Multiple sequence alignment - TraesCS7D01G463600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G463600 chr7D 100.000 5351 0 0 1 5351 578789362 578794712 0.000000e+00 9882.0
1 TraesCS7D01G463600 chr7D 87.348 1312 154 7 2930 4235 578779981 578781286 0.000000e+00 1493.0
2 TraesCS7D01G463600 chr6A 94.068 2596 136 9 2763 5351 74241093 74238509 0.000000e+00 3925.0
3 TraesCS7D01G463600 chr6A 94.407 590 26 4 1801 2390 74241744 74241162 0.000000e+00 900.0
4 TraesCS7D01G463600 chr6A 95.188 478 8 4 1325 1802 74242289 74241827 0.000000e+00 741.0
5 TraesCS7D01G463600 chr6A 95.810 358 3 2 982 1327 74246263 74245906 7.780000e-158 568.0
6 TraesCS7D01G463600 chr6A 87.988 333 34 3 2438 2764 383079874 383080206 6.500000e-104 388.0
7 TraesCS7D01G463600 chr6A 91.736 242 13 3 725 964 74246555 74246319 4.000000e-86 329.0
8 TraesCS7D01G463600 chr6A 78.175 252 53 2 1299 1549 74233149 74232899 5.550000e-35 159.0
9 TraesCS7D01G463600 chr6A 93.243 74 5 0 648 721 48554773 48554700 5.670000e-20 110.0
10 TraesCS7D01G463600 chr6A 86.364 88 8 3 1193 1280 22953162 22953245 5.710000e-15 93.5
11 TraesCS7D01G463600 chr6A 98.039 51 1 0 2385 2435 74241143 74241093 7.380000e-14 89.8
12 TraesCS7D01G463600 chr7B 91.077 2600 188 16 2763 5351 642745842 642748408 0.000000e+00 3476.0
13 TraesCS7D01G463600 chr7B 92.877 1404 94 5 3013 4413 642751193 642752593 0.000000e+00 2034.0
14 TraesCS7D01G463600 chr7B 86.200 1442 175 15 2925 4357 642502744 642504170 0.000000e+00 1539.0
15 TraesCS7D01G463600 chr7B 87.876 1295 145 9 2932 4221 642567237 642568524 0.000000e+00 1511.0
16 TraesCS7D01G463600 chr7B 89.244 939 87 10 4414 5351 642752853 642753778 0.000000e+00 1162.0
17 TraesCS7D01G463600 chr7B 89.691 776 54 10 1008 1772 642738133 642738893 0.000000e+00 966.0
18 TraesCS7D01G463600 chr7B 79.446 1192 217 18 2968 4158 642779808 642778644 0.000000e+00 819.0
19 TraesCS7D01G463600 chr7B 90.909 616 31 9 1771 2380 642738925 642739521 0.000000e+00 804.0
20 TraesCS7D01G463600 chr7B 77.273 880 120 33 725 1549 642499195 642500049 1.370000e-120 444.0
21 TraesCS7D01G463600 chr7B 91.815 281 19 3 1 279 642705118 642705396 6.500000e-104 388.0
22 TraesCS7D01G463600 chr7B 91.444 187 7 2 824 1006 642705926 642706107 1.150000e-61 248.0
23 TraesCS7D01G463600 chr7B 91.250 80 7 0 571 650 642705430 642705509 5.670000e-20 110.0
24 TraesCS7D01G463600 chr7B 93.056 72 4 1 725 795 642705508 642705579 2.640000e-18 104.0
25 TraesCS7D01G463600 chr7B 98.039 51 0 1 2385 2435 642745793 642745842 2.650000e-13 87.9
26 TraesCS7D01G463600 chr5A 80.141 1133 200 17 3043 4158 649193991 649192867 0.000000e+00 822.0
27 TraesCS7D01G463600 chr5A 85.771 253 31 5 276 527 663304021 663303773 4.110000e-66 263.0
28 TraesCS7D01G463600 chr5A 88.608 79 4 2 1193 1270 565612452 565612378 2.050000e-14 91.6
29 TraesCS7D01G463600 chr5B 80.000 1065 194 14 2947 3997 546095211 546094152 0.000000e+00 769.0
30 TraesCS7D01G463600 chr5B 84.404 109 12 3 1163 1270 546097017 546096913 9.480000e-18 102.0
31 TraesCS7D01G463600 chr6B 80.967 972 162 16 3033 3990 37632894 37633856 0.000000e+00 749.0
32 TraesCS7D01G463600 chr6B 92.208 77 4 1 2431 2505 5351597 5351673 2.040000e-19 108.0
33 TraesCS7D01G463600 chr6B 96.078 51 2 0 2385 2435 39177056 39177006 3.430000e-12 84.2
34 TraesCS7D01G463600 chr7A 79.424 972 178 14 3032 3988 733434324 733433360 0.000000e+00 667.0
35 TraesCS7D01G463600 chr7A 87.572 346 38 4 2423 2764 12552697 12553041 3.880000e-106 396.0
36 TraesCS7D01G463600 chr7A 86.307 241 31 2 276 514 711188204 711187964 1.480000e-65 261.0
37 TraesCS7D01G463600 chr7A 86.325 234 31 1 282 514 711219347 711219114 2.470000e-63 254.0
38 TraesCS7D01G463600 chr3A 90.448 335 28 3 2440 2771 507632285 507632618 6.360000e-119 438.0
39 TraesCS7D01G463600 chr3A 89.458 332 29 5 2435 2763 14767152 14767480 1.070000e-111 414.0
40 TraesCS7D01G463600 chr3A 87.688 333 38 3 2431 2763 19566829 19567158 8.410000e-103 385.0
41 TraesCS7D01G463600 chr3A 83.197 244 39 1 276 519 637571081 637571322 6.980000e-54 222.0
42 TraesCS7D01G463600 chr3A 80.435 138 19 6 1193 1329 742228593 742228463 1.230000e-16 99.0
43 TraesCS7D01G463600 chr3A 80.435 138 19 5 1193 1329 742326999 742326869 1.230000e-16 99.0
44 TraesCS7D01G463600 chr3A 80.000 135 21 3 1196 1330 742243121 742242993 1.590000e-15 95.3
45 TraesCS7D01G463600 chr4D 90.312 320 30 1 2437 2756 215249895 215250213 8.290000e-113 418.0
46 TraesCS7D01G463600 chr4D 91.205 307 25 2 2457 2763 480466843 480467147 2.980000e-112 416.0
47 TraesCS7D01G463600 chr4D 89.558 249 21 5 282 527 51076102 51076348 1.450000e-80 311.0
48 TraesCS7D01G463600 chr3D 90.645 310 28 1 2455 2763 124386770 124387079 1.390000e-110 411.0
49 TraesCS7D01G463600 chr3D 91.935 62 5 0 2325 2386 547513536 547513475 2.650000e-13 87.9
50 TraesCS7D01G463600 chr2A 90.291 309 29 1 2456 2763 297234161 297234469 2.320000e-108 403.0
51 TraesCS7D01G463600 chr2A 90.361 83 7 1 639 721 681252173 681252254 2.040000e-19 108.0
52 TraesCS7D01G463600 chr6D 92.735 234 17 0 282 515 389297209 389297442 6.640000e-89 339.0
53 TraesCS7D01G463600 chr6D 78.142 183 25 12 1193 1369 24377769 24377596 9.480000e-18 102.0
54 TraesCS7D01G463600 chr6D 82.278 79 10 3 1202 1280 24384035 24383961 1.240000e-06 65.8
55 TraesCS7D01G463600 chr1B 88.288 222 22 2 282 499 433422814 433423035 4.110000e-66 263.0
56 TraesCS7D01G463600 chr1B 88.618 123 13 1 2764 2885 39389978 39390100 1.200000e-31 148.0
57 TraesCS7D01G463600 chr1B 96.000 75 2 1 2431 2505 502972482 502972409 2.620000e-23 121.0
58 TraesCS7D01G463600 chr1B 94.366 71 4 0 649 719 637346584 637346514 5.670000e-20 110.0
59 TraesCS7D01G463600 chr1B 89.583 48 5 0 2340 2387 608865270 608865317 1.610000e-05 62.1
60 TraesCS7D01G463600 chr1D 87.225 227 27 2 286 512 38724453 38724229 1.910000e-64 257.0
61 TraesCS7D01G463600 chr1D 85.169 236 31 3 288 522 319918482 319918250 6.930000e-59 239.0
62 TraesCS7D01G463600 chr1D 88.889 126 12 2 2763 2887 387470113 387470237 2.580000e-33 154.0
63 TraesCS7D01G463600 chr3B 91.538 130 9 2 2756 2885 773168774 773168901 1.530000e-40 178.0
64 TraesCS7D01G463600 chr3B 79.259 135 20 6 1196 1329 819284899 819284772 2.650000e-13 87.9
65 TraesCS7D01G463600 chr1A 89.516 124 10 3 2764 2885 110060995 110061117 2.580000e-33 154.0
66 TraesCS7D01G463600 chr4A 88.710 124 13 1 2764 2886 674616916 674616793 3.340000e-32 150.0
67 TraesCS7D01G463600 chr4A 88.618 123 12 2 2764 2885 578766273 578766394 1.200000e-31 148.0
68 TraesCS7D01G463600 chr4A 94.366 71 4 0 649 719 640248505 640248435 5.670000e-20 110.0
69 TraesCS7D01G463600 chr4B 88.710 124 11 3 2764 2885 601937228 601937350 1.200000e-31 148.0
70 TraesCS7D01G463600 chr4B 94.444 72 4 0 649 720 662002383 662002312 1.580000e-20 111.0
71 TraesCS7D01G463600 chr4B 92.208 77 5 1 649 724 209849574 209849650 2.040000e-19 108.0
72 TraesCS7D01G463600 chr4B 93.151 73 5 0 649 721 221112264 221112192 2.040000e-19 108.0
73 TraesCS7D01G463600 chr5D 73.319 461 89 21 1103 1548 520745563 520745122 7.230000e-29 139.0
74 TraesCS7D01G463600 chr5D 83.486 109 13 3 1163 1270 447396812 447396708 4.410000e-16 97.1
75 TraesCS7D01G463600 chr5D 87.059 85 10 1 1193 1276 447389801 447389717 1.590000e-15 95.3
76 TraesCS7D01G463600 chr2B 93.506 77 5 0 645 721 368979579 368979503 1.220000e-21 115.0
77 TraesCS7D01G463600 chr2D 93.333 75 5 0 647 721 593132215 593132141 1.580000e-20 111.0
78 TraesCS7D01G463600 chr2D 81.818 77 9 4 2429 2505 53669466 53669395 5.790000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G463600 chr7D 578789362 578794712 5350 False 9882.000000 9882 100.000000 1 5351 1 chr7D.!!$F2 5350
1 TraesCS7D01G463600 chr7D 578779981 578781286 1305 False 1493.000000 1493 87.348000 2930 4235 1 chr7D.!!$F1 1305
2 TraesCS7D01G463600 chr6A 74238509 74246555 8046 True 1092.133333 3925 94.874667 725 5351 6 chr6A.!!$R3 4626
3 TraesCS7D01G463600 chr7B 642745793 642753778 7985 False 1689.975000 3476 92.809250 2385 5351 4 chr7B.!!$F5 2966
4 TraesCS7D01G463600 chr7B 642567237 642568524 1287 False 1511.000000 1511 87.876000 2932 4221 1 chr7B.!!$F1 1289
5 TraesCS7D01G463600 chr7B 642499195 642504170 4975 False 991.500000 1539 81.736500 725 4357 2 chr7B.!!$F2 3632
6 TraesCS7D01G463600 chr7B 642738133 642739521 1388 False 885.000000 966 90.300000 1008 2380 2 chr7B.!!$F4 1372
7 TraesCS7D01G463600 chr7B 642778644 642779808 1164 True 819.000000 819 79.446000 2968 4158 1 chr7B.!!$R1 1190
8 TraesCS7D01G463600 chr7B 642705118 642706107 989 False 212.500000 388 91.891250 1 1006 4 chr7B.!!$F3 1005
9 TraesCS7D01G463600 chr5A 649192867 649193991 1124 True 822.000000 822 80.141000 3043 4158 1 chr5A.!!$R2 1115
10 TraesCS7D01G463600 chr5B 546094152 546097017 2865 True 435.500000 769 82.202000 1163 3997 2 chr5B.!!$R1 2834
11 TraesCS7D01G463600 chr6B 37632894 37633856 962 False 749.000000 749 80.967000 3033 3990 1 chr6B.!!$F2 957
12 TraesCS7D01G463600 chr7A 733433360 733434324 964 True 667.000000 667 79.424000 3032 3988 1 chr7A.!!$R3 956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 365 0.034059 ACTTCAGTTGAGGCGAGGTG 59.966 55.0 0.00 0.0 0.00 4.00 F
