14 1336 1710 125280232 125279867 4.540000e-58 235.0
12 TraesCS7D01G467600 chr7B 81.768 181 17 4 1890 2069 648704416 648704251 1.320000e-28 137.0
13 TraesCS7D01G467600 chr1D 97.204 608 12 3 2122 2727 401719401 401720005 0.000000e+00 1024.0
14 TraesCS7D01G467600 chr1D 89.264 503 54 0 2225 2727 7883745 7884247 4.960000e-177 630.0
15 TraesCS7D01G467600 chr1D 81.505 319 44 13 1336 1651 7013882 7013576 5.830000e-62 248.0
16 TraesCS7D01G467600 chr2D 96.875 608 15 4 2122 2727 519333926 519333321 0.000000e+00 1014.0
17 TraesCS7D01G467600 chr2D 93.691 634 33 6 3 632 135598846 135598216 0.000000e+00 942.0
18 TraesCS7D01G467600 chr2D 95.833 48 1 1 2074 2120 24140589 24140542 2.910000e-10 76.8
19 TraesCS7D01G467600 chr7A 95.791 594 19 4 2134 2727 64837859 64837272 0.000000e+00 953.0
20 TraesCS7D01G467600 chr7A 93.827 486 30 0 1258 1743 672879465 672878980 0.000000e+00 732.0
21 TraesCS7D01G467600 chr7A 90.237 379 28 4 883 1255 672885187 672884812 1.140000e-133 486.0
22 TraesCS7D01G467600 chr7A 78.284 373 62 16 1336 1703 164393651 164393293 3.530000e-54 222.0
23 TraesCS7D01G467600 chr7A 93.985 133 4 1 757 885 672885479 672885347 5.960000e-47 198.0
24 TraesCS7D01G467600 chr7A 90.411 146 11 2 617 761 672890879 672890736 3.580000e-44 189.0
25 TraesCS7D01G467600 chr7A 94.000 50 1 1 2073 2120 46190649 46190600 1.050000e-09 75.0
26 TraesCS7D01G467600 chr3D 94.625 614 28 5 3 615 159574589 159575198 0.000000e+00 946.0
27 TraesCS7D01G467600 chr3D 93.994 616 32 5 1 614 228165741 228166353 0.000000e+00 928.0
28 TraesCS7D01G467600 chr4D 94.590 610 26 5 2122 2727 18739279 18739885 0.000000e+00 937.0
29 TraesCS7D01G467600 chr4A 95.278 593 24 4 2136 2727 635852333 635852922 0.000000e+00 937.0
30 TraesCS7D01G467600 chr4A 82.222 585 88 11 2156 2727 618130854 618131435 8.780000e-135 490.0
31 TraesCS7D01G467600 chr2A 94.572 608 30 3 2122 2727 529870893 529870287 0.000000e+00 937.0
32 TraesCS7D01G467600 chr2A 94.118 51 2 1 2071 2120 430950982 430950932 2.910000e-10 76.8
33 TraesCS7D01G467600 chr6D 94.399 607 33 1 2122 2727 283803184 283802578 0.000000e+00 931.0
34 TraesCS7D01G467600 chr6D 86.027 594 78 4 2134 2727 45411029 45411617 1.380000e-177 632.0
35 TraesCS7D01G467600 chr6D 80.503 318 49 11 1336 1651 6184030 6183724 5.870000e-57 231.0
36 TraesCS7D01G467600 chr3A 93.376 619 37 4 3 619 31562916 31562300 0.000000e+00 913.0
37 TraesCS7D01G467600 chr2B 93.065 620 38 5 3 620 561258106 561257490 0.000000e+00 902.0
38 TraesCS7D01G467600 chr5B 93.053 619 36 5 1 616 400552380 400551766 0.000000e+00 898.0
39 TraesCS7D01G467600 chr5D 92.777 623 36 8 3 623 506166244 506165629 0.000000e+00 893.0
40 TraesCS7D01G467600 chr5A 83.137 593 88 10 2138 2727 626369084 626369667 5.170000e-147 531.0
41 TraesCS7D01G467600 chr4B 80.325 676 106 14 2074 2727 280105095 280104425 1.140000e-133 486.0
42 TraesCS7D01G467600 chr6B 80.503 318 49 11 1336 1651 11470065 11469759 5.870000e-57 231.0
43 TraesCS7D01G467600 chr3B 95.745 47 1 1 2074 2120 187333719 187333764 1.050000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G467600 chr7D 581020880 581023606 2726 True 5036.0 5036 100.0000 1 2727 1 chr7D.!!$R4 2726
1 TraesCS7D01G467600 chr7D 92802445 92803052 607 True 972.0 972 95.5590 2122 2727 1 chr7D.!!$R1 605
2 TraesCS7D01G467600 chr7D 634180717 634181324 607 False 950.0 950 94.9010 2122 2727 1 chr7D.!!$F1 605
3 TraesCS7D01G467600 chr7D 575750003 575750611 608 True 926.0 926 94.1080 3 612 1 chr7D.!!$R3 609
4 TraesCS7D01G467600 chr7D 475723487 475724102 615 True 898.0 898 93.0420 3 616 1 chr7D.!!$R2 613
