Multiple sequence alignment - TraesCS7D01G463500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G463500 chr7D 100.000 9959 0 0 1 9959 578714582 578724540 0.000000e+00 18391.0
1 TraesCS7D01G463500 chr7D 93.478 46 3 0 1334 1379 218115641 218115596 1.790000e-07 69.4
2 TraesCS7D01G463500 chr7B 96.628 4448 122 14 5054 9486 642478522 642482956 0.000000e+00 7358.0
3 TraesCS7D01G463500 chr7B 93.882 4364 178 43 744 5062 642473973 642478292 0.000000e+00 6497.0
4 TraesCS7D01G463500 chr7B 93.277 476 24 7 9488 9959 642482999 642483470 0.000000e+00 695.0
5 TraesCS7D01G463500 chr7B 92.774 429 19 7 73 497 642462646 642463066 2.380000e-170 610.0
6 TraesCS7D01G463500 chr7B 90.547 402 25 7 508 905 642469319 642469711 4.120000e-143 520.0
7 TraesCS7D01G463500 chr7B 83.594 256 16 12 401 641 642471199 642471443 6.060000e-52 217.0
8 TraesCS7D01G463500 chr7B 84.577 201 22 7 1824 2016 160040883 160041082 3.670000e-44 191.0
9 TraesCS7D01G463500 chr7B 90.110 91 9 0 668 758 642473868 642473958 1.760000e-22 119.0
10 TraesCS7D01G463500 chr7B 100.000 46 0 0 638 683 642473540 642473585 1.780000e-12 86.1
11 TraesCS7D01G463500 chr7B 83.908 87 14 0 10 96 380859423 380859509 6.410000e-12 84.2
12 TraesCS7D01G463500 chr4D 75.090 558 112 20 2265 2809 18398173 18398716 1.670000e-57 235.0
13 TraesCS7D01G463500 chr3B 79.339 363 53 15 1470 1823 577527061 577527410 1.670000e-57 235.0
14 TraesCS7D01G463500 chr3B 75.132 567 105 25 2250 2795 778000917 778000366 6.010000e-57 233.0
15 TraesCS7D01G463500 chr3B 82.065 184 30 3 2540 2721 560574498 560574680 4.820000e-33 154.0
16 TraesCS7D01G463500 chr2B 78.320 369 76 4 6670 7036 133849012 133848646 1.670000e-57 235.0
17 TraesCS7D01G463500 chr2B 80.788 203 31 8 2532 2728 716190577 716190377 1.730000e-32 152.0
18 TraesCS7D01G463500 chr2B 97.561 41 0 1 1336 1376 134383358 134383397 1.790000e-07 69.4
19 TraesCS7D01G463500 chr2A 77.748 373 78 5 6666 7036 82212457 82212088 3.620000e-54 224.0
20 TraesCS7D01G463500 chr2A 75.692 506 92 21 2265 2745 105681942 105681443 3.620000e-54 224.0
21 TraesCS7D01G463500 chr2A 84.390 205 21 8 1824 2019 379982357 379982155 3.670000e-44 191.0
22 TraesCS7D01G463500 chr3D 75.605 496 96 19 2265 2739 445620410 445620901 1.300000e-53 222.0
23 TraesCS7D01G463500 chr2D 77.358 371 83 1 6666 7036 82108446 82108077 1.680000e-52 219.0
24 TraesCS7D01G463500 chr2D 97.436 39 1 0 1334 1372 227201156 227201194 6.460000e-07 67.6
25 TraesCS7D01G463500 chr2D 97.436 39 1 0 1334 1372 391272983 391272945 6.460000e-07 67.6
26 TraesCS7D01G463500 chr2D 97.436 39 1 0 1334 1372 394299067 394299105 6.460000e-07 67.6
27 TraesCS7D01G463500 chr2D 93.023 43 2 1 1334 1376 448301260 448301301 3.000000e-05 62.1
28 TraesCS7D01G463500 chr6D 86.567 201 17 8 1824 2016 272400900 272400702 7.840000e-51 213.0
29 TraesCS7D01G463500 chr6D 86.207 203 19 7 1824 2018 144189452 144189251 2.820000e-50 211.0
30 TraesCS7D01G463500 chr6D 85.222 203 22 5 1824 2018 208295429 208295631 1.700000e-47 202.0
31 TraesCS7D01G463500 chr6A 75.420 476 95 16 2265 2721 20176971 20177443 2.820000e-50 211.0
32 TraesCS7D01G463500 chr5D 74.950 503 98 22 2251 2740 377173308 377173795 1.310000e-48 206.0
33 TraesCS7D01G463500 chr5D 75.058 433 88 14 2294 2716 348514570 348514148 6.140000e-42 183.0
34 TraesCS7D01G463500 chr6B 85.500 200 21 6 1824 2016 161881356 161881158 1.700000e-47 202.0
35 TraesCS7D01G463500 chr6B 75.082 305 65 10 2521 2821 585521749 585521452 2.260000e-26 132.0
36 TraesCS7D01G463500 chr6B 90.196 51 4 1 3079 3128 609921370 609921320 2.320000e-06 65.8
37 TraesCS7D01G463500 chr1B 85.427 199 22 5 1824 2015 581031983 581032181 6.100000e-47 200.0
38 TraesCS7D01G463500 chr1B 75.728 206 45 5 2318 2519 569962081 569962285 2.290000e-16 99.0
39 TraesCS7D01G463500 chr1B 83.908 87 14 0 10 96 642794430 642794344 6.410000e-12 84.2
40 TraesCS7D01G463500 chr1D 84.422 199 23 5 1824 2018 207070083 207069889 1.320000e-43 189.0
41 TraesCS7D01G463500 chr1D 100.000 29 0 0 3684 3712 145239091 145239063 5.000000e-03 54.7
42 TraesCS7D01G463500 chr5B 78.788 231 37 10 2521 2745 576228723 576228499 2.900000e-30 145.0
43 TraesCS7D01G463500 chr5A 75.497 302 59 11 2515 2809 674219168 674218875 6.280000e-27 134.0
44 TraesCS7D01G463500 chr4A 84.071 113 16 1 1464 1576 137177447 137177337 3.800000e-19 108.0
45 TraesCS7D01G463500 chr4A 87.952 83 7 3 11 91 3450329 3450248 2.960000e-15 95.3
46 TraesCS7D01G463500 chr4A 95.122 41 1 1 1336 1376 250951157 250951118 8.350000e-06 63.9
47 TraesCS7D01G463500 chr3A 84.091 88 14 0 9 96 323438532 323438619 1.780000e-12 86.1
48 TraesCS7D01G463500 chr3A 72.575 299 63 15 2519 2807 646576641 646576930 8.290000e-11 80.5
49 TraesCS7D01G463500 chr3A 100.000 28 0 0 3685 3712 667800016 667799989 1.800000e-02 52.8
50 TraesCS7D01G463500 chr7A 76.129 155 23 8 2658 2807 666516695 666516840 1.790000e-07 69.4
51 TraesCS7D01G463500 chr1A 90.385 52 3 2 3079 3129 94502885 94502935 6.460000e-07 67.6
52 TraesCS7D01G463500 chr1A 92.857 42 3 0 1331 1372 403957422 403957463 3.000000e-05 62.1
53 TraesCS7D01G463500 chr1A 100.000 29 0 0 9522 9550 483679961 483679933 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G463500 chr7D 578714582 578724540 9958 False 18391.000000 18391 100.000000 1 9959 1 chr7D.!!$F1 9958
1 TraesCS7D01G463500 chr7B 642469319 642483470 14151 False 2213.157143 7358 92.576857 401 9959 7 chr7B.!!$F4 9558
2 TraesCS7D01G463500 chr4D 18398173 18398716 543 False 235.000000 235 75.090000 2265 2809 1 chr4D.!!$F1 544
3 TraesCS7D01G463500 chr3B 778000366 778000917 551 True 233.000000 233 75.132000 2250 2795 1 chr3B.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 2130 0.037734 TCTCACCTCACCTCAGCGTA 59.962 55.0 0.00 0.0 0.00 4.42 F