454 457 0.107268 AACCCCGCGTGAACTAAAGT 59.893 50.0 4.92 0.0 0.00 2.66 F
455 458 0.107268 ACCCCGCGTGAACTAAAGTT 59.893 50.0 4.92 0.0 41.64 2.66 F
483 486 0.109319 AAACGTTCGGATTGCCATGC 60.109 50.0 0.00 0.0 0.00 4.06 F
1729 5821 0.245266 TTCGAACGGCAGCATCTACA 59.755 50.0 0.00 0.0 0.00 2.74 F
2503 8673 0.036306 ATTCTTGGTTTCGTCCCGCT 59.964 50.0 0.00 0.0 0.00 5.52 F
2594 8841 0.106149 ACGGAGGAAACACACCTGAC 59.894 55.0 0.00 0.0 37.93 3.51 F
2696 8943 0.179150 GCCACGCACAGTTTGTTTGA 60.179 50.0 0.00 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 8155 0.036952 CAGCCGACACTTGTGAGGAT 60.037 55.000 18.23 12.21 0.00 3.24 R
2106 8160 0.391661 ATAGCCAGCCGACACTTGTG 60.392 55.000 0.00 0.00 0.00 3.33 R
2179 8233 1.231221 GTGTGTTGGTACATTCGCCA 58.769 50.000 0.00 0.00 39.30 5.69 R
2478 8648 3.626217 GGGACGAAACCAAGAATATCACC 59.374 47.826 0.00 0.00 0.00 4.02 R
2575 8822 0.106149 GTCAGGTGTGTTTCCTCCGT 59.894 55.000 0.00 0.00 32.37 4.69 R
3981 10249 0.109532 TCCGTGGATGTTTGAAGGCA 59.890 50.000 0.00 0.00 0.00 4.75 R
4039 10307 0.534873 AATTATTGCAACGCCACCCC 59.465 50.000 0.00 0.00 0.00 4.95 R
4688 16323 0.674581 CTCAACGCTCATGGCTTCCA 60.675 55.000 0.00 0.00 39.13 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 195 5.716703 AGGTCAAACATAGAGAATTTTGGGG 59.283 40.000 0.00 0.00 31.20 4.96
270 273 5.593679 TCTATTAAGGAACGGAAGGAGTG 57.406 43.478 0.00 0.00 0.00 3.51
271 274 5.021458 TCTATTAAGGAACGGAAGGAGTGT 58.979 41.667 0.00 0.00 0.00 3.55
272 275 6.189859 TCTATTAAGGAACGGAAGGAGTGTA 58.810 40.000 0.00 0.00 0.00 2.90
273 276 5.952347 ATTAAGGAACGGAAGGAGTGTAT 57.048 39.130 0.00 0.00 0.00 2.29
274 277 8.000709 TCTATTAAGGAACGGAAGGAGTGTATA 58.999 37.037 0.00 0.00 0.00 1.47
275 278 7.613551 ATTAAGGAACGGAAGGAGTGTATAT 57.386 36.000 0.00 0.00 0.00 0.86
276 279 5.952347 AAGGAACGGAAGGAGTGTATATT 57.048 39.130 0.00 0.00 0.00 1.28
277 280 5.952347 AGGAACGGAAGGAGTGTATATTT 57.048 39.130 0.00 0.00 0.00 1.40
278 281 6.309389 AGGAACGGAAGGAGTGTATATTTT 57.691 37.500 0.00 0.00 0.00 1.82
279 282 6.113411 AGGAACGGAAGGAGTGTATATTTTG 58.887 40.000 0.00 0.00 0.00 2.44
280 283 5.878669 GGAACGGAAGGAGTGTATATTTTGT 59.121 40.000 0.00 0.00 0.00 2.83
281 284 7.043565 GGAACGGAAGGAGTGTATATTTTGTA 58.956 38.462 0.00 0.00 0.00 2.41
282 285 7.010830 GGAACGGAAGGAGTGTATATTTTGTAC 59.989 40.741 0.00 0.00 0.00 2.90
283 286 6.343703 ACGGAAGGAGTGTATATTTTGTACC 58.656 40.000 0.00 0.00 0.00 3.34
284 287 6.155737 ACGGAAGGAGTGTATATTTTGTACCT 59.844 38.462 0.00 0.00 0.00 3.08
285 288 6.700520 CGGAAGGAGTGTATATTTTGTACCTC 59.299 42.308 0.00 0.00 0.00 3.85
286 289 6.700520 GGAAGGAGTGTATATTTTGTACCTCG 59.299 42.308 0.00 0.00 0.00 4.63
287 290 7.414222 AAGGAGTGTATATTTTGTACCTCGA 57.586 36.000 0.00 0.00 0.00 4.04
288 291 7.598759 AGGAGTGTATATTTTGTACCTCGAT 57.401 36.000 0.00 0.00 0.00 3.59
289 292 8.701908 AGGAGTGTATATTTTGTACCTCGATA 57.298 34.615 0.00 0.00 0.00 2.92
290 293 9.139734 AGGAGTGTATATTTTGTACCTCGATAA 57.860 33.333 0.00 0.00 0.00 1.75
291 294 9.754382 GGAGTGTATATTTTGTACCTCGATAAA 57.246 33.333 0.00 0.00 0.00 1.40
295 298 9.715121 TGTATATTTTGTACCTCGATAAATCCC 57.285 33.333 0.00 0.00 0.00 3.85
296 299 7.900782 ATATTTTGTACCTCGATAAATCCCG 57.099 36.000 0.00 0.00 0.00 5.14
297 300 5.341872 TTTTGTACCTCGATAAATCCCGA 57.658 39.130 0.00 0.00 0.00 5.14
298 301 5.341872 TTTGTACCTCGATAAATCCCGAA 57.658 39.130 0.00 0.00 34.17 4.30
299 302 5.341872 TTGTACCTCGATAAATCCCGAAA 57.658 39.130 0.00 0.00 34.17 3.46
300 303 4.685924 TGTACCTCGATAAATCCCGAAAC 58.314 43.478 0.00 0.00 34.17 2.78
301 304 4.403432 TGTACCTCGATAAATCCCGAAACT 59.597 41.667 0.00 0.00 34.17 2.66
302 305 4.482952 ACCTCGATAAATCCCGAAACTT 57.517 40.909 0.00 0.00 34.17 2.66
303 306 4.439968 ACCTCGATAAATCCCGAAACTTC 58.560 43.478 0.00 0.00 34.17 3.01
317 320 5.914997 CGAAACTTCGGATTTTAAGCATG 57.085 39.130 3.91 0.00 46.30 4.06
318 321 5.390613 CGAAACTTCGGATTTTAAGCATGT 58.609 37.500 3.91 0.00 46.30 3.21
319 322 5.508224 CGAAACTTCGGATTTTAAGCATGTC 59.492 40.000 3.91 0.00 46.30 3.06
320 323 5.957842 AACTTCGGATTTTAAGCATGTCA 57.042 34.783 0.00 0.00 0.00 3.58
321 324 6.515272 AACTTCGGATTTTAAGCATGTCAT 57.485 33.333 0.00 0.00 0.00 3.06
322 325 6.124088 ACTTCGGATTTTAAGCATGTCATC 57.876 37.500 0.00 0.00 0.00 2.92
323 326 5.066505 ACTTCGGATTTTAAGCATGTCATCC 59.933 40.000 0.00 0.00 0.00 3.51
324 327 3.882888 TCGGATTTTAAGCATGTCATCCC 59.117 43.478 0.00 0.00 0.00 3.85
325 328 3.303990 CGGATTTTAAGCATGTCATCCCG 60.304 47.826 0.00 0.00 0.00 5.14
326 329 3.882888 GGATTTTAAGCATGTCATCCCGA 59.117 43.478 0.00 0.00 0.00 5.14
327 330 4.338118 GGATTTTAAGCATGTCATCCCGAA 59.662 41.667 0.00 0.00 0.00 4.30
328 331 4.695217 TTTTAAGCATGTCATCCCGAAC 57.305 40.909 0.00 0.00 0.00 3.95
329 332 1.934589 TAAGCATGTCATCCCGAACG 58.065 50.000 0.00 0.00 0.00 3.95
330 333 0.036388 AAGCATGTCATCCCGAACGT 60.036 50.000 0.00 0.00 0.00 3.99
331 334 0.036388 AGCATGTCATCCCGAACGTT 60.036 50.000 0.00 0.00 0.00 3.99
332 335 0.802494 GCATGTCATCCCGAACGTTT 59.198 50.000 0.46 0.00 0.00 3.60
333 336 1.199097 GCATGTCATCCCGAACGTTTT 59.801 47.619 0.46 0.00 0.00 2.43
334 337 2.351350 GCATGTCATCCCGAACGTTTTT 60.351 45.455 0.46 0.00 0.00 1.94
360 363 3.614399 AACTTCAGTTGAGGCGAGG 57.386 52.632 0.00 0.00 36.80 4.63
361 364 0.759346 AACTTCAGTTGAGGCGAGGT 59.241 50.000 0.00 0.00 36.80 3.85
362 365 0.034059 ACTTCAGTTGAGGCGAGGTG 59.966 55.000 0.00 0.00 0.00 4.00
363 366 0.671781 CTTCAGTTGAGGCGAGGTGG 60.672 60.000 0.00 0.00 0.00 4.61
364 367 2.731691 TTCAGTTGAGGCGAGGTGGC 62.732 60.000 0.00 0.00 45.27 5.01
371 374 2.281484 GGCGAGGTGGCAACTTCA 60.281 61.111 6.46 0.00 44.08 3.02
372 375 2.328099 GGCGAGGTGGCAACTTCAG 61.328 63.158 6.46 2.61 44.08 3.02
373 376 1.598130 GCGAGGTGGCAACTTCAGT 60.598 57.895 6.46 0.00 32.03 3.41
374 377 1.166531 GCGAGGTGGCAACTTCAGTT 61.167 55.000 6.46 0.00 39.12 3.16
388 391 5.590530 ACTTCAGTTGTTAAAACATGGCA 57.409 34.783 0.00 0.00 38.95 4.92
389 392 5.971763 ACTTCAGTTGTTAAAACATGGCAA 58.028 33.333 0.00 0.00 38.95 4.52
390 393 5.810074 ACTTCAGTTGTTAAAACATGGCAAC 59.190 36.000 0.00 0.00 38.95 4.17
392 395 5.971763 TCAGTTGTTAAAACATGGCAACTT 58.028 33.333 5.62 0.00 44.79 2.66
393 396 6.402222 TCAGTTGTTAAAACATGGCAACTTT 58.598 32.000 5.62 0.00 44.79 2.66
394 397 6.312426 TCAGTTGTTAAAACATGGCAACTTTG 59.688 34.615 5.62 0.00 44.79 2.77
395 398 6.091986 CAGTTGTTAAAACATGGCAACTTTGT 59.908 34.615 5.62 0.00 44.79 2.83
396 399 6.312672 AGTTGTTAAAACATGGCAACTTTGTC 59.687 34.615 0.00 0.00 44.79 3.18
397 400 4.800993 TGTTAAAACATGGCAACTTTGTCG 59.199 37.500 0.00 0.00 32.41 4.35
398 401 1.851658 AAACATGGCAACTTTGTCGC 58.148 45.000 0.00 0.00 35.00 5.19
399 402 0.743688 AACATGGCAACTTTGTCGCA 59.256 45.000 0.00 0.00 35.00 5.10
400 403 0.311790 ACATGGCAACTTTGTCGCAG 59.688 50.000 0.00 0.00 35.00 5.18
401 404 0.311790 CATGGCAACTTTGTCGCAGT 59.688 50.000 0.00 0.00 35.00 4.40
402 405 1.032014 ATGGCAACTTTGTCGCAGTT 58.968 45.000 0.00 0.00 35.00 3.16
403 406 0.814457 TGGCAACTTTGTCGCAGTTT 59.186 45.000 0.00 0.00 35.00 2.66
404 407 2.017782 TGGCAACTTTGTCGCAGTTTA 58.982 42.857 0.00 0.00 35.00 2.01
405 408 2.621055 TGGCAACTTTGTCGCAGTTTAT 59.379 40.909 0.00 0.00 35.00 1.40
406 409 3.067461 TGGCAACTTTGTCGCAGTTTATT 59.933 39.130 0.00 0.00 35.00 1.40
407 410 4.048504 GGCAACTTTGTCGCAGTTTATTT 58.951 39.130 0.00 0.00 31.83 1.40
408 411 4.506288 GGCAACTTTGTCGCAGTTTATTTT 59.494 37.500 0.00 0.00 31.83 1.82
409 412 5.006261 GGCAACTTTGTCGCAGTTTATTTTT 59.994 36.000 0.00 0.00 31.83 1.94
432 435 8.961294 TTTTTGTCCAAAAATTGTCATGTTTG 57.039 26.923 12.58 0.00 43.08 2.93
433 436 5.731599 TGTCCAAAAATTGTCATGTTTGC 57.268 34.783 0.00 0.00 36.57 3.68
434 437 4.574013 TGTCCAAAAATTGTCATGTTTGCC 59.426 37.500 0.00 0.00 36.57 4.52
435 438 4.574013 GTCCAAAAATTGTCATGTTTGCCA 59.426 37.500 0.00 0.00 36.57 4.92
436 439 5.065731 GTCCAAAAATTGTCATGTTTGCCAA 59.934 36.000 0.00 0.00 36.57 4.52
437 440 5.065731 TCCAAAAATTGTCATGTTTGCCAAC 59.934 36.000 0.00 0.00 36.57 3.77
438 441 5.272397 CAAAAATTGTCATGTTTGCCAACC 58.728 37.500 0.00 0.00 32.01 3.77
439 442 2.837532 ATTGTCATGTTTGCCAACCC 57.162 45.000 0.00 0.00 31.02 4.11
440 443 0.755686 TTGTCATGTTTGCCAACCCC 59.244 50.000 0.00 0.00 31.02 4.95
441 444 1.288752 GTCATGTTTGCCAACCCCG 59.711 57.895 0.00 0.00 31.02 5.73
442 445 2.048316 CATGTTTGCCAACCCCGC 60.048 61.111 0.00 0.00 31.02 6.13
443 446 3.679738 ATGTTTGCCAACCCCGCG 61.680 61.111 0.00 0.00 31.02 6.46
445 448 4.639171 GTTTGCCAACCCCGCGTG 62.639 66.667 4.92 0.00 0.00 5.34
446 449 4.877619 TTTGCCAACCCCGCGTGA 62.878 61.111 4.92 0.00 0.00 4.35
447 450 4.877619 TTGCCAACCCCGCGTGAA 62.878 61.111 4.92 0.00 0.00 3.18
450 453 2.344500 CCAACCCCGCGTGAACTA 59.656 61.111 4.92 0.00 0.00 2.24
451 454 1.301874 CCAACCCCGCGTGAACTAA 60.302 57.895 4.92 0.00 0.00 2.24
452 455 0.885596 CCAACCCCGCGTGAACTAAA 60.886 55.000 4.92 0.00 0.00 1.85
453 456 0.515564 CAACCCCGCGTGAACTAAAG 59.484 55.000 4.92 0.00 0.00 1.85
454 457 0.107268 AACCCCGCGTGAACTAAAGT 59.893 50.000 4.92 0.00 0.00 2.66
455 458 0.107268 ACCCCGCGTGAACTAAAGTT 59.893 50.000 4.92 0.00 41.64 2.66
456 459 1.344114 ACCCCGCGTGAACTAAAGTTA 59.656 47.619 4.92 0.00 38.56 2.24
457 460 1.728425 CCCCGCGTGAACTAAAGTTAC 59.272 52.381 4.92 0.00 38.56 2.50
