Multiple sequence alignment - TraesCS7D01G465800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G465800 chr7D 100.000 4917 0 0 1 4917 579765000 579760084 0.000000e+00 9081.0
1 TraesCS7D01G465800 chr7D 82.501 1743 267 31 3200 4917 632034966 632036695 0.000000e+00 1495.0
2 TraesCS7D01G465800 chr7D 81.339 1763 284 23 3167 4917 632080941 632082670 0.000000e+00 1391.0
3 TraesCS7D01G465800 chr7D 83.121 1179 174 14 1096 2250 632018330 632019507 0.000000e+00 1051.0
4 TraesCS7D01G465800 chr7D 83.031 1102 154 16 1134 2205 555047302 555048400 0.000000e+00 968.0
5 TraesCS7D01G465800 chr7D 80.779 1181 179 23 1145 2293 632079666 632080830 0.000000e+00 880.0
6 TraesCS7D01G465800 chr7B 95.717 2335 80 11 1 2325 645404364 645402040 0.000000e+00 3740.0
7 TraesCS7D01G465800 chr7B 97.366 1177 30 1 3573 4748 645397381 645396205 0.000000e+00 2001.0
8 TraesCS7D01G465800 chr7B 82.606 1719 243 36 3167 4871 744337434 744335758 0.000000e+00 1467.0
9 TraesCS7D01G465800 chr7B 81.136 1760 299 20 3167 4915 744249609 744251346 0.000000e+00 1380.0
10 TraesCS7D01G465800 chr7B 83.222 1496 228 20 3358 4841 744209543 744211027 0.000000e+00 1351.0
11 TraesCS7D01G465800 chr7B 80.507 1775 292 39 3167 4917 747526250 747524506 0.000000e+00 1312.0
12 TraesCS7D01G465800 chr7B 84.312 1294 173 16 3246 4530 744329100 744327828 0.000000e+00 1238.0
13 TraesCS7D01G465800 chr7B 82.064 1182 188 15 1152 2316 744330826 744329652 0.000000e+00 987.0
14 TraesCS7D01G465800 chr7B 81.564 1215 188 13 1101 2293 744295131 744293931 0.000000e+00 970.0
15 TraesCS7D01G465800 chr7B 82.005 1117 179 10 1152 2248 744339380 744338266 0.000000e+00 929.0
16 TraesCS7D01G465800 chr7B 81.272 1132 189 10 1101 2211 744007407 744006278 0.000000e+00 894.0
17 TraesCS7D01G465800 chr7B 80.488 1189 203 14 1131 2293 744176593 744177778 0.000000e+00 883.0
18 TraesCS7D01G465800 chr7B 89.130 598 37 13 2485 3055 645402048 645401452 0.000000e+00 719.0
19 TraesCS7D01G465800 chr7B 94.215 363 19 2 1 363 645579335 645578975 2.000000e-153 553.0
20 TraesCS7D01G465800 chr7B 90.854 164 12 2 3202 3362 645401169 645401006 2.980000e-52 217.0
21 TraesCS7D01G465800 chr7B 77.707 314 48 19 2730 3034 743997822 743997522 6.540000e-39 172.0
22 TraesCS7D01G465800 chr7B 90.909 66 5 1 3136 3200 645401347 645401282 2.440000e-13 87.9
23 TraesCS7D01G465800 chr7A 94.115 2328 119 14 1 2325 671428458 671426146 0.000000e+00 3524.0
24 TraesCS7D01G465800 chr7A 95.747 1787 71 4 3135 4917 671425474 671423689 0.000000e+00 2874.0
25 TraesCS7D01G465800 chr7A 82.079 1222 181 20 1096 2293 736429553 736428346 0.000000e+00 1009.0
26 TraesCS7D01G465800 chr7A 81.472 1209 202 9 1106 2293 735960547 735961754 0.000000e+00 972.0
27 TraesCS7D01G465800 chr7A 82.126 1091 177 5 1152 2224 736060460 736059370 0.000000e+00 918.0
28 TraesCS7D01G465800 chr7A 91.289 574 42 7 2485 3055 671426154 671425586 0.000000e+00 776.0
29 TraesCS7D01G465800 chr7A 92.727 165 11 1 2317 2480 323448432 323448596 2.290000e-58 237.0
30 TraesCS7D01G465800 chr7A 91.667 48 1 1 1027 1074 736429670 736429626 4.110000e-06 63.9
31 TraesCS7D01G465800 chr1B 83.408 1573 242 18 3355 4917 577925984 577924421 0.000000e+00 1441.0
32 TraesCS7D01G465800 chr3B 81.841 1217 189 12 1109 2297 788258741 788257529 0.000000e+00 994.0
33 TraesCS7D01G465800 chr3B 92.121 165 12 1 2316 2479 428703659 428703823 1.060000e-56 231.0
34 TraesCS7D01G465800 chrUn 81.069 655 112 12 1600 2248 219093688 219093040 3.390000e-141 512.0
35 TraesCS7D01G465800 chr2D 96.933 163 5 0 2317 2479 9646117 9646279 1.740000e-69 274.0
36 TraesCS7D01G465800 chr2D 92.638 163 11 1 2318 2479 526524959 526525121 2.960000e-57 233.0
37 TraesCS7D01G465800 chr6A 93.976 166 9 1 2317 2481 5939077 5939242 2.940000e-62 250.0