636 2131 0.453793 CTCACCTCACCTCAGCGTAG 59.546 60.0 0.00 0.0 0.00 3.51 F
943 4863 0.605589 GCACTAAGCACTCCCGGTTT 60.606 55.0 0.00 0.0 44.79 3.27 F
1063 4990 0.679505 TCTGTGGGGTGACTTCTTCG 59.320 55.0 0.00 0.0 0.00 3.79 F
1822 5764 0.759959 TCACCAAAACGCCCTACTCA 59.240 50.0 0.00 0.0 0.00 3.41 F
2679 6644 0.980754 TTCCATCTTAGGGAGCCGCA 60.981 55.0 0.00 0.0 35.46 5.69 F
2834 6802 1.429148 GAAGCAAATCGTCGCCGGAT 61.429 55.0 5.05 0.0 33.95 4.18 F
3102 7076 2.488545 TCTCGAAAAGGAGAAGACCTCG 59.511 50.0 0.00 0.0 42.89 4.63 F
4827 8806 1.111277 ACTGGTTTGCTTGACCCAAC 58.889 50.0 2.08 0.0 36.30 3.77 F
5424 9640 0.250640 AGCGAGGAATGGATGATGGC 60.251 55.0 0.00 0.0 0.00 4.40 F
5479 9695 0.321346 TGCTTCAGAGTTGCGATGGA 59.679 50.0 0.00 0.0 0.00 3.41 F
6806 11025 0.610174 TGGTGAGCCAGCACTAGAAG 59.390 55.0 0.00 0.0 40.46 2.85 F
6872 11091 1.035932 TCTCGAGTTCCCCTTAGCCG 61.036 60.0 13.13 0.0 0.00 5.52 F
8207 12437 0.667184 GCAATGCCCAAGGAAACACG 60.667 55.0 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2384 6335 0.101759 CAAGATTTGCCCGGCTCATG 59.898 55.000 11.61 0.00 0.00 3.07 R
2457 6409 1.419381 TGGTGACTGCTACTGTTCCA 58.581 50.000 0.00 0.00 0.00 3.53 R
2774 6742 0.700269 ATGGAGGCATGGTGGATCCT 60.700 55.000 14.23 0.00 37.07 3.24 R
2859 6833 2.603473 CCCCACGACAGACTCCCA 60.603 66.667 0.00 0.00 0.00 4.37 R
3100 7074 0.250166 CATGATGATGCAGAGGCCGA 60.250 55.000 0.00 0.00 40.13 5.54 R
3577 7551 1.285667 TCTCCCATCCATGCATGTTGT 59.714 47.619 24.58 7.83 0.00 3.32 R
4804 8783 1.270550 GGGTCAAGCAAACCAGTGATG 59.729 52.381 0.00 0.00 38.62 3.07 R
5039 9018 3.118519 AGGTAATTAGACGCCAACCGAAT 60.119 43.478 0.00 0.00 41.02 3.34 R
6793 11012 0.036010 TGGCTTCTTCTAGTGCTGGC 60.036 55.000 0.00 0.00 0.00 4.85 R
6872 11091 0.037232 AGGGCACGTCTAACTTGCTC 60.037 55.000 8.22 4.63 43.37 4.26 R
7175 11394 5.629079 GAAAGTTCTTTCCACCACCTATG 57.371 43.478 12.61 0.00 0.00 2.23 R
8085 12315 0.396435 TCGGCTTGTGATTCTGGTGT 59.604 50.000 0.00 0.00 0.00 4.16 R
8612 12842 1.000019 ATGCCTGCTGATGGTTGCT 60.000 52.632 0.00 0.00 0.00 3.91 R
9911 14186 0.988832 AGGAATGGAGCAAACCCGTA 59.011 50.000 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.877611 TCTCCCATTTTAGTGAGTTTGTTC 57.122 37.500 0.00 0.00 0.00 3.18
26 27 4.023536 TCCCATTTTAGTGAGTTTGTTCGC 60.024 41.667 0.00 0.00 0.00 4.70
27 28 4.023193 CCCATTTTAGTGAGTTTGTTCGCT 60.023 41.667 0.00 0.00 40.74 4.93
30 31 6.373779 CATTTTAGTGAGTTTGTTCGCTCAT 58.626 36.000 0.00 0.00 42.72 2.90
33 34 4.474226 AGTGAGTTTGTTCGCTCATTTC 57.526 40.909 0.00 0.00 42.72 2.17
35 36 4.024556 AGTGAGTTTGTTCGCTCATTTCAG 60.025 41.667 0.00 0.00 42.72 3.02
36 37 3.876914 TGAGTTTGTTCGCTCATTTCAGT 59.123 39.130 0.00 0.00 36.89 3.41
37 38 4.024893 TGAGTTTGTTCGCTCATTTCAGTC 60.025 41.667 0.00 0.00 36.89 3.51
38 39 4.130118 AGTTTGTTCGCTCATTTCAGTCT 58.870 39.130 0.00 0.00 0.00 3.24
39 40 4.024556 AGTTTGTTCGCTCATTTCAGTCTG 60.025 41.667 0.00 0.00 0.00 3.51
40 41 3.111853 TGTTCGCTCATTTCAGTCTGT 57.888 42.857 0.00 0.00 0.00 3.41
41 42 4.251543 TGTTCGCTCATTTCAGTCTGTA 57.748 40.909 0.00 0.00 0.00 2.74
45 46 4.176271 TCGCTCATTTCAGTCTGTATGTG 58.824 43.478 13.61 12.67 0.00 3.21
46 47 3.308053 CGCTCATTTCAGTCTGTATGTGG 59.692 47.826 13.61 10.46 0.00 4.17
48 49 4.697352 GCTCATTTCAGTCTGTATGTGGTT 59.303 41.667 13.61 0.00 0.00 3.67
49 50 5.163814 GCTCATTTCAGTCTGTATGTGGTTC 60.164 44.000 13.61 1.82 0.00 3.62
50 51 5.863965 TCATTTCAGTCTGTATGTGGTTCA 58.136 37.500 13.61 0.00 0.00 3.18
52 53 7.619965 TCATTTCAGTCTGTATGTGGTTCATA 58.380 34.615 13.61 0.00 37.91 2.15
53 54 8.267183 TCATTTCAGTCTGTATGTGGTTCATAT 58.733 33.333 13.61 0.00 40.54 1.78
54 55 8.896744 CATTTCAGTCTGTATGTGGTTCATATT 58.103 33.333 0.00 0.00 40.54 1.28
55 56 8.492673 TTTCAGTCTGTATGTGGTTCATATTC 57.507 34.615 0.00 0.00 40.54 1.75
56 57 7.181569 TCAGTCTGTATGTGGTTCATATTCA 57.818 36.000 0.00 0.00 40.54 2.57
57 58 7.619965 TCAGTCTGTATGTGGTTCATATTCAA 58.380 34.615 0.00 0.00 40.54 2.69
58 59 8.100164 TCAGTCTGTATGTGGTTCATATTCAAA 58.900 33.333 0.00 0.00 40.54 2.69
101 102 8.530804 AATTTAGAACGGAGGTAGTACTATGT 57.469 34.615 5.75 0.00 0.00 2.29
102 103 9.632638 AATTTAGAACGGAGGTAGTACTATGTA 57.367 33.333 5.75 0.00 0.00 2.29
103 104 9.804977 ATTTAGAACGGAGGTAGTACTATGTAT 57.195 33.333 5.75 0.00 0.00 2.29
132 133 7.751047 ATTTATTAACATATATCGCGACGCT 57.249 32.000 12.93 0.00 0.00 5.07
133 134 7.571089 TTTATTAACATATATCGCGACGCTT 57.429 32.000 12.93 7.82 0.00 4.68
134 135 4.879014 TTAACATATATCGCGACGCTTG 57.121 40.909 12.93 10.24 0.00 4.01
135 136 2.699251 ACATATATCGCGACGCTTGA 57.301 45.000 12.93 9.16 0.00 3.02
136 137 2.316792 ACATATATCGCGACGCTTGAC 58.683 47.619 12.93 0.00 0.00 3.18
137 138 2.031069 ACATATATCGCGACGCTTGACT 60.031 45.455 12.93 0.00 0.00 3.41
138 139 2.311450 TATATCGCGACGCTTGACTC 57.689 50.000 12.93 0.00 0.00 3.36
139 140 0.657659 ATATCGCGACGCTTGACTCG 60.658 55.000 12.93 0.00 0.00 4.18
146 147 3.481009 ACGCTTGACTCGTCTCTTG 57.519 52.632 0.00 0.00 34.84 3.02
147 148 0.664767 ACGCTTGACTCGTCTCTTGC 60.665 55.000 0.00 0.00 34.84 4.01
148 149 1.669158 CGCTTGACTCGTCTCTTGCG 61.669 60.000 0.00 0.00 36.41 4.85
149 150 1.347817 GCTTGACTCGTCTCTTGCGG 61.348 60.000 0.00 0.00 0.00 5.69
150 151 0.241213 CTTGACTCGTCTCTTGCGGA 59.759 55.000 0.00 0.00 0.00 5.54
151 152 0.241213 TTGACTCGTCTCTTGCGGAG 59.759 55.000 0.00 0.70 43.12 4.63
166 167 4.129737 GAGCTGGACGCGGCTGTA 62.130 66.667 13.91 0.00 45.59 2.74
167 168 3.432051 GAGCTGGACGCGGCTGTAT 62.432 63.158 13.91 0.00 45.59 2.29
169 170 1.006102 GCTGGACGCGGCTGTATAT 60.006 57.895 13.91 0.00 0.00 0.86
171 172 1.732732 GCTGGACGCGGCTGTATATAG 60.733 57.143 13.91 0.21 0.00 1.31
172 173 1.810755 CTGGACGCGGCTGTATATAGA 59.189 52.381 13.91 0.00 0.00 1.98
173 174 1.538512 TGGACGCGGCTGTATATAGAC 59.461 52.381 13.91 0.00 0.00 2.59
