Multiple sequence alignment - TraesCS7D01G465300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G465300 chr7D 100.000 2413 0 0 1 2413 579361305 579363717 0.000000e+00 4457.0
1 TraesCS7D01G465300 chr7D 84.000 950 86 21 572 1475 578811170 578810241 0.000000e+00 852.0
2 TraesCS7D01G465300 chr7D 83.938 909 72 31 574 1427 578912947 578912058 0.000000e+00 802.0
3 TraesCS7D01G465300 chr7D 91.398 186 11 4 1616 1799 106160206 106160024 1.430000e-62 250.0
4 TraesCS7D01G465300 chr7D 88.889 207 15 7 1595 1798 638256713 638256512 5.150000e-62 248.0
5 TraesCS7D01G465300 chr7A 84.664 1102 99 33 538 1616 671200397 671201451 0.000000e+00 1035.0
6 TraesCS7D01G465300 chr7A 94.235 503 26 3 1 500 488491970 488492472 0.000000e+00 765.0
7 TraesCS7D01G465300 chr7A 80.081 989 86 43 563 1475 670865442 670864489 1.220000e-177 632.0
8 TraesCS7D01G465300 chr7A 90.811 185 10 6 1619 1800 33298658 33298838 8.620000e-60 241.0
9 TraesCS7D01G465300 chr7A 91.111 180 13 2 1618 1795 686142786 686142608 8.620000e-60 241.0
10 TraesCS7D01G465300 chr7A 89.071 183 14 6 1615 1795 80912127 80911949 3.120000e-54 222.0
11 TraesCS7D01G465300 chr7A 78.598 271 30 14 2017 2287 671201777 671202019 1.160000e-33 154.0
12 TraesCS7D01G465300 chr7B 84.339 945 79 28 574 1462 642832025 642831094 0.000000e+00 861.0
13 TraesCS7D01G465300 chr7B 93.861 505 26 3 1 500 20058889 20059393 0.000000e+00 756.0
14 TraesCS7D01G465300 chr7B 82.258 868 72 33 563 1377 645266088 645265250 0.000000e+00 675.0
15 TraesCS7D01G465300 chr7B 83.243 740 77 20 744 1462 643015699 643014986 9.410000e-179 636.0
16 TraesCS7D01G465300 chr7B 82.219 748 79 20 744 1462 642974372 642973650 1.600000e-166 595.0
17 TraesCS7D01G465300 chr7B 82.243 749 77 21 744 1462 643002741 643002019 1.600000e-166 595.0
18 TraesCS7D01G465300 chr7B 81.842 749 80 22 744 1462 642989445 642988723 1.610000e-161 579.0
19 TraesCS7D01G465300 chr7B 98.113 53 1 0 2315 2367 645262559 645262507 2.550000e-15 93.5
20 TraesCS7D01G465300 chr7B 85.135 74 6 4 674 746 642975116 642975047 1.200000e-08 71.3
21 TraesCS7D01G465300 chr7B 85.135 74 6 4 674 746 642990188 642990119 1.200000e-08 71.3
22 TraesCS7D01G465300 chr7B 85.135 74 6 4 674 746 643003485 643003416 1.200000e-08 71.3
23 TraesCS7D01G465300 chr7B 85.135 74 6 4 674 746 643016443 643016374 1.200000e-08 71.3
24 TraesCS7D01G465300 chrUn 94.433 503 26 2 1 501 87970566 87970064 0.000000e+00 773.0
25 TraesCS7D01G465300 chr2D 94.257 505 23 5 1 503 579471926 579472426 0.000000e+00 767.0
26 TraesCS7D01G465300 chr5B 94.071 506 27 3 1 503 393837768 393837263 0.000000e+00 765.0
27 TraesCS7D01G465300 chr5B 90.270 185 13 3 1609 1790 697833956 697834138 1.120000e-58 237.0
28 TraesCS7D01G465300 chr5A 94.036 503 27 3 1 500 401308513 401309015 0.000000e+00 760.0
29 TraesCS7D01G465300 chr5A 93.837 503 28 3 1 500 688517642 688518144 0.000000e+00 754.0
30 TraesCS7D01G465300 chr5A 92.571 175 10 2 1619 1791 531024600 531024427 5.150000e-62 248.0
31 TraesCS7D01G465300 chr1A 94.200 500 25 4 1 496 4652416 4652915 0.000000e+00 760.0
32 TraesCS7D01G465300 chr3A 93.837 503 28 3 1 500 442748260 442748762 0.000000e+00 754.0
33 TraesCS7D01G465300 chr6D 93.085 188 9 3 1619 1804 436109688 436109873 3.060000e-69 272.0
34 TraesCS7D01G465300 chr2B 90.909 176 14 1 1619 1792 603659771 603659596 4.010000e-58 235.0
35 TraesCS7D01G465300 chr2A 100.000 28 0 0 2385 2412 39740268 39740295 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G465300 chr7D 579361305 579363717 2412 False 4457.00 4457 100.0000 1 2413 1 chr7D.!!$F1 2412
1 TraesCS7D01G465300 chr7D 578810241 578811170 929 True 852.00 852 84.0000 572 1475 1 chr7D.!!$R2 903
2 TraesCS7D01G465300 chr7D 578912058 578912947 889 True 802.00 802 83.9380 574 1427 1 chr7D.!!$R3 853
3 TraesCS7D01G465300 chr7A 488491970 488492472 502 False 765.00 765 94.2350 1 500 1 chr7A.!!$F2 499
4 TraesCS7D01G465300 chr7A 670864489 670865442 953 True 632.00 632 80.0810 563 1475 1 chr7A.!!$R2 912
5 TraesCS7D01G465300 chr7A 671200397 671202019 1622 False 594.50 1035 81.6310 538 2287 2 chr7A.!!$F3 1749
6 TraesCS7D01G465300 chr7B 642831094 642832025 931 True 861.00 861 84.3390 574 1462 1 chr7B.!!$R1 888
7 TraesCS7D01G465300 chr7B 20058889 20059393 504 False 756.00 756 93.8610 1 500 1 chr7B.!!$F1 499
8 TraesCS7D01G465300 chr7B 645262507 645266088 3581 True 384.25 675 90.1855 563 2367 2 chr7B.!!$R6 1804
9 TraesCS7D01G465300 chr7B 643014986 643016443 1457 True 353.65 636 84.1890 674 1462 2 chr7B.!!$R5 788
10 TraesCS7D01G465300 chr7B 642973650 642975116 1466 True 333.15 595 83.6770 674 1462 2 chr7B.!!$R2 788
11 TraesCS7D01G465300 chr7B 643002019 643003485 1466 True 333.15 595 83.6890 674 1462 2 chr7B.!!$R4 788
12 TraesCS7D01G465300 chr7B 642988723 642990188 1465 True 325.15 579 83.4885 674 1462 2 chr7B.!!$R3 788
13 TraesCS7D01G465300 chrUn 87970064 87970566 502 True 773.00 773 94.4330 1 501 1 chrUn.!!$R1 500
14 TraesCS7D01G465300 chr2D 579471926 579472426 500 False 767.00 767 94.2570 1 503 1 chr2D.!!$F1 502
15 TraesCS7D01G465300 chr5B 393837263 393837768 505 True 765.00 765 94.0710 1 503 1 chr5B.!!$R1 502
16 TraesCS7D01G465300 chr5A 401308513 401309015 502 False 760.00 760 94.0360 1 500 1 chr5A.!!$F1 499
17 TraesCS7D01G465300 chr5A 688517642 688518144 502 False 754.00 754 93.8370 1 500 1 chr5A.!!$F2 499