5 TraesCS7D01G467600 chr7B 648704251 648705647 1396 True 879.5 1622 86.9095 617 2069 2 chr7B.!!$R5 1452
6 TraesCS7D01G467600 chr7B 648709848 648712434 2586 True 450.5 466 89.3860 617 1328 2 chr7B.!!$R6 711
7 TraesCS7D01G467600 chr1D 401719401 401720005 604 False 1024.0 1024 97.2040 2122 2727 1 chr1D.!!$F2 605
8 TraesCS7D01G467600 chr1D 7883745 7884247 502 False 630.0 630 89.2640 2225 2727 1 chr1D.!!$F1 502
9 TraesCS7D01G467600 chr2D 519333321 519333926 605 True 1014.0 1014 96.8750 2122 2727 1 chr2D.!!$R3 605
10 TraesCS7D01G467600 chr2D 135598216 135598846 630 True 942.0 942 93.6910 3 632 1 chr2D.!!$R2 629
11 TraesCS7D01G467600 chr7A 64837272 64837859 587 True 953.0 953 95.7910 2134 2727 1 chr7A.!!$R2 593
12 TraesCS7D01G467600 chr7A 672884812 672885479 667 True 342.0 486 92.1110 757 1255 2 chr7A.!!$R6 498
13 TraesCS7D01G467600 chr3D 159574589 159575198 609 False 946.0 946 94.6250 3 615 1 chr3D.!!$F1 612
14 TraesCS7D01G467600 chr3D 228165741 228166353 612 False 928.0 928 93.9940 1 614 1 chr3D.!!$F2 613
15 TraesCS7D01G467600 chr4D 18739279 18739885 606 False 937.0 937 94.5900 2122 2727 1 chr4D.!!$F1 605
16 TraesCS7D01G467600 chr4A 635852333 635852922 589 False 937.0 937 95.2780 2136 2727 1 chr4A.!!$F2 591
17 TraesCS7D01G467600 chr4A 618130854 618131435 581 False 490.0 490 82.2220 2156 2727 1 chr4A.!!$F1 571
18 TraesCS7D01G467600 chr2A 529870287 529870893 606 True 937.0 937 94.5720 2122 2727 1 chr2A.!!$R2 605
19 TraesCS7D01G467600 chr6D 283802578 283803184 606 True 931.0 931 94.3990 2122 2727 1 chr6D.!!$R2 605
20 TraesCS7D01G467600 chr6D 45411029 45411617 588 False 632.0 632 86.0270 2134 2727 1 chr6D.!!$F1 593
21 TraesCS7D01G467600 chr3A 31562300 31562916 616 True 913.0 913 93.3760 3 619 1 chr3A.!!$R1 616
22 TraesCS7D01G467600 chr2B 561257490 561258106 616 True 902.0 902 93.0650 3 620 1 chr2B.!!$R1 617
23 TraesCS7D01G467600 chr5B 400551766 400552380 614 True 898.0 898 93.0530 1 616 1 chr5B.!!$R1 615
24 TraesCS7D01G467600 chr5D 506165629 506166244 615 True 893.0 893 92.7770 3 623 1 chr5D.!!$R1 620
25 TraesCS7D01G467600 chr5A 626369084 626369667 583 False 531.0 531 83.1370 2138 2727 1 chr5A.!!$F1 589
26 TraesCS7D01G467600 chr4B 280104425 280105095 670 True 486.0 486 80.3250 2074 2727 1 chr4B.!!$R1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 141 0.104672 TTGGGTGTGGGAGAGGAGAA 60.105 55.0 0.00 0.0 0.00 2.87 F
1546 3610 0.037326 TCAGGCTCAACGTGATCCAC 60.037 55.0 9.49 0.0 38.23 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 3789 0.110010 GCCTCTTGCTTGCTTTCGTC 60.11 55.000 0.0 0.0 36.87 4.20 R
2508 4627 2.000447 GTCCCAAACAGCGAGACATAC 59.00 52.381 0.0 0.0 0.00 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 141 0.104672 TTGGGTGTGGGAGAGGAGAA 60.105 55.000 0.00 0.00 0.00 2.87
205 214 2.292267 GCAGTTGCCATGTAGCACTAT 58.708 47.619 0.00 0.00 43.97 2.12
219 229 6.176896 TGTAGCACTATAAAAAGACATGGCA 58.823 36.000 0.00 0.00 0.00 4.92
243 253 7.382759 GCAAAAATAACATGTTCGGGTAAAGAA 59.617 33.333 15.85 0.00 0.00 2.52
330 341 1.922447 TGATAGCTTTGGGTGTGGGAT 59.078 47.619 0.00 0.00 0.00 3.85
380 392 3.902112 CCCACACACCAGCCCCTT 61.902 66.667 0.00 0.00 0.00 3.95
393 405 2.252260 CCCTTTGCGTGCGTTGAG 59.748 61.111 0.00 0.00 0.00 3.02
454 466 1.300620 CCTCTGCGTGTGGAAACGA 60.301 57.895 0.17 0.00 46.49 3.85
462 474 0.587985 GTGTGGAAACGAACGTGTGC 60.588 55.000 0.00 1.02 0.00 4.57
627 640 9.213819 GCGTTAGTATTTCCGTAATTAAAAAGG 57.786 33.333 0.00 0.00 0.00 3.11
682 696 6.613679 TGTTGACCTGGTAGATATGGATGTTA 59.386 38.462 0.00 0.00 0.00 2.41
738 753 5.995565 TCGGAATATCCTCGGAATTATGT 57.004 39.130 0.00 0.00 33.30 2.29