180 181 2.222678 CGGCTGTATATAGACGTGACGT 59.777 50.000 11.70 11.70 44.06 4.34
182 183 4.433936 CGGCTGTATATAGACGTGACGTAG 60.434 50.000 16.01 2.95 44.06 3.51
183 184 4.393074 GCTGTATATAGACGTGACGTAGC 58.607 47.826 11.89 10.19 41.37 3.58
185 186 5.334435 TGTATATAGACGTGACGTAGCAC 57.666 43.478 11.89 0.00 41.37 4.40
186 187 4.810491 TGTATATAGACGTGACGTAGCACA 59.190 41.667 11.89 6.97 41.37 4.57
188 189 1.516161 TAGACGTGACGTAGCACAGT 58.484 50.000 11.89 6.44 41.37 3.55
189 190 0.040336 AGACGTGACGTAGCACAGTG 60.040 55.000 11.89 0.00 41.37 3.66
190 191 0.317603 GACGTGACGTAGCACAGTGT 60.318 55.000 11.89 0.00 41.37 3.55
191 192 0.101759 ACGTGACGTAGCACAGTGTT 59.898 50.000 9.69 0.00 38.73 3.32
192 193 0.502695 CGTGACGTAGCACAGTGTTG 59.497 55.000 1.61 0.00 38.69 3.33
193 194 1.847818 GTGACGTAGCACAGTGTTGA 58.152 50.000 1.61 0.00 38.63 3.18
194 195 2.404215 GTGACGTAGCACAGTGTTGAT 58.596 47.619 1.61 0.00 38.63 2.57
195 196 2.155732 GTGACGTAGCACAGTGTTGATG 59.844 50.000 1.61 0.00 38.63 3.07
196 197 1.126846 GACGTAGCACAGTGTTGATGC 59.873 52.381 1.61 0.00 39.74 3.91
202 203 2.334307 ACAGTGTTGATGCTGTGCC 58.666 52.632 0.00 0.00 43.45 5.01
203 204 0.179009 ACAGTGTTGATGCTGTGCCT 60.179 50.000 0.00 0.00 43.45 4.75
204 205 0.520404 CAGTGTTGATGCTGTGCCTC 59.480 55.000 0.00 0.00 0.00 4.70
206 207 1.672030 TGTTGATGCTGTGCCTCGG 60.672 57.895 0.00 0.00 0.00 4.63
220 221 2.203640 TCGGCGCATCCCTCCTAT 60.204 61.111 10.83 0.00 0.00 2.57
221 222 2.219325 CTCGGCGCATCCCTCCTATC 62.219 65.000 10.83 0.00 0.00 2.08
222 223 2.665603 GGCGCATCCCTCCTATCC 59.334 66.667 10.83 0.00 0.00 2.59
224 225 1.294780 GCGCATCCCTCCTATCCAG 59.705 63.158 0.30 0.00 0.00 3.86
225 226 1.978473 CGCATCCCTCCTATCCAGG 59.022 63.158 0.00 0.00 44.17 4.45
226 227 1.682257 GCATCCCTCCTATCCAGGC 59.318 63.158 0.00 0.00 42.30 4.85
227 228 1.846712 GCATCCCTCCTATCCAGGCC 61.847 65.000 0.00 0.00 42.30 5.19
228 229 0.178879 CATCCCTCCTATCCAGGCCT 60.179 60.000 0.00 0.00 42.30 5.19
229 230 0.178879 ATCCCTCCTATCCAGGCCTG 60.179 60.000 26.87 26.87 42.30 4.85
230 231 2.524204 CCCTCCTATCCAGGCCTGC 61.524 68.421 28.39 0.00 42.30 4.85
231 232 2.524204 CCTCCTATCCAGGCCTGCC 61.524 68.421 28.39 0.00 42.30 4.85
232 233 1.767672 CTCCTATCCAGGCCTGCCA 60.768 63.158 28.39 16.19 42.30 4.92
234 235 2.512896 CTATCCAGGCCTGCCACC 59.487 66.667 28.39 0.00 38.92 4.61
235 236 2.042762 TATCCAGGCCTGCCACCT 59.957 61.111 28.39 11.17 38.35 4.00
236 237 2.049627 CTATCCAGGCCTGCCACCTC 62.050 65.000 28.39 0.00 34.42 3.85
251 252 3.592814 CTCGCCGCATCCGTCCTA 61.593 66.667 0.00 0.00 0.00 2.94
252 253 2.910479 TCGCCGCATCCGTCCTAT 60.910 61.111 0.00 0.00 0.00 2.57
253 254 2.430921 CGCCGCATCCGTCCTATC 60.431 66.667 0.00 0.00 0.00 2.08
254 255 2.048127 GCCGCATCCGTCCTATCC 60.048 66.667 0.00 0.00 0.00 2.59
255 256 2.867855 GCCGCATCCGTCCTATCCA 61.868 63.158 0.00 0.00 0.00 3.41
257 258 1.290324 CGCATCCGTCCTATCCAGG 59.710 63.158 0.00 0.00 44.17 4.45
260 261 1.414158 CATCCGTCCTATCCAGGTGT 58.586 55.000 0.00 0.00 43.18 4.16
261 262 1.341531 CATCCGTCCTATCCAGGTGTC 59.658 57.143 0.00 0.00 43.18 3.67
262 263 0.750546 TCCGTCCTATCCAGGTGTCG 60.751 60.000 0.00 0.00 43.18 4.35
263 264 0.750546 CCGTCCTATCCAGGTGTCGA 60.751 60.000 0.00 0.00 43.18 4.20
266 267 0.333652 TCCTATCCAGGTGTCGACCA 59.666 55.000 14.12 0.00 45.98 4.02
267 268 0.460311 CCTATCCAGGTGTCGACCAC 59.540 60.000 14.12 11.03 45.98 4.16
274 275 2.663852 GTGTCGACCACCCAACGG 60.664 66.667 14.12 0.00 38.18 4.44
275 276 2.838693 TGTCGACCACCCAACGGA 60.839 61.111 14.12 0.00 0.00 4.69
278 279 1.909287 TCGACCACCCAACGGATCA 60.909 57.895 0.00 0.00 0.00 2.92
279 280 1.004320 CGACCACCCAACGGATCAA 60.004 57.895 0.00 0.00 0.00 2.57
280 281 0.604243 CGACCACCCAACGGATCAAA 60.604 55.000 0.00 0.00 0.00 2.69
282 283 2.678479 CGACCACCCAACGGATCAAATA 60.678 50.000 0.00 0.00 0.00 1.40
283 284 3.349022 GACCACCCAACGGATCAAATAA 58.651 45.455 0.00 0.00 0.00 1.40
284 285 3.759618 GACCACCCAACGGATCAAATAAA 59.240 43.478 0.00 0.00 0.00 1.40
285 286 3.508402 ACCACCCAACGGATCAAATAAAC 59.492 43.478 0.00 0.00 0.00 2.01
286 287 3.426963 CCACCCAACGGATCAAATAAACG 60.427 47.826 0.00 0.00 0.00 3.60
289 290 3.425404 CCAACGGATCAAATAAACGCAG 58.575 45.455 0.00 0.00 0.00 5.18
290 291 2.825086 ACGGATCAAATAAACGCAGC 57.175 45.000 0.00 0.00 0.00 5.25
291 292 2.080693 ACGGATCAAATAAACGCAGCA 58.919 42.857 0.00 0.00 0.00 4.41
293 294 2.095853 CGGATCAAATAAACGCAGCACT 59.904 45.455 0.00 0.00 0.00 4.40
305 306 3.612517 CAGCACTTGCACTGGTAGA 57.387 52.632 3.62 0.00 45.16 2.59
306 307 1.882912 CAGCACTTGCACTGGTAGAA 58.117 50.000 3.62 0.00 45.16 2.10
308 309 1.160137 GCACTTGCACTGGTAGAAGG 58.840 55.000 0.00 0.00 41.59 3.46
309 310 1.160137 CACTTGCACTGGTAGAAGGC 58.840 55.000 0.00 0.00 0.00 4.35
311 312 1.142870 ACTTGCACTGGTAGAAGGCAA 59.857 47.619 0.00 0.00 41.67 4.52
312 313 2.224867 ACTTGCACTGGTAGAAGGCAAT 60.225 45.455 0.00 0.00 42.79 3.56
314 315 0.453390 GCACTGGTAGAAGGCAATGC 59.547 55.000 0.00 0.00 0.00 3.56
317 318 1.210478 ACTGGTAGAAGGCAATGCGAT 59.790 47.619 0.00 0.00 0.00 4.58
320 321 1.303309 GTAGAAGGCAATGCGATGCT 58.697 50.000 12.54 0.00 45.68 3.79
321 322 1.003116 GTAGAAGGCAATGCGATGCTG 60.003 52.381 12.54 0.00 45.68 4.41
323 324 0.248377 GAAGGCAATGCGATGCTGTC 60.248 55.000 12.54 7.19 45.68 3.51
324 325 1.660560 AAGGCAATGCGATGCTGTCC 61.661 55.000 12.54 0.00 45.68 4.02
325 326 2.410469 GCAATGCGATGCTGTCCC 59.590 61.111 6.30 0.00 43.06 4.46
326 327 2.409055 GCAATGCGATGCTGTCCCA 61.409 57.895 6.30 0.00 43.06 4.37
327 328 1.731433 GCAATGCGATGCTGTCCCAT 61.731 55.000 6.30 0.00 43.06 4.00
340 341 1.143838 TCCCATCGACATTCCTGCG 59.856 57.895 0.00 0.00 0.00 5.18
341 342 2.537560 CCCATCGACATTCCTGCGC 61.538 63.158 0.00 0.00 0.00 6.09