18 TraesCS7D01G465300 chr3A 442748260 442748762 502 False 754.00 754 93.8370 1 500 1 chr3A.!!$F1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 495 0.109723 ACGTAGGGCCAAAGAAGCAA 59.89 50.0 6.18 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 4793 0.31777 ACATTTGAAACGCACGCAGG 60.318 50.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.678934 AGGTCGAAGGGCAGCGTA 60.679 61.111 0.00 0.00 0.00 4.42
79 80 2.767445 CGTATCGTCGAGGCCACCA 61.767 63.158 5.01 0.00 0.00 4.17
177 179 2.948720 GCAAGAGGCGAGTCCACCT 61.949 63.158 0.00 0.00 39.65 4.00
179 181 2.286523 AAGAGGCGAGTCCACCTGG 61.287 63.158 4.10 0.00 36.05 4.45
195 198 2.091885 ACCTGGAGCAGAAGAAACCAAA 60.092 45.455 0.00 0.00 32.44 3.28
209 212 1.813102 ACCAAAAAGATGCCCCCAAA 58.187 45.000 0.00 0.00 0.00 3.28
240 243 1.129998 CGTAGAGACGTCGACACCATT 59.870 52.381 17.16 0.18 44.31 3.16
242 245 1.244816 AGAGACGTCGACACCATTCA 58.755 50.000 17.16 0.00 0.00 2.57
248 251 1.214367 GTCGACACCATTCAACACGT 58.786 50.000 11.55 0.00 0.00 4.49
438 445 3.536917 CCGCCGTAGCCCATCAGA 61.537 66.667 0.00 0.00 34.57 3.27
487 495 0.109723 ACGTAGGGCCAAAGAAGCAA 59.890 50.000 6.18 0.00 0.00 3.91
503 511 1.673009 CAACAACATACCGGGCCGT 60.673 57.895 26.32 15.36 0.00 5.68
504 512 0.391395 CAACAACATACCGGGCCGTA 60.391 55.000 26.32 17.08 0.00 4.02
505 513 0.391528 AACAACATACCGGGCCGTAC 60.392 55.000 26.32 0.00 0.00 3.67
506 514 1.879430 CAACATACCGGGCCGTACG 60.879 63.158 26.32 12.44 0.00 3.67
507 515 2.350458 AACATACCGGGCCGTACGT 61.350 57.895 26.32 18.01 0.00 3.57
508 516 2.278989 CATACCGGGCCGTACGTG 60.279 66.667 26.32 13.78 0.00 4.49
509 517 3.530260 ATACCGGGCCGTACGTGG 61.530 66.667 26.32 10.81 0.00 4.94
517 525 3.291611 CCGTACGTGGCTACCCTT 58.708 61.111 15.21 0.00 0.00 3.95
518 526 1.593265 CCGTACGTGGCTACCCTTT 59.407 57.895 15.21 0.00 0.00 3.11
519 527 0.459063 CCGTACGTGGCTACCCTTTC 60.459 60.000 15.21 0.00 0.00 2.62
520 528 0.529378 CGTACGTGGCTACCCTTTCT 59.471 55.000 7.22 0.00 0.00 2.52
521 529 1.067354 CGTACGTGGCTACCCTTTCTT 60.067 52.381 7.22 0.00 0.00 2.52
522 530 2.344025 GTACGTGGCTACCCTTTCTTG 58.656 52.381 0.00 0.00 0.00 3.02
523 531 0.763035 ACGTGGCTACCCTTTCTTGT 59.237 50.000 0.00 0.00 0.00 3.16
524 532 1.142262 ACGTGGCTACCCTTTCTTGTT 59.858 47.619 0.00 0.00 0.00 2.83
525 533 2.369532 ACGTGGCTACCCTTTCTTGTTA 59.630 45.455 0.00 0.00 0.00 2.41
526 534 3.000727 CGTGGCTACCCTTTCTTGTTAG 58.999 50.000 0.00 0.00 0.00 2.34
527 535 3.344515 GTGGCTACCCTTTCTTGTTAGG 58.655 50.000 0.00 0.00 0.00 2.69
528 536 2.983898 TGGCTACCCTTTCTTGTTAGGT 59.016 45.455 0.00 0.00 34.52 3.08
529 537 3.396611 TGGCTACCCTTTCTTGTTAGGTT 59.603 43.478 0.00 0.00 31.89 3.50
530 538 4.598373 TGGCTACCCTTTCTTGTTAGGTTA 59.402 41.667 0.00 0.00 31.89 2.85
531 539 5.252164 TGGCTACCCTTTCTTGTTAGGTTAT 59.748 40.000 0.00 0.00 31.89 1.89
532 540 5.589050 GGCTACCCTTTCTTGTTAGGTTATG 59.411 44.000 0.00 0.00 31.89 1.90
533 541 5.066117 GCTACCCTTTCTTGTTAGGTTATGC 59.934 44.000 0.00 0.00 31.89 3.14
534 542 5.256806 ACCCTTTCTTGTTAGGTTATGCT 57.743 39.130 0.00 0.00 0.00 3.79
535 543 5.641155 ACCCTTTCTTGTTAGGTTATGCTT 58.359 37.500 0.00 0.00 0.00 3.91
536 544 6.786122 ACCCTTTCTTGTTAGGTTATGCTTA 58.214 36.000 0.00 0.00 0.00 3.09
539 547 8.406297 CCCTTTCTTGTTAGGTTATGCTTAATC 58.594 37.037 0.00 0.00 0.00 1.75
542 550 7.766219 TCTTGTTAGGTTATGCTTAATCGAC 57.234 36.000 0.00 1.39 0.00 4.20
639 663 4.687948 CCTAATCATCATCGGTGTTAGCTG 59.312 45.833 0.00 0.00 0.00 4.24
660 687 5.292101 GCTGCACTAACTAACTAGGTTCATG 59.708 44.000 0.00 0.00 0.00 3.07
661 688 6.599356 TGCACTAACTAACTAGGTTCATGA 57.401 37.500 0.00 0.00 0.00 3.07
662 689 6.631016 TGCACTAACTAACTAGGTTCATGAG 58.369 40.000 0.00 0.00 0.00 2.90
663 690 6.210784 TGCACTAACTAACTAGGTTCATGAGT 59.789 38.462 0.00 0.00 0.00 3.41
664 691 6.531948 GCACTAACTAACTAGGTTCATGAGTG 59.468 42.308 0.00 0.26 32.08 3.51
667 694 5.312120 ACTAACTAGGTTCATGAGTGACG 57.688 43.478 0.00 0.00 33.11 4.35
670 704 4.966965 ACTAGGTTCATGAGTGACGTAG 57.033 45.455 17.91 17.91 33.11 3.51
689 723 4.898488 CGTAGTTCTCTTTTGCAAACGAAG 59.102 41.667 17.81 10.80 0.00 3.79
726 775 5.005971 CGAGACTTGCTCACTAGACTACTAC 59.994 48.000 0.00 0.00 44.15 2.73
727 776 6.057321 AGACTTGCTCACTAGACTACTACT 57.943 41.667 0.00 0.00 0.00 2.57
728 777 7.185318 AGACTTGCTCACTAGACTACTACTA 57.815 40.000 0.00 0.00 0.00 1.82
729 778 7.798071 AGACTTGCTCACTAGACTACTACTAT 58.202 38.462 0.00 0.00 0.00 2.12
770 1496 4.785453 GAGGGGGCTCGTGGCTTG 62.785 72.222 11.00 0.00 41.46 4.01
787 1513 2.878406 GCTTGTCCTTGTAGTTGAAGCA 59.122 45.455 0.00 0.00 35.50 3.91
872 1608 3.921021 CGCTCCAGTAGAGTGTACTTTTG 59.079 47.826 0.00 0.00 46.25 2.44
879 1615 7.391554 TCCAGTAGAGTGTACTTTTGTATACGT 59.608 37.037 0.00 0.00 47.00 3.57
944 1701 1.524961 GTCACCAGTCACCACCACA 59.475 57.895 0.00 0.00 0.00 4.17
965 1739 2.046892 CTCCTCACAACCCCGCTG 60.047 66.667 0.00 0.00 0.00 5.18
1020 1794 3.054287 TCCTATAAATCGGCACCACCAAA 60.054 43.478 0.00 0.00 39.03 3.28
1035 1809 1.420138 ACCAAACACCACGGAATCTCT 59.580 47.619 0.00 0.00 0.00 3.10
1036 1810 2.158667 ACCAAACACCACGGAATCTCTT 60.159 45.455 0.00 0.00 0.00 2.85
1046 1829 1.000496 CGGAATCTCTTACCTACGCCC 60.000 57.143 0.00 0.00 0.00 6.13
1073 1856 0.184933 TCCAACCAACCACCCAAGAG 59.815 55.000 0.00 0.00 0.00 2.85
1130 1937 2.434185 GGCAATGCCTCGTCGTCA 60.434 61.111 18.47 0.00 46.69 4.35
1131 1938 2.032634 GGCAATGCCTCGTCGTCAA 61.033 57.895 18.47 0.00 46.69 3.18
1503 2350 1.331756 GTGGTAGCCATGAGAATTGCG 59.668 52.381 0.00 0.00 35.28 4.85
1504 2351 0.308993 GGTAGCCATGAGAATTGCGC 59.691 55.000 0.00 0.00 0.00 6.09
1505 2352 0.308993 GTAGCCATGAGAATTGCGCC 59.691 55.000 4.18 0.00 0.00 6.53