38 TraesCS7D01G465800 chr6A 92.262 168 12 1 2314 2480 48520037 48520204 2.290000e-58 237.0
39 TraesCS7D01G465800 chr4D 93.373 166 11 0 2314 2479 455019187 455019352 3.800000e-61 246.0
40 TraesCS7D01G465800 chr4D 90.503 179 15 2 2304 2480 498049939 498050117 8.230000e-58 235.0
41 TraesCS7D01G465800 chr5D 91.124 169 13 2 2314 2480 575280 575448 1.380000e-55 228.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G465800 chr7D 579760084 579765000 4916 True 9081.000000 9081 100.0000 1 4917 1 chr7D.!!$R1 4916
1 TraesCS7D01G465800 chr7D 632034966 632036695 1729 False 1495.000000 1495 82.5010 3200 4917 1 chr7D.!!$F3 1717
2 TraesCS7D01G465800 chr7D 632079666 632082670 3004 False 1135.500000 1391 81.0590 1145 4917 2 chr7D.!!$F4 3772
3 TraesCS7D01G465800 chr7D 632018330 632019507 1177 False 1051.000000 1051 83.1210 1096 2250 1 chr7D.!!$F2 1154
4 TraesCS7D01G465800 chr7D 555047302 555048400 1098 False 968.000000 968 83.0310 1134 2205 1 chr7D.!!$F1 1071
5 TraesCS7D01G465800 chr7B 744249609 744251346 1737 False 1380.000000 1380 81.1360 3167 4915 1 chr7B.!!$F3 1748
6 TraesCS7D01G465800 chr7B 645396205 645404364 8159 True 1352.980000 3740 92.7952 1 4748 5 chr7B.!!$R6 4747
7 TraesCS7D01G465800 chr7B 744209543 744211027 1484 False 1351.000000 1351 83.2220 3358 4841 1 chr7B.!!$F2 1483
8 TraesCS7D01G465800 chr7B 747524506 747526250 1744 True 1312.000000 1312 80.5070 3167 4917 1 chr7B.!!$R5 1750
9 TraesCS7D01G465800 chr7B 744335758 744339380 3622 True 1198.000000 1467 82.3055 1152 4871 2 chr7B.!!$R8 3719
10 TraesCS7D01G465800 chr7B 744327828 744330826 2998 True 1112.500000 1238 83.1880 1152 4530 2 chr7B.!!$R7 3378
11 TraesCS7D01G465800 chr7B 744293931 744295131 1200 True 970.000000 970 81.5640 1101 2293 1 chr7B.!!$R4 1192
12 TraesCS7D01G465800 chr7B 744006278 744007407 1129 True 894.000000 894 81.2720 1101 2211 1 chr7B.!!$R3 1110
13 TraesCS7D01G465800 chr7B 744176593 744177778 1185 False 883.000000 883 80.4880 1131 2293 1 chr7B.!!$F1 1162
14 TraesCS7D01G465800 chr7A 671423689 671428458 4769 True 2391.333333 3524 93.7170 1 4917 3 chr7A.!!$R2 4916
15 TraesCS7D01G465800 chr7A 735960547 735961754 1207 False 972.000000 972 81.4720 1106 2293 1 chr7A.!!$F2 1187
16 TraesCS7D01G465800 chr7A 736059370 736060460 1090 True 918.000000 918 82.1260 1152 2224 1 chr7A.!!$R1 1072
17 TraesCS7D01G465800 chr7A 736428346 736429670 1324 True 536.450000 1009 86.8730 1027 2293 2 chr7A.!!$R3 1266
18 TraesCS7D01G465800 chr1B 577924421 577925984 1563 True 1441.000000 1441 83.4080 3355 4917 1 chr1B.!!$R1 1562
19 TraesCS7D01G465800 chr3B 788257529 788258741 1212 True 994.000000 994 81.8410 1109 2297 1 chr3B.!!$R1 1188
20 TraesCS7D01G465800 chrUn 219093040 219093688 648 True 512.000000 512 81.0690 1600 2248 1 chrUn.!!$R1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 361 1.202177 CGGTGCACATACAGATTTGCC 60.202 52.381 20.43 0.00 37.87 4.52 F
797 798 1.344438 CTGTCCTAACCAGCTGTGTGA 59.656 52.381 13.81 2.62 0.00 3.58 F
1259 1326 1.586564 GTCTCCGGCGAGATTGACG 60.587 63.158 9.30 0.00 46.75 4.35 F
2065 2186 2.032681 GCTGTGGCTTCCGGAAGT 59.967 61.111 37.67 0.00 40.45 3.01 F
2328 2460 2.170012 TGGCTTATACTCCCTCCGTT 57.830 50.000 0.00 0.00 0.00 4.44 F
3111 3562 1.807139 AAGTGTATGCATGCGTGACA 58.193 45.000 22.77 17.51 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1323 1390 0.039978 CTCTTGCACAGTCTCGTCGT 60.040 55.000 0.00 0.00 0.00 4.34 R
1678 1793 0.972983 TCTGGGCCACTAGTGCTCTC 60.973 60.000 17.86 11.33 0.00 3.20 R
2463 2595 1.771255 GCACATACTCCCTCCATTCCT 59.229 52.381 0.00 0.00 0.00 3.36 R
3047 3272 2.821991 AGAAACTTGTAGTCGCTGCT 57.178 45.000 0.00 0.00 0.00 4.24 R