752 767 9.982651 CTCGGAATTATGTTCTATCTAGGAAAA 57.017 33.333 0.00 0.00 0.00 2.29
761 776 9.823647 ATGTTCTATCTAGGAAAATGTAGTGTG 57.176 33.333 0.00 0.00 0.00 3.82
769 784 8.521176 TCTAGGAAAATGTAGTGTGTCTAGTTC 58.479 37.037 0.00 0.00 0.00 3.01
866 885 7.434897 TGAAAAATCATAATTTAGCCATCGCAC 59.565 33.333 0.00 0.00 33.93 5.34
959 1148 2.751259 TGCTTCATTAGGAGCTTGCTTG 59.249 45.455 0.00 0.00 0.00 4.01
997 3049 2.417719 CTCCCAACTTACACAGACTGC 58.582 52.381 1.25 0.00 0.00 4.40
1012 3076 3.855352 CTGCCTATGCCGCTCCTCG 62.855 68.421 0.00 0.00 36.33 4.63
1015 3079 2.050895 CTATGCCGCTCCTCGTCG 60.051 66.667 0.00 0.00 36.19 5.12
1017 3081 2.718993 CTATGCCGCTCCTCGTCGTC 62.719 65.000 0.00 0.00 36.19 4.20
1020 3084 3.878519 CCGCTCCTCGTCGTCCTC 61.879 72.222 0.00 0.00 36.19 3.71
1022 3086 2.438795 GCTCCTCGTCGTCCTCCT 60.439 66.667 0.00 0.00 0.00 3.69
1023 3087 2.766400 GCTCCTCGTCGTCCTCCTG 61.766 68.421 0.00 0.00 0.00 3.86
1024 3088 2.045242 TCCTCGTCGTCCTCCTGG 60.045 66.667 0.00 0.00 0.00 4.45
1025 3089 3.827898 CCTCGTCGTCCTCCTGGC 61.828 72.222 0.00 0.00 0.00 4.85
1026 3090 3.062466 CTCGTCGTCCTCCTGGCA 61.062 66.667 0.00 0.00 0.00 4.92
1027 3091 2.362503 TCGTCGTCCTCCTGGCAT 60.363 61.111 0.00 0.00 0.00 4.40
1028 3092 1.949847 CTCGTCGTCCTCCTGGCATT 61.950 60.000 0.00 0.00 0.00 3.56
1029 3093 1.811266 CGTCGTCCTCCTGGCATTG 60.811 63.158 0.00 0.00 0.00 2.82
1030 3094 1.296715 GTCGTCCTCCTGGCATTGT 59.703 57.895 0.00 0.00 0.00 2.71
1092 3156 4.657824 ACCACCGGCTTCGTCACG 62.658 66.667 0.00 0.00 0.00 4.35
1149 3213 4.409218 TACGACGTGCCGCTGGAC 62.409 66.667 11.56 0.00 0.00 4.02
1209 3273 0.250295 TGTACTGCACTGACAAGCCC 60.250 55.000 0.00 0.00 0.00 5.19
1219 3283 1.306296 GACAAGCCCCATAGCCCAA 59.694 57.895 0.00 0.00 0.00 4.12
1253 3317 0.165944 CCACGAACAGAAATCCGCAC 59.834 55.000 0.00 0.00 0.00 5.34
1312 3376 6.870971 ATCCATACGCGGTATTAATTTGTT 57.129 33.333 12.47 0.00 0.00 2.83
1330 3394 0.803740 TTAATTAACCCGTGGCGCAC 59.196 50.000 10.83 4.68 0.00 5.34
1345 3409 0.517316 CGCACCAAAACTACAGCTCC 59.483 55.000 0.00 0.00 0.00 4.70
1460 3524 1.746727 GCTGATGCTGCACGTCTACG 61.747 60.000 3.57 0.04 39.81 3.51
1480 3544 2.884207 GGCGCGCTGGTGTACTAC 60.884 66.667 32.29 5.91 0.00 2.73
1481 3545 2.126228 GCGCGCTGGTGTACTACA 60.126 61.111 26.67 0.00 0.00 2.74
1517 3581 3.135457 TCGACCGCGGCATCTACA 61.135 61.111 28.58 0.00 38.28 2.74
1546 3610 0.037326 TCAGGCTCAACGTGATCCAC 60.037 55.000 9.49 0.00 38.23 4.02
1585 3649 1.674611 CGCTCACCGTGTTCATCGAC 61.675 60.000 0.00 0.00 0.00 4.20
1645 3709 2.163818 TGCACTACTTCAAGTTCGGG 57.836 50.000 0.00 0.00 0.00 5.14
1651 3715 3.836562 ACTACTTCAAGTTCGGGGTGTAT 59.163 43.478 0.00 0.00 0.00 2.29
1681 3745 2.669133 CCCCTCGCACCTCATGGAA 61.669 63.158 0.00 0.00 37.04 3.53
1687 3751 2.537560 GCACCTCATGGAATCGCGG 61.538 63.158 6.13 0.00 37.04 6.46
1720 3784 0.037447 GGCTCTTCACCAAGGAAGCT 59.963 55.000 0.00 0.00 43.14 3.74
1723 3787 2.744741 GCTCTTCACCAAGGAAGCTTAC 59.255 50.000 0.00 0.00 43.14 2.34
1725 3789 3.999663 CTCTTCACCAAGGAAGCTTACTG 59.000 47.826 13.23 2.83 43.14 2.74
1726 3790 3.646162 TCTTCACCAAGGAAGCTTACTGA 59.354 43.478 13.23 2.74 43.14 3.41
1727 3791 3.402628 TCACCAAGGAAGCTTACTGAC 57.597 47.619 13.23 0.00 0.00 3.51
1741 3805 1.953559 ACTGACGAAAGCAAGCAAGA 58.046 45.000 0.00 0.00 0.00 3.02
1763 3827 1.290203 CATAATGTTCAGCGAGCCGT 58.710 50.000 0.00 0.00 0.00 5.68
1769 3833 1.740296 TTCAGCGAGCCGTTTAGCC 60.740 57.895 0.00 0.00 0.00 3.93
1773 3837 2.033194 GCGAGCCGTTTAGCCAACT 61.033 57.895 0.00 0.00 32.53 3.16
1774 3838 0.738412 GCGAGCCGTTTAGCCAACTA 60.738 55.000 0.00 0.00 32.53 2.24
1775 3839 1.717194 CGAGCCGTTTAGCCAACTAA 58.283 50.000 0.00 0.00 36.57 2.24