458 461 1.728425 CCCGCGTGAACTAAAGTTACC 59.272 52.381 4.92 0.00 38.56 2.85
459 462 2.406130 CCGCGTGAACTAAAGTTACCA 58.594 47.619 4.92 0.00 38.56 3.25
460 463 2.997986 CCGCGTGAACTAAAGTTACCAT 59.002 45.455 4.92 0.00 38.56 3.55
461 464 3.181524 CCGCGTGAACTAAAGTTACCATG 60.182 47.826 4.92 0.00 38.56 3.66
462 465 3.676172 CGCGTGAACTAAAGTTACCATGA 59.324 43.478 0.00 0.00 38.56 3.07
463 466 4.150980 CGCGTGAACTAAAGTTACCATGAA 59.849 41.667 0.00 0.00 38.56 2.57
464 467 5.333492 CGCGTGAACTAAAGTTACCATGAAA 60.333 40.000 0.00 0.00 38.56 2.69
465 468 6.432107 GCGTGAACTAAAGTTACCATGAAAA 58.568 36.000 0.00 0.00 38.56 2.29
466 469 6.913673 GCGTGAACTAAAGTTACCATGAAAAA 59.086 34.615 0.00 0.00 38.56 1.94
467 470 7.096763 GCGTGAACTAAAGTTACCATGAAAAAC 60.097 37.037 0.00 0.00 38.56 2.43
468 471 7.111041 CGTGAACTAAAGTTACCATGAAAAACG 59.889 37.037 0.00 0.00 38.56 3.60
469 472 7.911727 GTGAACTAAAGTTACCATGAAAAACGT 59.088 33.333 0.00 0.00 38.56 3.99
470 473 8.460428 TGAACTAAAGTTACCATGAAAAACGTT 58.540 29.630 0.00 0.00 38.56 3.99
471 474 8.845942 AACTAAAGTTACCATGAAAAACGTTC 57.154 30.769 0.00 0.00 36.32 3.95
472 475 7.127686 ACTAAAGTTACCATGAAAAACGTTCG 58.872 34.615 0.00 0.00 0.00 3.95
473 476 4.477302 AGTTACCATGAAAAACGTTCGG 57.523 40.909 0.00 0.00 0.00 4.30
474 477 4.128643 AGTTACCATGAAAAACGTTCGGA 58.871 39.130 0.00 0.00 0.00 4.55
475 478 4.758165 AGTTACCATGAAAAACGTTCGGAT 59.242 37.500 0.00 0.00 0.00 4.18
476 479 5.239963 AGTTACCATGAAAAACGTTCGGATT 59.760 36.000 0.00 0.00 0.00 3.01
477 480 3.896122 ACCATGAAAAACGTTCGGATTG 58.104 40.909 0.00 0.00 0.00 2.67
478 481 2.661195 CCATGAAAAACGTTCGGATTGC 59.339 45.455 0.00 0.00 0.00 3.56
479 482 2.409152 TGAAAAACGTTCGGATTGCC 57.591 45.000 0.00 0.00 0.00 4.52
480 483 1.676529 TGAAAAACGTTCGGATTGCCA 59.323 42.857 0.00 0.00 0.00 4.92
481 484 2.294791 TGAAAAACGTTCGGATTGCCAT 59.705 40.909 0.00 0.00 0.00 4.40
482 485 2.346099 AAAACGTTCGGATTGCCATG 57.654 45.000 0.00 0.00 0.00 3.66
483 486 0.109319 AAACGTTCGGATTGCCATGC 60.109 50.000 0.00 0.00 0.00 4.06
484 487 0.960364 AACGTTCGGATTGCCATGCT 60.960 50.000 0.00 0.00 0.00 3.79
485 488 0.960364 ACGTTCGGATTGCCATGCTT 60.960 50.000 0.00 0.00 0.00 3.91
486 489 1.013596 CGTTCGGATTGCCATGCTTA 58.986 50.000 0.00 0.00 0.00 3.09
487 490 1.400142 CGTTCGGATTGCCATGCTTAA 59.600 47.619 0.00 0.00 0.00 1.85
488 491 2.159448 CGTTCGGATTGCCATGCTTAAA 60.159 45.455 0.00 0.00 0.00 1.52
489 492 3.489059 CGTTCGGATTGCCATGCTTAAAT 60.489 43.478 0.00 0.00 0.00 1.40
490 493 4.432712 GTTCGGATTGCCATGCTTAAATT 58.567 39.130 0.00 0.00 0.00 1.82
491 494 4.305989 TCGGATTGCCATGCTTAAATTC 57.694 40.909 0.00 0.00 0.00 2.17
492 495 3.953612 TCGGATTGCCATGCTTAAATTCT 59.046 39.130 0.00 0.00 0.00 2.40
493 496 4.046462 CGGATTGCCATGCTTAAATTCTG 58.954 43.478 0.00 0.00 0.00 3.02
494 497 4.202040 CGGATTGCCATGCTTAAATTCTGA 60.202 41.667 0.00 0.00 0.00 3.27
495 498 5.663456 GGATTGCCATGCTTAAATTCTGAA 58.337 37.500 0.00 0.00 0.00 3.02
496 499 5.521372 GGATTGCCATGCTTAAATTCTGAAC 59.479 40.000 0.00 0.00 0.00 3.18
497 500 4.095410 TGCCATGCTTAAATTCTGAACG 57.905 40.909 0.00 0.00 0.00 3.95
498 501 3.505680 TGCCATGCTTAAATTCTGAACGT 59.494 39.130 0.00 0.00 0.00 3.99
499 502 4.022416 TGCCATGCTTAAATTCTGAACGTT 60.022 37.500 0.00 0.00 0.00 3.99
500 503 4.558860 GCCATGCTTAAATTCTGAACGTTC 59.441 41.667 21.42 21.42 0.00 3.95
501 504 4.788100 CCATGCTTAAATTCTGAACGTTCG 59.212 41.667 22.48 16.77 0.00 3.95
502 505 4.398549 TGCTTAAATTCTGAACGTTCGG 57.601 40.909 27.75 27.75 34.85 4.30
503 506 3.187637 TGCTTAAATTCTGAACGTTCGGG 59.812 43.478 31.38 21.86 34.32 5.14
504 507 3.434299 GCTTAAATTCTGAACGTTCGGGA 59.566 43.478 31.38 26.38 34.32 5.14
505 508 4.094442 GCTTAAATTCTGAACGTTCGGGAT 59.906 41.667 31.38 27.33 33.09 3.85
506 509 5.391629 GCTTAAATTCTGAACGTTCGGGATT 60.392 40.000 30.13 30.13 42.29 3.01
508 511 7.624764 GCTTAAATTCTGAACGTTCGGGATTTA 60.625 37.037 37.59 37.59 45.50 1.40
509 512 6.753107 AAATTCTGAACGTTCGGGATTTAT 57.247 33.333 38.02 24.63 45.50 1.40
510 513 6.753107 AATTCTGAACGTTCGGGATTTATT 57.247 33.333 30.13 19.27 38.35 1.40
511 514 7.852971 AATTCTGAACGTTCGGGATTTATTA 57.147 32.000 30.13 11.41 38.35 0.98
512 515 8.446599 AATTCTGAACGTTCGGGATTTATTAT 57.553 30.769 30.13 13.48 38.35 1.28
513 516 7.852971 TTCTGAACGTTCGGGATTTATTATT 57.147 32.000 31.38 0.00 34.32 1.40
514 517 7.852971 TCTGAACGTTCGGGATTTATTATTT 57.147 32.000 31.38 0.00 34.32 1.40
515 518 8.271312 TCTGAACGTTCGGGATTTATTATTTT 57.729 30.769 31.38 0.00 34.32 1.82
516 519 8.392612 TCTGAACGTTCGGGATTTATTATTTTC 58.607 33.333 31.38 0.95 34.32 2.29
517 520 7.181418 TGAACGTTCGGGATTTATTATTTTCG 58.819 34.615 22.48 0.00 0.00 3.46
548 551 4.621991 TCTTCTAAGTCTGTCACTTGCAC 58.378 43.478 0.00 0.00 45.60 4.57
556 559 1.866601 CTGTCACTTGCACGACATGAA 59.133 47.619 11.93 0.00 41.13 2.57
557 560 2.284190 TGTCACTTGCACGACATGAAA 58.716 42.857 0.00 0.00 37.23 2.69
561 564 1.238439 CTTGCACGACATGAAAGGGT 58.762 50.000 0.00 0.00 40.05 4.34
562 565 2.422597 CTTGCACGACATGAAAGGGTA 58.577 47.619 0.00 0.00 40.05 3.69
563 566 2.779755 TGCACGACATGAAAGGGTAT 57.220 45.000 0.00 0.00 0.00 2.73
564 567 2.627945 TGCACGACATGAAAGGGTATC 58.372 47.619 0.00 0.00 0.00 2.24
565 568 1.940613 GCACGACATGAAAGGGTATCC 59.059 52.381 0.00 0.00 0.00 2.59
566 569 2.201732 CACGACATGAAAGGGTATCCG 58.798 52.381 0.00 0.00 38.33 4.18
567 570 1.138266 ACGACATGAAAGGGTATCCGG 59.862 52.381 0.00 0.00 38.33 5.14
568 571 1.540363 CGACATGAAAGGGTATCCGGG 60.540 57.143 0.00 0.00 38.33 5.73
569 572 0.843984 ACATGAAAGGGTATCCGGGG 59.156 55.000 0.00 0.00 38.33 5.73
584 587 1.303643 GGGGGTGCTTCAACTCCAG 60.304 63.158 0.00 0.00 43.15 3.86
585 588 1.303643 GGGGTGCTTCAACTCCAGG 60.304 63.158 0.00 0.00 40.78 4.45
586 589 1.303643 GGGTGCTTCAACTCCAGGG 60.304 63.158 0.00 0.00 0.00 4.45
589 592 1.559682 GGTGCTTCAACTCCAGGGATA 59.440 52.381 0.00 0.00 0.00 2.59
606 609 6.183347 CAGGGATAAATGTTGGAGAAGTCTT 58.817 40.000 0.00 0.00 0.00 3.01
642 645 2.678336 CAGGCCCGACATAAAAGTCTTC 59.322 50.000 0.00 0.00 36.38 2.87
644 647 2.344025 GCCCGACATAAAAGTCTTCGT 58.656 47.619 0.00 0.00 36.38 3.85
650 653 6.237755 CCCGACATAAAAGTCTTCGTTGATAC 60.238 42.308 0.00 0.00 36.38 2.24
651 654 6.530534 CCGACATAAAAGTCTTCGTTGATACT 59.469 38.462 0.00 0.00 36.38 2.12
652 655 7.699391 CCGACATAAAAGTCTTCGTTGATACTA 59.301 37.037 0.00 0.00 36.38 1.82
653 656 8.521860 CGACATAAAAGTCTTCGTTGATACTAC 58.478 37.037 0.00 0.00 36.38 2.73
654 657 8.699283 ACATAAAAGTCTTCGTTGATACTACC 57.301 34.615 0.00 0.00 0.00 3.18
655 658 8.529476 ACATAAAAGTCTTCGTTGATACTACCT 58.471 33.333 0.00 0.00 0.00 3.08
656 659 9.021863 CATAAAAGTCTTCGTTGATACTACCTC 57.978 37.037 0.00 0.00 0.00 3.85
657 660 6.837471 AAAGTCTTCGTTGATACTACCTCT 57.163 37.500 0.00 0.00 0.00 3.69
658 661 5.821516 AGTCTTCGTTGATACTACCTCTG 57.178 43.478 0.00 0.00 0.00 3.35
659 662 5.254901 AGTCTTCGTTGATACTACCTCTGT 58.745 41.667 0.00 0.00 0.00 3.41
660 663 5.354792 AGTCTTCGTTGATACTACCTCTGTC 59.645 44.000 0.00 0.00 0.00 3.51
661 664 4.639310 TCTTCGTTGATACTACCTCTGTCC 59.361 45.833 0.00 0.00 0.00 4.02
662 665 4.232188 TCGTTGATACTACCTCTGTCCT 57.768 45.455 0.00 0.00 0.00 3.85
663 666 5.363562 TCGTTGATACTACCTCTGTCCTA 57.636 43.478 0.00 0.00 0.00 2.94
664 667 5.748402 TCGTTGATACTACCTCTGTCCTAA 58.252 41.667 0.00 0.00 0.00 2.69
665 668 6.182627 TCGTTGATACTACCTCTGTCCTAAA 58.817 40.000 0.00 0.00 0.00 1.85
666 669 6.660521 TCGTTGATACTACCTCTGTCCTAAAA 59.339 38.462 0.00 0.00 0.00 1.52
667 670 7.341256 TCGTTGATACTACCTCTGTCCTAAAAT 59.659 37.037 0.00 0.00 0.00 1.82
668 671 8.627403 CGTTGATACTACCTCTGTCCTAAAATA 58.373 37.037 0.00 0.00 0.00 1.40
695 698 8.732746 AAGAACATTTTTGACACTAGTGTAGT 57.267 30.769 27.98 14.29 45.05 2.73
720 723 9.498307 GTGTTAAAAACGATCTTATATTGTGGG 57.502 33.333 0.00 0.00 0.00 4.61
721 724 8.679100 TGTTAAAAACGATCTTATATTGTGGGG 58.321 33.333 0.00 0.00 0.00 4.96
722 725 8.895737 GTTAAAAACGATCTTATATTGTGGGGA 58.104 33.333 0.00 0.00 0.00 4.81
723 726 7.568199 AAAAACGATCTTATATTGTGGGGAG 57.432 36.000 0.00 0.00 0.00 4.30
747 753 7.564793 AGTAGTTTGGATTTTTGGAGCTTTTT 58.435 30.769 0.00 0.00 0.00 1.94
813 1151 3.047280 GATGAACGCGGTGCCACA 61.047 61.111 12.47 0.00 0.00 4.17
967 1352 6.237648 CGCGTAGTAATTGACGGAAATAGTTT 60.238 38.462 0.00 0.00 39.46 2.66
1417 5486 3.660111 GCAACGGCTTGTTCGGCT 61.660 61.111 0.00 0.00 39.29 5.52
1452 5529 3.391382 GGCCCCTACACGCTGTCT 61.391 66.667 0.00 0.00 0.00 3.41
1729 5821 0.245266 TTCGAACGGCAGCATCTACA 59.755 50.000 0.00 0.00 0.00 2.74
1886 6104 2.432628 GGAGTTGACCGACGGCAG 60.433 66.667 15.39 0.00 0.00 4.85
1948 6169 2.046314 GCAGCTGCCGGAAACCTA 60.046 61.111 28.76 0.00 34.31 3.08
2043 6267 8.732531 GGTTAATTTGCACTGGTTATACACTTA 58.267 33.333 0.00 0.00 0.00 2.24
2079 8103 4.860072 AGGCAGAAACGATTTTGACTTTC 58.140 39.130 0.00 0.00 0.00 2.62
2106 8160 9.883142 ATTCTTCCTTGATCGATAATAATCCTC 57.117 33.333 0.00 0.00 0.00 3.71
2115 8169 7.867909 TGATCGATAATAATCCTCACAAGTGTC 59.132 37.037 0.00 0.00 0.00 3.67
2122 8176 2.280797 TCACAAGTGTCGGCTGGC 60.281 61.111 0.00 0.00 0.00 4.85
2123 8177 2.281070 CACAAGTGTCGGCTGGCT 60.281 61.111 0.00 0.00 0.00 4.75
2126 8180 1.134818 CACAAGTGTCGGCTGGCTATA 60.135 52.381 0.00 0.00 0.00 1.31
2133 8187 4.051922 GTGTCGGCTGGCTATATATATGC 58.948 47.826 5.44 6.98 0.00 3.14