3521 4204 2.939640 GCCCTCCTCTTTCACGCAATAA 60.940 50.000 0.00 0.00 0.00 1.40 R
4898 8961 1.976474 GGAAATGGAGTTGCCGCCA 60.976 57.895 0.00 0.00 45.16 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 7.554476 GCCTAAGTTTGAGATCCAAATAGTTCT 59.446 37.037 11.07 3.21 45.48 3.01
168 169 7.042051 TGCTGACTTCAAACTCTGTTTATGTAC 60.042 37.037 0.00 0.00 0.00 2.90
268 269 6.438108 TGATGTGAATTTTGGTTCTCATGGAT 59.562 34.615 8.40 0.00 40.44 3.41
333 334 7.257722 GCTTATGTAATGTTTGTGCACCTATT 58.742 34.615 15.69 11.52 0.00 1.73
360 361 1.202177 CGGTGCACATACAGATTTGCC 60.202 52.381 20.43 0.00 37.87 4.52
373 374 5.299949 ACAGATTTGCCCAAAATTTCAGTC 58.700 37.500 0.00 0.00 38.64 3.51
383 384 5.167845 CCAAAATTTCAGTCCCAAATACGG 58.832 41.667 0.00 0.00 0.00 4.02
385 386 5.897377 AAATTTCAGTCCCAAATACGGAG 57.103 39.130 0.00 0.00 0.00 4.63
574 575 8.231837 GGAACTTTGCGTGATAAAAATACTACA 58.768 33.333 0.00 0.00 0.00 2.74
602 603 9.920946 TCTTTATTATACCTTTGAGGCTTTGAT 57.079 29.630 0.00 0.00 39.63 2.57
787 788 5.918426 AGTTAGTTAGCTCTGTCCTAACC 57.082 43.478 13.09 3.57 43.47 2.85
794 795 1.674221 GCTCTGTCCTAACCAGCTGTG 60.674 57.143 13.81 6.81 30.90 3.66
797 798 1.344438 CTGTCCTAACCAGCTGTGTGA 59.656 52.381 13.81 2.62 0.00 3.58
806 807 1.867233 CCAGCTGTGTGACACTGTTAC 59.133 52.381 20.99 7.37 36.06 2.50
825 826 5.860182 TGTTACTGCGTTCAAGTGTAGATAC 59.140 40.000 0.00 0.00 0.00 2.24
862 863 5.610398 TGTGGTCATGGCAGTATGTTATAG 58.390 41.667 0.00 0.00 39.31 1.31
1259 1326 1.586564 GTCTCCGGCGAGATTGACG 60.587 63.158 9.30 0.00 46.75 4.35
1323 1390 2.766263 ACGCTGATAGGAGGAACATCAA 59.234 45.455 0.00 0.00 0.00 2.57
1678 1793 3.433615 GGGACAAGATTGAAGAAGACACG 59.566 47.826 0.00 0.00 0.00 4.49
1716 1834 5.381174 CAGATCATGCAAACTGGAAAGAA 57.619 39.130 0.00 0.00 0.00 2.52
1717 1835 5.399858 CAGATCATGCAAACTGGAAAGAAG 58.600 41.667 0.00 0.00 0.00 2.85
1783 1904 4.329545 GGCAAGACCACCCTCGCA 62.330 66.667 0.00 0.00 38.86 5.10
2053 2174 9.520204 CTCAAAATACCCTTTATTAATGCTGTG 57.480 33.333 0.00 0.00 0.00 3.66
2059 2180 4.202151 CCCTTTATTAATGCTGTGGCTTCC 60.202 45.833 0.00 0.00 39.59 3.46
2065 2186 2.032681 GCTGTGGCTTCCGGAAGT 59.967 61.111 37.67 0.00 40.45 3.01
2205 2326 7.201470 GCAGGTCCGTACTTAATTAAACACTAC 60.201 40.741 0.00 2.39 0.00 2.73
2321 2453 8.396272 ACATGTAATTCAATGGCTTATACTCC 57.604 34.615 0.00 0.00 0.00 3.85
2322 2454 7.448469 ACATGTAATTCAATGGCTTATACTCCC 59.552 37.037 0.00 0.00 0.00 4.30
2323 2455 7.149202 TGTAATTCAATGGCTTATACTCCCT 57.851 36.000 0.00 0.00 0.00 4.20
2324 2456 7.224297 TGTAATTCAATGGCTTATACTCCCTC 58.776 38.462 0.00 0.00 0.00 4.30
2326 2458 2.632996 TCAATGGCTTATACTCCCTCCG 59.367 50.000 0.00 0.00 0.00 4.63
2328 2460 2.170012 TGGCTTATACTCCCTCCGTT 57.830 50.000 0.00 0.00 0.00 4.44
2329 2461 2.474112 TGGCTTATACTCCCTCCGTTT 58.526 47.619 0.00 0.00 0.00 3.60
2330 2462 2.433239 TGGCTTATACTCCCTCCGTTTC 59.567 50.000 0.00 0.00 0.00 2.78
2331 2463 2.433239 GGCTTATACTCCCTCCGTTTCA 59.567 50.000 0.00 0.00 0.00 2.69
2332 2464 3.118519 GGCTTATACTCCCTCCGTTTCAA 60.119 47.826 0.00 0.00 0.00 2.69
2333 2465 4.510571 GCTTATACTCCCTCCGTTTCAAA 58.489 43.478 0.00 0.00 0.00 2.69
2334 2466 4.939439 GCTTATACTCCCTCCGTTTCAAAA 59.061 41.667 0.00 0.00 0.00 2.44
2335 2467 5.589050 GCTTATACTCCCTCCGTTTCAAAAT 59.411 40.000 0.00 0.00 0.00 1.82
2336 2468 6.764560 GCTTATACTCCCTCCGTTTCAAAATA 59.235 38.462 0.00 0.00 0.00 1.40
2337 2469 7.444487 GCTTATACTCCCTCCGTTTCAAAATAT 59.556 37.037 0.00 0.00 0.00 1.28
2338 2470 9.991906 CTTATACTCCCTCCGTTTCAAAATATA 57.008 33.333 0.00 0.00 0.00 0.86
2340 2472 8.904099 ATACTCCCTCCGTTTCAAAATATAAG 57.096 34.615 0.00 0.00 0.00 1.73
2341 2473 6.718294 ACTCCCTCCGTTTCAAAATATAAGT 58.282 36.000 0.00 0.00 0.00 2.24
2342 2474 6.822170 ACTCCCTCCGTTTCAAAATATAAGTC 59.178 38.462 0.00 0.00 0.00 3.01