1787 3851 6.509418 TTAGCCAACTAAACAGGCTTAATG 57.491 37.500 10.74 0.00 35.41 1.90
1788 3852 4.662278 AGCCAACTAAACAGGCTTAATGA 58.338 39.130 0.00 0.00 31.44 2.57
1789 3853 5.076873 AGCCAACTAAACAGGCTTAATGAA 58.923 37.500 0.00 0.00 31.44 2.57
1790 3854 5.716703 AGCCAACTAAACAGGCTTAATGAAT 59.283 36.000 0.00 0.00 31.44 2.57
1791 3855 6.211384 AGCCAACTAAACAGGCTTAATGAATT 59.789 34.615 0.00 0.00 31.44 2.17
1792 3856 6.311200 GCCAACTAAACAGGCTTAATGAATTG 59.689 38.462 0.00 0.00 0.00 2.32
1793 3857 7.378181 CCAACTAAACAGGCTTAATGAATTGT 58.622 34.615 0.00 0.00 0.00 2.71
1794 3858 8.519526 CCAACTAAACAGGCTTAATGAATTGTA 58.480 33.333 0.00 0.00 0.00 2.41
1795 3859 9.559958 CAACTAAACAGGCTTAATGAATTGTAG 57.440 33.333 0.00 0.00 0.00 2.74
1796 3860 8.863872 ACTAAACAGGCTTAATGAATTGTAGT 57.136 30.769 0.00 0.00 0.00 2.73
1797 3861 9.297037 ACTAAACAGGCTTAATGAATTGTAGTT 57.703 29.630 0.00 0.00 0.00 2.24
1798 3862 9.559958 CTAAACAGGCTTAATGAATTGTAGTTG 57.440 33.333 0.00 0.00 0.00 3.16
1799 3863 7.524717 AACAGGCTTAATGAATTGTAGTTGT 57.475 32.000 0.00 0.00 0.00 3.32
1800 3864 7.524717 ACAGGCTTAATGAATTGTAGTTGTT 57.475 32.000 0.00 0.00 0.00 2.83
1801 3865 7.951591 ACAGGCTTAATGAATTGTAGTTGTTT 58.048 30.769 0.00 0.00 0.00 2.83
1802 3866 8.421002 ACAGGCTTAATGAATTGTAGTTGTTTT 58.579 29.630 0.00 0.00 0.00 2.43
1803 3867 9.260002 CAGGCTTAATGAATTGTAGTTGTTTTT 57.740 29.630 0.00 0.00 0.00 1.94
1804 3868 9.476202 AGGCTTAATGAATTGTAGTTGTTTTTC 57.524 29.630 0.00 0.00 0.00 2.29
1805 3869 9.255304 GGCTTAATGAATTGTAGTTGTTTTTCA 57.745 29.630 0.00 0.00 0.00 2.69
1812 3876 9.528018 TGAATTGTAGTTGTTTTTCATTCCTTC 57.472 29.630 0.00 0.00 0.00 3.46
1813 3877 8.574196 AATTGTAGTTGTTTTTCATTCCTTCG 57.426 30.769 0.00 0.00 0.00 3.79
1814 3878 6.928979 TGTAGTTGTTTTTCATTCCTTCGA 57.071 33.333 0.00 0.00 0.00 3.71
1815 3879 6.954944 TGTAGTTGTTTTTCATTCCTTCGAG 58.045 36.000 0.00 0.00 0.00 4.04
1816 3880 4.860072 AGTTGTTTTTCATTCCTTCGAGC 58.140 39.130 0.00 0.00 0.00 5.03
1817 3881 4.338118 AGTTGTTTTTCATTCCTTCGAGCA 59.662 37.500 0.00 0.00 0.00 4.26
1818 3882 4.909696 TGTTTTTCATTCCTTCGAGCAA 57.090 36.364 0.00 0.00 0.00 3.91
1819 3883 4.606961 TGTTTTTCATTCCTTCGAGCAAC 58.393 39.130 0.00 0.00 0.00 4.17
1820 3884 4.097135 TGTTTTTCATTCCTTCGAGCAACA 59.903 37.500 0.00 0.00 0.00 3.33
1821 3885 5.221224 TGTTTTTCATTCCTTCGAGCAACAT 60.221 36.000 0.00 0.00 0.00 2.71
1822 3886 4.424061 TTTCATTCCTTCGAGCAACATG 57.576 40.909 0.00 0.00 0.00 3.21
1823 3887 3.057969 TCATTCCTTCGAGCAACATGT 57.942 42.857 0.00 0.00 0.00 3.21
1824 3888 3.411446 TCATTCCTTCGAGCAACATGTT 58.589 40.909 4.92 4.92 0.00 2.71
1825 3889 3.436704 TCATTCCTTCGAGCAACATGTTC 59.563 43.478 8.48 4.08 0.00 3.18
1826 3890 2.839486 TCCTTCGAGCAACATGTTCT 57.161 45.000 8.48 9.06 0.00 3.01
1827 3891 2.688507 TCCTTCGAGCAACATGTTCTC 58.311 47.619 8.48 15.98 0.00 2.87
1828 3892 2.300152 TCCTTCGAGCAACATGTTCTCT 59.700 45.455 23.56 17.63 0.00 3.10
1829 3893 2.670414 CCTTCGAGCAACATGTTCTCTC 59.330 50.000 23.56 21.84 0.00 3.20
1830 3894 2.370281 TCGAGCAACATGTTCTCTCC 57.630 50.000 23.56 12.44 0.00 3.71
1831 3895 0.994995 CGAGCAACATGTTCTCTCCG 59.005 55.000 23.56 17.29 0.00 4.63
1832 3896 1.402852 CGAGCAACATGTTCTCTCCGA 60.403 52.381 23.56 0.00 0.00 4.55
1852 3916 5.186992 TCCGATCCTGTTCTTAAAGATGTCA 59.813 40.000 0.00 0.00 0.00 3.58
1869 3933 0.105224 TCAGAGTTTTCGCCCGTCAA 59.895 50.000 0.00 0.00 0.00 3.18
1870 3934 0.941542 CAGAGTTTTCGCCCGTCAAA 59.058 50.000 0.00 0.00 0.00 2.69
1871 3935 1.069906 CAGAGTTTTCGCCCGTCAAAG 60.070 52.381 0.00 0.00 0.00 2.77
1872 3936 0.237498 GAGTTTTCGCCCGTCAAAGG 59.763 55.000 0.00 0.00 0.00 3.11