1506 2353 1.159713 TAGCCATGAGAATTGCGCCG 61.160 55.000 4.18 0.00 0.00 6.46
1530 2377 6.804783 CGCCCTATTTTGTTTCGTTCTTTATT 59.195 34.615 0.00 0.00 0.00 1.40
1531 2378 7.327518 CGCCCTATTTTGTTTCGTTCTTTATTT 59.672 33.333 0.00 0.00 0.00 1.40
1532 2379 9.628746 GCCCTATTTTGTTTCGTTCTTTATTTA 57.371 29.630 0.00 0.00 0.00 1.40
1544 2391 4.866327 TCTTTATTTATCCCCCAACCGT 57.134 40.909 0.00 0.00 0.00 4.83
1561 2408 2.174319 GTGCCGCAACTAGCTAGGC 61.174 63.158 24.35 18.28 46.33 3.93
1608 2474 7.769914 TGTGGGGTGGATTATGATATATGAT 57.230 36.000 0.00 0.00 0.00 2.45
1616 2482 9.265901 GTGGATTATGATATATGATGGCTGTAC 57.734 37.037 0.00 0.00 0.00 2.90
1618 2484 9.703892 GGATTATGATATATGATGGCTGTACTC 57.296 37.037 0.00 0.00 0.00 2.59
1621 2487 7.730672 ATGATATATGATGGCTGTACTCAGT 57.269 36.000 0.00 0.00 43.05 3.41
1622 2488 6.928520 TGATATATGATGGCTGTACTCAGTG 58.071 40.000 0.00 0.00 43.05 3.66
1623 2489 2.996249 ATGATGGCTGTACTCAGTGG 57.004 50.000 0.00 0.00 43.05 4.00
1625 2491 0.807667 GATGGCTGTACTCAGTGGCG 60.808 60.000 0.00 0.00 43.05 5.69
1626 2492 1.257750 ATGGCTGTACTCAGTGGCGA 61.258 55.000 0.00 0.00 43.05 5.54
1627 2493 1.292223 GGCTGTACTCAGTGGCGAA 59.708 57.895 0.00 0.00 43.05 4.70
1628 2494 0.108138 GGCTGTACTCAGTGGCGAAT 60.108 55.000 0.00 0.00 43.05 3.34
1629 2495 1.281899 GCTGTACTCAGTGGCGAATC 58.718 55.000 0.00 0.00 43.05 2.52
1633 2499 3.086282 TGTACTCAGTGGCGAATCTACA 58.914 45.455 0.00 0.00 0.00 2.74
1636 2502 2.425312 ACTCAGTGGCGAATCTACAGAG 59.575 50.000 0.00 0.00 42.67 3.35
1637 2503 2.685388 CTCAGTGGCGAATCTACAGAGA 59.315 50.000 0.00 0.00 40.58 3.10
1638 2504 3.089284 TCAGTGGCGAATCTACAGAGAA 58.911 45.455 0.00 0.00 34.61 2.87
1639 2505 3.509967 TCAGTGGCGAATCTACAGAGAAA 59.490 43.478 0.00 0.00 34.61 2.52
1640 2506 4.021456 TCAGTGGCGAATCTACAGAGAAAA 60.021 41.667 0.00 0.00 34.61 2.29
1641 2507 4.872691 CAGTGGCGAATCTACAGAGAAAAT 59.127 41.667 0.00 0.00 34.61 1.82
1644 2510 4.081142 TGGCGAATCTACAGAGAAAATGGA 60.081 41.667 0.00 0.00 34.61 3.41
1645 2511 4.509600 GGCGAATCTACAGAGAAAATGGAG 59.490 45.833 0.00 0.00 34.61 3.86
1646 2512 4.509600 GCGAATCTACAGAGAAAATGGAGG 59.490 45.833 0.00 0.00 34.61 4.30
1647 2513 5.053145 CGAATCTACAGAGAAAATGGAGGG 58.947 45.833 0.00 0.00 34.61 4.30
1648 2514 5.395768 CGAATCTACAGAGAAAATGGAGGGT 60.396 44.000 0.00 0.00 34.61 4.34
1649 2515 4.826274 TCTACAGAGAAAATGGAGGGTG 57.174 45.455 0.00 0.00 0.00 4.61
1650 2516 2.887151 ACAGAGAAAATGGAGGGTGG 57.113 50.000 0.00 0.00 0.00 4.61
1651 2517 1.355720 ACAGAGAAAATGGAGGGTGGG 59.644 52.381 0.00 0.00 0.00 4.61
1652 2518 0.332972 AGAGAAAATGGAGGGTGGGC 59.667 55.000 0.00 0.00 0.00 5.36
1653 2519 0.332972 GAGAAAATGGAGGGTGGGCT 59.667 55.000 0.00 0.00 0.00 5.19
1654 2520 0.040204 AGAAAATGGAGGGTGGGCTG 59.960 55.000 0.00 0.00 0.00 4.85
1655 2521 0.972471 GAAAATGGAGGGTGGGCTGG 60.972 60.000 0.00 0.00 0.00 4.85
1656 2522 2.460476 AAAATGGAGGGTGGGCTGGG 62.460 60.000 0.00 0.00 0.00 4.45
1657 2523 4.701437 ATGGAGGGTGGGCTGGGT 62.701 66.667 0.00 0.00 0.00 4.51
1658 2524 4.938756 TGGAGGGTGGGCTGGGTT 62.939 66.667 0.00 0.00 0.00 4.11
1659 2525 4.366684 GGAGGGTGGGCTGGGTTG 62.367 72.222 0.00 0.00 0.00 3.77
1669 2535 3.502164 GCTGGGTTGCCTATGTCAT 57.498 52.632 0.00 0.00 0.00 3.06
1670 2536 1.027357 GCTGGGTTGCCTATGTCATG 58.973 55.000 0.00 0.00 0.00 3.07
1671 2537 1.027357 CTGGGTTGCCTATGTCATGC 58.973 55.000 0.00 0.00 0.00 4.06
1672 2538 0.747644 TGGGTTGCCTATGTCATGCG 60.748 55.000 0.00 0.00 0.00 4.73
1673 2539 0.463654 GGGTTGCCTATGTCATGCGA 60.464 55.000 0.00 0.00 0.00 5.10
1674 2540 1.378531 GGTTGCCTATGTCATGCGAA 58.621 50.000 0.00 0.00 0.00 4.70
1675 2541 1.949525 GGTTGCCTATGTCATGCGAAT 59.050 47.619 0.00 0.00 0.00 3.34
1676 2542 3.138304 GGTTGCCTATGTCATGCGAATA 58.862 45.455 0.00 0.00 0.00 1.75
1677 2543 3.753272 GGTTGCCTATGTCATGCGAATAT 59.247 43.478 0.00 0.00 0.00 1.28
1678 2544 4.935205 GGTTGCCTATGTCATGCGAATATA 59.065 41.667 0.00 0.00 0.00 0.86
1679 2545 5.586243 GGTTGCCTATGTCATGCGAATATAT 59.414 40.000 0.00 0.00 0.00 0.86
1680 2546 6.457392 GGTTGCCTATGTCATGCGAATATATG 60.457 42.308 0.00 0.00 0.00 1.78
1681 2547 5.733676 TGCCTATGTCATGCGAATATATGT 58.266 37.500 0.00 0.00 0.00 2.29
1682 2548 6.172630 TGCCTATGTCATGCGAATATATGTT 58.827 36.000 0.00 0.00 0.00 2.71
1683 2549 6.092533 TGCCTATGTCATGCGAATATATGTTG 59.907 38.462 0.00 0.00 0.00 3.33
1684 2550 6.092670 GCCTATGTCATGCGAATATATGTTGT 59.907 38.462 0.00 0.00 0.00 3.32
1685 2551 7.277760 GCCTATGTCATGCGAATATATGTTGTA 59.722 37.037 0.00 0.00 0.00 2.41
1686 2552 9.317936 CCTATGTCATGCGAATATATGTTGTAT 57.682 33.333 0.00 0.00 0.00 2.29
1689 2555 9.830294 ATGTCATGCGAATATATGTTGTATTTG 57.170 29.630 0.00 0.00 0.00 2.32
1690 2556 8.288913 TGTCATGCGAATATATGTTGTATTTGG 58.711 33.333 0.00 0.00 0.00 3.28
1691 2557 7.271223 GTCATGCGAATATATGTTGTATTTGGC 59.729 37.037 0.00 0.00 0.00 4.52
1692 2558 6.875948 TGCGAATATATGTTGTATTTGGCT 57.124 33.333 0.00 0.00 0.00 4.75
1693 2559 7.971183 TGCGAATATATGTTGTATTTGGCTA 57.029 32.000 0.00 0.00 0.00 3.93
1694 2560 8.384607 TGCGAATATATGTTGTATTTGGCTAA 57.615 30.769 0.00 0.00 0.00 3.09
1695 2561 8.286800 TGCGAATATATGTTGTATTTGGCTAAC 58.713 33.333 0.00 0.00 0.00 2.34
1696 2562 8.286800 GCGAATATATGTTGTATTTGGCTAACA 58.713 33.333 0.00 0.00 37.43 2.41
1708 2574 5.559148 TTTGGCTAACAAATGGTTGGATT 57.441 34.783 0.00 0.00 43.81 3.01
1709 2575 4.533919 TGGCTAACAAATGGTTGGATTG 57.466 40.909 0.00 0.00 40.14 2.67
1710 2576 3.260380 TGGCTAACAAATGGTTGGATTGG 59.740 43.478 0.00 0.00 40.14 3.16
1711 2577 3.369366 GGCTAACAAATGGTTGGATTGGG 60.369 47.826 0.00 0.00 40.14 4.12