2343 2475 6.954232 TCCCTCCGTTTCAAAATATAAGTCT 58.046 36.000 0.00 0.00 0.00 3.24
2344 2476 7.399634 TCCCTCCGTTTCAAAATATAAGTCTT 58.600 34.615 0.00 0.00 0.00 3.01
2345 2477 7.886446 TCCCTCCGTTTCAAAATATAAGTCTTT 59.114 33.333 0.00 0.00 0.00 2.52
2346 2478 8.520351 CCCTCCGTTTCAAAATATAAGTCTTTT 58.480 33.333 0.00 0.00 0.00 2.27
2373 2505 8.780846 AGAGATTCCACTATAGACTACATACG 57.219 38.462 6.78 0.00 0.00 3.06
2374 2506 8.595421 AGAGATTCCACTATAGACTACATACGA 58.405 37.037 6.78 0.00 0.00 3.43
2375 2507 9.217278 GAGATTCCACTATAGACTACATACGAA 57.783 37.037 6.78 0.00 0.00 3.85
2376 2508 9.221933 AGATTCCACTATAGACTACATACGAAG 57.778 37.037 6.78 0.00 0.00 3.79
2377 2509 6.798315 TCCACTATAGACTACATACGAAGC 57.202 41.667 6.78 0.00 0.00 3.86
2378 2510 6.293698 TCCACTATAGACTACATACGAAGCA 58.706 40.000 6.78 0.00 0.00 3.91
2379 2511 6.769341 TCCACTATAGACTACATACGAAGCAA 59.231 38.462 6.78 0.00 0.00 3.91
2380 2512 7.283807 TCCACTATAGACTACATACGAAGCAAA 59.716 37.037 6.78 0.00 0.00 3.68
2381 2513 7.919091 CCACTATAGACTACATACGAAGCAAAA 59.081 37.037 6.78 0.00 0.00 2.44
2382 2514 9.464714 CACTATAGACTACATACGAAGCAAAAT 57.535 33.333 6.78 0.00 0.00 1.82
2387 2519 8.186178 AGACTACATACGAAGCAAAATTAGTG 57.814 34.615 0.00 0.00 0.00 2.74
2388 2520 8.033038 AGACTACATACGAAGCAAAATTAGTGA 58.967 33.333 0.00 0.00 0.00 3.41
2389 2521 8.542497 ACTACATACGAAGCAAAATTAGTGAA 57.458 30.769 0.00 0.00 0.00 3.18
2390 2522 8.440833 ACTACATACGAAGCAAAATTAGTGAAC 58.559 33.333 0.00 0.00 0.00 3.18
2391 2523 7.435068 ACATACGAAGCAAAATTAGTGAACT 57.565 32.000 0.00 0.00 0.00 3.01
2392 2524 7.871853 ACATACGAAGCAAAATTAGTGAACTT 58.128 30.769 0.00 0.00 0.00 2.66
2393 2525 8.995220 ACATACGAAGCAAAATTAGTGAACTTA 58.005 29.630 0.00 0.00 0.00 2.24
2394 2526 9.988350 CATACGAAGCAAAATTAGTGAACTTAT 57.012 29.630 0.00 0.00 0.00 1.73
2397 2529 9.216117 ACGAAGCAAAATTAGTGAACTTATACT 57.784 29.630 0.00 0.00 0.00 2.12
2407 2539 9.662947 ATTAGTGAACTTATACTTAAAAGGCGT 57.337 29.630 0.00 0.00 0.00 5.68
2408 2540 7.592439 AGTGAACTTATACTTAAAAGGCGTC 57.408 36.000 0.00 0.00 0.00 5.19
2409 2541 7.384477 AGTGAACTTATACTTAAAAGGCGTCT 58.616 34.615 0.00 0.00 0.00 4.18
2410 2542 8.526147 AGTGAACTTATACTTAAAAGGCGTCTA 58.474 33.333 0.00 0.00 0.00 2.59
2411 2543 9.310716 GTGAACTTATACTTAAAAGGCGTCTAT 57.689 33.333 0.00 0.00 0.00 1.98
2420 2552 7.088905 ACTTAAAAGGCGTCTATATACATCCG 58.911 38.462 0.00 0.00 0.00 4.18
2421 2553 5.717078 AAAAGGCGTCTATATACATCCGA 57.283 39.130 0.00 0.00 0.00 4.55
2422 2554 5.717078 AAAGGCGTCTATATACATCCGAA 57.283 39.130 0.00 0.00 0.00 4.30
2423 2555 5.916661 AAGGCGTCTATATACATCCGAAT 57.083 39.130 0.00 0.00 0.00 3.34
2424 2556 5.250235 AGGCGTCTATATACATCCGAATG 57.750 43.478 0.00 0.00 38.93 2.67
2439 2571 8.234136 ACATCCGAATGTAGTCTTTATAGTGA 57.766 34.615 0.00 0.00 44.38 3.41
2440 2572 8.692710 ACATCCGAATGTAGTCTTTATAGTGAA 58.307 33.333 0.00 0.00 44.38 3.18
2441 2573 9.529325 CATCCGAATGTAGTCTTTATAGTGAAA 57.471 33.333 0.00 0.00 0.00 2.69
2474 2606 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
2475 2607 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
2482 2614 5.630415 TTTAGGAATGGAGGGAGTATGTG 57.370 43.478 0.00 0.00 0.00 3.21
2575 2709 3.983344 GCATGGCGCTAAATAAGGAAATG 59.017 43.478 7.64 0.00 37.77 2.32
2822 3026 6.620678 AGATGGAAAACATAACAATTCGGTG 58.379 36.000 0.00 0.00 40.72 4.94
2830 3034 4.695455 ACATAACAATTCGGTGAACCTCTG 59.305 41.667 0.00 0.00 0.00 3.35
2832 3036 3.703001 ACAATTCGGTGAACCTCTGAT 57.297 42.857 0.00 0.00 0.00 2.90
2837 3042 2.176045 TCGGTGAACCTCTGATGCTAA 58.824 47.619 0.00 0.00 0.00 3.09
2840 3045 3.941483 CGGTGAACCTCTGATGCTAAAAT 59.059 43.478 0.00 0.00 0.00 1.82
2844 3049 7.201732 CGGTGAACCTCTGATGCTAAAATAATT 60.202 37.037 0.00 0.00 0.00 1.40