1873 3937 0.179040 AGTTTTCGCCCGTCAAAGGA 60.179 50.000 0.00 0.00 0.00 3.36
1874 3938 0.237498 GTTTTCGCCCGTCAAAGGAG 59.763 55.000 0.00 0.00 0.00 3.69
1875 3939 0.107081 TTTTCGCCCGTCAAAGGAGA 59.893 50.000 0.00 0.00 0.00 3.71
1877 3941 0.323629 TTCGCCCGTCAAAGGAGAAT 59.676 50.000 0.00 0.00 38.14 2.40
1878 3942 0.391130 TCGCCCGTCAAAGGAGAATG 60.391 55.000 0.00 0.00 29.47 2.67
1884 3948 3.189287 CCCGTCAAAGGAGAATGTCAAAG 59.811 47.826 0.00 0.00 0.00 2.77
1885 3949 3.815401 CCGTCAAAGGAGAATGTCAAAGT 59.185 43.478 0.00 0.00 0.00 2.66
1886 3950 4.275936 CCGTCAAAGGAGAATGTCAAAGTT 59.724 41.667 0.00 0.00 0.00 2.66
1887 3951 5.221048 CCGTCAAAGGAGAATGTCAAAGTTT 60.221 40.000 0.00 0.00 0.00 2.66
1888 3952 5.909610 CGTCAAAGGAGAATGTCAAAGTTTC 59.090 40.000 0.00 0.00 0.00 2.78
1893 3970 9.154847 CAAAGGAGAATGTCAAAGTTTCTTTTT 57.845 29.630 0.00 0.00 30.11 1.94
1908 3985 6.264518 AGTTTCTTTTTGTCCGTGATATTGGT 59.735 34.615 0.00 0.00 0.00 3.67
1909 3986 5.621197 TCTTTTTGTCCGTGATATTGGTG 57.379 39.130 0.00 0.00 0.00 4.17
1910 3987 4.457603 TCTTTTTGTCCGTGATATTGGTGG 59.542 41.667 0.00 0.00 0.00 4.61
1911 3988 2.411628 TTGTCCGTGATATTGGTGGG 57.588 50.000 0.00 0.00 0.00 4.61
1912 3989 0.544223 TGTCCGTGATATTGGTGGGG 59.456 55.000 0.00 0.00 0.00 4.96
1913 3990 0.818040 GTCCGTGATATTGGTGGGGC 60.818 60.000 0.00 0.00 0.00 5.80
1914 3991 1.528309 CCGTGATATTGGTGGGGCC 60.528 63.158 0.00 0.00 37.90 5.80
2001 4079 3.866582 CCGAGTGCCATCCTCCCC 61.867 72.222 0.00 0.00 0.00 4.81
2002 4080 4.227134 CGAGTGCCATCCTCCCCG 62.227 72.222 0.00 0.00 0.00 5.73
2003 4081 4.554036 GAGTGCCATCCTCCCCGC 62.554 72.222 0.00 0.00 0.00 6.13
2005 4083 4.864334 GTGCCATCCTCCCCGCAG 62.864 72.222 0.00 0.00 0.00 5.18
2007 4085 3.161450 GCCATCCTCCCCGCAGTA 61.161 66.667 0.00 0.00 0.00 2.74
2008 4086 2.822399 CCATCCTCCCCGCAGTAC 59.178 66.667 0.00 0.00 0.00 2.73
2009 4087 2.063979 CCATCCTCCCCGCAGTACA 61.064 63.158 0.00 0.00 0.00 2.90
2010 4088 1.443407 CATCCTCCCCGCAGTACAG 59.557 63.158 0.00 0.00 0.00 2.74
2011 4089 1.762460 ATCCTCCCCGCAGTACAGG 60.762 63.158 0.00 0.00 0.00 4.00
2020 4098 2.095263 CCCGCAGTACAGGAAAAACATG 60.095 50.000 0.00 0.00 36.29 3.21
2032 4110 1.153353 AAAACATGGTACGCCGAGTG 58.847 50.000 0.00 0.00 37.67 3.51
2038 4116 0.889994 TGGTACGCCGAGTGTATTGT 59.110 50.000 0.00 0.00 37.67 2.71
2039 4117 1.135315 TGGTACGCCGAGTGTATTGTC 60.135 52.381 0.00 0.00 37.67 3.18
2063 4141 6.375736 TCATATGCCAAGTGTAATTTTTCGGA 59.624 34.615 0.00 0.00 0.00 4.55
2064 4142 5.659440 ATGCCAAGTGTAATTTTTCGGAT 57.341 34.783 0.00 0.00 0.00 4.18
2069 4147 6.677187 GCCAAGTGTAATTTTTCGGATACTCC 60.677 42.308 0.00 0.00 0.00 3.85
2070 4148 6.373216 CCAAGTGTAATTTTTCGGATACTCCA 59.627 38.462 0.00 0.00 35.91 3.86
2071 4149 7.067008 CCAAGTGTAATTTTTCGGATACTCCAT 59.933 37.037 0.00 0.00 35.91 3.41
2072 4150 7.553881 AGTGTAATTTTTCGGATACTCCATG 57.446 36.000 0.00 0.00 35.91 3.66
2123 4201 2.737180 CCGGCCTCTGCATCGTAT 59.263 61.111 0.00 0.00 40.13 3.06
2125 4203 0.317160 CCGGCCTCTGCATCGTATTA 59.683 55.000 0.00 0.00 40.13 0.98
2508 4627 3.305398 AAGCACAAACTCCTACTCGAG 57.695 47.619 11.84 11.84 35.88 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 23 5.221661 ACTCTCTCTTTACCCGAACATGTTT 60.222 40.000 13.36 0.00 0.00 2.83
205 214 9.553064 ACATGTTATTTTTGCCATGTCTTTTTA 57.447 25.926 0.00 0.00 43.12 1.52
219 229 9.471084 CTTTCTTTACCCGAACATGTTATTTTT 57.529 29.630 11.95 0.00 0.00 1.94
330 341 2.063979 CCCACACGCCCATCTCCTA 61.064 63.158 0.00 0.00 0.00 2.94
380 392 1.641140 CAGTTCTCAACGCACGCAA 59.359 52.632 0.00 0.00 36.23 4.85
393 405 4.980805 TCGCCCACACGCCAGTTC 62.981 66.667 0.00 0.00 0.00 3.01