1712 2578 2.857186 AACAAATGGTTGGATTGGGC 57.143 45.000 0.00 0.00 38.60 5.36
1713 2579 0.983467 ACAAATGGTTGGATTGGGCC 59.017 50.000 0.00 0.00 39.22 5.80
1714 2580 1.278537 CAAATGGTTGGATTGGGCCT 58.721 50.000 4.53 0.00 0.00 5.19
1715 2581 1.629861 CAAATGGTTGGATTGGGCCTT 59.370 47.619 4.53 0.00 0.00 4.35
1716 2582 2.040145 CAAATGGTTGGATTGGGCCTTT 59.960 45.455 4.53 0.00 0.00 3.11
1717 2583 2.938428 ATGGTTGGATTGGGCCTTTA 57.062 45.000 4.53 0.00 0.00 1.85
1718 2584 2.704190 TGGTTGGATTGGGCCTTTAA 57.296 45.000 4.53 0.00 0.00 1.52
1719 2585 2.977808 TGGTTGGATTGGGCCTTTAAA 58.022 42.857 4.53 0.00 0.00 1.52
1720 2586 2.635427 TGGTTGGATTGGGCCTTTAAAC 59.365 45.455 4.53 3.18 0.00 2.01
1721 2587 2.903784 GGTTGGATTGGGCCTTTAAACT 59.096 45.455 4.53 0.00 0.00 2.66
1722 2588 4.090819 GGTTGGATTGGGCCTTTAAACTA 58.909 43.478 4.53 0.00 0.00 2.24
1723 2589 4.528987 GGTTGGATTGGGCCTTTAAACTAA 59.471 41.667 4.53 0.00 0.00 2.24
1724 2590 5.188948 GGTTGGATTGGGCCTTTAAACTAAT 59.811 40.000 4.53 0.00 0.00 1.73
1725 2591 6.381707 GGTTGGATTGGGCCTTTAAACTAATA 59.618 38.462 4.53 0.00 0.00 0.98
1726 2592 7.417456 GGTTGGATTGGGCCTTTAAACTAATAG 60.417 40.741 4.53 0.00 0.00 1.73
1727 2593 6.737608 TGGATTGGGCCTTTAAACTAATAGT 58.262 36.000 4.53 0.00 0.00 2.12
1728 2594 7.874252 TGGATTGGGCCTTTAAACTAATAGTA 58.126 34.615 4.53 0.00 0.00 1.82
1729 2595 8.337739 TGGATTGGGCCTTTAAACTAATAGTAA 58.662 33.333 4.53 0.00 0.00 2.24
1730 2596 9.192642 GGATTGGGCCTTTAAACTAATAGTAAA 57.807 33.333 4.53 0.00 0.00 2.01
1734 2600 9.590828 TGGGCCTTTAAACTAATAGTAAAAACT 57.409 29.630 4.53 0.00 0.00 2.66
1750 2616 8.141835 AGTAAAAACTAATTTTGCAAAGCTGG 57.858 30.769 12.41 8.02 43.57 4.85
1751 2617 7.984617 AGTAAAAACTAATTTTGCAAAGCTGGA 59.015 29.630 12.41 0.00 43.57 3.86
1752 2618 6.849588 AAAACTAATTTTGCAAAGCTGGAG 57.150 33.333 12.41 9.06 36.64 3.86
1753 2619 4.525912 ACTAATTTTGCAAAGCTGGAGG 57.474 40.909 12.41 3.51 0.00 4.30
1754 2620 2.845363 AATTTTGCAAAGCTGGAGGG 57.155 45.000 12.41 0.00 0.00 4.30
1755 2621 0.978907 ATTTTGCAAAGCTGGAGGGG 59.021 50.000 12.41 0.00 0.00 4.79
1756 2622 1.120795 TTTTGCAAAGCTGGAGGGGG 61.121 55.000 12.41 0.00 0.00 5.40
1777 2643 2.941453 GCTTAAGCCTGTTAAAGCCC 57.059 50.000 17.00 0.00 34.31 5.19
1778 2644 1.476891 GCTTAAGCCTGTTAAAGCCCC 59.523 52.381 17.00 0.00 34.31 5.80
1779 2645 2.884304 GCTTAAGCCTGTTAAAGCCCCT 60.884 50.000 17.00 0.00 34.31 4.79
1780 2646 3.623954 GCTTAAGCCTGTTAAAGCCCCTA 60.624 47.826 17.00 0.00 34.31 3.53
1781 2647 2.808906 AAGCCTGTTAAAGCCCCTAG 57.191 50.000 0.00 0.00 0.00 3.02
1782 2648 1.670059 AGCCTGTTAAAGCCCCTAGT 58.330 50.000 0.00 0.00 0.00 2.57
1783 2649 2.841795 AGCCTGTTAAAGCCCCTAGTA 58.158 47.619 0.00 0.00 0.00 1.82
1784 2650 2.772515 AGCCTGTTAAAGCCCCTAGTAG 59.227 50.000 0.00 0.00 0.00 2.57
1785 2651 2.770232 GCCTGTTAAAGCCCCTAGTAGA 59.230 50.000 0.00 0.00 0.00 2.59
1786 2652 3.391626 GCCTGTTAAAGCCCCTAGTAGAT 59.608 47.826 0.00 0.00 0.00 1.98
1787 2653 4.141459 GCCTGTTAAAGCCCCTAGTAGATT 60.141 45.833 0.00 0.00 0.00 2.40
1788 2654 5.612351 CCTGTTAAAGCCCCTAGTAGATTC 58.388 45.833 0.00 0.00 0.00 2.52
1789 2655 5.272283 TGTTAAAGCCCCTAGTAGATTCG 57.728 43.478 0.00 0.00 0.00 3.34
1792 2658 2.973983 AGCCCCTAGTAGATTCGCTA 57.026 50.000 0.00 0.00 0.00 4.26
1819 4694 2.167075 CTCCATTGAATTTGGGCCACTC 59.833 50.000 5.23 3.85 34.85 3.51
1821 4696 1.545582 CATTGAATTTGGGCCACTCGT 59.454 47.619 5.23 0.00 0.00 4.18
1835 4710 1.739562 CTCGTGGAGCTGCAGGAAC 60.740 63.158 27.07 7.70 0.00 3.62
1837 4712 2.320587 CGTGGAGCTGCAGGAACAC 61.321 63.158 21.73 1.48 0.00 3.32
1840 4715 0.321671 TGGAGCTGCAGGAACACTAC 59.678 55.000 17.12 4.62 0.00 2.73
1841 4716 0.391793 GGAGCTGCAGGAACACTACC 60.392 60.000 17.12 3.85 0.00 3.18
1880 4793 5.554822 TTTCACGATATAAACCTTGGTGC 57.445 39.130 0.00 0.00 0.00 5.01
1883 4796 3.312421 CACGATATAAACCTTGGTGCCTG 59.688 47.826 0.00 0.00 0.00 4.85
1884 4797 2.290641 CGATATAAACCTTGGTGCCTGC 59.709 50.000 0.00 0.00 0.00 4.85
1885 4798 1.745232 TATAAACCTTGGTGCCTGCG 58.255 50.000 0.00 0.00 0.00 5.18
1907 4820 3.670055 GTGCGTTTCAAATGTTCCTGATG 59.330 43.478 0.00 0.00 0.00 3.07
1915 4828 5.181009 TCAAATGTTCCTGATGCTCTACAG 58.819 41.667 0.00 0.00 0.00 2.74
1945 4858 9.585099 CCTCTCTTCATATATATGCTCTGAAAC 57.415 37.037 16.59 0.00 33.76 2.78
1972 4889 1.308998 CCAATGCGGACTTATCACCC 58.691 55.000 0.00 0.00 36.56 4.61
2014 4985 4.437794 GCATTGCATCAAAGTGATCGAGAA 60.438 41.667 3.15 0.00 34.28 2.87
2024 4995 2.567169 AGTGATCGAGAATGGTTGGTGA 59.433 45.455 0.00 0.00 0.00 4.02
2030 5001 5.925506 TCGAGAATGGTTGGTGATAGTAA 57.074 39.130 0.00 0.00 0.00 2.24
2094 5111 2.133742 GATGCAGGGTGTGTGTGTGC 62.134 60.000 0.00 0.00 34.62 4.57
2096 5113 3.952675 CAGGGTGTGTGTGTGCGC 61.953 66.667 0.00 0.00 0.00 6.09
2132 5158 4.344865 GGCACCACCGTCCACCAT 62.345 66.667 0.00 0.00 0.00 3.55
2143 5169 0.096976 GTCCACCATGATTGTTCGCG 59.903 55.000 0.00 0.00 0.00 5.87
2144 5170 0.321210 TCCACCATGATTGTTCGCGT 60.321 50.000 5.77 0.00 0.00 6.01
2216 5242 0.108992 ATTTCACCGCTGCAGCATTG 60.109 50.000 36.03 29.63 42.21 2.82
2259 5285 1.415289 CCAGCAGCCATGAGACAGATA 59.585 52.381 0.00 0.00 0.00 1.98
2266 5292 3.067461 AGCCATGAGACAGATAAGACGAC 59.933 47.826 0.00 0.00 0.00 4.34
2276 5302 4.336993 ACAGATAAGACGACTCCATGTCTC 59.663 45.833 0.00 0.00 44.36 3.36
2287 5313 1.136891 TCCATGTCTCATGGCAGTACG 59.863 52.381 20.08 0.24 39.01 3.67
2288 5314 1.134699 CCATGTCTCATGGCAGTACGT 60.135 52.381 14.50 0.00 31.75 3.57
2289 5315 2.621338 CATGTCTCATGGCAGTACGTT 58.379 47.619 0.00 0.00 0.00 3.99