2916 3138 7.425595 GCTAGAGACATTGCACGTAAATTTAAC 59.574 37.037 0.00 0.00 0.00 2.01
2956 3178 7.359849 GGCTAGTACGTATTAAGCATTTTAGGC 60.360 40.741 21.02 8.56 0.00 3.93
2983 3206 6.488683 ACTGGGAGAAAATAATTTCACGTGAA 59.511 34.615 26.53 26.53 46.03 3.18
3034 3259 9.071276 ACGATATGATTTCTGCTAAATTTGGAT 57.929 29.630 5.63 0.00 0.00 3.41
3053 3278 5.830900 GGATACAAGTTTCTATAGCAGCG 57.169 43.478 0.00 0.00 0.00 5.18
3054 3279 5.529791 GGATACAAGTTTCTATAGCAGCGA 58.470 41.667 0.00 0.00 0.00 4.93
3055 3280 5.402867 GGATACAAGTTTCTATAGCAGCGAC 59.597 44.000 0.00 0.00 0.00 5.19
3075 3300 5.340803 CGACTACAAGTTTCTATAGCAGCA 58.659 41.667 0.00 0.00 0.00 4.41
3091 3542 3.118334 AGCAGCAATGAGAGAGCAGTATT 60.118 43.478 0.00 0.00 0.00 1.89
3101 3552 6.507900 TGAGAGAGCAGTATTAAGTGTATGC 58.492 40.000 0.00 0.00 0.00 3.14
3103 3554 7.060383 AGAGAGCAGTATTAAGTGTATGCAT 57.940 36.000 3.79 3.79 36.15 3.96
3106 3557 4.212004 AGCAGTATTAAGTGTATGCATGCG 59.788 41.667 14.09 0.00 36.15 4.73
3109 3560 5.234116 CAGTATTAAGTGTATGCATGCGTGA 59.766 40.000 22.77 6.01 0.00 4.35
3110 3561 4.536364 ATTAAGTGTATGCATGCGTGAC 57.464 40.909 22.77 17.40 0.00 3.67
3111 3562 1.807139 AAGTGTATGCATGCGTGACA 58.193 45.000 22.77 17.51 0.00 3.58
3112 3563 2.028420 AGTGTATGCATGCGTGACAT 57.972 45.000 22.77 14.50 40.66 3.06
3116 3567 3.309682 GTGTATGCATGCGTGACATTACT 59.690 43.478 22.77 0.00 36.64 2.24
3118 3569 4.394610 TGTATGCATGCGTGACATTACTTT 59.605 37.500 22.77 0.00 36.64 2.66
3120 3571 2.161410 TGCATGCGTGACATTACTTTCC 59.839 45.455 14.09 0.00 36.64 3.13
3121 3572 2.161410 GCATGCGTGACATTACTTTCCA 59.839 45.455 10.93 0.00 36.64 3.53
3122 3573 3.181497 GCATGCGTGACATTACTTTCCAT 60.181 43.478 10.93 0.00 36.64 3.41
3123 3574 4.035091 GCATGCGTGACATTACTTTCCATA 59.965 41.667 10.93 0.00 36.64 2.74
3124 3575 5.448496 GCATGCGTGACATTACTTTCCATAA 60.448 40.000 10.93 0.00 36.64 1.90
3126 3577 6.751514 TGCGTGACATTACTTTCCATAATT 57.248 33.333 0.00 0.00 0.00 1.40
3128 3579 7.026562 TGCGTGACATTACTTTCCATAATTTG 58.973 34.615 0.00 0.00 0.00 2.32
3129 3580 7.094592 TGCGTGACATTACTTTCCATAATTTGA 60.095 33.333 0.00 0.00 0.00 2.69
3130 3581 7.753132 GCGTGACATTACTTTCCATAATTTGAA 59.247 33.333 0.00 0.00 0.00 2.69
3144 3650 9.806203 TCCATAATTTGAATGCATTTCTGTAAG 57.194 29.630 14.33 1.28 35.23 2.34
3353 3976 7.752695 AGAAGTAAATTTGAGTGCCTTATTCG 58.247 34.615 0.00 0.00 0.00 3.34
3443 4126 9.247126 CAAGTGAGATAGATGAAGATTACACAG 57.753 37.037 0.00 0.00 0.00 3.66
3521 4204 3.201266 TGCCGTTAAAGTAATGGGAGGAT 59.799 43.478 8.07 0.00 43.55 3.24
3760 7812 5.438761 AAGGTTTTCTTCATGGAAACTCG 57.561 39.130 0.00 0.00 35.31 4.18
3856 7911 3.627123 TGTATGTTGCTCCATGGATTTCG 59.373 43.478 16.63 4.42 0.00 3.46
4236 8296 2.714250 TGTACTTCCAGGGAACATTGGT 59.286 45.455 0.00 0.00 36.26 3.67
4610 8670 7.651027 ATGATGGGTTGATAAAAGAGAAAGG 57.349 36.000 0.00 0.00 0.00 3.11
4716 8776 2.687370 GGTGGTTATTTTGGCAAGCAG 58.313 47.619 0.00 0.00 33.19 4.24
4898 8961 0.613012 GGGGCTGAATTCTTGCAGGT 60.613 55.000 19.89 0.00 32.83 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 5.339447 CCCCATATATTCTTGCTAGCATCCA 60.339 44.000 20.13 5.43 0.00 3.41
168 169 2.805353 CTCGCCTCGTCAACACGG 60.805 66.667 0.00 0.00 46.70 4.94
233 234 8.006298 ACCAAAATTCACATCAACAAGAGTAA 57.994 30.769 0.00 0.00 0.00 2.24
234 235 7.581213 ACCAAAATTCACATCAACAAGAGTA 57.419 32.000 0.00 0.00 0.00 2.59
268 269 4.443621 TCAACTCATGTTTTACACGGTCA 58.556 39.130 0.00 0.00 33.52 4.02
302 303 5.676079 GCACAAACATTACATAAGCCGACAT 60.676 40.000 0.00 0.00 0.00 3.06
333 334 0.973496 TGTATGTGCACCGGGCTAGA 60.973 55.000 15.69 0.00 45.15 2.43
360 361 5.047660 TCCGTATTTGGGACTGAAATTTTGG 60.048 40.000 0.00 0.00 0.00 3.28