462 474 3.640000 GGCATTCATCCGGTCGCG 61.640 66.667 0.00 0.00 0.00 5.87
532 545 4.298332 GTCGGTTTGAGTTTGCATGAATT 58.702 39.130 0.00 0.00 0.00 2.17
582 595 2.795297 CACACGTGTGGGCGTTTT 59.205 55.556 35.65 1.93 43.83 2.43
646 660 7.913789 TCTACCAGGTCAACACTACATAAAAT 58.086 34.615 0.00 0.00 0.00 1.82
697 712 3.564511 CGAATGTGTTTTGACCATGTCC 58.435 45.455 0.00 0.00 0.00 4.02
738 753 9.256228 AGACACACTACATTTTCCTAGATAGAA 57.744 33.333 0.00 0.00 0.00 2.10
752 767 6.434652 AGCTTACAGAACTAGACACACTACAT 59.565 38.462 0.00 0.00 0.00 2.29
761 776 7.754027 TCAAACGATAAGCTTACAGAACTAGAC 59.246 37.037 8.70 0.00 0.00 2.59
769 784 8.373992 GTCTAAACTCAAACGATAAGCTTACAG 58.626 37.037 8.70 8.33 0.00 2.74
866 885 2.839486 TGTAGAACTCAGCCTTGTGG 57.161 50.000 0.00 0.00 0.00 4.17
914 1101 3.439293 CCTCTGATCGATGTGTGTGTAC 58.561 50.000 0.54 0.00 0.00 2.90
1012 3076 0.321653 AACAATGCCAGGAGGACGAC 60.322 55.000 0.00 0.00 36.89 4.34
1015 3079 1.168714 GACAACAATGCCAGGAGGAC 58.831 55.000 0.00 0.00 36.89 3.85
1017 3081 1.475280 CATGACAACAATGCCAGGAGG 59.525 52.381 0.00 0.00 38.23 4.30
1018 3082 1.135199 GCATGACAACAATGCCAGGAG 60.135 52.381 0.00 0.00 35.44 3.69
1019 3083 0.889994 GCATGACAACAATGCCAGGA 59.110 50.000 0.00 0.00 35.44 3.86
1020 3084 0.457166 CGCATGACAACAATGCCAGG 60.457 55.000 0.00 0.00 38.01 4.45
1022 3086 1.080637 GCGCATGACAACAATGCCA 60.081 52.632 0.30 0.00 38.01 4.92
1023 3087 1.806758 GGCGCATGACAACAATGCC 60.807 57.895 10.83 0.00 38.01 4.40
1024 3088 1.080637 TGGCGCATGACAACAATGC 60.081 52.632 10.83 0.00 37.91 3.56
1025 3089 1.066656 CGTGGCGCATGACAACAATG 61.067 55.000 10.83 0.00 32.32 2.82
1026 3090 1.209898 CGTGGCGCATGACAACAAT 59.790 52.632 10.83 0.00 32.32 2.71
1027 3091 2.636462 CGTGGCGCATGACAACAA 59.364 55.556 10.83 0.00 32.32 2.83
1209 3273 1.754234 GTGGCTGGTTGGGCTATGG 60.754 63.158 0.00 0.00 0.00 2.74
1219 3283 3.819652 TGGCTTGGTGTGGCTGGT 61.820 61.111 0.00 0.00 0.00 4.00
1253 3317 9.408069 GTAGACTGAGGTTGATTATAATTACCG 57.592 37.037 17.94 10.94 0.00 4.02
1312 3376 1.025647 GGTGCGCCACGGGTTAATTA 61.026 55.000 12.58 0.00 34.83 1.40
1330 3394 1.635663 CGCCGGAGCTGTAGTTTTGG 61.636 60.000 5.05 0.00 36.60 3.28
1393 3457 1.454479 CTGCATGATGGACACCCCC 60.454 63.158 0.00 0.00 0.00 5.40
1480 3544 4.657824 ACCCGCGTCCAGTCGTTG 62.658 66.667 4.92 0.00 0.00 4.10
1481 3545 4.657824 CACCCGCGTCCAGTCGTT 62.658 66.667 4.92 0.00 0.00 3.85
1505 3569 1.591594 ATCGGTTGTAGATGCCGCG 60.592 57.895 0.00 0.00 44.58 6.46
1507 3571 0.179084 ACCATCGGTTGTAGATGCCG 60.179 55.000 0.00 0.00 42.92 5.69
1522 3586 0.396435 TCACGTTGAGCCTGAACCAT 59.604 50.000 0.00 0.00 0.00 3.55
1625 3689 2.489971 CCCGAACTTGAAGTAGTGCAA 58.510 47.619 0.00 0.00 0.00 4.08
1627 3691 1.270678 ACCCCGAACTTGAAGTAGTGC 60.271 52.381 0.00 0.00 0.00 4.40
1645 3709 0.388294 GGGCCGTCTGAGTATACACC 59.612 60.000 5.50 0.00 0.00 4.16
1651 3715 2.043248 GAGGGGGCCGTCTGAGTA 60.043 66.667 0.00 0.00 0.00 2.59
1675 3739 0.877649 CTCTCCACCGCGATTCCATG 60.878 60.000 8.23 0.00 0.00 3.66
1681 3745 2.750637 ACGTCTCTCCACCGCGAT 60.751 61.111 8.23 0.00 0.00 4.58
1687 3751 0.963355 AGAGCCTGACGTCTCTCCAC 60.963 60.000 17.92 4.32 34.83 4.02
1720 3784 3.462982 TCTTGCTTGCTTTCGTCAGTAA 58.537 40.909 0.00 0.00 0.00 2.24
1723 3787 1.196354 CCTCTTGCTTGCTTTCGTCAG 59.804 52.381 0.00 0.00 0.00 3.51
1725 3789 0.110010 GCCTCTTGCTTGCTTTCGTC 60.110 55.000 0.00 0.00 36.87 4.20
1726 3790 0.819259 TGCCTCTTGCTTGCTTTCGT 60.819 50.000 0.00 0.00 42.00 3.85
1727 3791 0.524862 ATGCCTCTTGCTTGCTTTCG 59.475 50.000 0.00 0.00 42.00 3.46
1741 3805 1.303309 GCTCGCTGAACATTATGCCT 58.697 50.000 0.00 0.00 0.00 4.75