2179 8233 2.076863 GCAAAAGACACCGAGTGCTAT 58.923 47.619 4.23 0.00 36.98 2.97
2331 8385 3.615496 CACCGTTTTACATTACTCCCTCG 59.385 47.826 0.00 0.00 0.00 4.63
2481 8651 9.771140 ATCTATACCTACTATTAAAGGGAGGTG 57.229 37.037 19.35 7.96 42.61 4.00
2482 8652 8.963277 TCTATACCTACTATTAAAGGGAGGTGA 58.037 37.037 19.35 9.62 42.61 4.02
2483 8653 9.771140 CTATACCTACTATTAAAGGGAGGTGAT 57.229 37.037 19.35 13.04 42.61 3.06
2487 8657 9.102453 ACCTACTATTAAAGGGAGGTGATATTC 57.898 37.037 12.46 0.00 41.67 1.75
2488 8658 9.327731 CCTACTATTAAAGGGAGGTGATATTCT 57.672 37.037 2.18 0.00 31.00 2.40
2491 8661 8.440771 ACTATTAAAGGGAGGTGATATTCTTGG 58.559 37.037 0.00 0.00 0.00 3.61
2492 8662 6.652205 TTAAAGGGAGGTGATATTCTTGGT 57.348 37.500 0.00 0.00 0.00 3.67
2493 8663 5.536497 AAAGGGAGGTGATATTCTTGGTT 57.464 39.130 0.00 0.00 0.00 3.67
2494 8664 5.536497 AAGGGAGGTGATATTCTTGGTTT 57.464 39.130 0.00 0.00 0.00 3.27
2495 8665 5.117406 AGGGAGGTGATATTCTTGGTTTC 57.883 43.478 0.00 0.00 0.00 2.78
2497 8667 4.514401 GGAGGTGATATTCTTGGTTTCGT 58.486 43.478 0.00 0.00 0.00 3.85
2498 8668 4.571176 GGAGGTGATATTCTTGGTTTCGTC 59.429 45.833 0.00 0.00 0.00 4.20
2499 8669 4.514401 AGGTGATATTCTTGGTTTCGTCC 58.486 43.478 0.00 0.00 0.00 4.79
2500 8670 3.626217 GGTGATATTCTTGGTTTCGTCCC 59.374 47.826 0.00 0.00 0.00 4.46
2501 8671 3.308866 GTGATATTCTTGGTTTCGTCCCG 59.691 47.826 0.00 0.00 0.00 5.14
2502 8672 1.729284 TATTCTTGGTTTCGTCCCGC 58.271 50.000 0.00 0.00 0.00 6.13
2503 8673 0.036306 ATTCTTGGTTTCGTCCCGCT 59.964 50.000 0.00 0.00 0.00 5.52
2504 8674 0.179040 TTCTTGGTTTCGTCCCGCTT 60.179 50.000 0.00 0.00 0.00 4.68
2505 8675 0.179040 TCTTGGTTTCGTCCCGCTTT 60.179 50.000 0.00 0.00 0.00 3.51
2507 8677 0.748729 TTGGTTTCGTCCCGCTTTGT 60.749 50.000 0.00 0.00 0.00 2.83
2508 8678 0.748729 TGGTTTCGTCCCGCTTTGTT 60.749 50.000 0.00 0.00 0.00 2.83
2509 8679 0.382873 GGTTTCGTCCCGCTTTGTTT 59.617 50.000 0.00 0.00 0.00 2.83
2517 8764 2.050442 CGCTTTGTTTGGTCCCGC 60.050 61.111 0.00 0.00 0.00 6.13
2521 8768 1.338655 GCTTTGTTTGGTCCCGCTTTA 59.661 47.619 0.00 0.00 0.00 1.85
2522 8769 2.223852 GCTTTGTTTGGTCCCGCTTTAA 60.224 45.455 0.00 0.00 0.00 1.52
2525 8772 5.774630 CTTTGTTTGGTCCCGCTTTAATTA 58.225 37.500 0.00 0.00 0.00 1.40
2530 8777 6.869388 TGTTTGGTCCCGCTTTAATTAATTTC 59.131 34.615 5.91 0.00 0.00 2.17
2531 8778 6.591750 TTGGTCCCGCTTTAATTAATTTCA 57.408 33.333 5.91 0.00 0.00 2.69
2532 8779 5.956642 TGGTCCCGCTTTAATTAATTTCAC 58.043 37.500 5.91 0.00 0.00 3.18
2533 8780 5.477291 TGGTCCCGCTTTAATTAATTTCACA 59.523 36.000 5.91 0.00 0.00 3.58
2534 8781 6.153680 TGGTCCCGCTTTAATTAATTTCACAT 59.846 34.615 5.91 0.00 0.00 3.21
2535 8782 7.339721 TGGTCCCGCTTTAATTAATTTCACATA 59.660 33.333 5.91 0.00 0.00 2.29
2536 8783 7.646526 GGTCCCGCTTTAATTAATTTCACATAC 59.353 37.037 5.91 0.00 0.00 2.39
2537 8784 7.375017 GTCCCGCTTTAATTAATTTCACATACG 59.625 37.037 5.91 2.52 0.00 3.06
2541 8788 9.594038 CGCTTTAATTAATTTCACATACGCTAT 57.406 29.630 5.91 0.00 0.00 2.97
2552 8799 3.592059 ACATACGCTATGTGGTTTCGTT 58.408 40.909 9.05 0.00 46.94 3.85
2553 8800 4.746729 ACATACGCTATGTGGTTTCGTTA 58.253 39.130 9.05 0.00 46.94 3.18
2554 8801 4.563976 ACATACGCTATGTGGTTTCGTTAC 59.436 41.667 9.05 0.00 46.94 2.50
2556 8803 3.656559 ACGCTATGTGGTTTCGTTACTT 58.343 40.909 0.00 0.00 0.00 2.24
2558 8805 3.723835 CGCTATGTGGTTTCGTTACTTGC 60.724 47.826 0.00 0.00 0.00 4.01
2559 8806 3.425758 GCTATGTGGTTTCGTTACTTGCC 60.426 47.826 0.00 0.00 0.00 4.52
2560 8807 2.039818 TGTGGTTTCGTTACTTGCCA 57.960 45.000 0.00 0.00 0.00 4.92
2561 8808 1.671845 TGTGGTTTCGTTACTTGCCAC 59.328 47.619 0.00 0.00 44.60 5.01
2562 8809 1.002142 GTGGTTTCGTTACTTGCCACC 60.002 52.381 0.00 0.00 40.12 4.61
2564 8811 0.236449 GTTTCGTTACTTGCCACCCG 59.764 55.000 0.00 0.00 0.00 5.28
2565 8812 0.179051 TTTCGTTACTTGCCACCCGT 60.179 50.000 0.00 0.00 0.00 5.28
2566 8813 0.179051 TTCGTTACTTGCCACCCGTT 60.179 50.000 0.00 0.00 0.00 4.44
2570 8817 1.033574 TTACTTGCCACCCGTTTTGG 58.966 50.000 0.00 0.00 37.17 3.28
2575 8822 2.840102 CCACCCGTTTTGGCCCAA 60.840 61.111 0.00 0.00 35.87 4.12
2577 8824 3.220658 ACCCGTTTTGGCCCAACG 61.221 61.111 23.94 23.94 45.35 4.10
2580 8827 2.642700 CGTTTTGGCCCAACGGAG 59.357 61.111 23.41 2.60 42.68 4.63
2581 8828 2.914908 CGTTTTGGCCCAACGGAGG 61.915 63.158 23.41 2.30 42.68 4.30
2583 8830 1.110518 GTTTTGGCCCAACGGAGGAA 61.111 55.000 0.00 0.00 0.00 3.36
2584 8831 0.397254 TTTTGGCCCAACGGAGGAAA 60.397 50.000 0.00 0.00 0.00 3.13
2585 8832 1.110518 TTTGGCCCAACGGAGGAAAC 61.111 55.000 0.00 0.00 0.00 2.78
2586 8833 2.114411 GGCCCAACGGAGGAAACA 59.886 61.111 0.00 0.00 0.00 2.83
2587 8834 2.265904 GGCCCAACGGAGGAAACAC 61.266 63.158 0.00 0.00 0.00 3.32
2589 8836 1.792118 GCCCAACGGAGGAAACACAC 61.792 60.000 0.00 0.00 0.00 3.82
2591 8838 0.179029 CCAACGGAGGAAACACACCT 60.179 55.000 0.00 0.00 40.80 4.00
2592 8839 0.944386 CAACGGAGGAAACACACCTG 59.056 55.000 0.00 0.00 37.93 4.00
2593 8840 0.834612 AACGGAGGAAACACACCTGA 59.165 50.000 0.00 0.00 37.93 3.86
2594 8841 0.106149 ACGGAGGAAACACACCTGAC 59.894 55.000 0.00 0.00 37.93 3.51
2596 8843 0.602905 GGAGGAAACACACCTGACGG 60.603 60.000 0.00 0.00 37.93 4.79
2597 8844 1.227853 AGGAAACACACCTGACGGC 60.228 57.895 0.00 0.00 36.30 5.68
2599 8846 3.236618 GAAACACACCTGACGGCGC 62.237 63.158 6.90 0.00 0.00 6.53
2600 8847 4.539083 AACACACCTGACGGCGCA 62.539 61.111 10.83 5.20 0.00 6.09
2602 8849 4.969196 CACACCTGACGGCGCACT 62.969 66.667 10.83 0.00 0.00 4.40
2604 8851 4.969196 CACCTGACGGCGCACTGT 62.969 66.667 10.83 3.86 38.42 3.55
2605 8852 4.969196 ACCTGACGGCGCACTGTG 62.969 66.667 10.83 2.76 34.75 3.66
2625 8872 4.135153 CCACGTCCGGAGAGCTGG 62.135 72.222 3.06 8.99 42.30 4.85
2626 8873 4.803426 CACGTCCGGAGAGCTGGC 62.803 72.222 3.06 0.00 40.61 4.85
2628 8875 4.069232 CGTCCGGAGAGCTGGCAA 62.069 66.667 3.06 0.00 40.61 4.52
2629 8876 2.347490 GTCCGGAGAGCTGGCAAA 59.653 61.111 3.06 0.00 40.61 3.68
2630 8877 1.302511 GTCCGGAGAGCTGGCAAAA 60.303 57.895 3.06 0.00 40.61 2.44
2631 8878 0.889186 GTCCGGAGAGCTGGCAAAAA 60.889 55.000 3.06 0.00 40.61 1.94
2656 8903 8.758633 AATAAAATAGACGATGATAGGGTTCG 57.241 34.615 0.00 0.00 38.76 3.95
2657 8904 6.401047 AAAATAGACGATGATAGGGTTCGA 57.599 37.500 0.00 0.00 36.73 3.71
2658 8905 6.591750 AAATAGACGATGATAGGGTTCGAT 57.408 37.500 0.00 0.00 36.73 3.59
2659 8906 5.821516 ATAGACGATGATAGGGTTCGATC 57.178 43.478 0.00 0.00 36.73 3.69
2661 8908 3.754323 AGACGATGATAGGGTTCGATCTC 59.246 47.826 0.00 0.00 36.73 2.75
2662 8909 3.487372 ACGATGATAGGGTTCGATCTCA 58.513 45.455 0.00 0.00 36.73 3.27
2663 8910 4.082845 ACGATGATAGGGTTCGATCTCAT 58.917 43.478 0.00 0.00 36.73 2.90
2664 8911 5.254115 ACGATGATAGGGTTCGATCTCATA 58.746 41.667 0.00 0.00 36.73 2.15
2666 8913 6.030849 CGATGATAGGGTTCGATCTCATAAC 58.969 44.000 0.00 0.00 34.92 1.89
2667 8914 5.723672 TGATAGGGTTCGATCTCATAACC 57.276 43.478 0.00 0.00 41.62 2.85
2670 8917 1.499049 GGTTCGATCTCATAACCCGC 58.501 55.000 0.00 0.00 37.31 6.13
2671 8918 1.499049 GTTCGATCTCATAACCCGCC 58.501 55.000 0.00 0.00 0.00 6.13
2672 8919 1.116308 TTCGATCTCATAACCCGCCA 58.884 50.000 0.00 0.00 0.00 5.69
2673 8920 1.116308 TCGATCTCATAACCCGCCAA 58.884 50.000 0.00 0.00 0.00 4.52
2674 8921 1.202486 TCGATCTCATAACCCGCCAAC 60.202 52.381 0.00 0.00 0.00 3.77
2675 8922 1.594331 GATCTCATAACCCGCCAACC 58.406 55.000 0.00 0.00 0.00 3.77
2689 8936 4.868116 AACCGGCCACGCACAGTT 62.868 61.111 0.00 0.00 39.22 3.16
2690 8937 4.868116 ACCGGCCACGCACAGTTT 62.868 61.111 0.00 0.00 39.22 2.66
2691 8938 4.326766 CCGGCCACGCACAGTTTG 62.327 66.667 2.24 0.00 39.22 2.93
2692 8939 3.582120 CGGCCACGCACAGTTTGT 61.582 61.111 2.24 0.00 0.00 2.83
2696 8943 0.179150 GCCACGCACAGTTTGTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
2697 8944 1.544686 CCACGCACAGTTTGTTTGAC 58.455 50.000 0.00 0.00 0.00 3.18
2699 8946 2.353269 CCACGCACAGTTTGTTTGACTA 59.647 45.455 0.00 0.00 0.00 2.59
2700 8947 3.181505 CCACGCACAGTTTGTTTGACTAA 60.182 43.478 0.00 0.00 0.00 2.24
2701 8948 3.783943 CACGCACAGTTTGTTTGACTAAC 59.216 43.478 0.00 0.00 34.77 2.34
2702 8949 3.181504 ACGCACAGTTTGTTTGACTAACC 60.182 43.478 0.00 0.00 35.04 2.85
2703 8950 3.702330 GCACAGTTTGTTTGACTAACCC 58.298 45.455 0.00 0.00 35.04 4.11
2704 8951 3.129638 GCACAGTTTGTTTGACTAACCCA 59.870 43.478 0.00 0.00 35.04 4.51
2709 8956 5.049405 CAGTTTGTTTGACTAACCCAGCTAG 60.049 44.000 0.00 0.00 35.04 3.42
2710 8957 4.967084 TTGTTTGACTAACCCAGCTAGA 57.033 40.909 0.00 0.00 35.81 2.43
2711 8958 4.537135 TGTTTGACTAACCCAGCTAGAG 57.463 45.455 0.00 0.00 35.81 2.43
2712 8959 4.157246 TGTTTGACTAACCCAGCTAGAGA 58.843 43.478 0.00 0.00 35.81 3.10
2713 8960 4.777896 TGTTTGACTAACCCAGCTAGAGAT 59.222 41.667 0.00 0.00 35.81 2.75
2714 8961 5.112686 GTTTGACTAACCCAGCTAGAGATG 58.887 45.833 0.00 0.00 0.00 2.90
2715 8962 3.982516 TGACTAACCCAGCTAGAGATGT 58.017 45.455 0.00 0.00 0.00 3.06
2716 8963 3.701542 TGACTAACCCAGCTAGAGATGTG 59.298 47.826 0.00 0.00 0.00 3.21
2717 8964 3.954904 GACTAACCCAGCTAGAGATGTGA 59.045 47.826 0.00 0.00 0.00 3.58
2718 8965 3.702045 ACTAACCCAGCTAGAGATGTGAC 59.298 47.826 0.00 0.00 0.00 3.67
2719 8966 2.238084 ACCCAGCTAGAGATGTGACA 57.762 50.000 0.00 0.00 0.00 3.58