373 374 2.368875 ACTCTATGGCTCCGTATTTGGG 59.631 50.000 0.00 0.00 0.00 4.12
383 384 4.522722 ACGGCTTTATACTCTATGGCTC 57.477 45.455 0.00 0.00 0.00 4.70
385 386 4.164294 CGTACGGCTTTATACTCTATGGC 58.836 47.826 7.57 0.00 0.00 4.40
787 788 2.541346 CAGTAACAGTGTCACACAGCTG 59.459 50.000 13.48 13.48 36.74 4.24
794 795 2.198406 TGAACGCAGTAACAGTGTCAC 58.802 47.619 0.00 0.00 45.00 3.67
797 798 2.607635 CACTTGAACGCAGTAACAGTGT 59.392 45.455 0.00 0.00 45.00 3.55
806 807 2.852413 CCGTATCTACACTTGAACGCAG 59.148 50.000 0.00 0.00 0.00 5.18
825 826 2.002586 GACCACATCACATCTTGTCCG 58.997 52.381 0.00 0.00 0.00 4.79
862 863 1.654317 CAGAGCATTCTGGCAGACTC 58.346 55.000 18.55 19.62 45.79 3.36
916 917 9.739276 TTATTTAACTCTATCATAGCATTGGGG 57.261 33.333 0.00 0.00 0.00 4.96
978 980 1.673767 TGAAGAGGAAGATGGGGCTT 58.326 50.000 0.00 0.00 0.00 4.35
1259 1326 0.534203 TGGAACTTGTCGCCCAACTC 60.534 55.000 0.00 0.00 0.00 3.01
1323 1390 0.039978 CTCTTGCACAGTCTCGTCGT 60.040 55.000 0.00 0.00 0.00 4.34
1678 1793 0.972983 TCTGGGCCACTAGTGCTCTC 60.973 60.000 17.86 11.33 0.00 3.20
1783 1904 5.474876 GGTCTCATCATTGAAAACCTTCTGT 59.525 40.000 0.00 0.00 32.33 3.41
2053 2174 1.826096 AGAACTCTACTTCCGGAAGCC 59.174 52.381 38.22 20.17 41.99 4.35
2059 2180 3.444034 TGGTGATGAGAACTCTACTTCCG 59.556 47.826 3.51 0.00 0.00 4.30
2065 2186 6.314899 TCTCTAGTGGTGATGAGAACTCTA 57.685 41.667 3.51 0.00 33.30 2.43
2274 2405 8.562892 CATGTAACTAATTTGGAAGCATCCTAG 58.437 37.037 9.78 5.10 46.70 3.02
2316 2448 7.854337 ACTTATATTTTGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
2317 2449 6.718294 ACTTATATTTTGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
2318 2450 7.048512 AGACTTATATTTTGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
2319 2451 6.954232 AGACTTATATTTTGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
2320 2452 7.625828 AAGACTTATATTTTGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
2347 2479 9.221933 CGTATGTAGTCTATAGTGGAATCTCTT 57.778 37.037 0.00 0.00 0.00 2.85
2348 2480 8.595421 TCGTATGTAGTCTATAGTGGAATCTCT 58.405 37.037 0.00 0.00 0.00 3.10
2349 2481 8.774890 TCGTATGTAGTCTATAGTGGAATCTC 57.225 38.462 0.00 0.00 0.00 2.75
2350 2482 9.221933 CTTCGTATGTAGTCTATAGTGGAATCT 57.778 37.037 0.00 0.00 0.00 2.40
2351 2483 7.964011 GCTTCGTATGTAGTCTATAGTGGAATC 59.036 40.741 0.00 0.00 0.00 2.52
2352 2484 7.447545 TGCTTCGTATGTAGTCTATAGTGGAAT 59.552 37.037 0.00 0.00 0.00 3.01
2353 2485 6.769341 TGCTTCGTATGTAGTCTATAGTGGAA 59.231 38.462 0.00 0.00 0.00 3.53
2354 2486 6.293698 TGCTTCGTATGTAGTCTATAGTGGA 58.706 40.000 0.00 0.00 0.00 4.02
2355 2487 6.555812 TGCTTCGTATGTAGTCTATAGTGG 57.444 41.667 0.00 0.00 0.00 4.00
2356 2488 8.851960 TTTTGCTTCGTATGTAGTCTATAGTG 57.148 34.615 0.00 0.00 0.00 2.74
2361 2493 9.297586 CACTAATTTTGCTTCGTATGTAGTCTA 57.702 33.333 0.00 0.00 0.00 2.59
2362 2494 8.033038 TCACTAATTTTGCTTCGTATGTAGTCT 58.967 33.333 0.00 0.00 0.00 3.24
2363 2495 8.181487 TCACTAATTTTGCTTCGTATGTAGTC 57.819 34.615 0.00 0.00 0.00 2.59
2364 2496 8.440833 GTTCACTAATTTTGCTTCGTATGTAGT 58.559 33.333 0.00 0.00 0.00 2.73
2365 2497 8.656849 AGTTCACTAATTTTGCTTCGTATGTAG 58.343 33.333 0.00 0.00 0.00 2.74
2366 2498 8.542497 AGTTCACTAATTTTGCTTCGTATGTA 57.458 30.769 0.00 0.00 0.00 2.29
2367 2499 7.435068 AGTTCACTAATTTTGCTTCGTATGT 57.565 32.000 0.00 0.00 0.00 2.29
2368 2500 9.988350 ATAAGTTCACTAATTTTGCTTCGTATG 57.012 29.630 0.00 0.00 0.00 2.39
2371 2503 9.216117 AGTATAAGTTCACTAATTTTGCTTCGT 57.784 29.630 0.00 0.00 0.00 3.85
2381 2513 9.662947 ACGCCTTTTAAGTATAAGTTCACTAAT 57.337 29.630 0.00 0.00 0.00 1.73
2382 2514 9.143631 GACGCCTTTTAAGTATAAGTTCACTAA 57.856 33.333 0.00 0.00 0.00 2.24
2383 2515 8.526147 AGACGCCTTTTAAGTATAAGTTCACTA 58.474 33.333 0.00 0.00 0.00 2.74