1753 3817 2.032634 TTGGCTAAACGGCTCGCTG 61.033 57.895 0.00 0.00 39.32 5.18
1755 3819 0.738412 TAGTTGGCTAAACGGCTCGC 60.738 55.000 0.00 0.00 44.04 5.03
1769 3833 9.559958 CTACAATTCATTAAGCCTGTTTAGTTG 57.440 33.333 0.00 0.00 0.00 3.16
1773 3837 9.073475 ACAACTACAATTCATTAAGCCTGTTTA 57.927 29.630 0.00 0.00 0.00 2.01
1774 3838 7.951591 ACAACTACAATTCATTAAGCCTGTTT 58.048 30.769 0.00 0.00 0.00 2.83
1775 3839 7.524717 ACAACTACAATTCATTAAGCCTGTT 57.475 32.000 0.00 0.00 0.00 3.16
1777 3841 8.816640 AAAACAACTACAATTCATTAAGCCTG 57.183 30.769 0.00 0.00 0.00 4.85
1778 3842 9.476202 GAAAAACAACTACAATTCATTAAGCCT 57.524 29.630 0.00 0.00 0.00 4.58
1779 3843 9.255304 TGAAAAACAACTACAATTCATTAAGCC 57.745 29.630 0.00 0.00 0.00 4.35
1786 3850 9.528018 GAAGGAATGAAAAACAACTACAATTCA 57.472 29.630 0.00 0.00 0.00 2.57
1787 3851 8.690840 CGAAGGAATGAAAAACAACTACAATTC 58.309 33.333 0.00 0.00 0.00 2.17
1788 3852 8.410141 TCGAAGGAATGAAAAACAACTACAATT 58.590 29.630 0.00 0.00 0.00 2.32
1789 3853 7.936584 TCGAAGGAATGAAAAACAACTACAAT 58.063 30.769 0.00 0.00 0.00 2.71
1790 3854 7.323049 TCGAAGGAATGAAAAACAACTACAA 57.677 32.000 0.00 0.00 0.00 2.41
1791 3855 6.512741 GCTCGAAGGAATGAAAAACAACTACA 60.513 38.462 0.00 0.00 0.00 2.74
1792 3856 5.851703 GCTCGAAGGAATGAAAAACAACTAC 59.148 40.000 0.00 0.00 0.00 2.73
1793 3857 5.529430 TGCTCGAAGGAATGAAAAACAACTA 59.471 36.000 0.00 0.00 0.00 2.24
1794 3858 4.338118 TGCTCGAAGGAATGAAAAACAACT 59.662 37.500 0.00 0.00 0.00 3.16
1795 3859 4.606961 TGCTCGAAGGAATGAAAAACAAC 58.393 39.130 0.00 0.00 0.00 3.32
1796 3860 4.909696 TGCTCGAAGGAATGAAAAACAA 57.090 36.364 0.00 0.00 0.00 2.83
1797 3861 4.097135 TGTTGCTCGAAGGAATGAAAAACA 59.903 37.500 0.00 0.00 0.00 2.83
1798 3862 4.606961 TGTTGCTCGAAGGAATGAAAAAC 58.393 39.130 0.00 0.00 0.00 2.43
1799 3863 4.909696 TGTTGCTCGAAGGAATGAAAAA 57.090 36.364 0.00 0.00 0.00 1.94
1800 3864 4.278170 ACATGTTGCTCGAAGGAATGAAAA 59.722 37.500 0.00 0.00 0.00 2.29
1801 3865 3.820467 ACATGTTGCTCGAAGGAATGAAA 59.180 39.130 0.00 0.00 0.00 2.69
1802 3866 3.411446 ACATGTTGCTCGAAGGAATGAA 58.589 40.909 0.00 0.00 0.00 2.57
1803 3867 3.057969 ACATGTTGCTCGAAGGAATGA 57.942 42.857 0.00 0.00 0.00 2.57
1804 3868 3.438087 AGAACATGTTGCTCGAAGGAATG 59.562 43.478 17.58 0.00 0.00 2.67
1805 3869 3.679389 AGAACATGTTGCTCGAAGGAAT 58.321 40.909 17.58 0.00 0.00 3.01
1806 3870 3.067106 GAGAACATGTTGCTCGAAGGAA 58.933 45.455 17.58 0.00 0.00 3.36
1807 3871 2.300152 AGAGAACATGTTGCTCGAAGGA 59.700 45.455 17.58 0.00 33.98 3.36
1808 3872 2.670414 GAGAGAACATGTTGCTCGAAGG 59.330 50.000 17.58 0.00 33.98 3.46
1809 3873 2.670414 GGAGAGAACATGTTGCTCGAAG 59.330 50.000 17.58 0.00 33.98 3.79
1810 3874 2.688507 GGAGAGAACATGTTGCTCGAA 58.311 47.619 17.58 0.00 33.98 3.71
1811 3875 1.402852 CGGAGAGAACATGTTGCTCGA 60.403 52.381 17.58 0.00 33.98 4.04
1812 3876 0.994995 CGGAGAGAACATGTTGCTCG 59.005 55.000 17.58 13.48 33.98 5.03
1813 3877 2.370281 TCGGAGAGAACATGTTGCTC 57.630 50.000 17.58 20.09 0.00 4.26
1814 3878 2.419297 GGATCGGAGAGAACATGTTGCT 60.419 50.000 17.58 12.88 43.63 3.91
1815 3879 1.936547 GGATCGGAGAGAACATGTTGC 59.063 52.381 17.58 7.88 43.63 4.17
1816 3880 3.193263 CAGGATCGGAGAGAACATGTTG 58.807 50.000 17.58 0.00 43.63 3.33
1817 3881 2.834549 ACAGGATCGGAGAGAACATGTT 59.165 45.455 11.78 11.78 42.58 2.71
1818 3882 2.461695 ACAGGATCGGAGAGAACATGT 58.538 47.619 0.00 0.00 43.63 3.21
1819 3883 3.131933 AGAACAGGATCGGAGAGAACATG 59.868 47.826 0.00 0.00 43.63 3.21
1820 3884 3.370104 AGAACAGGATCGGAGAGAACAT 58.630 45.455 0.00 0.00 43.63 2.71
1821 3885 2.808919 AGAACAGGATCGGAGAGAACA 58.191 47.619 0.00 0.00 43.63 3.18