2720 8967 2.106566 ACCCAGCTAGAGATGTGACAG 58.893 52.381 0.00 0.00 0.00 3.51
2721 8968 1.411977 CCCAGCTAGAGATGTGACAGG 59.588 57.143 0.00 0.00 0.00 4.00
2722 8969 2.382882 CCAGCTAGAGATGTGACAGGA 58.617 52.381 0.00 0.00 0.00 3.86
2723 8970 2.964464 CCAGCTAGAGATGTGACAGGAT 59.036 50.000 0.00 0.00 0.00 3.24
2724 8971 3.387374 CCAGCTAGAGATGTGACAGGATT 59.613 47.826 0.00 0.00 0.00 3.01
2725 8972 4.141756 CCAGCTAGAGATGTGACAGGATTT 60.142 45.833 0.00 0.00 0.00 2.17
2726 8973 5.426504 CAGCTAGAGATGTGACAGGATTTT 58.573 41.667 0.00 0.00 0.00 1.82
2727 8974 5.879223 CAGCTAGAGATGTGACAGGATTTTT 59.121 40.000 0.00 0.00 0.00 1.94
2755 9002 4.279043 GCAACGCACGGGCCTTTT 62.279 61.111 2.82 0.00 36.38 2.27
2756 9003 2.415426 CAACGCACGGGCCTTTTT 59.585 55.556 2.82 0.00 36.38 1.94
2757 9004 1.948635 CAACGCACGGGCCTTTTTG 60.949 57.895 2.82 0.00 36.38 2.44
2758 9005 3.783478 AACGCACGGGCCTTTTTGC 62.783 57.895 2.82 5.50 36.38 3.68
2759 9006 3.977244 CGCACGGGCCTTTTTGCT 61.977 61.111 2.82 0.00 36.38 3.91
2760 9007 2.622011 CGCACGGGCCTTTTTGCTA 61.622 57.895 2.82 0.00 36.38 3.49
2761 9008 1.212751 GCACGGGCCTTTTTGCTAG 59.787 57.895 0.00 0.00 32.00 3.42
2762 9009 1.524008 GCACGGGCCTTTTTGCTAGT 61.524 55.000 0.00 0.00 32.00 2.57
2866 9114 5.975344 TCGTCAAAGTTAATATGCGGACTAG 59.025 40.000 0.00 0.00 0.00 2.57
2965 9221 9.533253 AATATGCATAATTTCAGGTTTAAGCAC 57.467 29.630 11.13 0.00 35.59 4.40
3009 9265 6.099341 GGGGCAAGTGTTATTGTCTTTATTG 58.901 40.000 0.00 0.00 35.12 1.90
3124 9380 5.181748 GCAACAATTGGTATCTCAGAGAGT 58.818 41.667 10.83 0.00 0.00 3.24
3130 9386 8.200792 ACAATTGGTATCTCAGAGAGTTGATAC 58.799 37.037 10.83 3.18 40.00 2.24
3235 9491 2.093869 GGCATGGTACCGTCTACAAAGA 60.094 50.000 2.76 0.00 0.00 2.52
3301 9557 1.815003 GGTGGTGCAGAAAGAGATTGG 59.185 52.381 0.00 0.00 0.00 3.16
3772 10037 3.460857 ACTGTTGACTCGAAAGAAGCT 57.539 42.857 0.00 0.00 41.32 3.74
4039 10307 1.373570 GTGGCCGAGGAATTTGAGAG 58.626 55.000 0.00 0.00 0.00 3.20
4261 15634 4.062293 TGTTTAAAGGTGTCACTGATCCG 58.938 43.478 2.35 0.00 0.00 4.18
4286 15659 5.543507 TGGTCTAATGGCATTGTTGTTTT 57.456 34.783 22.57 0.00 0.00 2.43
4336 15710 8.184192 CAGCGAAAGGAATATTATTTGTGAAGT 58.816 33.333 3.50 0.00 0.00 3.01
4364 15738 6.515696 GCCCATGAGGAATTAAAAGCAGTATC 60.516 42.308 0.00 0.00 38.24 2.24
4391 15765 8.564574 TGTGGATTCTTGTAGTTTGTTACATTC 58.435 33.333 0.00 0.00 33.81 2.67
4595 16230 2.731572 ACCATCAAGGCTTCAATCAGG 58.268 47.619 0.00 0.00 43.14 3.86
4605 16240 1.205655 CTTCAATCAGGTCGGAGCAGA 59.794 52.381 10.15 7.38 0.00 4.26
4619 16254 0.760567 AGCAGAGACACCACCACTCA 60.761 55.000 0.00 0.00 33.69 3.41
4625 16260 1.623811 AGACACCACCACTCATACACC 59.376 52.381 0.00 0.00 0.00 4.16
4685 16320 6.408869 CATCTTTACTTGCCCATCCAAAAAT 58.591 36.000 0.00 0.00 0.00 1.82
4688 16323 8.144862 TCTTTACTTGCCCATCCAAAAATATT 57.855 30.769 0.00 0.00 0.00 1.28
4759 16394 1.928503 GACAAGTCGTCGAACCACAAA 59.071 47.619 0.00 0.00 34.19 2.83
4806 16441 7.255695 GCATGACTCCAAAATCATAATGGATCA 60.256 37.037 0.00 0.00 42.12 2.92
4809 16444 7.614974 TGACTCCAAAATCATAATGGATCACAA 59.385 33.333 0.00 0.00 42.12 3.33
4824 16459 6.459066 TGGATCACAACAACAAAAGTGAAAA 58.541 32.000 0.00 0.00 43.38 2.29
4852 16487 7.265673 ACACTAGCACAAACTATATGAACGAT 58.734 34.615 0.00 0.00 0.00 3.73
4870 16505 4.056050 ACGATTATGCGAGGACATAAACC 58.944 43.478 1.48 0.00 43.68 3.27
4901 16536 3.079578 CAATGTCAGACACATCAAGCCT 58.920 45.455 5.05 0.00 45.77 4.58
4903 16538 1.271001 TGTCAGACACATCAAGCCTGG 60.271 52.381 0.00 0.00 0.00 4.45
4919 16554 2.037251 GCCTGGAGAGACACAAACTGTA 59.963 50.000 0.00 0.00 31.03 2.74
4999 16635 4.991056 TCTTTATTCTCGATGGCATGCTAC 59.009 41.667 18.92 8.32 0.00 3.58
5104 16740 0.516001 CATGACGGCTAGATGCATGC 59.484 55.000 11.82 11.82 45.15 4.06
5109 16745 0.952497 CGGCTAGATGCATGCGGAAT 60.952 55.000 14.09 0.05 45.15 3.01
5110 16746 0.520404 GGCTAGATGCATGCGGAATG 59.480 55.000 14.09 4.37 45.15 2.67
5111 16747 1.516161 GCTAGATGCATGCGGAATGA 58.484 50.000 14.09 0.00 42.31 2.57
5120 16756 2.279659 GCATGCGGAATGAAACGAAATG 59.720 45.455 0.00 0.00 38.72 2.32
5136 16772 2.071778 AATGTGTGGCAGTTGAACCT 57.928 45.000 0.00 0.00 0.00 3.50
5179 16815 7.484324 TCATTGATGTGTATGCAATTTGTTACG 59.516 33.333 0.00 0.00 30.37 3.18
5190 16826 4.437390 GCAATTTGTTACGTGATCCCTCAG 60.437 45.833 0.00 0.00 30.18 3.35
5201 16837 4.560716 CGTGATCCCTCAGTTTGTTACTCA 60.561 45.833 0.00 0.00 33.85 3.41
5228 16864 1.398692 TGGTGAGTCCCTTTTTGCAC 58.601 50.000 0.00 0.00 34.77 4.57
5230 16866 0.673985 GTGAGTCCCTTTTTGCACCC 59.326 55.000 0.00 0.00 0.00 4.61
5257 16893 9.736023 CTAAATTATCCCTTGTTTCTGCATAAC 57.264 33.333 5.20 5.20 0.00 1.89
5290 16926 1.996798 TGGAAATTTTACCGTGCCCA 58.003 45.000 0.00 0.00 0.00 5.36
5321 16957 5.713792 TTTTCATTGATTTCGCCAGGTTA 57.286 34.783 0.00 0.00 0.00 2.85
5342 16978 9.244292 AGGTTACCAAAGAAGAAGGATATTTTC 57.756 33.333 3.51 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 248 5.482878 ACTCCTTCCGTTCCTTAATAGAACA 59.517 40.000 15.13 0.00 43.07 3.18
249 252 5.340439 ACACTCCTTCCGTTCCTTAATAG 57.660 43.478 0.00 0.00 0.00 1.73
260 263 6.579865 AGGTACAAAATATACACTCCTTCCG 58.420 40.000 0.00 0.00 0.00 4.30
270 273 8.866956 CGGGATTTATCGAGGTACAAAATATAC 58.133 37.037 0.00 0.00 0.00 1.47
271 274 8.805175 TCGGGATTTATCGAGGTACAAAATATA 58.195 33.333 0.00 0.00 0.00 0.86
272 275 7.673180 TCGGGATTTATCGAGGTACAAAATAT 58.327 34.615 0.00 0.00 0.00 1.28
273 276 7.053316 TCGGGATTTATCGAGGTACAAAATA 57.947 36.000 0.00 0.00 0.00 1.40
274 277 5.920903 TCGGGATTTATCGAGGTACAAAAT 58.079 37.500 0.00 0.00 0.00 1.82
275 278 5.341872 TCGGGATTTATCGAGGTACAAAA 57.658 39.130 0.00 0.00 0.00 2.44
276 279 5.341872 TTCGGGATTTATCGAGGTACAAA 57.658 39.130 0.00 0.00 36.72 2.83
277 280 5.105228 AGTTTCGGGATTTATCGAGGTACAA 60.105 40.000 0.00 0.00 36.72 2.41
278 281 4.403432 AGTTTCGGGATTTATCGAGGTACA 59.597 41.667 0.00 0.00 36.72 2.90
279 282 4.941657 AGTTTCGGGATTTATCGAGGTAC 58.058 43.478 0.00 0.00 36.72 3.34
280 283 5.594926 GAAGTTTCGGGATTTATCGAGGTA 58.405 41.667 0.00 0.00 36.72 3.08
281 284 4.439968 GAAGTTTCGGGATTTATCGAGGT 58.560 43.478 0.00 0.00 36.72 3.85
282 285 3.489785 CGAAGTTTCGGGATTTATCGAGG 59.510 47.826 6.38 0.00 46.30 4.63
283 286 4.694012 CGAAGTTTCGGGATTTATCGAG 57.306 45.455 6.38 0.00 46.30 4.04
296 299 6.378582 TGACATGCTTAAAATCCGAAGTTTC 58.621 36.000 0.00 0.00 0.00 2.78
297 300 6.325919 TGACATGCTTAAAATCCGAAGTTT 57.674 33.333 0.00 0.00 0.00 2.66
298 301 5.957842 TGACATGCTTAAAATCCGAAGTT 57.042 34.783 0.00 0.00 0.00 2.66
299 302 5.066505 GGATGACATGCTTAAAATCCGAAGT 59.933 40.000 0.00 0.00 0.00 3.01
300 303 5.506317 GGGATGACATGCTTAAAATCCGAAG 60.506 44.000 6.91 0.00 35.45 3.79
301 304 4.338118 GGGATGACATGCTTAAAATCCGAA 59.662 41.667 6.91 0.00 35.45 4.30
302 305 3.882888 GGGATGACATGCTTAAAATCCGA 59.117 43.478 6.91 0.00 35.45 4.55
303 306 3.303990 CGGGATGACATGCTTAAAATCCG 60.304 47.826 6.91 0.00 35.45 4.18
304 307 3.882888 TCGGGATGACATGCTTAAAATCC 59.117 43.478 6.91 0.00 34.14 3.01
305 308 5.273944 GTTCGGGATGACATGCTTAAAATC 58.726 41.667 6.91 0.00 0.00 2.17
306 309 4.201910 CGTTCGGGATGACATGCTTAAAAT 60.202 41.667 6.91 0.00 0.00 1.82
307 310 3.126171 CGTTCGGGATGACATGCTTAAAA 59.874 43.478 6.91 0.00 0.00 1.52
308 311 2.675844 CGTTCGGGATGACATGCTTAAA 59.324 45.455 6.91 0.00 0.00 1.52
309 312 2.276201 CGTTCGGGATGACATGCTTAA 58.724 47.619 6.91 0.00 0.00 1.85
310 313 1.206132 ACGTTCGGGATGACATGCTTA 59.794 47.619 6.91 0.00 0.00 3.09
311 314 0.036388 ACGTTCGGGATGACATGCTT 60.036 50.000 6.91 0.00 0.00 3.91
312 315 0.036388 AACGTTCGGGATGACATGCT 60.036 50.000 6.91 0.00 0.00 3.79
313 316 0.802494 AAACGTTCGGGATGACATGC 59.198 50.000 0.00 0.00 0.00 4.06
314 317 3.552604 AAAAACGTTCGGGATGACATG 57.447 42.857 0.00 0.00 0.00 3.21
342 345 0.759346 ACCTCGCCTCAACTGAAGTT 59.241 50.000 0.00 0.00 39.12 2.66
343 346 0.034059 CACCTCGCCTCAACTGAAGT 59.966 55.000 0.00 0.00 0.00 3.01
344 347 0.671781 CCACCTCGCCTCAACTGAAG 60.672 60.000 0.00 0.00 0.00 3.02
345 348 1.371183 CCACCTCGCCTCAACTGAA 59.629 57.895 0.00 0.00 0.00 3.02
346 349 3.059982 CCACCTCGCCTCAACTGA 58.940 61.111 0.00 0.00 0.00 3.41
347 350 2.743928 GCCACCTCGCCTCAACTG 60.744 66.667 0.00 0.00 0.00 3.16
348 351 2.818169 TTGCCACCTCGCCTCAACT 61.818 57.895 0.00 0.00 0.00 3.16
349 352 2.281484 TTGCCACCTCGCCTCAAC 60.281 61.111 0.00 0.00 0.00 3.18
350 353 2.281484 GTTGCCACCTCGCCTCAA 60.281 61.111 0.00 0.00 0.00 3.02
351 354 2.731691 GAAGTTGCCACCTCGCCTCA 62.732 60.000 0.00 0.00 0.00 3.86
352 355 2.032681 AAGTTGCCACCTCGCCTC 59.967 61.111 0.00 0.00 0.00 4.70
353 356 2.032681 GAAGTTGCCACCTCGCCT 59.967 61.111 0.00 0.00 0.00 5.52
354 357 2.281484 TGAAGTTGCCACCTCGCC 60.281 61.111 0.00 0.00 0.00 5.54
355 358 1.166531 AACTGAAGTTGCCACCTCGC 61.167 55.000 0.00 0.00 36.80 5.03
356 359 3.006672 AACTGAAGTTGCCACCTCG 57.993 52.632 0.00 0.00 36.80 4.63
365 368 5.971763 TGCCATGTTTTAACAACTGAAGTT 58.028 33.333 0.00 0.00 43.03 2.66
366 369 5.590530 TGCCATGTTTTAACAACTGAAGT 57.409 34.783 0.00 0.00 43.03 3.01
367 370 6.042143 AGTTGCCATGTTTTAACAACTGAAG 58.958 36.000 5.94 0.00 46.70 3.02
368 371 5.971763 AGTTGCCATGTTTTAACAACTGAA 58.028 33.333 5.94 0.00 46.70 3.02
369 372 5.590530 AGTTGCCATGTTTTAACAACTGA 57.409 34.783 5.94 0.00 46.70 3.41