342 343 1.815003 CCATCGACATTCCTGCGCA 60.815 57.895 10.98 10.98 0.00 6.09
344 345 2.167219 ATCGACATTCCTGCGCACG 61.167 57.895 5.66 7.05 0.00 5.34
345 346 3.853330 CGACATTCCTGCGCACGG 61.853 66.667 5.66 13.06 0.00 4.94
346 347 2.434185 GACATTCCTGCGCACGGA 60.434 61.111 20.28 20.28 0.00 4.69
348 349 3.853330 CATTCCTGCGCACGGACG 61.853 66.667 22.85 15.36 0.00 4.79
365 366 4.683334 GCCGCACGACTTTGCCAC 62.683 66.667 0.00 0.00 39.53 5.01
366 367 3.276091 CCGCACGACTTTGCCACA 61.276 61.111 0.00 0.00 39.53 4.17
367 368 2.712539 CGCACGACTTTGCCACAA 59.287 55.556 0.00 0.00 39.53 3.33
368 369 1.369209 CGCACGACTTTGCCACAAG 60.369 57.895 0.00 0.00 39.53 3.16
369 370 1.008538 GCACGACTTTGCCACAAGG 60.009 57.895 0.00 0.00 36.42 3.61
373 374 0.878523 CGACTTTGCCACAAGGACGA 60.879 55.000 8.16 0.00 36.89 4.20
375 376 0.818040 ACTTTGCCACAAGGACGACC 60.818 55.000 0.00 0.00 36.89 4.79
376 377 0.817634 CTTTGCCACAAGGACGACCA 60.818 55.000 6.71 0.00 38.94 4.02
377 378 1.098712 TTTGCCACAAGGACGACCAC 61.099 55.000 6.71 0.00 38.94 4.16
378 379 3.041940 GCCACAAGGACGACCACG 61.042 66.667 6.71 0.00 39.51 4.94
381 382 1.663702 CACAAGGACGACCACGGAC 60.664 63.158 6.71 0.00 44.46 4.79
384 385 4.648626 AGGACGACCACGGACGGA 62.649 66.667 12.32 0.00 44.46 4.69
385 386 4.112341 GGACGACCACGGACGGAG 62.112 72.222 12.32 0.00 44.46 4.63
386 387 4.112341 GACGACCACGGACGGAGG 62.112 72.222 12.32 0.20 44.46 4.30
389 390 2.993264 GACCACGGACGGAGGGAA 60.993 66.667 9.62 0.00 0.00 3.97
391 392 1.896122 GACCACGGACGGAGGGAAAT 61.896 60.000 9.62 0.00 0.00 2.17
392 393 1.449601 CCACGGACGGAGGGAAATG 60.450 63.158 0.00 0.00 0.00 2.32
394 395 2.513897 CGGACGGAGGGAAATGCC 60.514 66.667 0.00 0.00 0.00 4.40
420 1901 2.012051 GCCACCTAACACGATGGGAAG 61.012 57.143 0.00 0.00 32.49 3.46
443 1932 1.001406 GTGTGTGTGAGGAGAGGAAGG 59.999 57.143 0.00 0.00 0.00 3.46
444 1933 1.133167 TGTGTGTGAGGAGAGGAAGGA 60.133 52.381 0.00 0.00 0.00 3.36
453 1942 1.107945 GAGAGGAAGGAGAAGACGGG 58.892 60.000 0.00 0.00 0.00 5.28
457 1946 1.079057 GAAGGAGAAGACGGGGTGC 60.079 63.158 0.00 0.00 0.00 5.01
458 1947 2.523453 GAAGGAGAAGACGGGGTGCC 62.523 65.000 0.00 0.00 0.00 5.01
459 1948 4.097361 GGAGAAGACGGGGTGCCC 62.097 72.222 0.00 0.00 41.09 5.36
460 1949 3.319198 GAGAAGACGGGGTGCCCA 61.319 66.667 9.76 0.00 45.83 5.36
461 1950 2.610859 AGAAGACGGGGTGCCCAT 60.611 61.111 9.76 0.00 45.83 4.00
462 1951 2.198304 GAGAAGACGGGGTGCCCATT 62.198 60.000 9.76 0.00 45.83 3.16
463 1952 2.035626 AAGACGGGGTGCCCATTG 59.964 61.111 9.76 0.96 45.83 2.82
474 1963 4.101790 CCCATTGCCACGCGTGTC 62.102 66.667 34.81 25.85 0.00 3.67
499 1990 1.008875 TGCGAAGTGACACGAGATGC 61.009 55.000 0.00 2.52 0.00 3.91
527 2018 1.522668 TTTCGATGCCAGGACAGTTG 58.477 50.000 0.00 0.00 0.00 3.16
528 2019 0.321564 TTCGATGCCAGGACAGTTGG 60.322 55.000 0.00 0.00 38.78 3.77
529 2020 1.003355 CGATGCCAGGACAGTTGGT 60.003 57.895 0.00 0.00 38.02 3.67
530 2021 0.249120 CGATGCCAGGACAGTTGGTA 59.751 55.000 0.00 0.00 38.02 3.25
531 2022 1.740380 CGATGCCAGGACAGTTGGTAG 60.740 57.143 0.00 0.00 38.02 3.18
593 2088 2.535934 TTTTTGTCGTATCGGCATGC 57.464 45.000 9.90 9.90 42.26 4.06
594 2089 1.443802 TTTTGTCGTATCGGCATGCA 58.556 45.000 21.36 0.00 42.26 3.96
606 2101 2.967740 GCATGCAGCCAATTAGTGC 58.032 52.632 14.21 0.00 37.23 4.40
610 2105 2.699768 GCAGCCAATTAGTGCCGCA 61.700 57.895 0.00 0.00 0.00 5.69
620 2115 1.826340 TAGTGCCGCAGCCTTTCTCA 61.826 55.000 0.00 0.00 38.69 3.27
623 2118 2.348998 CCGCAGCCTTTCTCACCT 59.651 61.111 0.00 0.00 0.00 4.00
625 2120 1.004560 CGCAGCCTTTCTCACCTCA 60.005 57.895 0.00 0.00 0.00 3.86
626 2121 1.294659 CGCAGCCTTTCTCACCTCAC 61.295 60.000 0.00 0.00 0.00 3.51
628 2123 0.689623 CAGCCTTTCTCACCTCACCT 59.310 55.000 0.00 0.00 0.00 4.00
629 2124 0.980423 AGCCTTTCTCACCTCACCTC 59.020 55.000 0.00 0.00 0.00 3.85
630 2125 0.687354 GCCTTTCTCACCTCACCTCA 59.313 55.000 0.00 0.00 0.00 3.86
632 2127 1.338579 CCTTTCTCACCTCACCTCAGC 60.339 57.143 0.00 0.00 0.00 4.26
633 2128 0.318441 TTTCTCACCTCACCTCAGCG 59.682 55.000 0.00 0.00 0.00 5.18
634 2129 0.827925 TTCTCACCTCACCTCAGCGT 60.828 55.000 0.00 0.00 0.00 5.07
635 2130 0.037734 TCTCACCTCACCTCAGCGTA 59.962 55.000 0.00 0.00 0.00 4.42
636 2131 0.453793 CTCACCTCACCTCAGCGTAG 59.546 60.000 0.00 0.00 0.00 3.51
685 4576 6.227522 TCACCAATCACGTTTCTCTAAATGA 58.772 36.000 0.00 0.00 35.53 2.57
729 4620 1.899814 TCTCGTAGGCTTGTGTCCATT 59.100 47.619 0.00 0.00 0.00 3.16
730 4621 2.002586 CTCGTAGGCTTGTGTCCATTG 58.997 52.381 0.00 0.00 0.00 2.82
733 4624 1.732259 GTAGGCTTGTGTCCATTGACG 59.268 52.381 0.00 0.00 44.86 4.35
742 4633 3.063316 TGTGTCCATTGACGAATATTGCG 59.937 43.478 0.00 0.00 44.86 4.85
748 4639 1.835121 TGACGAATATTGCGACCTCG 58.165 50.000 12.27 2.50 43.27 4.63
750 4641 2.190981 GACGAATATTGCGACCTCGTT 58.809 47.619 12.27 0.00 42.39 3.85
797 4717 5.473504 GTCCCTAGTTTGCATTCTTTTCTCA 59.526 40.000 0.00 0.00 0.00 3.27
840 4760 1.839994 CAATAGAGAGGCCTTGGACCA 59.160 52.381 6.77 0.00 0.00 4.02
845 4765 1.004745 GAGAGGCCTTGGACCAAATGA 59.995 52.381 6.77 0.00 0.00 2.57
888 4808 3.863400 GCACCTATATATTTCCACGGCGT 60.863 47.826 6.77 6.77 0.00 5.68
929 4849 2.614520 GCTAGTCAGACATCGAGCACTA 59.385 50.000 2.66 0.00 33.69 2.74
943 4863 0.605589 GCACTAAGCACTCCCGGTTT 60.606 55.000 0.00 0.00 44.79 3.27
945 4865 1.002087 CACTAAGCACTCCCGGTTTCT 59.998 52.381 0.00 0.00 0.00 2.52
953 4873 2.766828 CACTCCCGGTTTCTATTCTCCT 59.233 50.000 0.00 0.00 0.00 3.69
955 4875 3.197983 ACTCCCGGTTTCTATTCTCCTTG 59.802 47.826 0.00 0.00 0.00 3.61
1056 4983 2.960688 GCCCTCTCTGTGGGGTGAC 61.961 68.421 6.80 0.00 44.71 3.67
1063 4990 0.679505 TCTGTGGGGTGACTTCTTCG 59.320 55.000 0.00 0.00 0.00 3.79
1115 5043 4.962995 ACCCGTCAATCCAGATATATAGGG 59.037 45.833 4.35 0.00 39.75 3.53