1822 3886 3.878160 AAGAACAGGATCGGAGAGAAC 57.122 47.619 0.00 0.00 43.63 3.01
1823 3887 5.715279 TCTTTAAGAACAGGATCGGAGAGAA 59.285 40.000 0.00 0.00 43.63 2.87
1824 3888 5.262009 TCTTTAAGAACAGGATCGGAGAGA 58.738 41.667 0.00 0.00 43.63 3.10
1825 3889 5.584253 TCTTTAAGAACAGGATCGGAGAG 57.416 43.478 0.00 0.00 43.63 3.20
1826 3890 5.422331 ACATCTTTAAGAACAGGATCGGAGA 59.578 40.000 0.00 0.00 45.75 3.71
1827 3891 5.665459 ACATCTTTAAGAACAGGATCGGAG 58.335 41.667 0.00 0.00 0.00 4.63
1828 3892 5.186992 TGACATCTTTAAGAACAGGATCGGA 59.813 40.000 0.00 0.00 0.00 4.55
1829 3893 5.419542 TGACATCTTTAAGAACAGGATCGG 58.580 41.667 0.00 0.00 0.00 4.18
1830 3894 6.333416 TCTGACATCTTTAAGAACAGGATCG 58.667 40.000 18.73 3.82 30.72 3.69
1831 3895 7.327214 ACTCTGACATCTTTAAGAACAGGATC 58.673 38.462 18.73 0.00 30.72 3.36
1832 3896 7.251321 ACTCTGACATCTTTAAGAACAGGAT 57.749 36.000 18.73 10.21 30.72 3.24
1852 3916 1.226746 CTTTGACGGGCGAAAACTCT 58.773 50.000 0.00 0.00 0.00 3.24
1869 3933 8.314021 ACAAAAAGAAACTTTGACATTCTCCTT 58.686 29.630 2.51 0.00 37.25 3.36
1870 3934 7.840931 ACAAAAAGAAACTTTGACATTCTCCT 58.159 30.769 2.51 0.00 37.25 3.69
1871 3935 7.222805 GGACAAAAAGAAACTTTGACATTCTCC 59.777 37.037 2.51 0.00 37.25 3.71
1872 3936 7.044052 CGGACAAAAAGAAACTTTGACATTCTC 60.044 37.037 2.51 0.00 37.25 2.87
1873 3937 6.751888 CGGACAAAAAGAAACTTTGACATTCT 59.248 34.615 2.51 0.00 37.25 2.40
1874 3938 6.530181 ACGGACAAAAAGAAACTTTGACATTC 59.470 34.615 2.51 0.00 37.25 2.67
1875 3939 6.310224 CACGGACAAAAAGAAACTTTGACATT 59.690 34.615 2.51 0.00 37.25 2.71
1877 3941 5.048643 TCACGGACAAAAAGAAACTTTGACA 60.049 36.000 2.51 0.00 37.25 3.58
1878 3942 5.395642 TCACGGACAAAAAGAAACTTTGAC 58.604 37.500 2.51 0.00 37.25 3.18
1884 3948 6.362283 CACCAATATCACGGACAAAAAGAAAC 59.638 38.462 0.00 0.00 0.00 2.78
1885 3949 6.442952 CACCAATATCACGGACAAAAAGAAA 58.557 36.000 0.00 0.00 0.00 2.52
1886 3950 5.048364 CCACCAATATCACGGACAAAAAGAA 60.048 40.000 0.00 0.00 0.00 2.52
1887 3951 4.457603 CCACCAATATCACGGACAAAAAGA 59.542 41.667 0.00 0.00 0.00 2.52
1888 3952 4.380444 CCCACCAATATCACGGACAAAAAG 60.380 45.833 0.00 0.00 0.00 2.27
1893 3970 0.544223 CCCCACCAATATCACGGACA 59.456 55.000 0.00 0.00 0.00 4.02
1921 3998 1.180029 AACATCAGGCATCTGGTTGC 58.820 50.000 0.00 0.00 41.23 4.17
1922 3999 3.947910 AAAACATCAGGCATCTGGTTG 57.052 42.857 0.00 0.00 41.23 3.77
2001 4079 2.552315 ACCATGTTTTTCCTGTACTGCG 59.448 45.455 0.00 0.00 0.00 5.18
2002 4080 4.378046 CGTACCATGTTTTTCCTGTACTGC 60.378 45.833 0.00 0.00 0.00 4.40
2003 4081 4.378046 GCGTACCATGTTTTTCCTGTACTG 60.378 45.833 0.00 0.00 0.00 2.74
2004 4082 3.749609 GCGTACCATGTTTTTCCTGTACT 59.250 43.478 0.00 0.00 0.00 2.73
2005 4083 3.120095 GGCGTACCATGTTTTTCCTGTAC 60.120 47.826 0.00 0.00 35.26 2.90
2006 4084 3.075884 GGCGTACCATGTTTTTCCTGTA 58.924 45.455 0.00 0.00 35.26 2.74
2007 4085 1.883926 GGCGTACCATGTTTTTCCTGT 59.116 47.619 0.00 0.00 35.26 4.00
2008 4086 1.135803 CGGCGTACCATGTTTTTCCTG 60.136 52.381 0.00 0.00 34.57 3.86
2009 4087 1.161843 CGGCGTACCATGTTTTTCCT 58.838 50.000 0.00 0.00 34.57 3.36
2010 4088 1.129811 CTCGGCGTACCATGTTTTTCC 59.870 52.381 6.85 0.00 34.57 3.13
2011 4089 1.802365 ACTCGGCGTACCATGTTTTTC 59.198 47.619 6.85 0.00 34.57 2.29
2020 4098 1.135315 TGACAATACACTCGGCGTACC 60.135 52.381 6.85 0.00 0.00 3.34
2032 4110 9.801873 AAAATTACACTTGGCATATGACAATAC 57.198 29.630 24.09 0.00 43.04 1.89
2038 4116 6.375736 TCCGAAAAATTACACTTGGCATATGA 59.624 34.615 6.97 0.00 0.00 2.15
2039 4117 6.559810 TCCGAAAAATTACACTTGGCATATG 58.440 36.000 0.00 0.00 0.00 1.78
2508 4627 2.000447 GTCCCAAACAGCGAGACATAC 59.000 52.381 0.00 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.