372 375 6.415798 ACAAAGTTGCCATGTTTTAACAAC 57.584 33.333 0.00 0.00 43.03 3.32
373 376 5.289675 CGACAAAGTTGCCATGTTTTAACAA 59.710 36.000 0.00 0.00 43.03 2.83
374 377 4.800993 CGACAAAGTTGCCATGTTTTAACA 59.199 37.500 0.00 0.00 44.06 2.41
375 378 4.317769 GCGACAAAGTTGCCATGTTTTAAC 60.318 41.667 0.00 0.00 36.99 2.01
376 379 3.799420 GCGACAAAGTTGCCATGTTTTAA 59.201 39.130 0.00 0.00 36.99 1.52
377 380 3.181486 TGCGACAAAGTTGCCATGTTTTA 60.181 39.130 6.90 0.00 41.86 1.52
378 381 2.200899 GCGACAAAGTTGCCATGTTTT 58.799 42.857 0.00 0.00 36.99 2.43
379 382 1.135915 TGCGACAAAGTTGCCATGTTT 59.864 42.857 6.90 0.00 41.86 2.83
380 383 0.743688 TGCGACAAAGTTGCCATGTT 59.256 45.000 6.90 0.00 41.86 2.71
381 384 0.311790 CTGCGACAAAGTTGCCATGT 59.688 50.000 6.90 0.00 41.86 3.21
382 385 0.311790 ACTGCGACAAAGTTGCCATG 59.688 50.000 6.90 0.00 41.86 3.66
383 386 1.032014 AACTGCGACAAAGTTGCCAT 58.968 45.000 6.90 0.00 41.86 4.40
384 387 0.814457 AAACTGCGACAAAGTTGCCA 59.186 45.000 6.90 0.00 41.86 4.92
385 388 2.766970 TAAACTGCGACAAAGTTGCC 57.233 45.000 6.90 0.00 41.86 4.52
386 389 5.635549 AAAATAAACTGCGACAAAGTTGC 57.364 34.783 2.45 2.45 42.77 4.17
408 411 7.025963 GCAAACATGACAATTTTTGGACAAAA 58.974 30.769 0.00 6.14 35.09 2.44
409 412 6.404074 GGCAAACATGACAATTTTTGGACAAA 60.404 34.615 0.00 0.00 35.09 2.83
410 413 5.065731 GGCAAACATGACAATTTTTGGACAA 59.934 36.000 0.00 0.00 35.09 3.18
411 414 4.574013 GGCAAACATGACAATTTTTGGACA 59.426 37.500 0.00 0.00 35.09 4.02
412 415 4.574013 TGGCAAACATGACAATTTTTGGAC 59.426 37.500 0.00 0.00 35.09 4.02
413 416 4.774124 TGGCAAACATGACAATTTTTGGA 58.226 34.783 0.00 0.00 35.09 3.53
414 417 5.272397 GTTGGCAAACATGACAATTTTTGG 58.728 37.500 0.00 0.00 39.24 3.28
415 418 5.272397 GGTTGGCAAACATGACAATTTTTG 58.728 37.500 11.10 0.00 39.24 2.44
416 419 4.337836 GGGTTGGCAAACATGACAATTTTT 59.662 37.500 18.36 0.00 39.24 1.94
417 420 3.882288 GGGTTGGCAAACATGACAATTTT 59.118 39.130 18.36 0.00 39.24 1.82
418 421 3.475575 GGGTTGGCAAACATGACAATTT 58.524 40.909 18.36 0.00 39.24 1.82
419 422 2.224499 GGGGTTGGCAAACATGACAATT 60.224 45.455 18.36 0.00 39.24 2.32
420 423 1.347378 GGGGTTGGCAAACATGACAAT 59.653 47.619 18.36 0.00 39.24 2.71
421 424 0.755686 GGGGTTGGCAAACATGACAA 59.244 50.000 18.36 0.00 38.10 3.18
422 425 1.459455 CGGGGTTGGCAAACATGACA 61.459 55.000 18.36 0.00 38.10 3.58
423 426 1.288752 CGGGGTTGGCAAACATGAC 59.711 57.895 18.36 3.12 38.10 3.06
424 427 2.569354 GCGGGGTTGGCAAACATGA 61.569 57.895 18.36 0.00 38.10 3.07
425 428 2.048316 GCGGGGTTGGCAAACATG 60.048 61.111 18.36 9.58 38.10 3.21
426 429 3.679738 CGCGGGGTTGGCAAACAT 61.680 61.111 18.36 0.00 38.10 2.71
428 431 4.639171 CACGCGGGGTTGGCAAAC 62.639 66.667 12.47 6.75 35.40 2.93
429 432 4.877619 TCACGCGGGGTTGGCAAA 62.878 61.111 9.32 0.00 0.00 3.68
430 433 4.877619 TTCACGCGGGGTTGGCAA 62.878 61.111 9.32 0.00 0.00 4.52
432 435 3.887335 TAGTTCACGCGGGGTTGGC 62.887 63.158 9.32 0.00 0.00 4.52
433 436 0.885596 TTTAGTTCACGCGGGGTTGG 60.886 55.000 9.32 0.00 0.00 3.77
434 437 0.515564 CTTTAGTTCACGCGGGGTTG 59.484 55.000 9.32 0.00 0.00 3.77
435 438 0.107268 ACTTTAGTTCACGCGGGGTT 59.893 50.000 9.32 0.00 0.00 4.11
436 439 0.107268 AACTTTAGTTCACGCGGGGT 59.893 50.000 9.32 0.00 31.64 4.95
437 440 1.728425 GTAACTTTAGTTCACGCGGGG 59.272 52.381 9.32 0.00 39.31 5.73
438 441 1.728425 GGTAACTTTAGTTCACGCGGG 59.272 52.381 12.47 6.51 39.31 6.13
439 442 2.406130 TGGTAACTTTAGTTCACGCGG 58.594 47.619 12.47 0.00 39.31 6.46
440 443 3.676172 TCATGGTAACTTTAGTTCACGCG 59.324 43.478 3.53 3.53 39.31 6.01
441 444 5.600908 TTCATGGTAACTTTAGTTCACGC 57.399 39.130 0.00 0.00 39.31 5.34
442 445 7.111041 CGTTTTTCATGGTAACTTTAGTTCACG 59.889 37.037 0.00 0.00 39.31 4.35
443 446 7.911727 ACGTTTTTCATGGTAACTTTAGTTCAC 59.088 33.333 0.00 0.00 39.31 3.18
444 447 7.987649 ACGTTTTTCATGGTAACTTTAGTTCA 58.012 30.769 0.00 0.00 39.31 3.18
445 448 8.845942 AACGTTTTTCATGGTAACTTTAGTTC 57.154 30.769 0.00 0.00 39.31 3.01
446 449 7.641020 CGAACGTTTTTCATGGTAACTTTAGTT 59.359 33.333 0.46 0.29 41.73 2.24
447 450 7.127686 CGAACGTTTTTCATGGTAACTTTAGT 58.872 34.615 0.46 0.00 37.61 2.24
448 451 6.575942 CCGAACGTTTTTCATGGTAACTTTAG 59.424 38.462 0.46 0.00 37.61 1.85
449 452 6.259608 TCCGAACGTTTTTCATGGTAACTTTA 59.740 34.615 0.46 0.00 37.61 1.85
450 453 5.066246 TCCGAACGTTTTTCATGGTAACTTT 59.934 36.000 0.46 0.00 37.61 2.66
451 454 4.575645 TCCGAACGTTTTTCATGGTAACTT 59.424 37.500 0.46 0.00 37.61 2.66
452 455 4.128643 TCCGAACGTTTTTCATGGTAACT 58.871 39.130 0.46 0.00 37.61 2.24
453 456 4.471157 TCCGAACGTTTTTCATGGTAAC 57.529 40.909 0.46 0.00 0.00 2.50
454 457 5.453648 CAATCCGAACGTTTTTCATGGTAA 58.546 37.500 0.46 0.00 0.00 2.85
455 458 4.614078 GCAATCCGAACGTTTTTCATGGTA 60.614 41.667 0.46 0.00 0.00 3.25
456 459 3.855524 GCAATCCGAACGTTTTTCATGGT 60.856 43.478 0.46 0.00 0.00 3.55
457 460 2.661195 GCAATCCGAACGTTTTTCATGG 59.339 45.455 0.46 0.00 0.00 3.66
458 461 2.661195 GGCAATCCGAACGTTTTTCATG 59.339 45.455 0.46 1.11 0.00 3.07
459 462 2.294791 TGGCAATCCGAACGTTTTTCAT 59.705 40.909 0.46 0.00 34.14 2.57
460 463 1.676529 TGGCAATCCGAACGTTTTTCA 59.323 42.857 0.46 0.00 34.14 2.69
461 464 2.409152 TGGCAATCCGAACGTTTTTC 57.591 45.000 0.46 0.00 34.14 2.29
462 465 2.671596 CATGGCAATCCGAACGTTTTT 58.328 42.857 0.46 0.00 34.14 1.94
463 466 1.668628 GCATGGCAATCCGAACGTTTT 60.669 47.619 0.46 0.00 34.14 2.43
464 467 0.109319 GCATGGCAATCCGAACGTTT 60.109 50.000 0.46 0.00 34.14 3.60
465 468 0.960364 AGCATGGCAATCCGAACGTT 60.960 50.000 0.00 0.00 34.14 3.99
466 469 0.960364 AAGCATGGCAATCCGAACGT 60.960 50.000 0.00 0.00 34.14 3.99
467 470 1.013596 TAAGCATGGCAATCCGAACG 58.986 50.000 0.00 0.00 34.14 3.95
468 471 3.502191 TTTAAGCATGGCAATCCGAAC 57.498 42.857 0.00 0.00 34.14 3.95
469 472 4.402155 AGAATTTAAGCATGGCAATCCGAA 59.598 37.500 0.00 0.00 34.14 4.30
470 473 3.953612 AGAATTTAAGCATGGCAATCCGA 59.046 39.130 0.00 0.00 34.14 4.55
471 474 4.046462 CAGAATTTAAGCATGGCAATCCG 58.954 43.478 0.00 0.00 34.14 4.18
472 475 5.266733 TCAGAATTTAAGCATGGCAATCC 57.733 39.130 0.00 0.00 0.00 3.01
473 476 5.230726 CGTTCAGAATTTAAGCATGGCAATC 59.769 40.000 0.00 0.00 0.00 2.67
474 477 5.104374 CGTTCAGAATTTAAGCATGGCAAT 58.896 37.500 0.00 0.00 0.00 3.56
475 478 4.022416 ACGTTCAGAATTTAAGCATGGCAA 60.022 37.500 0.00 0.00 0.00 4.52
476 479 3.505680 ACGTTCAGAATTTAAGCATGGCA 59.494 39.130 0.00 0.00 0.00 4.92
477 480 4.096732 ACGTTCAGAATTTAAGCATGGC 57.903 40.909 0.00 0.00 0.00 4.40
478 481 4.788100 CGAACGTTCAGAATTTAAGCATGG 59.212 41.667 26.71 2.01 0.00 3.66
479 482 4.788100 CCGAACGTTCAGAATTTAAGCATG 59.212 41.667 26.71 6.15 0.00 4.06
480 483 4.142687 CCCGAACGTTCAGAATTTAAGCAT 60.143 41.667 26.71 0.00 0.00 3.79
481 484 3.187637 CCCGAACGTTCAGAATTTAAGCA 59.812 43.478 26.71 0.00 0.00 3.91
482 485 3.434299 TCCCGAACGTTCAGAATTTAAGC 59.566 43.478 26.71 0.00 0.00 3.09
483 486 5.796350 ATCCCGAACGTTCAGAATTTAAG 57.204 39.130 26.71 7.94 0.00 1.85
484 487 6.563222 AAATCCCGAACGTTCAGAATTTAA 57.437 33.333 26.71 4.62 0.00 1.52
485 488 7.852971 ATAAATCCCGAACGTTCAGAATTTA 57.147 32.000 26.71 25.78 0.00 1.40
486 489 6.753107 ATAAATCCCGAACGTTCAGAATTT 57.247 33.333 26.71 24.78 0.00 1.82
487 490 6.753107 AATAAATCCCGAACGTTCAGAATT 57.247 33.333 26.71 21.47 0.00 2.17
488 491 8.446599 AATAATAAATCCCGAACGTTCAGAAT 57.553 30.769 26.71 13.51 0.00 2.40
489 492 7.852971 AATAATAAATCCCGAACGTTCAGAA 57.147 32.000 26.71 11.90 0.00 3.02
490 493 7.852971 AAATAATAAATCCCGAACGTTCAGA 57.147 32.000 26.71 21.77 0.00 3.27
491 494 7.372396 CGAAAATAATAAATCCCGAACGTTCAG 59.628 37.037 26.71 16.41 0.00 3.02
492 495 7.148440 ACGAAAATAATAAATCCCGAACGTTCA 60.148 33.333 26.71 9.14 0.00 3.18
493 496 7.182089 ACGAAAATAATAAATCCCGAACGTTC 58.818 34.615 18.47 18.47 0.00 3.95
494 497 7.075674 ACGAAAATAATAAATCCCGAACGTT 57.924 32.000 0.00 0.00 0.00 3.99
495 498 6.667007 ACGAAAATAATAAATCCCGAACGT 57.333 33.333 0.00 0.00 0.00 3.99
531 534 2.100087 TGTCGTGCAAGTGACAGACTTA 59.900 45.455 12.22 0.00 43.52 2.24
532 535 1.134818 TGTCGTGCAAGTGACAGACTT 60.135 47.619 12.22 0.00 46.52 3.01
539 542 1.872952 CCTTTCATGTCGTGCAAGTGA 59.127 47.619 0.00 0.00 30.27 3.41
548 551 1.540363 CCCGGATACCCTTTCATGTCG 60.540 57.143 0.73 0.00 0.00 4.35
556 559 3.094498 GCACCCCCGGATACCCTT 61.094 66.667 0.73 0.00 0.00 3.95
557 560 3.653122 AAGCACCCCCGGATACCCT 62.653 63.158 0.73 0.00 0.00 4.34
558 561 3.094498 AAGCACCCCCGGATACCC 61.094 66.667 0.73 0.00 0.00 3.69
559 562 1.917336 TTGAAGCACCCCCGGATACC 61.917 60.000 0.73 0.00 0.00 2.73
560 563 0.746923 GTTGAAGCACCCCCGGATAC 60.747 60.000 0.73 0.00 0.00 2.24
561 564 0.912487 AGTTGAAGCACCCCCGGATA 60.912 55.000 0.73 0.00 0.00 2.59
562 565 2.198304 GAGTTGAAGCACCCCCGGAT 62.198 60.000 0.73 0.00 0.00 4.18
563 566 2.852075 AGTTGAAGCACCCCCGGA 60.852 61.111 0.73 0.00 0.00 5.14
564 567 2.359975 GAGTTGAAGCACCCCCGG 60.360 66.667 0.00 0.00 0.00 5.73
565 568 2.359975 GGAGTTGAAGCACCCCCG 60.360 66.667 0.00 0.00 0.00 5.73
566 569 1.303643 CTGGAGTTGAAGCACCCCC 60.304 63.158 0.00 0.00 0.00 5.40
567 570 1.303643 CCTGGAGTTGAAGCACCCC 60.304 63.158 0.00 0.00 0.00 4.95
568 571 1.303643 CCCTGGAGTTGAAGCACCC 60.304 63.158 0.00 0.00 0.00 4.61
569 572 0.329596 ATCCCTGGAGTTGAAGCACC 59.670 55.000 0.00 0.00 0.00 5.01