1117 5045 5.069251 CCCGTCAATCCAGATATATAGGGTC 59.931 48.000 4.35 0.00 0.00 4.46
1119 5047 7.061054 CCGTCAATCCAGATATATAGGGTCTA 58.939 42.308 4.35 0.00 0.00 2.59
1120 5048 7.560262 CCGTCAATCCAGATATATAGGGTCTAA 59.440 40.741 4.35 0.00 0.00 2.10
1160 5088 2.095919 CCCGCAAAAGAAAAGTACGGAG 60.096 50.000 0.00 0.00 41.61 4.63
1174 5102 5.349061 AGTACGGAGGAATTTATTCGGTT 57.651 39.130 0.00 0.00 37.67 4.44
1208 5136 1.766494 TGCATCCATGGACACCAATC 58.234 50.000 18.99 1.85 36.95 2.67
1224 5152 4.676471 CACCAATCTGATGAAACACGTTTG 59.324 41.667 0.00 0.00 32.11 2.93
1226 5154 4.911610 CCAATCTGATGAAACACGTTTGTC 59.088 41.667 0.00 0.00 33.55 3.18
1282 5215 2.165167 ACACGTACGGATTGGAGAGAA 58.835 47.619 21.06 0.00 0.00 2.87
1289 5222 3.624777 ACGGATTGGAGAGAATTGCATT 58.375 40.909 0.00 0.00 0.00 3.56
1290 5223 4.019174 ACGGATTGGAGAGAATTGCATTT 58.981 39.130 0.00 0.00 0.00 2.32
1291 5224 4.463891 ACGGATTGGAGAGAATTGCATTTT 59.536 37.500 0.00 0.00 0.00 1.82
1292 5225 5.047092 ACGGATTGGAGAGAATTGCATTTTT 60.047 36.000 0.00 0.00 0.00 1.94
1343 5276 2.996631 AGCAAGGACTTTAGAGCATGG 58.003 47.619 0.00 0.00 0.00 3.66
1421 5361 7.659186 AGTAATGTAGGCTATAAGGTCGAAAG 58.341 38.462 0.00 0.00 0.00 2.62
1429 5370 5.106277 GGCTATAAGGTCGAAAGCAGTTTTT 60.106 40.000 0.00 0.00 34.85 1.94
1630 5572 6.758806 TTATACTATTCCTCCCCAAAGTCC 57.241 41.667 0.00 0.00 0.00 3.85
1643 5585 4.563374 CCCCAAAGTCCATGAATTTGTTCC 60.563 45.833 13.76 0.00 43.25 3.62
1698 5640 4.523853 TCGTGAATGTTTACACACACAC 57.476 40.909 15.93 9.12 38.18 3.82
1792 5734 5.538849 TTGTTTAAAATTTTCGGCCTCCT 57.461 34.783 6.72 0.00 0.00 3.69
1822 5764 0.759959 TCACCAAAACGCCCTACTCA 59.240 50.000 0.00 0.00 0.00 3.41
1873 5815 8.841300 ACTTTTTCATACTTTCTCTTTCTCCAC 58.159 33.333 0.00 0.00 0.00 4.02
1959 5901 8.147704 CCCTTACTTTTTCATATCTCTCTCCTC 58.852 40.741 0.00 0.00 0.00 3.71
1984 5926 8.729756 TCCACATAGACAAAAATGTCATGTAAG 58.270 33.333 17.97 14.65 41.02 2.34
2064 6010 3.678072 CCCGTATAATATGTGGACTTGCG 59.322 47.826 0.00 0.00 0.00 4.85
2076 6022 1.664873 GACTTGCGGAGTTAATCCCC 58.335 55.000 0.00 0.00 46.50 4.81
2128 6074 5.304686 TCTACATATTCCATTGTCACCCC 57.695 43.478 0.00 0.00 0.00 4.95
2161 6107 1.548081 CTGGCCACATCCATGACAAA 58.452 50.000 0.00 0.00 35.22 2.83
2256 6203 6.394345 GGGGGAGGATAATTGTGATCTATT 57.606 41.667 0.00 0.00 0.00 1.73
2257 6204 6.794534 GGGGGAGGATAATTGTGATCTATTT 58.205 40.000 0.00 0.00 0.00 1.40
2258 6205 6.660949 GGGGGAGGATAATTGTGATCTATTTG 59.339 42.308 0.00 0.00 0.00 2.32
2259 6206 7.234355 GGGGAGGATAATTGTGATCTATTTGT 58.766 38.462 0.00 0.00 0.00 2.83
2260 6207 7.391833 GGGGAGGATAATTGTGATCTATTTGTC 59.608 40.741 0.00 0.00 0.00 3.18
2262 6209 9.342308 GGAGGATAATTGTGATCTATTTGTCAA 57.658 33.333 0.00 0.00 0.00 3.18
2292 6240 7.482654 TGACAGTACAAAGAATTCAGAAGTG 57.517 36.000 8.44 4.29 0.00 3.16
2336 6285 2.286872 AGACCACCTACGATGACTACG 58.713 52.381 0.00 0.00 0.00 3.51
2380 6331 4.227134 CCACTCATCGCCCCTCCG 62.227 72.222 0.00 0.00 0.00 4.63
2384 6335 3.432051 CTCATCGCCCCTCCGTCAC 62.432 68.421 0.00 0.00 0.00 3.67
2407 6358 1.079888 GCCGGGCAAATCTTGTTGG 60.080 57.895 15.62 0.00 0.00 3.77
2582 6545 1.797211 GACCGAATCCCGCGAGATCT 61.797 60.000 8.23 0.00 36.84 2.75
2679 6644 0.980754 TTCCATCTTAGGGAGCCGCA 60.981 55.000 0.00 0.00 35.46 5.69
2774 6742 5.252863 CCATCCCACCATATATAAAGGGTCA 59.747 44.000 12.69 0.00 37.56 4.02
2821 6789 2.235016 AGGCCACAAAATACGAAGCAA 58.765 42.857 5.01 0.00 0.00 3.91
2833 6801 2.047655 AAGCAAATCGTCGCCGGA 60.048 55.556 5.05 0.00 33.95 5.14
2834 6802 1.429148 GAAGCAAATCGTCGCCGGAT 61.429 55.000 5.05 0.00 33.95 4.18
2968 6942 6.583912 ATCATGGTTAACTTGATTACGACG 57.416 37.500 14.79 0.00 40.03 5.12
2970 6944 5.803461 TCATGGTTAACTTGATTACGACGAG 59.197 40.000 0.00 0.00 0.00 4.18
2999 6973 6.200114 TCATATGGGCTGATATCATCTCTCA 58.800 40.000 5.72 5.42 0.00 3.27
3102 7076 2.488545 TCTCGAAAAGGAGAAGACCTCG 59.511 50.000 0.00 0.00 42.89 4.63
3249 7223 5.429130 CATGCATGCATATCCACTCTCTAT 58.571 41.667 31.73 3.67 34.91 1.98
3268 7242 5.660864 CTCTATAAGAGGAGGATTCCCATCC 59.339 48.000 0.00 0.70 45.24 3.51
3299 7273 8.931385 ACAAATAGGATGACAAATTTGCATAC 57.069 30.769 20.98 20.98 41.06 2.39
3300 7274 8.530311 ACAAATAGGATGACAAATTTGCATACA 58.470 29.630 26.05 18.44 41.06 2.29
3301 7275 9.537192 CAAATAGGATGACAAATTTGCATACAT 57.463 29.630 26.05 21.01 33.87 2.29
3306 7280 9.797642 AGGATGACAAATTTGCATACATATAGA 57.202 29.630 26.05 3.86 31.93 1.98
3440 7414 4.433186 TTATTCAAACATGAGGCAACCG 57.567 40.909 0.00 0.00 37.17 4.44
3467 7441 4.261155 CCCGACATATGCCAACATAAACTG 60.261 45.833 1.58 0.00 41.99 3.16
3513 7487 9.074576 TCTTAATAGGCACGTATGAGATTTAGA 57.925 33.333 0.00 0.00 0.00 2.10
3577 7551 5.400066 TGTATTCATTCTGAAGGACACGA 57.600 39.130 3.98 0.00 40.05 4.35
3641 7615 4.826733 TGTCATGGCATATAATGGGTGAAC 59.173 41.667 0.00 0.00 0.00 3.18
3642 7616 4.826733 GTCATGGCATATAATGGGTGAACA 59.173 41.667 0.00 0.00 0.00 3.18
3656 7630 5.856156 TGGGTGAACAGTCGAAAGTAATAA 58.144 37.500 0.00 0.00 0.00 1.40
3715 7689 6.978080 GGCATGTACAATGGTTTATAAGTTGG 59.022 38.462 0.00 0.00 0.00 3.77
3830 7805 2.735151 AGTTTGCCTAAAGTATGGGGC 58.265 47.619 0.00 0.00 44.31 5.80
3876 7851 8.853077 ACATGTGAATAAGAAAAGACATCTCA 57.147 30.769 0.00 0.00 0.00 3.27
3969 7944 7.294473 GCAAGTATCTCTTTTGTGTTTCTCTC 58.706 38.462 0.00 0.00 33.63 3.20
3988 7963 4.416516 TCTCTCTTCCACATGACCAAGTA 58.583 43.478 0.00 0.00 0.00 2.24
4034 8009 8.502387 CATGACCTAAGAAGAAAGAAGTGAAAG 58.498 37.037 0.00 0.00 0.00 2.62
4037 8012 8.669946 ACCTAAGAAGAAAGAAGTGAAAGAAG 57.330 34.615 0.00 0.00 0.00 2.85
4104 8079 9.294030 GACTTTTTATGGTATTCTGCATGAAAG 57.706 33.333 0.00 0.00 38.29 2.62
4110 8085 3.063997 GGTATTCTGCATGAAAGGACACG 59.936 47.826 0.00 0.00 38.29 4.49
4151 8126 5.236911 CCATTGCAGTTTTTGTACTTGCAAT 59.763 36.000 15.00 15.00 44.31 3.56