2384 2516 7.384477 AGACGCCTTTTAAGTATAAGTTCACT 58.616 34.615 0.00 0.00 0.00 3.41
2385 2517 7.592439 AGACGCCTTTTAAGTATAAGTTCAC 57.408 36.000 0.00 0.00 0.00 3.18
2394 2526 8.239314 CGGATGTATATAGACGCCTTTTAAGTA 58.761 37.037 7.38 0.00 0.00 2.24
2395 2527 7.040201 TCGGATGTATATAGACGCCTTTTAAGT 60.040 37.037 7.38 0.00 0.00 2.24
2396 2528 7.310664 TCGGATGTATATAGACGCCTTTTAAG 58.689 38.462 7.38 0.00 0.00 1.85
2397 2529 7.218228 TCGGATGTATATAGACGCCTTTTAA 57.782 36.000 7.38 0.00 0.00 1.52
2398 2530 6.822667 TCGGATGTATATAGACGCCTTTTA 57.177 37.500 7.38 0.00 0.00 1.52
2399 2531 5.717078 TCGGATGTATATAGACGCCTTTT 57.283 39.130 7.38 0.00 0.00 2.27
2400 2532 5.717078 TTCGGATGTATATAGACGCCTTT 57.283 39.130 7.38 0.00 0.00 3.11
2401 2533 5.185249 ACATTCGGATGTATATAGACGCCTT 59.815 40.000 7.81 0.00 44.51 4.35
2402 2534 4.705507 ACATTCGGATGTATATAGACGCCT 59.294 41.667 7.81 0.00 44.51 5.52
2403 2535 4.995124 ACATTCGGATGTATATAGACGCC 58.005 43.478 7.81 0.00 44.51 5.68
2404 2536 6.783162 ACTACATTCGGATGTATATAGACGC 58.217 40.000 16.89 0.00 45.20 5.19
2405 2537 8.199176 AGACTACATTCGGATGTATATAGACG 57.801 38.462 16.89 6.27 45.20 4.18
2413 2545 9.346005 TCACTATAAAGACTACATTCGGATGTA 57.654 33.333 15.76 15.76 44.51 2.29
2415 2547 9.529325 TTTCACTATAAAGACTACATTCGGATG 57.471 33.333 0.88 0.88 39.25 3.51
2448 2580 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
2449 2581 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
2450 2582 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
2451 2583 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
2452 2584 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
2453 2585 9.860393 ATACTCCCTCCATTCCTAAATATAAGT 57.140 33.333 0.00 0.00 0.00 2.24
2455 2587 9.629649 ACATACTCCCTCCATTCCTAAATATAA 57.370 33.333 0.00 0.00 0.00 0.98
2456 2588 9.046846 CACATACTCCCTCCATTCCTAAATATA 57.953 37.037 0.00 0.00 0.00 0.86
2457 2589 7.529560 GCACATACTCCCTCCATTCCTAAATAT 60.530 40.741 0.00 0.00 0.00 1.28
2458 2590 6.239887 GCACATACTCCCTCCATTCCTAAATA 60.240 42.308 0.00 0.00 0.00 1.40
2459 2591 5.456763 GCACATACTCCCTCCATTCCTAAAT 60.457 44.000 0.00 0.00 0.00 1.40
2460 2592 4.141482 GCACATACTCCCTCCATTCCTAAA 60.141 45.833 0.00 0.00 0.00 1.85
2461 2593 3.391296 GCACATACTCCCTCCATTCCTAA 59.609 47.826 0.00 0.00 0.00 2.69
2462 2594 2.972713 GCACATACTCCCTCCATTCCTA 59.027 50.000 0.00 0.00 0.00 2.94
2463 2595 1.771255 GCACATACTCCCTCCATTCCT 59.229 52.381 0.00 0.00 0.00 3.36
2464 2596 1.771255 AGCACATACTCCCTCCATTCC 59.229 52.381 0.00 0.00 0.00 3.01
2465 2597 4.899352 ATAGCACATACTCCCTCCATTC 57.101 45.455 0.00 0.00 0.00 2.67
2466 2598 5.013183 GGTAATAGCACATACTCCCTCCATT 59.987 44.000 0.00 0.00 0.00 3.16
2467 2599 4.532521 GGTAATAGCACATACTCCCTCCAT 59.467 45.833 0.00 0.00 0.00 3.41
2468 2600 3.901844 GGTAATAGCACATACTCCCTCCA 59.098 47.826 0.00 0.00 0.00 3.86
2469 2601 4.161102 AGGTAATAGCACATACTCCCTCC 58.839 47.826 0.00 0.00 0.00 4.30
2470 2602 5.081032 AGAGGTAATAGCACATACTCCCTC 58.919 45.833 0.00 0.00 0.00 4.30
2471 2603 5.081315 AGAGGTAATAGCACATACTCCCT 57.919 43.478 0.00 0.00 0.00 4.20
2472 2604 5.511545 CCAAGAGGTAATAGCACATACTCCC 60.512 48.000 0.00 0.00 0.00 4.30
2473 2605 5.304614 TCCAAGAGGTAATAGCACATACTCC 59.695 44.000 0.00 0.00 35.89 3.85
2474 2606 6.406692 TCCAAGAGGTAATAGCACATACTC 57.593 41.667 0.00 0.00 35.89 2.59
2475 2607 6.183361 CCTTCCAAGAGGTAATAGCACATACT 60.183 42.308 0.00 0.00 35.89 2.12
2566 2700 4.148079 TGGTGTTGTGATGCATTTCCTTA 58.852 39.130 0.00 0.00 0.00 2.69
2575 2709 2.083167 CCCAATTGGTGTTGTGATGC 57.917 50.000 22.91 0.00 0.00 3.91
2808 3012 4.935205 TCAGAGGTTCACCGAATTGTTATG 59.065 41.667 0.00 0.00 42.08 1.90
2819 3023 7.573968 ATTATTTTAGCATCAGAGGTTCACC 57.426 36.000 0.00 0.00 0.00 4.02