2290 5316 2.831685 TGTCTCATGGCAGTACGTTT 57.168 45.000 0.00 0.00 0.00 3.60
2291 5317 3.120321 TGTCTCATGGCAGTACGTTTT 57.880 42.857 0.00 0.00 0.00 2.43
2292 5318 3.472652 TGTCTCATGGCAGTACGTTTTT 58.527 40.909 0.00 0.00 0.00 1.94
2293 5319 3.249799 TGTCTCATGGCAGTACGTTTTTG 59.750 43.478 0.00 0.00 0.00 2.44
2294 5320 2.811431 TCTCATGGCAGTACGTTTTTGG 59.189 45.455 0.00 0.00 0.00 3.28
2295 5321 1.883275 TCATGGCAGTACGTTTTTGGG 59.117 47.619 0.00 0.00 0.00 4.12
2296 5322 1.883275 CATGGCAGTACGTTTTTGGGA 59.117 47.619 0.00 0.00 0.00 4.37
2297 5323 2.279935 TGGCAGTACGTTTTTGGGAT 57.720 45.000 0.00 0.00 0.00 3.85
2298 5324 2.588620 TGGCAGTACGTTTTTGGGATT 58.411 42.857 0.00 0.00 0.00 3.01
2299 5325 3.752665 TGGCAGTACGTTTTTGGGATTA 58.247 40.909 0.00 0.00 0.00 1.75
2300 5326 4.337145 TGGCAGTACGTTTTTGGGATTAT 58.663 39.130 0.00 0.00 0.00 1.28
2301 5327 4.396790 TGGCAGTACGTTTTTGGGATTATC 59.603 41.667 0.00 0.00 0.00 1.75
2302 5328 4.638865 GGCAGTACGTTTTTGGGATTATCT 59.361 41.667 0.00 0.00 0.00 1.98
2303 5329 5.448632 GGCAGTACGTTTTTGGGATTATCTG 60.449 44.000 0.00 0.00 0.00 2.90
2304 5330 5.123344 GCAGTACGTTTTTGGGATTATCTGT 59.877 40.000 0.00 0.00 0.00 3.41
2305 5331 6.349033 GCAGTACGTTTTTGGGATTATCTGTT 60.349 38.462 0.00 0.00 0.00 3.16
2306 5332 7.590279 CAGTACGTTTTTGGGATTATCTGTTT 58.410 34.615 0.00 0.00 0.00 2.83
2307 5333 8.079809 CAGTACGTTTTTGGGATTATCTGTTTT 58.920 33.333 0.00 0.00 0.00 2.43
2308 5334 8.635328 AGTACGTTTTTGGGATTATCTGTTTTT 58.365 29.630 0.00 0.00 0.00 1.94
2367 5393 3.006677 GGCCAGCCCATGTAAGGA 58.993 61.111 0.00 0.00 0.00 3.36
2368 5394 1.453928 GGCCAGCCCATGTAAGGAC 60.454 63.158 0.00 0.00 0.00 3.85
2369 5395 1.453928 GCCAGCCCATGTAAGGACC 60.454 63.158 0.00 0.00 0.00 4.46
2370 5396 1.153168 CCAGCCCATGTAAGGACCG 60.153 63.158 0.00 0.00 0.00 4.79
2371 5397 1.153168 CAGCCCATGTAAGGACCGG 60.153 63.158 0.00 0.00 0.00 5.28
2372 5398 1.615424 AGCCCATGTAAGGACCGGT 60.615 57.895 6.92 6.92 0.00 5.28
2373 5399 1.205460 AGCCCATGTAAGGACCGGTT 61.205 55.000 9.42 0.00 0.00 4.44
2374 5400 0.323087 GCCCATGTAAGGACCGGTTT 60.323 55.000 9.42 1.75 0.00 3.27
2375 5401 1.889262 GCCCATGTAAGGACCGGTTTT 60.889 52.381 9.42 9.66 0.00 2.43
2376 5402 2.521126 CCCATGTAAGGACCGGTTTTT 58.479 47.619 9.42 9.26 0.00 1.94
2377 5403 2.490509 CCCATGTAAGGACCGGTTTTTC 59.509 50.000 9.42 5.51 0.00 2.29
2378 5404 3.418047 CCATGTAAGGACCGGTTTTTCT 58.582 45.455 9.42 1.28 0.00 2.52
2379 5405 3.824443 CCATGTAAGGACCGGTTTTTCTT 59.176 43.478 9.42 12.97 0.00 2.52
2380 5406 4.279922 CCATGTAAGGACCGGTTTTTCTTT 59.720 41.667 9.42 0.32 0.00 2.52
2381 5407 5.221362 CCATGTAAGGACCGGTTTTTCTTTT 60.221 40.000 9.42 0.00 0.00 2.27
2382 5408 6.016108 CCATGTAAGGACCGGTTTTTCTTTTA 60.016 38.462 9.42 4.32 0.00 1.52
2383 5409 6.375945 TGTAAGGACCGGTTTTTCTTTTAC 57.624 37.500 9.42 10.45 0.00 2.01
2384 5410 4.556942 AAGGACCGGTTTTTCTTTTACG 57.443 40.909 9.42 0.00 0.00 3.18
2385 5411 2.291465 AGGACCGGTTTTTCTTTTACGC 59.709 45.455 9.42 0.00 0.00 4.42
2386 5412 2.033174 GGACCGGTTTTTCTTTTACGCA 59.967 45.455 9.42 0.00 0.00 5.24
2387 5413 3.488890 GGACCGGTTTTTCTTTTACGCAA 60.489 43.478 9.42 0.00 0.00 4.85
2388 5414 4.104066 GACCGGTTTTTCTTTTACGCAAA 58.896 39.130 9.42 0.00 0.00 3.68
2389 5415 4.492611 ACCGGTTTTTCTTTTACGCAAAA 58.507 34.783 0.00 0.00 32.73 2.44
2391 5417 4.501646 CGGTTTTTCTTTTACGCAAAAGC 58.498 39.130 14.80 2.23 46.84 3.51
2392 5418 4.266739 CGGTTTTTCTTTTACGCAAAAGCT 59.733 37.500 14.80 0.00 46.84 3.74
2393 5419 5.456173 CGGTTTTTCTTTTACGCAAAAGCTA 59.544 36.000 14.80 4.19 46.84 3.32
2394 5420 6.020520 CGGTTTTTCTTTTACGCAAAAGCTAA 60.021 34.615 14.80 9.27 46.84 3.09
2395 5421 7.306341 CGGTTTTTCTTTTACGCAAAAGCTAAT 60.306 33.333 14.80 0.00 46.84 1.73
2396 5422 8.332464 GGTTTTTCTTTTACGCAAAAGCTAATT 58.668 29.630 14.80 0.00 46.84 1.40
2397 5423 9.697250 GTTTTTCTTTTACGCAAAAGCTAATTT 57.303 25.926 14.80 0.00 46.84 1.82
2398 5424 9.909043 TTTTTCTTTTACGCAAAAGCTAATTTC 57.091 25.926 14.80 0.00 46.84 2.17
2399 5425 7.631915 TTCTTTTACGCAAAAGCTAATTTCC 57.368 32.000 14.80 0.00 46.84 3.13
2400 5426 6.977213 TCTTTTACGCAAAAGCTAATTTCCT 58.023 32.000 14.80 0.00 46.84 3.36
2401 5427 8.101654 TCTTTTACGCAAAAGCTAATTTCCTA 57.898 30.769 14.80 0.00 46.84 2.94
2402 5428 8.736244 TCTTTTACGCAAAAGCTAATTTCCTAT 58.264 29.630 14.80 0.00 46.84 2.57
2403 5429 8.905103 TTTTACGCAAAAGCTAATTTCCTATC 57.095 30.769 0.00 0.00 0.00 2.08
2404 5430 5.156804 ACGCAAAAGCTAATTTCCTATCG 57.843 39.130 0.00 0.00 0.00 2.92
2405 5431 4.873827 ACGCAAAAGCTAATTTCCTATCGA 59.126 37.500 0.00 0.00 0.00 3.59
2406 5432 5.198274 CGCAAAAGCTAATTTCCTATCGAC 58.802 41.667 0.00 0.00 0.00 4.20
2407 5433 5.006746 CGCAAAAGCTAATTTCCTATCGACT 59.993 40.000 0.00 0.00 0.00 4.18
2408 5434 6.195165 GCAAAAGCTAATTTCCTATCGACTG 58.805 40.000 0.00 0.00 0.00 3.51
2409 5435 6.719365 CAAAAGCTAATTTCCTATCGACTGG 58.281 40.000 0.00 0.00 0.00 4.00
2410 5436 5.615925 AAGCTAATTTCCTATCGACTGGT 57.384 39.130 5.57 0.00 0.00 4.00
2411 5437 5.203060 AGCTAATTTCCTATCGACTGGTC 57.797 43.478 5.57 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.771160 CCGGTACTGCGCCCTTCT 61.771 66.667 4.18 0.00 0.00 2.85
64 65 2.994995 TGTGGTGGCCTCGACGAT 60.995 61.111 14.16 0.00 0.00 3.73
79 80 0.403271 AGCTTGCTTGGACATCCTGT 59.597 50.000 0.00 0.00 36.82 4.00
132 133 1.758936 TCTCCAACTCGGCTTCGATA 58.241 50.000 0.00 0.00 42.46 2.92
145 147 2.617276 CCTCTTGCTGCTTCATCTCCAA 60.617 50.000 0.00 0.00 0.00 3.53
177 179 4.277476 TCTTTTTGGTTTCTTCTGCTCCA 58.723 39.130 0.00 0.00 0.00 3.86