4152 8127 6.238429 CCATTGCAGTTTTTGTACTTGCAATT 60.238 34.615 17.37 0.00 42.87 2.32
4153 8128 6.734104 TTGCAGTTTTTGTACTTGCAATTT 57.266 29.167 0.00 0.00 37.31 1.82
4154 8129 6.734104 TGCAGTTTTTGTACTTGCAATTTT 57.266 29.167 0.00 0.00 32.88 1.82
4155 8130 6.541086 TGCAGTTTTTGTACTTGCAATTTTG 58.459 32.000 0.00 0.00 32.88 2.44
4165 8140 7.721402 TGTACTTGCAATTTTGTTTCACCTAT 58.279 30.769 0.00 0.00 0.00 2.57
4303 8278 7.199541 CAATTCAAATGTTAAATTGGGTGCA 57.800 32.000 0.00 0.00 36.95 4.57
4304 8279 7.818642 CAATTCAAATGTTAAATTGGGTGCAT 58.181 30.769 0.00 0.00 36.95 3.96
4312 8287 3.456380 AAATTGGGTGCATGTAGACCT 57.544 42.857 9.64 0.00 32.33 3.85
4320 8295 3.197983 GGTGCATGTAGACCTAGTTTCCT 59.802 47.826 0.00 0.00 0.00 3.36
4322 8297 5.452077 GGTGCATGTAGACCTAGTTTCCTAG 60.452 48.000 0.00 0.00 40.42 3.02
4324 8299 5.955959 TGCATGTAGACCTAGTTTCCTAGAA 59.044 40.000 0.00 0.00 42.90 2.10
4325 8300 6.611642 TGCATGTAGACCTAGTTTCCTAGAAT 59.388 38.462 0.00 0.00 42.90 2.40
4326 8301 7.149307 GCATGTAGACCTAGTTTCCTAGAATC 58.851 42.308 0.00 0.00 42.90 2.52
4327 8302 6.939132 TGTAGACCTAGTTTCCTAGAATCG 57.061 41.667 0.00 0.00 42.90 3.34
4414 8389 7.068839 TGGAGGAAGAGAACACAAGATATAGTC 59.931 40.741 0.00 0.00 0.00 2.59
4496 8471 4.800023 AGATGGCATTGATGGATGAAGAA 58.200 39.130 0.00 0.00 0.00 2.52
4497 8472 4.827835 AGATGGCATTGATGGATGAAGAAG 59.172 41.667 0.00 0.00 0.00 2.85
4745 8723 3.951563 AAATAGTAGGATGGGCAAGCA 57.048 42.857 0.00 0.00 0.00 3.91
4792 8770 3.207778 TGGTTGTCGGGTTCAGTTAAAG 58.792 45.455 0.00 0.00 0.00 1.85
4800 8779 6.017440 TGTCGGGTTCAGTTAAAGAAATGAAG 60.017 38.462 1.18 0.00 46.94 3.02
4804 8783 7.306213 GGGTTCAGTTAAAGAAATGAAGTAGC 58.694 38.462 1.18 0.00 46.94 3.58
4827 8806 1.111277 ACTGGTTTGCTTGACCCAAC 58.889 50.000 2.08 0.00 36.30 3.77
4948 8927 4.410099 TGAGGTGGATTCAGCAAAAGAAT 58.590 39.130 5.87 0.00 43.32 2.40
4959 8938 9.129209 GATTCAGCAAAAGAATACAAGGTTTAC 57.871 33.333 0.00 0.00 35.93 2.01
5011 8990 7.864108 TTCTTTGTTGATTTGTCTCTCAGAA 57.136 32.000 0.00 0.00 0.00 3.02
5012 8991 7.864108 TCTTTGTTGATTTGTCTCTCAGAAA 57.136 32.000 0.00 0.00 0.00 2.52
5052 9031 4.510340 ACAAGATATTATTCGGTTGGCGTC 59.490 41.667 0.00 0.00 0.00 5.19
5082 9298 6.245408 ACCTATAGACAATGAACCTTGCAAA 58.755 36.000 0.00 0.00 0.00 3.68
5100 9316 3.243602 GCAAACATACCCGACAAACCTTT 60.244 43.478 0.00 0.00 0.00 3.11
5106 9322 5.471116 ACATACCCGACAAACCTTTTCTAAC 59.529 40.000 0.00 0.00 0.00 2.34
5107 9323 3.888583 ACCCGACAAACCTTTTCTAACA 58.111 40.909 0.00 0.00 0.00 2.41
5116 9332 8.879427 ACAAACCTTTTCTAACATAGGCTATT 57.121 30.769 3.76 0.00 0.00 1.73
5133 9349 5.066893 AGGCTATTGCTACATGTGTCAATTG 59.933 40.000 23.33 21.88 39.59 2.32
5267 9483 4.128925 TGATTGTACTGAGGAGTGCATC 57.871 45.455 0.00 0.00 43.43 3.91
5344 9560 5.810525 AGAGTGAGTTCATTCGTTGTTTTG 58.189 37.500 0.00 0.00 37.62 2.44
5381 9597 1.616159 TTTGGCCAGCTGAACCTAAC 58.384 50.000 17.39 0.00 0.00 2.34
5424 9640 0.250640 AGCGAGGAATGGATGATGGC 60.251 55.000 0.00 0.00 0.00 4.40
5462 9678 7.092716 ACTGAAAGATAAAATCCACATGTTGC 58.907 34.615 0.00 0.00 37.43 4.17
5466 9682 6.839124 AGATAAAATCCACATGTTGCTTCA 57.161 33.333 0.00 0.00 0.00 3.02
5479 9695 0.321346 TGCTTCAGAGTTGCGATGGA 59.679 50.000 0.00 0.00 0.00 3.41
5481 9697 1.005340 CTTCAGAGTTGCGATGGAGC 58.995 55.000 0.00 0.00 37.71 4.70
5487 9703 2.745884 TTGCGATGGAGCGTTGGG 60.746 61.111 0.00 0.00 40.67 4.12
5664 9880 3.071167 GGTCATTGGGTATCTCCAGGTAC 59.929 52.174 0.00 0.00 38.17 3.34
5677 9893 5.970289 TCTCCAGGTACCTCTTCATCATAT 58.030 41.667 12.84 0.00 0.00 1.78
5764 9980 6.152831 GGCTTATACTTGTTCACCTCCAAAAT 59.847 38.462 0.00 0.00 0.00 1.82
5819 10035 4.101114 TGGATACATGTAGTGGGTTGACT 58.899 43.478 11.91 0.00 46.17 3.41
5829 10045 9.261180 CATGTAGTGGGTTGACTAAGTAATATG 57.739 37.037 0.00 0.00 30.16 1.78
5946 10162 1.837439 CCCTGTCATAGCACCCTTACA 59.163 52.381 0.00 0.00 0.00 2.41
5952 10168 4.699735 TGTCATAGCACCCTTACACATTTG 59.300 41.667 0.00 0.00 0.00 2.32
5997 10213 8.028938 GCCACCATAATATTTGATATCAACCAC 58.971 37.037 17.76 0.00 35.28 4.16
6007 10223 6.509418 TTGATATCAACCACTTAAACCAGC 57.491 37.500 14.23 0.00 0.00 4.85
6065 10281 6.182039 TGTTGAAGAGATATCCAAAAAGCG 57.818 37.500 0.00 0.00 0.00 4.68
6090 10306 7.040478 CGATTCCCCATAAATATGCTTTTCTGA 60.040 37.037 0.00 0.00 32.40 3.27
6106 10322 6.614999 GCTTTTCTGAATTTGTCTCAATTGCG 60.615 38.462 0.00 0.00 0.00 4.85
6109 10325 3.809234 TGAATTTGTCTCAATTGCGTCG 58.191 40.909 0.00 0.00 0.00 5.12
6192 10408 2.602257 AGGCTGGTTTTGAAAGTTGC 57.398 45.000 0.00 0.00 0.00 4.17
6212 10428 2.412770 GCCAATTGCATTTCTTCGGTTG 59.587 45.455 0.00 0.00 40.77 3.77
6235 10451 6.455647 TGTGTAGTTCATAGTGTTCTTCCAG 58.544 40.000 0.00 0.00 0.00 3.86
6239 10455 7.819415 TGTAGTTCATAGTGTTCTTCCAGATTG 59.181 37.037 0.00 0.00 0.00 2.67
6242 10458 7.768120 AGTTCATAGTGTTCTTCCAGATTGATC 59.232 37.037 0.00 0.00 0.00 2.92
6244 10460 7.495901 TCATAGTGTTCTTCCAGATTGATCTC 58.504 38.462 0.00 0.00 34.22 2.75
6258 10474 8.824781 CCAGATTGATCTCTATTACACTTGTTG 58.175 37.037 0.00 0.00 34.22 3.33
6270 10486 2.164219 ACACTTGTTGTCTGTTGCCAAG 59.836 45.455 0.00 0.00 38.71 3.61
6282 10498 7.812648 TGTCTGTTGCCAAGTTTGTATTATAC 58.187 34.615 0.00 0.00 0.00 1.47
6464 10680 6.116126 ACCCATTTCTCAGTAGTTATCTTGC 58.884 40.000 0.00 0.00 0.00 4.01
6467 10683 6.703607 CCATTTCTCAGTAGTTATCTTGCGAT 59.296 38.462 0.00 0.00 0.00 4.58
6592 10808 6.877611 TGACTGAGGATTACAAAGGTTTTC 57.122 37.500 0.00 0.00 0.00 2.29
6601 10817 3.982576 ACAAAGGTTTTCGGCAACTAG 57.017 42.857 0.00 0.00 0.00 2.57
6707 10926 8.410030 TGTCTTCAACAAATTCAAATGTGAAG 57.590 30.769 4.31 0.00 40.06 3.02
6727 10946 1.235281 GCGGGGTCTTCAACAAGGAC 61.235 60.000 0.00 0.00 0.00 3.85
6793 11012 4.633175 CTCATCTTCTCATCCATGGTGAG 58.367 47.826 26.09 26.09 43.46 3.51