584 587 6.434340 ACAAAGACTTCTCCAACATTTATCCC 59.566 38.462 0.00 0.00 0.00 3.85
585 588 7.454260 ACAAAGACTTCTCCAACATTTATCC 57.546 36.000 0.00 0.00 0.00 2.59
586 589 9.750125 AAAACAAAGACTTCTCCAACATTTATC 57.250 29.630 0.00 0.00 0.00 1.75
589 592 9.586435 CTTAAAACAAAGACTTCTCCAACATTT 57.414 29.630 0.00 0.00 0.00 2.32
606 609 4.643784 TCGGGCCTGTTAAACTTAAAACAA 59.356 37.500 12.43 0.00 35.32 2.83
642 645 6.446781 TTTAGGACAGAGGTAGTATCAACG 57.553 41.667 0.00 0.00 0.00 4.10
669 672 9.826574 ACTACACTAGTGTCAAAAATGTTCTTA 57.173 29.630 31.11 8.36 43.74 2.10
670 673 8.732746 ACTACACTAGTGTCAAAAATGTTCTT 57.267 30.769 31.11 4.99 43.74 2.52
694 697 9.498307 CCCACAATATAAGATCGTTTTTAACAC 57.502 33.333 0.00 0.00 0.00 3.32
695 698 8.679100 CCCCACAATATAAGATCGTTTTTAACA 58.321 33.333 0.00 0.00 0.00 2.41
696 699 8.895737 TCCCCACAATATAAGATCGTTTTTAAC 58.104 33.333 0.00 0.00 0.00 2.01
697 700 9.116067 CTCCCCACAATATAAGATCGTTTTTAA 57.884 33.333 0.00 0.00 0.00 1.52
698 701 8.269317 ACTCCCCACAATATAAGATCGTTTTTA 58.731 33.333 0.00 0.00 0.00 1.52
699 702 7.116736 ACTCCCCACAATATAAGATCGTTTTT 58.883 34.615 0.00 0.00 0.00 1.94
700 703 6.659824 ACTCCCCACAATATAAGATCGTTTT 58.340 36.000 0.00 0.00 0.00 2.43
701 704 6.248569 ACTCCCCACAATATAAGATCGTTT 57.751 37.500 0.00 0.00 0.00 3.60
702 705 5.888982 ACTCCCCACAATATAAGATCGTT 57.111 39.130 0.00 0.00 0.00 3.85
703 706 6.075984 ACTACTCCCCACAATATAAGATCGT 58.924 40.000 0.00 0.00 0.00 3.73
704 707 6.591750 ACTACTCCCCACAATATAAGATCG 57.408 41.667 0.00 0.00 0.00 3.69
705 708 7.661847 CCAAACTACTCCCCACAATATAAGATC 59.338 40.741 0.00 0.00 0.00 2.75
706 709 7.349859 TCCAAACTACTCCCCACAATATAAGAT 59.650 37.037 0.00 0.00 0.00 2.40
707 710 6.674861 TCCAAACTACTCCCCACAATATAAGA 59.325 38.462 0.00 0.00 0.00 2.10
708 711 6.895782 TCCAAACTACTCCCCACAATATAAG 58.104 40.000 0.00 0.00 0.00 1.73
709 712 6.894735 TCCAAACTACTCCCCACAATATAA 57.105 37.500 0.00 0.00 0.00 0.98
710 713 7.460214 AATCCAAACTACTCCCCACAATATA 57.540 36.000 0.00 0.00 0.00 0.86
711 714 5.994416 ATCCAAACTACTCCCCACAATAT 57.006 39.130 0.00 0.00 0.00 1.28
712 715 5.789574 AATCCAAACTACTCCCCACAATA 57.210 39.130 0.00 0.00 0.00 1.90
713 716 4.675063 AATCCAAACTACTCCCCACAAT 57.325 40.909 0.00 0.00 0.00 2.71
714 717 4.463050 AAATCCAAACTACTCCCCACAA 57.537 40.909 0.00 0.00 0.00 3.33
715 718 4.463050 AAAATCCAAACTACTCCCCACA 57.537 40.909 0.00 0.00 0.00 4.17
716 719 4.021456 CCAAAAATCCAAACTACTCCCCAC 60.021 45.833 0.00 0.00 0.00 4.61
717 720 4.140900 TCCAAAAATCCAAACTACTCCCCA 60.141 41.667 0.00 0.00 0.00 4.96
718 721 4.412843 TCCAAAAATCCAAACTACTCCCC 58.587 43.478 0.00 0.00 0.00 4.81
719 722 4.082190 GCTCCAAAAATCCAAACTACTCCC 60.082 45.833 0.00 0.00 0.00 4.30
720 723 4.767409 AGCTCCAAAAATCCAAACTACTCC 59.233 41.667 0.00 0.00 0.00 3.85
721 724 5.966742 AGCTCCAAAAATCCAAACTACTC 57.033 39.130 0.00 0.00 0.00 2.59
722 725 6.731292 AAAGCTCCAAAAATCCAAACTACT 57.269 33.333 0.00 0.00 0.00 2.57
723 726 7.786178 AAAAAGCTCCAAAAATCCAAACTAC 57.214 32.000 0.00 0.00 0.00 2.73
751 757 6.694447 TCGCTAATTGGGTTGTATATCTACC 58.306 40.000 0.00 0.00 40.34 3.18
752 758 8.033038 TGATCGCTAATTGGGTTGTATATCTAC 58.967 37.037 0.00 0.00 0.00 2.59
755 765 7.677276 GCATGATCGCTAATTGGGTTGTATATC 60.677 40.741 0.00 0.00 0.00 1.63
813 1151 1.891150 CATTGCAGCCACTCCTCTTTT 59.109 47.619 0.00 0.00 0.00 2.27
1099 1531 3.282157 CACTGCTGCCAACGCTGT 61.282 61.111 0.00 0.00 39.65 4.40
1380 5443 1.211969 GGCAGCGTCGACTTCTACA 59.788 57.895 14.70 0.00 0.00 2.74
1452 5529 0.928922 CGACGAGCTCGCTAGAGTTA 59.071 55.000 34.83 0.00 46.03 2.24
1608 5685 1.912417 TGTTGTATTTGGTTCCGGGG 58.088 50.000 0.00 0.00 0.00 5.73
1612 5689 2.564947 TGCCCATGTTGTATTTGGTTCC 59.435 45.455 0.00 0.00 0.00 3.62
1729 5821 1.215117 CCATCGCCCGCAACATTTT 59.785 52.632 0.00 0.00 0.00 1.82
1886 6104 2.432628 CTTCGACCGAGGTGCACC 60.433 66.667 29.22 29.22 0.00 5.01
1948 6169 5.512232 GGCAAGAGCAAATATAGCCTCTAGT 60.512 44.000 0.00 0.00 44.61 2.57
2043 6267 7.500992 TCGTTTCTGCCTATAATGAGAAAGAT 58.499 34.615 0.00 0.00 35.61 2.40
2079 8103 9.664332 AGGATTATTATCGATCAAGGAAGAATG 57.336 33.333 0.00 0.00 0.00 2.67
2100 8154 0.687354 AGCCGACACTTGTGAGGATT 59.313 50.000 18.23 7.47 0.00 3.01
2101 8155 0.036952 CAGCCGACACTTGTGAGGAT 60.037 55.000 18.23 12.21 0.00 3.24
2102 8156 1.367471 CAGCCGACACTTGTGAGGA 59.633 57.895 18.23 0.00 0.00 3.71
2106 8160 0.391661 ATAGCCAGCCGACACTTGTG 60.392 55.000 0.00 0.00 0.00 3.33
2115 8169 4.590850 TCTGCATATATATAGCCAGCCG 57.409 45.455 13.64 6.18 0.00 5.52
2123 8177 9.899226 GCACTCGTTGATATCTGCATATATATA 57.101 33.333 4.69 0.00 0.00 0.86
2126 8180 5.745769 CGCACTCGTTGATATCTGCATATAT 59.254 40.000 4.37 4.37 0.00 0.86
2133 8187 3.071786 AGTCGCACTCGTTGATATCTG 57.928 47.619 3.98 0.00 36.96 2.90
2179 8233 1.231221 GTGTGTTGGTACATTCGCCA 58.769 50.000 0.00 0.00 39.30 5.69
2331 8385 7.556635 AGCTAATATGTGGAGTAAAGGAAAACC 59.443 37.037 0.00 0.00 0.00 3.27
2455 8625 9.771140 CACCTCCCTTTAATAGTAGGTATAGAT 57.229 37.037 0.00 0.00 36.63 1.98
2456 8626 8.963277 TCACCTCCCTTTAATAGTAGGTATAGA 58.037 37.037 0.00 0.00 36.63 1.98
2462 8632 9.327731 AGAATATCACCTCCCTTTAATAGTAGG 57.672 37.037 0.00 0.00 33.41 3.18
2465 8635 8.440771 CCAAGAATATCACCTCCCTTTAATAGT 58.559 37.037 0.00 0.00 0.00 2.12
2466 8636 8.440771 ACCAAGAATATCACCTCCCTTTAATAG 58.559 37.037 0.00 0.00 0.00 1.73
2467 8637 8.344939 ACCAAGAATATCACCTCCCTTTAATA 57.655 34.615 0.00 0.00 0.00 0.98
2468 8638 7.226059 ACCAAGAATATCACCTCCCTTTAAT 57.774 36.000 0.00 0.00 0.00 1.40
2470 8640 6.652205 AACCAAGAATATCACCTCCCTTTA 57.348 37.500 0.00 0.00 0.00 1.85
2471 8641 5.536497 AACCAAGAATATCACCTCCCTTT 57.464 39.130 0.00 0.00 0.00 3.11
2473 8643 4.384208 CGAAACCAAGAATATCACCTCCCT 60.384 45.833 0.00 0.00 0.00 4.20
2476 8646 4.571176 GGACGAAACCAAGAATATCACCTC 59.429 45.833 0.00 0.00 0.00 3.85
2477 8647 4.514401 GGACGAAACCAAGAATATCACCT 58.486 43.478 0.00 0.00 0.00 4.00
2478 8648 3.626217 GGGACGAAACCAAGAATATCACC 59.374 47.826 0.00 0.00 0.00 4.02
2479 8649 4.877323 GGGACGAAACCAAGAATATCAC 57.123 45.455 0.00 0.00 0.00 3.06
2497 8667 1.529713 GGGACCAAACAAAGCGGGA 60.530 57.895 0.00 0.00 0.00 5.14
2498 8668 2.914908 CGGGACCAAACAAAGCGGG 61.915 63.158 0.00 0.00 0.00 6.13
2499 8669 2.642700 CGGGACCAAACAAAGCGG 59.357 61.111 0.00 0.00 0.00 5.52
2500 8670 2.050442 GCGGGACCAAACAAAGCG 60.050 61.111 0.00 0.00 0.00 4.68
2501 8671 0.104120 AAAGCGGGACCAAACAAAGC 59.896 50.000 0.00 0.00 0.00 3.51
2502 8672 3.719173 TTAAAGCGGGACCAAACAAAG 57.281 42.857 0.00 0.00 0.00 2.77
2503 8673 4.674281 AATTAAAGCGGGACCAAACAAA 57.326 36.364 0.00 0.00 0.00 2.83
2504 8674 5.786264 TTAATTAAAGCGGGACCAAACAA 57.214 34.783 0.00 0.00 0.00 2.83
2505 8675 5.986501 ATTAATTAAAGCGGGACCAAACA 57.013 34.783 1.21 0.00 0.00 2.83
2507 8677 6.869388 GTGAAATTAATTAAAGCGGGACCAAA 59.131 34.615 1.21 0.00 0.00 3.28
2508 8678 6.015350 TGTGAAATTAATTAAAGCGGGACCAA 60.015 34.615 1.21 0.00 0.00 3.67
2509 8679 5.477291 TGTGAAATTAATTAAAGCGGGACCA 59.523 36.000 1.21 0.00 0.00 4.02
2532 8779 4.802039 AGTAACGAAACCACATAGCGTATG 59.198 41.667 0.00 4.20 41.88 2.39
2533 8780 5.002464 AGTAACGAAACCACATAGCGTAT 57.998 39.130 0.00 0.00 34.46 3.06
2534 8781 4.439305 AGTAACGAAACCACATAGCGTA 57.561 40.909 0.00 0.00 34.46 4.42
2535 8782 3.308438 AGTAACGAAACCACATAGCGT 57.692 42.857 0.00 0.00 36.68 5.07
2536 8783 3.723835 GCAAGTAACGAAACCACATAGCG 60.724 47.826 0.00 0.00 0.00 4.26
2537 8784 3.425758 GGCAAGTAACGAAACCACATAGC 60.426 47.826 0.00 0.00 0.00 2.97
2541 8788 1.671845 GTGGCAAGTAACGAAACCACA 59.328 47.619 5.15 0.00 45.45 4.17
2544 8791 0.594602 GGGTGGCAAGTAACGAAACC 59.405 55.000 0.00 0.00 0.00 3.27
2546 8793 0.179051 ACGGGTGGCAAGTAACGAAA 60.179 50.000 0.00 0.00 0.00 3.46
2550 8797 1.269361 CCAAAACGGGTGGCAAGTAAC 60.269 52.381 0.00 0.00 0.00 2.50
2552 8799 2.721945 CCAAAACGGGTGGCAAGTA 58.278 52.632 0.00 0.00 0.00 2.24
2553 8800 3.532501 CCAAAACGGGTGGCAAGT 58.467 55.556 0.00 0.00 0.00 3.16
2558 8805 2.840102 TTGGGCCAAAACGGGTGG 60.840 61.111 18.51 0.00 39.33 4.61
2559 8806 2.419620 GTTGGGCCAAAACGGGTG 59.580 61.111 22.82 0.00 34.06 4.61
2560 8807 3.220658 CGTTGGGCCAAAACGGGT 61.221 61.111 26.78 0.00 45.05 5.28
2564 8811 1.110518 TTCCTCCGTTGGGCCAAAAC 61.111 55.000 22.82 9.70 0.00 2.43
2565 8812 0.397254 TTTCCTCCGTTGGGCCAAAA 60.397 50.000 22.82 7.70 0.00 2.44
2566 8813 1.110518 GTTTCCTCCGTTGGGCCAAA 61.111 55.000 22.82 4.50 0.00 3.28
2570 8817 1.527380 TGTGTTTCCTCCGTTGGGC 60.527 57.895 0.00 0.00 0.00 5.36
2571 8818 1.170290 GGTGTGTTTCCTCCGTTGGG 61.170 60.000 0.00 0.00 0.00 4.12
2573 8820 0.944386 CAGGTGTGTTTCCTCCGTTG 59.056 55.000 0.00 0.00 32.37 4.10
2574 8821 0.834612 TCAGGTGTGTTTCCTCCGTT 59.165 50.000 0.00 0.00 32.37 4.44
2575 8822 0.106149 GTCAGGTGTGTTTCCTCCGT 59.894 55.000 0.00 0.00 32.37 4.69
2577 8824 0.602905 CCGTCAGGTGTGTTTCCTCC 60.603 60.000 0.00 0.00 32.37 4.30
2578 8825 1.228657 GCCGTCAGGTGTGTTTCCTC 61.229 60.000 0.00 0.00 40.50 3.71
2579 8826 1.227853 GCCGTCAGGTGTGTTTCCT 60.228 57.895 0.00 0.00 40.50 3.36
2580 8827 2.604174 CGCCGTCAGGTGTGTTTCC 61.604 63.158 0.00 0.00 42.91 3.13
2581 8828 2.935955 CGCCGTCAGGTGTGTTTC 59.064 61.111 0.00 0.00 42.91 2.78
2608 8855 4.135153 CCAGCTCTCCGGACGTGG 62.135 72.222 0.00 0.56 0.00 4.94