2956 3178 5.121768 ACGTGAAATTATTTTCTCCCAGTCG 59.878 40.000 10.54 0.00 41.54 4.18
3031 3256 5.402867 GTCGCTGCTATAGAAACTTGTATCC 59.597 44.000 3.21 0.00 0.00 2.59
3034 3259 5.578005 AGTCGCTGCTATAGAAACTTGTA 57.422 39.130 3.21 0.00 0.00 2.41
3035 3260 4.457834 AGTCGCTGCTATAGAAACTTGT 57.542 40.909 3.21 0.00 0.00 3.16
3036 3261 5.340803 TGTAGTCGCTGCTATAGAAACTTG 58.659 41.667 3.21 0.00 0.00 3.16
3037 3262 5.578005 TGTAGTCGCTGCTATAGAAACTT 57.422 39.130 3.21 0.00 0.00 2.66
3038 3263 5.125739 ACTTGTAGTCGCTGCTATAGAAACT 59.874 40.000 3.21 0.00 0.00 2.66
3039 3264 5.341617 ACTTGTAGTCGCTGCTATAGAAAC 58.658 41.667 3.21 0.00 0.00 2.78
3040 3265 5.578005 ACTTGTAGTCGCTGCTATAGAAA 57.422 39.130 3.21 0.00 0.00 2.52
3041 3266 5.578005 AACTTGTAGTCGCTGCTATAGAA 57.422 39.130 3.21 0.00 0.00 2.10
3042 3267 5.357314 AGAAACTTGTAGTCGCTGCTATAGA 59.643 40.000 3.21 0.00 0.00 1.98
3043 3268 5.583495 AGAAACTTGTAGTCGCTGCTATAG 58.417 41.667 0.00 0.00 0.00 1.31
3044 3269 5.578005 AGAAACTTGTAGTCGCTGCTATA 57.422 39.130 0.00 0.00 0.00 1.31
3045 3270 4.457834 AGAAACTTGTAGTCGCTGCTAT 57.542 40.909 0.00 0.00 0.00 2.97
3046 3271 3.936372 AGAAACTTGTAGTCGCTGCTA 57.064 42.857 0.00 0.00 0.00 3.49
3047 3272 2.821991 AGAAACTTGTAGTCGCTGCT 57.178 45.000 0.00 0.00 0.00 4.24
3048 3273 4.207429 GCTATAGAAACTTGTAGTCGCTGC 59.793 45.833 3.21 0.00 0.00 5.25
3049 3274 5.340803 TGCTATAGAAACTTGTAGTCGCTG 58.659 41.667 3.21 0.00 0.00 5.18
3050 3275 5.578005 TGCTATAGAAACTTGTAGTCGCT 57.422 39.130 3.21 0.00 0.00 4.93
3051 3276 4.207429 GCTGCTATAGAAACTTGTAGTCGC 59.793 45.833 3.21 0.00 0.00 5.19
3052 3277 5.340803 TGCTGCTATAGAAACTTGTAGTCG 58.659 41.667 3.21 0.00 0.00 4.18
3053 3278 7.492669 TCATTGCTGCTATAGAAACTTGTAGTC 59.507 37.037 3.21 0.00 0.00 2.59
3054 3279 7.331026 TCATTGCTGCTATAGAAACTTGTAGT 58.669 34.615 3.21 0.00 0.00 2.73
3055 3280 7.708322 TCTCATTGCTGCTATAGAAACTTGTAG 59.292 37.037 3.21 0.00 0.00 2.74
3075 3300 7.655328 GCATACACTTAATACTGCTCTCTCATT 59.345 37.037 0.00 0.00 0.00 2.57
3091 3542 2.966050 TGTCACGCATGCATACACTTA 58.034 42.857 19.57 0.00 0.00 2.24
3101 3552 4.621068 ATGGAAAGTAATGTCACGCATG 57.379 40.909 0.00 0.00 37.96 4.06
3103 3554 6.751514 AATTATGGAAAGTAATGTCACGCA 57.248 33.333 0.00 0.00 0.00 5.24
3118 3569 9.806203 CTTACAGAAATGCATTCAAATTATGGA 57.194 29.630 13.38 0.00 40.72 3.41
3123 3574 9.545105 TTCAACTTACAGAAATGCATTCAAATT 57.455 25.926 13.38 0.00 40.72 1.82
3124 3575 9.715121 ATTCAACTTACAGAAATGCATTCAAAT 57.285 25.926 13.38 0.00 40.72 2.32
3353 3976 5.609533 TTAACTATGTACCAAGCTCCTCC 57.390 43.478 0.00 0.00 0.00 4.30
3436 4119 7.303261 CGATATCCTTTAGCGTATCTGTGTAA 58.697 38.462 0.00 0.00 0.00 2.41
3437 4120 6.128090 CCGATATCCTTTAGCGTATCTGTGTA 60.128 42.308 0.00 0.00 0.00 2.90
3443 4126 6.561614 TCAATCCGATATCCTTTAGCGTATC 58.438 40.000 0.00 0.00 0.00 2.24
3521 4204 2.939640 GCCCTCCTCTTTCACGCAATAA 60.940 50.000 0.00 0.00 0.00 1.40
3760 7812 8.567285 TTCTTCCCAATTCTTCTAAATCACTC 57.433 34.615 0.00 0.00 0.00 3.51
3856 7911 3.058432 AGCGAACAATATCATGCATGCTC 60.058 43.478 22.25 2.63 0.00 4.26
4062 8119 4.579340 CCAGGTTTCATCTTGATCTGGATG 59.421 45.833 16.77 16.77 39.53 3.51
4207 8267 9.615660 AATGTTCCCTGGAAGTACAGATATATA 57.384 33.333 0.00 0.00 40.97 0.86
4236 8296 9.241919 TCAAGGAATTGCAATAGTTTCATCTTA 57.758 29.630 13.39 0.00 0.00 2.10
4370 8430 6.790319 AGTTTCCTCATATTTGTTAGGGTGT 58.210 36.000 0.00 0.00 0.00 4.16
4371 8431 8.801882 TTAGTTTCCTCATATTTGTTAGGGTG 57.198 34.615 0.00 0.00 0.00 4.61
4610 8670 2.968574 TGCTCTTCCTCAGGGATACATC 59.031 50.000 0.00 0.00 41.87 3.06
4716 8776 2.019984 GACATCATCCAAGTTGGGAGC 58.980 52.381 21.85 3.06 41.08 4.70
4898 8961 1.976474 GGAAATGGAGTTGCCGCCA 60.976 57.895 0.00 0.00 45.16 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.