179 181 4.683320 GCATCTTTTTGGTTTCTTCTGCTC 59.317 41.667 0.00 0.00 0.00 4.26
195 198 1.084018 TCCTCTTTGGGGGCATCTTT 58.916 50.000 0.00 0.00 36.20 2.52
209 212 0.810016 GTCTCTACGCCGTTTCCTCT 59.190 55.000 0.00 0.00 0.00 3.69
240 243 2.109387 CGGGGTTCCACGTGTTGA 59.891 61.111 15.65 2.20 0.00 3.18
242 245 4.259131 CCCGGGGTTCCACGTGTT 62.259 66.667 14.71 0.00 0.00 3.32
262 266 3.226777 TCAGATCCCGAGAGAAATCTCC 58.773 50.000 6.81 0.00 43.88 3.71
297 304 2.034053 GTCGAGTTTGGCATTGTTTCCA 59.966 45.455 0.00 0.00 0.00 3.53
367 374 3.365265 GGCACTGCCGGGTGAAAG 61.365 66.667 14.27 0.00 39.62 2.62
471 478 1.960689 GTTGTTGCTTCTTTGGCCCTA 59.039 47.619 0.00 0.00 0.00 3.53
487 495 1.218854 GTACGGCCCGGTATGTTGT 59.781 57.895 8.57 0.00 0.00 3.32
503 511 1.972795 ACAAGAAAGGGTAGCCACGTA 59.027 47.619 14.62 0.00 0.00 3.57
504 512 0.763035 ACAAGAAAGGGTAGCCACGT 59.237 50.000 14.62 0.00 0.00 4.49
505 513 1.892209 AACAAGAAAGGGTAGCCACG 58.108 50.000 14.62 0.00 0.00 4.94
506 514 3.244805 ACCTAACAAGAAAGGGTAGCCAC 60.245 47.826 14.62 4.27 37.18 5.01
507 515 2.983898 ACCTAACAAGAAAGGGTAGCCA 59.016 45.455 14.62 0.00 37.18 4.75
508 516 3.715638 ACCTAACAAGAAAGGGTAGCC 57.284 47.619 1.60 1.60 37.18 3.93
509 517 5.066117 GCATAACCTAACAAGAAAGGGTAGC 59.934 44.000 0.00 0.00 38.44 3.58
510 518 6.415573 AGCATAACCTAACAAGAAAGGGTAG 58.584 40.000 0.00 0.00 38.44 3.18
511 519 6.382919 AGCATAACCTAACAAGAAAGGGTA 57.617 37.500 0.00 0.00 39.36 3.69
512 520 5.256806 AGCATAACCTAACAAGAAAGGGT 57.743 39.130 0.00 0.00 37.18 4.34
513 521 7.696992 TTAAGCATAACCTAACAAGAAAGGG 57.303 36.000 0.00 0.00 37.18 3.95
514 522 8.122952 CGATTAAGCATAACCTAACAAGAAAGG 58.877 37.037 0.00 0.00 38.93 3.11
515 523 8.879759 TCGATTAAGCATAACCTAACAAGAAAG 58.120 33.333 0.00 0.00 0.00 2.62
516 524 8.662141 GTCGATTAAGCATAACCTAACAAGAAA 58.338 33.333 0.00 0.00 0.00 2.52
517 525 7.279313 GGTCGATTAAGCATAACCTAACAAGAA 59.721 37.037 0.00 0.00 0.00 2.52
518 526 6.759827 GGTCGATTAAGCATAACCTAACAAGA 59.240 38.462 0.00 0.00 0.00 3.02
519 527 6.018180 GGGTCGATTAAGCATAACCTAACAAG 60.018 42.308 6.81 0.00 0.00 3.16
520 528 5.818857 GGGTCGATTAAGCATAACCTAACAA 59.181 40.000 6.81 0.00 0.00 2.83
521 529 5.129815 AGGGTCGATTAAGCATAACCTAACA 59.870 40.000 0.00 0.00 0.00 2.41
522 530 5.608449 AGGGTCGATTAAGCATAACCTAAC 58.392 41.667 0.00 0.00 0.00 2.34
523 531 5.881923 AGGGTCGATTAAGCATAACCTAA 57.118 39.130 0.00 0.00 0.00 2.69
524 532 5.881923 AAGGGTCGATTAAGCATAACCTA 57.118 39.130 0.41 0.00 0.00 3.08
525 533 4.772886 AAGGGTCGATTAAGCATAACCT 57.227 40.909 6.81 1.21 0.00 3.50
526 534 4.497507 GCAAAGGGTCGATTAAGCATAACC 60.498 45.833 0.00 0.00 0.00 2.85
527 535 4.335594 AGCAAAGGGTCGATTAAGCATAAC 59.664 41.667 0.00 0.00 0.00 1.89
528 536 4.335315 CAGCAAAGGGTCGATTAAGCATAA 59.665 41.667 0.00 0.00 0.00 1.90
529 537 3.876914 CAGCAAAGGGTCGATTAAGCATA 59.123 43.478 0.00 0.00 0.00 3.14
530 538 2.684881 CAGCAAAGGGTCGATTAAGCAT 59.315 45.455 0.00 0.00 0.00 3.79
531 539 2.083774 CAGCAAAGGGTCGATTAAGCA 58.916 47.619 0.00 0.00 0.00 3.91
532 540 1.401905 CCAGCAAAGGGTCGATTAAGC 59.598 52.381 0.00 0.00 0.00 3.09
533 541 2.939103 CTCCAGCAAAGGGTCGATTAAG 59.061 50.000 0.00 0.00 0.00 1.85
534 542 2.355716 CCTCCAGCAAAGGGTCGATTAA 60.356 50.000 0.00 0.00 0.00 1.40
535 543 1.209504 CCTCCAGCAAAGGGTCGATTA 59.790 52.381 0.00 0.00 0.00 1.75
536 544 0.035056 CCTCCAGCAAAGGGTCGATT 60.035 55.000 0.00 0.00 0.00 3.34
539 547 2.747855 GCCTCCAGCAAAGGGTCG 60.748 66.667 1.79 0.00 42.97 4.79
542 550 2.362120 CAGGCCTCCAGCAAAGGG 60.362 66.667 0.00 0.00 46.50 3.95
565 573 2.435586 GGATGCTGTGTGCGAGCT 60.436 61.111 0.00 0.00 46.63 4.09
639 663 6.531948 CACTCATGAACCTAGTTAGTTAGTGC 59.468 42.308 0.00 0.00 0.00 4.40
660 687 4.049186 TGCAAAAGAGAACTACGTCACTC 58.951 43.478 0.00 0.00 0.00 3.51
661 688 4.054780 TGCAAAAGAGAACTACGTCACT 57.945 40.909 0.00 0.00 0.00 3.41
662 689 4.789095 TTGCAAAAGAGAACTACGTCAC 57.211 40.909 0.00 0.00 0.00 3.67
663 690 4.260051 CGTTTGCAAAAGAGAACTACGTCA 60.260 41.667 18.79 0.00 0.00 4.35
664 691 4.026310 TCGTTTGCAAAAGAGAACTACGTC 60.026 41.667 21.60 1.11 0.00 4.34
667 694 6.044512 TCTTCGTTTGCAAAAGAGAACTAC 57.955 37.500 23.56 5.15 0.00 2.73
670 704 4.205181 GCTTCTTCGTTTGCAAAAGAGAAC 59.795 41.667 23.56 17.89 31.16 3.01
689 723 2.715737 AGTCTCGAGTGAGTTGCTTC 57.284 50.000 13.13 0.00 43.09 3.86
726 775 5.712446 TGCATCTACTCTACCTAGCCAATAG 59.288 44.000 0.00 0.00 0.00 1.73
727 776 5.641155 TGCATCTACTCTACCTAGCCAATA 58.359 41.667 0.00 0.00 0.00 1.90
728 777 4.483950 TGCATCTACTCTACCTAGCCAAT 58.516 43.478 0.00 0.00 0.00 3.16
729 778 3.910989 TGCATCTACTCTACCTAGCCAA 58.089 45.455 0.00 0.00 0.00 4.52
832 1567 1.085091 CGAGCGTAGAGTAGGTGTGT 58.915 55.000 0.00 0.00 0.00 3.72
944 1701 2.516888 CGGGGTTGTGAGGAGTGGT 61.517 63.158 0.00 0.00 0.00 4.16
965 1739 2.740055 CGGCAGTGAGTGGAGTGC 60.740 66.667 0.00 0.00 40.94 4.40
1020 1794 2.537143 AGGTAAGAGATTCCGTGGTGT 58.463 47.619 0.00 0.00 0.00 4.16
1035 1809 0.252375 ACTCTTGGGGGCGTAGGTAA 60.252 55.000 0.00 0.00 0.00 2.85
1036 1810 0.685458 GACTCTTGGGGGCGTAGGTA 60.685 60.000 0.00 0.00 0.00 3.08
1046 1829 0.184933 TGGTTGGTTGGACTCTTGGG 59.815 55.000 0.00 0.00 0.00 4.12
1073 1856 2.474816 GACCGCTGGAGAATGTATGTC 58.525 52.381 1.50 0.00 0.00 3.06
1214 2042 4.760047 GTGGGAGCCGTCGTGCAT 62.760 66.667 8.15 0.00 0.00 3.96
1472 2319 4.488660 ATGGCTACCACGCTAAGCTAGC 62.489 54.545 6.62 6.62 41.09 3.42
1484 2331 1.667236 CGCAATTCTCATGGCTACCA 58.333 50.000 0.00 0.00 38.19 3.25
1503 2350 0.524414 ACGAAACAAAATAGGGCGGC 59.476 50.000 0.00 0.00 0.00 6.53