2612 8859 0.889186 TTTTTGCCAGCTCTCCGGAC 60.889 55.000 0.00 0.00 0.00 4.79
2613 8860 1.454104 TTTTTGCCAGCTCTCCGGA 59.546 52.632 2.93 2.93 0.00 5.14
2630 8877 9.204570 CGAACCCTATCATCGTCTATTTTATTT 57.795 33.333 0.00 0.00 0.00 1.40
2631 8878 8.582437 TCGAACCCTATCATCGTCTATTTTATT 58.418 33.333 0.00 0.00 37.79 1.40
2633 8880 7.514784 TCGAACCCTATCATCGTCTATTTTA 57.485 36.000 0.00 0.00 37.79 1.52
2634 8881 6.401047 TCGAACCCTATCATCGTCTATTTT 57.599 37.500 0.00 0.00 37.79 1.82
2635 8882 6.434652 AGATCGAACCCTATCATCGTCTATTT 59.565 38.462 0.00 0.00 37.79 1.40
2636 8883 5.946972 AGATCGAACCCTATCATCGTCTATT 59.053 40.000 0.00 0.00 37.79 1.73
2638 8885 4.907809 AGATCGAACCCTATCATCGTCTA 58.092 43.478 0.00 0.00 37.79 2.59
2639 8886 3.754323 GAGATCGAACCCTATCATCGTCT 59.246 47.826 0.00 0.00 37.79 4.18
2640 8887 3.502595 TGAGATCGAACCCTATCATCGTC 59.497 47.826 0.00 0.00 37.79 4.20
2641 8888 3.487372 TGAGATCGAACCCTATCATCGT 58.513 45.455 0.00 0.00 37.79 3.73
2642 8889 4.710423 ATGAGATCGAACCCTATCATCG 57.290 45.455 0.00 0.00 37.90 3.84
2643 8890 6.334202 GGTTATGAGATCGAACCCTATCATC 58.666 44.000 9.47 0.00 37.28 2.92
2651 8898 1.499049 GCGGGTTATGAGATCGAACC 58.501 55.000 11.32 11.32 41.66 3.62
2653 8900 1.116308 TGGCGGGTTATGAGATCGAA 58.884 50.000 0.00 0.00 0.00 3.71
2655 8902 1.217882 GTTGGCGGGTTATGAGATCG 58.782 55.000 0.00 0.00 0.00 3.69
2656 8903 1.594331 GGTTGGCGGGTTATGAGATC 58.406 55.000 0.00 0.00 0.00 2.75
2657 8904 0.179056 CGGTTGGCGGGTTATGAGAT 60.179 55.000 0.00 0.00 0.00 2.75
2658 8905 1.219664 CGGTTGGCGGGTTATGAGA 59.780 57.895 0.00 0.00 0.00 3.27
2659 8906 1.817941 CCGGTTGGCGGGTTATGAG 60.818 63.158 0.00 0.00 0.00 2.90
2672 8919 4.868116 AACTGTGCGTGGCCGGTT 62.868 61.111 1.90 0.00 33.68 4.44
2673 8920 4.868116 AAACTGTGCGTGGCCGGT 62.868 61.111 1.90 0.00 33.68 5.28
2674 8921 4.326766 CAAACTGTGCGTGGCCGG 62.327 66.667 0.00 0.00 33.68 6.13
2675 8922 2.606155 AAACAAACTGTGCGTGGCCG 62.606 55.000 0.00 0.00 37.07 6.13
2677 8924 0.179150 TCAAACAAACTGTGCGTGGC 60.179 50.000 0.00 0.00 0.00 5.01
2678 8925 1.132262 AGTCAAACAAACTGTGCGTGG 59.868 47.619 0.00 0.00 0.00 4.94
2679 8926 2.542766 AGTCAAACAAACTGTGCGTG 57.457 45.000 0.00 0.00 0.00 5.34
2680 8927 3.181504 GGTTAGTCAAACAAACTGTGCGT 60.182 43.478 0.00 0.00 40.08 5.24
2681 8928 3.359654 GGTTAGTCAAACAAACTGTGCG 58.640 45.455 0.00 0.00 40.08 5.34
2682 8929 3.129638 TGGGTTAGTCAAACAAACTGTGC 59.870 43.478 0.00 0.00 40.08 4.57
2683 8930 4.733523 GCTGGGTTAGTCAAACAAACTGTG 60.734 45.833 0.00 0.00 40.08 3.66
2684 8931 3.380320 GCTGGGTTAGTCAAACAAACTGT 59.620 43.478 0.00 0.00 40.08 3.55
2686 8933 3.898482 AGCTGGGTTAGTCAAACAAACT 58.102 40.909 0.00 0.00 40.08 2.66
2687 8934 5.061179 TCTAGCTGGGTTAGTCAAACAAAC 58.939 41.667 0.00 0.00 40.08 2.93
2688 8935 5.071250 TCTCTAGCTGGGTTAGTCAAACAAA 59.929 40.000 0.00 0.00 40.08 2.83
2689 8936 4.591498 TCTCTAGCTGGGTTAGTCAAACAA 59.409 41.667 0.00 0.00 40.08 2.83
2690 8937 4.157246 TCTCTAGCTGGGTTAGTCAAACA 58.843 43.478 0.00 0.00 40.08 2.83
2691 8938 4.803098 TCTCTAGCTGGGTTAGTCAAAC 57.197 45.455 0.00 0.00 37.36 2.93
2692 8939 4.777896 ACATCTCTAGCTGGGTTAGTCAAA 59.222 41.667 0.00 0.00 0.00 2.69
2696 8943 3.702045 GTCACATCTCTAGCTGGGTTAGT 59.298 47.826 0.00 0.00 0.00 2.24
2697 8944 3.701542 TGTCACATCTCTAGCTGGGTTAG 59.298 47.826 0.00 0.00 0.00 2.34
2699 8946 2.499289 CTGTCACATCTCTAGCTGGGTT 59.501 50.000 0.00 0.00 0.00 4.11
2700 8947 2.106566 CTGTCACATCTCTAGCTGGGT 58.893 52.381 0.00 0.00 0.00 4.51
2701 8948 1.411977 CCTGTCACATCTCTAGCTGGG 59.588 57.143 0.00 0.00 0.00 4.45
2702 8949 2.382882 TCCTGTCACATCTCTAGCTGG 58.617 52.381 0.00 0.00 0.00 4.85
2703 8950 4.669206 AATCCTGTCACATCTCTAGCTG 57.331 45.455 0.00 0.00 0.00 4.24
2704 8951 5.690464 AAAATCCTGTCACATCTCTAGCT 57.310 39.130 0.00 0.00 0.00 3.32
2738 8985 3.783478 AAAAAGGCCCGTGCGTTGC 62.783 57.895 0.00 0.00 44.30 4.17
2739 8986 1.948635 CAAAAAGGCCCGTGCGTTG 60.949 57.895 0.00 0.00 44.30 4.10
2740 8987 2.415426 CAAAAAGGCCCGTGCGTT 59.585 55.556 0.00 0.00 46.85 4.84
2741 8988 4.279043 GCAAAAAGGCCCGTGCGT 62.279 61.111 0.00 0.00 38.85 5.24
2742 8989 2.527547 CTAGCAAAAAGGCCCGTGCG 62.528 60.000 0.00 0.00 41.90 5.34
2743 8990 1.212751 CTAGCAAAAAGGCCCGTGC 59.787 57.895 0.00 4.01 37.26 5.34
2744 8991 0.958822 AACTAGCAAAAAGGCCCGTG 59.041 50.000 0.00 0.00 0.00 4.94
2745 8992 1.699730 AAACTAGCAAAAAGGCCCGT 58.300 45.000 0.00 0.00 0.00 5.28
2746 8993 2.035321 TGAAAACTAGCAAAAAGGCCCG 59.965 45.455 0.00 0.00 0.00 6.13
2747 8994 3.390135 GTGAAAACTAGCAAAAAGGCCC 58.610 45.455 0.00 0.00 0.00 5.80
2748 8995 3.069586 AGGTGAAAACTAGCAAAAAGGCC 59.930 43.478 0.00 0.00 0.00 5.19
2749 8996 4.202111 TGAGGTGAAAACTAGCAAAAAGGC 60.202 41.667 0.00 0.00 0.00 4.35
2750 8997 5.514274 TGAGGTGAAAACTAGCAAAAAGG 57.486 39.130 0.00 0.00 0.00 3.11
2843 9091 5.975344 TCTAGTCCGCATATTAACTTTGACG 59.025 40.000 0.00 0.00 0.00 4.35
2866 9114 3.861689 CGTGTACTCCCTCCGTTTTTATC 59.138 47.826 0.00 0.00 0.00 1.75
2965 9221 0.541863 ACTGCCAACTCCTATTCCGG 59.458 55.000 0.00 0.00 0.00 5.14
3124 9380 9.617523 TTATGATCATTCTTTCTGCAGTATCAA 57.382 29.630 14.65 3.59 0.00 2.57
3130 9386 7.701078 CCAAACTTATGATCATTCTTTCTGCAG 59.299 37.037 14.65 7.63 0.00 4.41
3235 9491 7.546250 ACTACATGGAGATCCGATAAAATCT 57.454 36.000 13.29 0.00 39.43 2.40
3301 9557 9.331282 AGATAGCAACCTCATTAATAAACTCAC 57.669 33.333 0.00 0.00 0.00 3.51
3588 9853 1.695242 TCCAAAGTCCGCTACCTTTGA 59.305 47.619 15.98 4.67 38.61 2.69
3772 10037 5.982356 CTCCAGAGGACATGTATGAAAAGA 58.018 41.667 0.00 0.00 0.00 2.52
3981 10249 0.109532 TCCGTGGATGTTTGAAGGCA 59.890 50.000 0.00 0.00 0.00 4.75
4039 10307 0.534873 AATTATTGCAACGCCACCCC 59.465 50.000 0.00 0.00 0.00 4.95
4085 10359 8.752766 ATTGTCTTGTTGAATCATCATTGTTC 57.247 30.769 0.00 0.00 34.96 3.18
4206 10480 4.734398 AGTGCACACAAATCCTTGAAAA 57.266 36.364 21.04 0.00 36.33 2.29
4207 10481 6.403866 AATAGTGCACACAAATCCTTGAAA 57.596 33.333 21.04 0.00 36.33 2.69
4261 15634 4.881920 ACAACAATGCCATTAGACCAAAC 58.118 39.130 0.00 0.00 0.00 2.93
4312 15685 7.968405 ACACTTCACAAATAATATTCCTTTCGC 59.032 33.333 0.00 0.00 0.00 4.70
4336 15710 3.195396 GCTTTTAATTCCTCATGGGCACA 59.805 43.478 0.00 0.00 34.39 4.57
4364 15738 7.490962 TGTAACAAACTACAAGAATCCACAG 57.509 36.000 0.00 0.00 0.00 3.66
4548 16183 1.135527 CCTCGCAAATGTTGATGCCAT 59.864 47.619 0.00 0.00 39.39 4.40
4577 16212 2.353889 CGACCTGATTGAAGCCTTGATG 59.646 50.000 0.00 0.00 0.00 3.07
4595 16230 1.080434 GTGGTGTCTCTGCTCCGAC 60.080 63.158 0.00 0.00 0.00 4.79
4605 16240 1.623811 GGTGTATGAGTGGTGGTGTCT 59.376 52.381 0.00 0.00 0.00 3.41
4619 16254 3.906720 AGCCAATTCGTGTAGGTGTAT 57.093 42.857 0.00 0.00 0.00 2.29
4625 16260 3.857052 TGAAGGTAGCCAATTCGTGTAG 58.143 45.455 0.00 0.00 0.00 2.74
4662 16297 6.625532 ATTTTTGGATGGGCAAGTAAAGAT 57.374 33.333 0.00 0.00 0.00 2.40
4685 16320 2.016318 CAACGCTCATGGCTTCCAATA 58.984 47.619 0.00 0.00 36.95 1.90
4688 16323 0.674581 CTCAACGCTCATGGCTTCCA 60.675 55.000 0.00 0.00 39.13 3.53
4707 16342 1.027357 TATCCTCGTCCCAAGTACGC 58.973 55.000 0.00 0.00 40.12 4.42
4732 16367 3.383761 GTTCGACGACTTGTCCCTTTTA 58.616 45.455 0.00 0.00 45.23 1.52
4773 16408 5.076182 TGATTTTGGAGTCATGCTTTGGTA 58.924 37.500 0.00 0.00 0.00 3.25
4806 16441 6.983890 AGTGTTCTTTTCACTTTTGTTGTTGT 59.016 30.769 0.00 0.00 42.50 3.32
4809 16444 6.806739 GCTAGTGTTCTTTTCACTTTTGTTGT 59.193 34.615 3.98 0.00 42.50 3.32
4824 16459 7.275779 CGTTCATATAGTTTGTGCTAGTGTTCT 59.724 37.037 0.00 0.00 0.00 3.01
4852 16487 7.990886 AGATTTTAGGTTTATGTCCTCGCATAA 59.009 33.333 0.00 0.00 38.94 1.90
4870 16505 6.245115 TGTGTCTGACATTGCAGATTTTAG 57.755 37.500 14.37 0.00 45.75 1.85
4901 16536 3.557054 GCCATACAGTTTGTGTCTCTCCA 60.557 47.826 0.00 0.00 40.94 3.86
4903 16538 3.929610 GAGCCATACAGTTTGTGTCTCTC 59.070 47.826 0.00 0.00 40.94 3.20
4919 16554 0.462759 GGAGTGCGCTAAAGAGCCAT 60.463 55.000 9.73 0.00 46.86 4.40
4936 16572 1.404986 CCGTGGCAAAGTCTTATCGGA 60.405 52.381 1.62 0.00 39.17 4.55
5104 16740 3.233578 CCACACATTTCGTTTCATTCCG 58.766 45.455 0.00 0.00 0.00 4.30
5109 16745 2.020720 ACTGCCACACATTTCGTTTCA 58.979 42.857 0.00 0.00 0.00 2.69
5110 16746 2.774439 ACTGCCACACATTTCGTTTC 57.226 45.000 0.00 0.00 0.00 2.78
5111 16747 2.425312 TCAACTGCCACACATTTCGTTT 59.575 40.909 0.00 0.00 0.00 3.60
5120 16756 0.381801 CACAGGTTCAACTGCCACAC 59.618 55.000 0.00 0.00 42.21 3.82
5136 16772 2.024176 TGAGAGGCTAAGGTTCCACA 57.976 50.000 0.00 0.00 0.00 4.17
5179 16815 4.894784 TGAGTAACAAACTGAGGGATCAC 58.105 43.478 0.00 0.00 39.07 3.06
5201 16837 2.464582 GGGACTCACCAACTCCCTT 58.535 57.895 0.00 0.00 40.69 3.95
5211 16847 0.673985 GGGTGCAAAAAGGGACTCAC 59.326 55.000 0.00 0.00 38.49 3.51
5228 16864 5.069119 GCAGAAACAAGGGATAATTTAGGGG 59.931 44.000 0.00 0.00 0.00 4.79
5230 16866 6.773976 TGCAGAAACAAGGGATAATTTAGG 57.226 37.500 0.00 0.00 0.00 2.69
5262 16898 6.869388 GCACGGTAAAATTTCCAAAATCCTAA 59.131 34.615 0.00 0.00 0.00 2.69
5272 16908 2.887337 CATGGGCACGGTAAAATTTCC 58.113 47.619 0.00 0.00 0.00 3.13
5290 16926 4.931002 CGAAATCAATGAAAAAGGGTGCAT 59.069 37.500 0.00 0.00 0.00 3.96
5321 16957 7.470192 TCCAGAAAATATCCTTCTTCTTTGGT 58.530 34.615 0.00 0.00 30.58 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.