6806 11025 0.610174 TGGTGAGCCAGCACTAGAAG 59.390 55.000 0.00 0.00 40.46 2.85
6820 11039 4.094146 GCACTAGAAGAAGCCATCACTTTC 59.906 45.833 0.00 0.00 0.00 2.62
6872 11091 1.035932 TCTCGAGTTCCCCTTAGCCG 61.036 60.000 13.13 0.00 0.00 5.52
6882 11101 1.473434 CCCCTTAGCCGAGCAAGTTAG 60.473 57.143 0.00 0.00 0.00 2.34
6929 11148 6.634955 GCCAAGGACTTATAAGAGGATGGAAA 60.635 42.308 19.38 0.00 0.00 3.13
6978 11197 4.785376 AGAAGAGGAATATCACAACCCTGT 59.215 41.667 0.00 0.00 35.63 4.00
7085 11304 3.582647 TCCTTTGTAATCTCTCCACTGCA 59.417 43.478 0.00 0.00 0.00 4.41
7328 11547 5.741982 GCCAAAATAAATGTGCTACTTACCG 59.258 40.000 0.00 0.00 0.00 4.02
7413 11632 6.483687 CCGTACAAAGGTTACATTCATTAGC 58.516 40.000 0.00 0.00 0.00 3.09
7420 11639 4.412199 AGGTTACATTCATTAGCCTGGCTA 59.588 41.667 24.10 24.10 40.44 3.93
7425 11644 4.581824 ACATTCATTAGCCTGGCTATGTTG 59.418 41.667 27.82 22.97 41.01 3.33
7623 11842 3.429085 CAGGAATTTTGCATGTACGCTC 58.571 45.455 0.00 0.00 0.00 5.03
7882 12112 3.300009 GTTCTTTGATGAACTGTTGGCG 58.700 45.455 0.00 0.00 42.03 5.69
7958 12188 5.648092 GCCTACATCAAGAAACAGGTACATT 59.352 40.000 0.00 0.00 0.00 2.71
7963 12193 5.437289 TCAAGAAACAGGTACATTTGCTG 57.563 39.130 0.00 0.00 0.00 4.41
8008 12238 8.845227 ACAATTGTTTGACACATATAACTGTCA 58.155 29.630 4.92 10.40 43.99 3.58
8046 12276 2.033801 CCTTCTTTGTGTGCAGTTCCAG 59.966 50.000 0.00 0.00 0.00 3.86
8085 12315 5.677319 ATCTCCAAGAAGTCGAATGGTTA 57.323 39.130 0.00 0.00 34.50 2.85
8103 12333 2.093306 TACACCAGAATCACAAGCCG 57.907 50.000 0.00 0.00 0.00 5.52
8148 12378 3.118298 TGACCTCCATGACCATATGTGTG 60.118 47.826 1.24 0.00 0.00 3.82
8207 12437 0.667184 GCAATGCCCAAGGAAACACG 60.667 55.000 0.00 0.00 0.00 4.49
8345 12575 4.579869 TCCTAGCCATGTTTCTGAACTTC 58.420 43.478 0.00 0.00 36.70 3.01
8346 12576 4.287067 TCCTAGCCATGTTTCTGAACTTCT 59.713 41.667 0.00 0.00 36.70 2.85
8347 12577 5.006386 CCTAGCCATGTTTCTGAACTTCTT 58.994 41.667 0.00 0.00 36.70 2.52
8525 12755 2.653726 TGACTCACTGGTTTGCAACAT 58.346 42.857 0.00 0.00 0.00 2.71
8595 12825 7.653647 AGACTATTAAATTTTGGCGTGTTTGA 58.346 30.769 0.00 0.00 0.00 2.69
8612 12842 7.913297 GCGTGTTTGAAATATTTAATCCTAGCA 59.087 33.333 0.00 0.00 0.00 3.49
8621 12851 7.693969 ATATTTAATCCTAGCAGCAACCATC 57.306 36.000 0.00 0.00 0.00 3.51
8648 12878 7.633361 CAGGCATGCATGATAAATTTTACTC 57.367 36.000 30.64 7.19 0.00 2.59
8649 12879 6.643770 CAGGCATGCATGATAAATTTTACTCC 59.356 38.462 30.64 15.78 0.00 3.85
8650 12880 6.324512 AGGCATGCATGATAAATTTTACTCCA 59.675 34.615 30.64 0.00 0.00 3.86
8651 12881 7.015877 AGGCATGCATGATAAATTTTACTCCAT 59.984 33.333 30.64 1.66 0.00 3.41
8652 12882 8.306038 GGCATGCATGATAAATTTTACTCCATA 58.694 33.333 30.64 0.00 0.00 2.74
8653 12883 9.865321 GCATGCATGATAAATTTTACTCCATAT 57.135 29.630 30.64 0.00 0.00 1.78
8826 13056 2.925170 AACCGAGTGCTGCTCCCT 60.925 61.111 0.00 0.00 41.10 4.20
8937 13167 3.198853 ACAAGACTATTGAGGCCCTCTTC 59.801 47.826 12.94 0.97 0.00 2.87
9000 13230 7.516312 GCTTGTTGCCGTACTACTATTTATCAC 60.516 40.741 0.00 0.00 35.15 3.06
9294 13524 3.798511 GGGCCTACCTGCTGGGAC 61.799 72.222 14.82 0.00 38.76 4.46
9327 13557 1.404391 GATTCATGGGCAGCTTCTGTG 59.596 52.381 0.00 0.00 33.43 3.66
9339 13569 4.005650 CAGCTTCTGTGCCAAATTAGAGA 58.994 43.478 0.00 0.00 0.00 3.10
9340 13570 4.639310 CAGCTTCTGTGCCAAATTAGAGAT 59.361 41.667 0.00 0.00 0.00 2.75
9346 13576 8.579850 TTCTGTGCCAAATTAGAGATGTATTT 57.420 30.769 0.00 0.00 0.00 1.40
9378 13608 4.154015 CGTGTCCAATGCTAGTGAAATTGA 59.846 41.667 9.66 0.00 33.96 2.57
9459 13689 5.237779 GTCACACTTTGGAAATTACCTTCGA 59.762 40.000 0.00 0.00 0.00 3.71
9565 13836 9.763465 CAAAGTTTACAAAGTTCGACTTTAGAA 57.237 29.630 11.08 7.13 45.84 2.10
9616 13887 4.281657 GCAAGGAGGGGATATGAAAACTT 58.718 43.478 0.00 0.00 0.00 2.66
9617 13888 4.711846 GCAAGGAGGGGATATGAAAACTTT 59.288 41.667 0.00 0.00 0.00 2.66
9618 13889 5.394553 GCAAGGAGGGGATATGAAAACTTTG 60.395 44.000 0.00 0.00 0.00 2.77
9654 13925 6.306643 AGGTTGACTTTTTCAAAATTGGGA 57.693 33.333 0.00 0.00 46.09 4.37
9655 13926 6.112734 AGGTTGACTTTTTCAAAATTGGGAC 58.887 36.000 0.00 0.00 46.09 4.46
9695 13969 8.772705 GCATGAAAATTTCTTAATGTTGGAACA 58.227 29.630 7.29 0.00 44.06 3.18
9711 13985 6.533367 TGTTGGAACATTTTCTAAACTTGCAC 59.467 34.615 0.00 0.00 39.30 4.57
9907 14182 4.830765 GTCGGCCCAGTATGCGCA 62.831 66.667 14.96 14.96 42.93 6.09
9911 14186 2.046285 GGCCCAGTATGCGCAAGTT 61.046 57.895 17.11 0.00 42.93 2.66
9912 14187 0.746563 GGCCCAGTATGCGCAAGTTA 60.747 55.000 17.11 0.00 42.93 2.24
9933 14208 2.025321 ACGGGTTTGCTCCATTCCTATT 60.025 45.455 0.00 0.00 0.00 1.73
9936 14211 2.223572 GGTTTGCTCCATTCCTATTGCG 60.224 50.000 0.00 0.00 0.00 4.85
9952 14227 2.932083 GCGGATATGCGCGACACAG 61.932 63.158 25.73 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.149474 CGAACAAACTCACTAAAATGGGAGAT 59.851 38.462 0.45 0.00 0.00 2.75
2 3 5.689819 CGAACAAACTCACTAAAATGGGAG 58.310 41.667 0.00 0.00 0.00 4.30
5 6 5.108385 AGCGAACAAACTCACTAAAATGG 57.892 39.130 0.00 0.00 0.00 3.16
6 7 5.747565 TGAGCGAACAAACTCACTAAAATG 58.252 37.500 0.00 0.00 37.99 2.32
7 8 6.560253 ATGAGCGAACAAACTCACTAAAAT 57.440 33.333 0.00 0.00 45.19 1.82
8 9 6.371809 AATGAGCGAACAAACTCACTAAAA 57.628 33.333 0.00 0.00 45.19 1.52
9 10 6.037720 TGAAATGAGCGAACAAACTCACTAAA 59.962 34.615 0.00 0.00 45.19 1.85
11 12 5.053811 TGAAATGAGCGAACAAACTCACTA 58.946 37.500 0.00 0.00 45.19 2.74
14 15 3.876914 ACTGAAATGAGCGAACAAACTCA 59.123 39.130 0.00 0.00 46.34 3.41
15 16 4.212214 AGACTGAAATGAGCGAACAAACTC 59.788 41.667 0.00 0.00 0.00 3.01
22 23 4.627035 CACATACAGACTGAAATGAGCGAA 59.373 41.667 21.47 0.00 0.00 4.70
24 25 3.308053 CCACATACAGACTGAAATGAGCG 59.692 47.826 21.47 12.75 0.00 5.03
26 27 5.934043 TGAACCACATACAGACTGAAATGAG 59.066 40.000 21.47 15.95 0.00 2.90