1504 2351 2.486592 AGAACGAAACAAAATAGGGCGG 59.513 45.455 0.00 0.00 0.00 6.13
1505 2352 3.824414 AGAACGAAACAAAATAGGGCG 57.176 42.857 0.00 0.00 0.00 6.13
1506 2353 8.528917 AAATAAAGAACGAAACAAAATAGGGC 57.471 30.769 0.00 0.00 0.00 5.19
1530 2377 2.678470 GGCACGGTTGGGGGATAA 59.322 61.111 0.00 0.00 0.00 1.75
1544 2391 3.385749 GGCCTAGCTAGTTGCGGCA 62.386 63.158 19.31 0.00 45.89 5.69
1551 2398 1.764054 CCTGCAGGGCCTAGCTAGT 60.764 63.158 26.14 0.00 0.00 2.57
1561 2408 1.926511 GAACACAATCGCCTGCAGGG 61.927 60.000 33.46 22.73 35.18 4.45
1608 2474 1.468506 TTCGCCACTGAGTACAGCCA 61.469 55.000 0.00 0.00 46.95 4.75
1616 2482 2.685388 TCTCTGTAGATTCGCCACTGAG 59.315 50.000 12.50 12.50 38.73 3.35
1618 2484 3.510388 TTCTCTGTAGATTCGCCACTG 57.490 47.619 0.00 0.00 0.00 3.66
1620 2486 4.034510 CCATTTTCTCTGTAGATTCGCCAC 59.965 45.833 0.00 0.00 0.00 5.01
1621 2487 4.081142 TCCATTTTCTCTGTAGATTCGCCA 60.081 41.667 0.00 0.00 0.00 5.69
1622 2488 4.442706 TCCATTTTCTCTGTAGATTCGCC 58.557 43.478 0.00 0.00 0.00 5.54
1623 2489 4.509600 CCTCCATTTTCTCTGTAGATTCGC 59.490 45.833 0.00 0.00 0.00 4.70
1625 2491 5.819901 CACCCTCCATTTTCTCTGTAGATTC 59.180 44.000 0.00 0.00 0.00 2.52
1626 2492 5.339530 CCACCCTCCATTTTCTCTGTAGATT 60.340 44.000 0.00 0.00 0.00 2.40
1627 2493 4.164988 CCACCCTCCATTTTCTCTGTAGAT 59.835 45.833 0.00 0.00 0.00 1.98
1628 2494 3.519510 CCACCCTCCATTTTCTCTGTAGA 59.480 47.826 0.00 0.00 0.00 2.59
1629 2495 3.370953 CCCACCCTCCATTTTCTCTGTAG 60.371 52.174 0.00 0.00 0.00 2.74
1633 2499 0.332972 GCCCACCCTCCATTTTCTCT 59.667 55.000 0.00 0.00 0.00 3.10
1636 2502 0.972471 CCAGCCCACCCTCCATTTTC 60.972 60.000 0.00 0.00 0.00 2.29
1637 2503 1.079073 CCAGCCCACCCTCCATTTT 59.921 57.895 0.00 0.00 0.00 1.82
1638 2504 2.772924 CCAGCCCACCCTCCATTT 59.227 61.111 0.00 0.00 0.00 2.32
1639 2505 3.350163 CCCAGCCCACCCTCCATT 61.350 66.667 0.00 0.00 0.00 3.16
1640 2506 4.701437 ACCCAGCCCACCCTCCAT 62.701 66.667 0.00 0.00 0.00 3.41
1641 2507 4.938756 AACCCAGCCCACCCTCCA 62.939 66.667 0.00 0.00 0.00 3.86
1651 2517 1.027357 CATGACATAGGCAACCCAGC 58.973 55.000 0.00 0.00 37.17 4.85
1652 2518 1.027357 GCATGACATAGGCAACCCAG 58.973 55.000 0.00 0.00 35.80 4.45
1653 2519 0.747644 CGCATGACATAGGCAACCCA 60.748 55.000 0.00 0.00 35.37 4.51
1654 2520 0.463654 TCGCATGACATAGGCAACCC 60.464 55.000 0.00 0.00 35.37 4.11
1655 2521 1.378531 TTCGCATGACATAGGCAACC 58.621 50.000 0.00 0.00 35.37 3.77
1656 2522 6.092670 ACATATATTCGCATGACATAGGCAAC 59.907 38.462 0.00 0.00 35.37 4.17
1657 2523 6.172630 ACATATATTCGCATGACATAGGCAA 58.827 36.000 0.00 0.00 35.37 4.52
1658 2524 5.733676 ACATATATTCGCATGACATAGGCA 58.266 37.500 0.00 0.00 35.37 4.75
1659 2525 6.092670 ACAACATATATTCGCATGACATAGGC 59.907 38.462 0.00 0.00 0.00 3.93
1660 2526 7.601073 ACAACATATATTCGCATGACATAGG 57.399 36.000 0.00 0.00 0.00 2.57
1663 2529 9.830294 CAAATACAACATATATTCGCATGACAT 57.170 29.630 0.00 0.00 0.00 3.06
1664 2530 8.288913 CCAAATACAACATATATTCGCATGACA 58.711 33.333 0.00 0.00 0.00 3.58
1665 2531 7.271223 GCCAAATACAACATATATTCGCATGAC 59.729 37.037 0.00 0.00 0.00 3.06
1666 2532 7.174772 AGCCAAATACAACATATATTCGCATGA 59.825 33.333 0.00 0.00 0.00 3.07
1667 2533 7.307694 AGCCAAATACAACATATATTCGCATG 58.692 34.615 0.00 0.00 0.00 4.06
1668 2534 7.452880 AGCCAAATACAACATATATTCGCAT 57.547 32.000 0.00 0.00 0.00 4.73
1669 2535 6.875948 AGCCAAATACAACATATATTCGCA 57.124 33.333 0.00 0.00 0.00 5.10
1670 2536 8.286800 TGTTAGCCAAATACAACATATATTCGC 58.713 33.333 0.00 0.00 0.00 4.70
1686 2552 5.303971 CAATCCAACCATTTGTTAGCCAAA 58.696 37.500 0.00 0.00 46.59 3.28
1687 2553 4.262808 CCAATCCAACCATTTGTTAGCCAA 60.263 41.667 0.00 0.00 34.69 4.52
1688 2554 3.260380 CCAATCCAACCATTTGTTAGCCA 59.740 43.478 0.00 0.00 34.69 4.75
1689 2555 3.369366 CCCAATCCAACCATTTGTTAGCC 60.369 47.826 0.00 0.00 34.69 3.93
1690 2556 3.860641 CCCAATCCAACCATTTGTTAGC 58.139 45.455 0.00 0.00 34.69 3.09
1691 2557 3.369366 GGCCCAATCCAACCATTTGTTAG 60.369 47.826 0.00 0.00 34.69 2.34
1692 2558 2.569404 GGCCCAATCCAACCATTTGTTA 59.431 45.455 0.00 0.00 34.69 2.41
1693 2559 1.350684 GGCCCAATCCAACCATTTGTT 59.649 47.619 0.00 0.00 37.80 2.83
1694 2560 0.983467 GGCCCAATCCAACCATTTGT 59.017 50.000 0.00 0.00 0.00 2.83
1695 2561 1.278537 AGGCCCAATCCAACCATTTG 58.721 50.000 0.00 0.00 0.00 2.32
1696 2562 2.043307 AAGGCCCAATCCAACCATTT 57.957 45.000 0.00 0.00 0.00 2.32
1697 2563 2.043307 AAAGGCCCAATCCAACCATT 57.957 45.000 0.00 0.00 0.00 3.16
1698 2564 2.938428 TAAAGGCCCAATCCAACCAT 57.062 45.000 0.00 0.00 0.00 3.55
1699 2565 2.635427 GTTTAAAGGCCCAATCCAACCA 59.365 45.455 0.00 0.00 0.00 3.67
1700 2566 2.903784 AGTTTAAAGGCCCAATCCAACC 59.096 45.455 0.00 0.00 0.00 3.77
1701 2567 5.731957 TTAGTTTAAAGGCCCAATCCAAC 57.268 39.130 0.00 0.00 0.00 3.77
1702 2568 7.186268 ACTATTAGTTTAAAGGCCCAATCCAA 58.814 34.615 0.00 0.00 0.00 3.53
1703 2569 6.737608 ACTATTAGTTTAAAGGCCCAATCCA 58.262 36.000 0.00 0.00 0.00 3.41
1704 2570 8.756486 TTACTATTAGTTTAAAGGCCCAATCC 57.244 34.615 0.00 0.00 0.00 3.01
1708 2574 9.590828 AGTTTTTACTATTAGTTTAAAGGCCCA 57.409 29.630 0.00 0.00 0.00 5.36
1724 2590 9.255304 CCAGCTTTGCAAAATTAGTTTTTACTA 57.745 29.630 13.84 0.00 35.75 1.82
1725 2591 7.984617 TCCAGCTTTGCAAAATTAGTTTTTACT 59.015 29.630 13.84 0.00 35.75 2.24
1726 2592 8.137210 TCCAGCTTTGCAAAATTAGTTTTTAC 57.863 30.769 13.84 0.00 35.75 2.01
1727 2593 7.440856 CCTCCAGCTTTGCAAAATTAGTTTTTA 59.559 33.333 13.84 0.00 35.75 1.52
1728 2594 6.260714 CCTCCAGCTTTGCAAAATTAGTTTTT 59.739 34.615 13.84 0.00 38.05 1.94
1729 2595 5.759763 CCTCCAGCTTTGCAAAATTAGTTTT 59.240 36.000 13.84 0.00 38.03 2.43
1730 2596 5.299949 CCTCCAGCTTTGCAAAATTAGTTT 58.700 37.500 13.84 0.00 0.00 2.66
1731 2597 4.262592 CCCTCCAGCTTTGCAAAATTAGTT 60.263 41.667 13.84 0.00 0.00 2.24
1732 2598 3.259123 CCCTCCAGCTTTGCAAAATTAGT 59.741 43.478 13.84 0.00 0.00 2.24
1733 2599 3.368739 CCCCTCCAGCTTTGCAAAATTAG 60.369 47.826 13.84 2.16 0.00 1.73
1734 2600 2.566724 CCCCTCCAGCTTTGCAAAATTA 59.433 45.455 13.84 0.00 0.00 1.40
1735 2601 1.348696 CCCCTCCAGCTTTGCAAAATT 59.651 47.619 13.84 1.17 0.00 1.82
1736 2602 0.978907 CCCCTCCAGCTTTGCAAAAT 59.021 50.000 13.84 1.86 0.00 1.82
1737 2603 1.120795 CCCCCTCCAGCTTTGCAAAA 61.121 55.000 13.84 0.00 0.00 2.44
1738 2604 1.533753 CCCCCTCCAGCTTTGCAAA 60.534 57.895 12.14 12.14 0.00 3.68
1739 2605 2.118076 CCCCCTCCAGCTTTGCAA 59.882 61.111 0.00 0.00 0.00 4.08
1765 2631 5.612351 GAATCTACTAGGGGCTTTAACAGG 58.388 45.833 0.00 0.00 0.00 4.00
1766 2632 5.290386 CGAATCTACTAGGGGCTTTAACAG 58.710 45.833 0.00 0.00 0.00 3.16
1767 2633 4.442472 GCGAATCTACTAGGGGCTTTAACA 60.442 45.833 0.00 0.00 0.00 2.41
1768 2634 4.056740 GCGAATCTACTAGGGGCTTTAAC 58.943 47.826 0.00 0.00 0.00 2.01
1769 2635 3.965347 AGCGAATCTACTAGGGGCTTTAA 59.035 43.478 0.00 0.00 0.00 1.52
1770 2636 3.573695 AGCGAATCTACTAGGGGCTTTA 58.426 45.455 0.00 0.00 0.00 1.85
1771 2637 2.399580 AGCGAATCTACTAGGGGCTTT 58.600 47.619 0.00 0.00 0.00 3.51
1772 2638 2.089600 AGCGAATCTACTAGGGGCTT 57.910 50.000 0.00 0.00 0.00 4.35
1773 2639 2.516906 GTAGCGAATCTACTAGGGGCT 58.483 52.381 0.00 0.00 43.37 5.19
1781 2647 2.100916 TGGAGCCAAGTAGCGAATCTAC 59.899 50.000 0.00 0.00 46.30 2.59
1782 2648 2.384828 TGGAGCCAAGTAGCGAATCTA 58.615 47.619 0.00 0.00 38.01 1.98
1783 2649 1.195115 TGGAGCCAAGTAGCGAATCT 58.805 50.000 0.00 0.00 38.01 2.40
1784 2650 2.246719 ATGGAGCCAAGTAGCGAATC 57.753 50.000 0.00 0.00 38.01 2.52
1785 2651 2.092968 TCAATGGAGCCAAGTAGCGAAT 60.093 45.455 0.00 0.00 38.01 3.34
1786 2652 1.277842 TCAATGGAGCCAAGTAGCGAA 59.722 47.619 0.00 0.00 38.01 4.70
1787 2653 0.901827 TCAATGGAGCCAAGTAGCGA 59.098 50.000 0.00 0.00 38.01 4.93
1788 2654 1.737838 TTCAATGGAGCCAAGTAGCG 58.262 50.000 0.00 0.00 38.01 4.26
1789 2655 4.427312 CAAATTCAATGGAGCCAAGTAGC 58.573 43.478 0.00 0.00 0.00 3.58
1792 2658 2.568509 CCCAAATTCAATGGAGCCAAGT 59.431 45.455 0.00 0.00 40.56 3.16
1819 4694 2.031012 TGTTCCTGCAGCTCCACG 59.969 61.111 8.66 0.00 0.00 4.94
1821 4696 0.321671 GTAGTGTTCCTGCAGCTCCA 59.678 55.000 8.66 0.32 0.00 3.86
1863 4738 2.290641 GCAGGCACCAAGGTTTATATCG 59.709 50.000 0.00 0.00 0.00 2.92
1880 4793 0.317770 ACATTTGAAACGCACGCAGG 60.318 50.000 0.00 0.00 0.00 4.85
1883 4796 0.775861 GGAACATTTGAAACGCACGC 59.224 50.000 0.00 0.00 0.00 5.34
1884 4797 2.043411 CAGGAACATTTGAAACGCACG 58.957 47.619 0.00 0.00 0.00 5.34
1885 4798 3.347958 TCAGGAACATTTGAAACGCAC 57.652 42.857 0.00 0.00 0.00 5.34
1907 4820 5.789643 ATGAAGAGAGGATTCTGTAGAGC 57.210 43.478 0.00 0.00 32.53 4.09
1915 4828 9.970395 CAGAGCATATATATGAAGAGAGGATTC 57.030 37.037 24.06 4.16 35.75 2.52
1972 4889 1.372997 CAACCTCCGTCGGTGACTG 60.373 63.158 14.81 7.43 37.36 3.51
1988 4959 3.673866 CGATCACTTTGATGCAATGCCAA 60.674 43.478 1.53 0.00 37.20 4.52
2014 4985 9.200817 AGCAATTATTTTACTATCACCAACCAT 57.799 29.630 0.00 0.00 0.00 3.55
2024 4995 5.526111 ACGTCGCCAGCAATTATTTTACTAT 59.474 36.000 0.00 0.00 0.00 2.12
2030 5001 1.062002 CGACGTCGCCAGCAATTATTT 59.938 47.619 26.59 0.00 0.00 1.40
2082 5053 4.589700 CACGCGCACACACACACC 62.590 66.667 5.73 0.00 0.00 4.16
2096 5113 2.606961 AATGCCAGTCACACGCACG 61.607 57.895 0.00 0.00 34.87 5.34
2100 5117 2.260154 TGCCAATGCCAGTCACACG 61.260 57.895 0.00 0.00 36.33 4.49
2131 5157 2.164422 TCTCTCTCACGCGAACAATCAT 59.836 45.455 15.93 0.00 0.00 2.45
2132 5158 1.539827 TCTCTCTCACGCGAACAATCA 59.460 47.619 15.93 0.00 0.00 2.57
2143 5169 0.894184 TGGGACACCGTCTCTCTCAC 60.894 60.000 0.00 0.00 40.75 3.51
2144 5170 1.458927 TGGGACACCGTCTCTCTCA 59.541 57.895 0.00 0.00 40.75 3.27
2185 5211 2.894879 TGAAATCGCCGCCCATCG 60.895 61.111 0.00 0.00 38.08 3.84
2231 5257 0.681887 CATGGCTGCTGGTTCATCCA 60.682 55.000 0.00 0.00 45.01 3.41
2232 5258 0.394762 TCATGGCTGCTGGTTCATCC 60.395 55.000 0.00 0.00 0.00 3.51
2266 5292 2.800985 CGTACTGCCATGAGACATGGAG 60.801 54.545 27.90 22.65 41.64 3.86
2276 5302 1.883275 TCCCAAAAACGTACTGCCATG 59.117 47.619 0.00 0.00 0.00 3.66
2307 5333 3.841845 TCCTGGATCCCTCTCGTTAAAAA 59.158 43.478 9.90 0.00 0.00 1.94
2308 5334 3.197116 GTCCTGGATCCCTCTCGTTAAAA 59.803 47.826 9.90 0.00 0.00 1.52
2309 5335 2.764572 GTCCTGGATCCCTCTCGTTAAA 59.235 50.000 9.90 0.00 0.00 1.52
2310 5336 2.385803 GTCCTGGATCCCTCTCGTTAA 58.614 52.381 9.90 0.00 0.00 2.01
2311 5337 1.749635 CGTCCTGGATCCCTCTCGTTA 60.750 57.143 9.90 0.00 0.00 3.18
2312 5338 1.038130 CGTCCTGGATCCCTCTCGTT 61.038 60.000 9.90 0.00 0.00 3.85
2313 5339 1.454111 CGTCCTGGATCCCTCTCGT 60.454 63.158 9.90 0.00 0.00 4.18
2322 5348 1.213296 ATAGGGTTTGCGTCCTGGAT 58.787 50.000 0.00 0.00 34.75 3.41
2367 5393 3.779271 TTGCGTAAAAGAAAAACCGGT 57.221 38.095 0.00 0.00 0.00 5.28
2385 5411 6.316390 ACCAGTCGATAGGAAATTAGCTTTTG 59.684 38.462 12.43 0.00 0.00 2.44
2386 5412 6.415573 ACCAGTCGATAGGAAATTAGCTTTT 58.584 36.000 12.43 0.00 0.00 2.27
2387 5413 5.990668 ACCAGTCGATAGGAAATTAGCTTT 58.009 37.500 12.43 0.00 0.00 3.51
2388 5414 5.602628 GACCAGTCGATAGGAAATTAGCTT 58.397 41.667 12.43 0.00 0.00 3.74
2389 5415 5.203060 GACCAGTCGATAGGAAATTAGCT 57.797 43.478 12.43 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.