27 28 5.863965 TGAACCACATACAGACTGAAATGA 58.136 37.500 21.47 3.71 0.00 2.57
30 31 8.100164 TGAATATGAACCACATACAGACTGAAA 58.900 33.333 10.08 0.00 43.12 2.69
33 34 7.848223 TTGAATATGAACCACATACAGACTG 57.152 36.000 0.00 0.00 43.12 3.51
76 77 8.530804 ACATAGTACTACCTCCGTTCTAAATT 57.469 34.615 4.31 0.00 0.00 1.82
105 106 9.257865 GCGTCGCGATATATGTTAATAAATTTT 57.742 29.630 14.06 0.00 0.00 1.82
106 107 8.653338 AGCGTCGCGATATATGTTAATAAATTT 58.347 29.630 14.06 0.00 0.00 1.82
108 109 7.751047 AGCGTCGCGATATATGTTAATAAAT 57.249 32.000 14.06 0.00 0.00 1.40
110 111 6.802834 TCAAGCGTCGCGATATATGTTAATAA 59.197 34.615 14.06 0.00 0.00 1.40
112 113 5.060569 GTCAAGCGTCGCGATATATGTTAAT 59.939 40.000 14.06 0.00 0.00 1.40
113 114 4.380678 GTCAAGCGTCGCGATATATGTTAA 59.619 41.667 14.06 0.00 0.00 2.01
114 115 3.910170 GTCAAGCGTCGCGATATATGTTA 59.090 43.478 14.06 0.00 0.00 2.41
115 116 2.724690 GTCAAGCGTCGCGATATATGTT 59.275 45.455 14.06 0.00 0.00 2.71
116 117 2.031069 AGTCAAGCGTCGCGATATATGT 60.031 45.455 14.06 0.00 0.00 2.29
119 120 1.398071 CGAGTCAAGCGTCGCGATATA 60.398 52.381 14.06 0.00 0.00 0.86
120 121 0.657659 CGAGTCAAGCGTCGCGATAT 60.658 55.000 14.06 0.00 0.00 1.63
121 122 1.297378 CGAGTCAAGCGTCGCGATA 60.297 57.895 14.06 0.00 0.00 2.92
122 123 2.577112 CGAGTCAAGCGTCGCGAT 60.577 61.111 14.06 1.70 0.00 4.58
123 124 3.923356 GACGAGTCAAGCGTCGCGA 62.923 63.158 12.30 3.71 46.85 5.87
124 125 3.524759 GACGAGTCAAGCGTCGCG 61.525 66.667 12.30 0.00 46.85 5.87
129 130 1.669158 CGCAAGAGACGAGTCAAGCG 61.669 60.000 5.99 10.62 43.02 4.68
130 131 1.347817 CCGCAAGAGACGAGTCAAGC 61.348 60.000 5.99 3.20 43.02 4.01
132 133 0.241213 CTCCGCAAGAGACGAGTCAA 59.759 55.000 5.99 0.00 46.50 3.18
133 134 1.876664 CTCCGCAAGAGACGAGTCA 59.123 57.895 5.99 0.00 46.50 3.41
134 135 1.515304 GCTCCGCAAGAGACGAGTC 60.515 63.158 4.96 0.00 46.50 3.36
135 136 1.974343 AGCTCCGCAAGAGACGAGT 60.974 57.895 4.96 0.00 46.50 4.18
136 137 1.515952 CAGCTCCGCAAGAGACGAG 60.516 63.158 4.96 0.00 46.50 4.18
137 138 2.568612 CAGCTCCGCAAGAGACGA 59.431 61.111 4.96 0.00 46.50 4.20
138 139 2.507992 CCAGCTCCGCAAGAGACG 60.508 66.667 4.96 0.00 46.50 4.18
139 140 1.446966 GTCCAGCTCCGCAAGAGAC 60.447 63.158 4.96 0.00 46.50 3.36
141 142 2.507992 CGTCCAGCTCCGCAAGAG 60.508 66.667 0.00 0.00 46.29 2.85
149 150 2.071844 TATACAGCCGCGTCCAGCTC 62.072 60.000 4.92 0.00 45.59 4.09
150 151 1.464376 ATATACAGCCGCGTCCAGCT 61.464 55.000 4.92 3.00 45.59 4.24
151 152 0.242825 TATATACAGCCGCGTCCAGC 59.757 55.000 4.92 0.00 43.95 4.85
153 154 1.538512 GTCTATATACAGCCGCGTCCA 59.461 52.381 4.92 0.00 0.00 4.02
155 156 1.196354 ACGTCTATATACAGCCGCGTC 59.804 52.381 4.92 0.00 0.00 5.19
156 157 1.069432 CACGTCTATATACAGCCGCGT 60.069 52.381 4.92 0.00 0.00 6.01
158 159 2.582687 GTCACGTCTATATACAGCCGC 58.417 52.381 0.00 0.00 0.00 6.53
161 162 4.084171 TGCTACGTCACGTCTATATACAGC 60.084 45.833 5.85 8.48 41.54 4.40
162 163 5.050567 TGTGCTACGTCACGTCTATATACAG 60.051 44.000 5.85 0.00 41.54 2.74
164 165 5.050499 ACTGTGCTACGTCACGTCTATATAC 60.050 44.000 5.85 0.00 41.54 1.47
166 167 3.875727 ACTGTGCTACGTCACGTCTATAT 59.124 43.478 5.85 0.00 41.54 0.86
167 168 3.063045 CACTGTGCTACGTCACGTCTATA 59.937 47.826 5.85 0.00 41.54 1.31
169 170 1.196127 CACTGTGCTACGTCACGTCTA 59.804 52.381 5.85 0.00 41.54 2.59
171 172 0.317603 ACACTGTGCTACGTCACGTC 60.318 55.000 5.85 0.00 41.54 4.34
172 173 0.101759 AACACTGTGCTACGTCACGT 59.898 50.000 8.49 8.49 44.35 4.49
173 174 0.502695 CAACACTGTGCTACGTCACG 59.497 55.000 7.90 0.00 39.73 4.35
174 175 1.847818 TCAACACTGTGCTACGTCAC 58.152 50.000 7.90 0.00 37.48 3.67
175 176 2.403259 CATCAACACTGTGCTACGTCA 58.597 47.619 7.90 0.00 0.00 4.35
177 178 1.148310 GCATCAACACTGTGCTACGT 58.852 50.000 7.90 0.00 36.02 3.57
178 179 1.127397 CAGCATCAACACTGTGCTACG 59.873 52.381 7.90 0.00 46.67 3.51
180 181 2.549064 ACAGCATCAACACTGTGCTA 57.451 45.000 7.90 0.00 46.67 3.49
185 186 0.520404 GAGGCACAGCATCAACACTG 59.480 55.000 0.00 0.00 39.28 3.66
186 187 0.952497 CGAGGCACAGCATCAACACT 60.952 55.000 4.51 0.00 39.45 3.55
188 189 1.672030 CCGAGGCACAGCATCAACA 60.672 57.895 4.51 0.00 39.45 3.33
189 190 3.044059 GCCGAGGCACAGCATCAAC 62.044 63.158 9.58 0.00 39.45 3.18
190 191 2.747460 GCCGAGGCACAGCATCAA 60.747 61.111 9.58 0.00 39.45 2.57
202 203 2.219325 GATAGGAGGGATGCGCCGAG 62.219 65.000 4.18 0.00 37.63 4.63
203 204 2.203640 ATAGGAGGGATGCGCCGA 60.204 61.111 4.18 0.00 37.63 5.54
204 205 2.262915 GATAGGAGGGATGCGCCG 59.737 66.667 4.18 0.00 37.63 6.46
206 207 1.294780 CTGGATAGGAGGGATGCGC 59.705 63.158 0.00 0.00 0.00 6.09
217 218 2.049627 GAGGTGGCAGGCCTGGATAG 62.050 65.000 33.46 8.95 36.29 2.08
218 219 2.042762 AGGTGGCAGGCCTGGATA 59.957 61.111 33.46 4.99 34.56 2.59
234 235 2.804368 GATAGGACGGATGCGGCGAG 62.804 65.000 12.98 0.00 0.00 5.03
235 236 2.910479 ATAGGACGGATGCGGCGA 60.910 61.111 12.98 0.00 0.00 5.54
236 237 2.430921 GATAGGACGGATGCGGCG 60.431 66.667 12.44 0.51 0.00 6.46
237 238 2.048127 GGATAGGACGGATGCGGC 60.048 66.667 12.44 8.08 0.00 6.53
238 239 1.290324 CTGGATAGGACGGATGCGG 59.710 63.158 12.44 0.00 0.00 5.69
260 261 1.473497 TTGATCCGTTGGGTGGTCGA 61.473 55.000 0.00 0.00 33.83 4.20
261 262 0.604243 TTTGATCCGTTGGGTGGTCG 60.604 55.000 0.00 0.00 33.83 4.79
262 263 1.834188 ATTTGATCCGTTGGGTGGTC 58.166 50.000 0.00 0.00 33.83 4.02
263 264 3.443145 TTATTTGATCCGTTGGGTGGT 57.557 42.857 0.00 0.00 33.83 4.16
266 267 2.162809 GCGTTTATTTGATCCGTTGGGT 59.837 45.455 0.00 0.00 33.83 4.51
267 268 2.162608 TGCGTTTATTTGATCCGTTGGG 59.837 45.455 0.00 0.00 0.00 4.12
268 269 3.425404 CTGCGTTTATTTGATCCGTTGG 58.575 45.455 0.00 0.00 0.00 3.77
269 270 2.845967 GCTGCGTTTATTTGATCCGTTG 59.154 45.455 0.00 0.00 0.00 4.10
270 271 2.486203 TGCTGCGTTTATTTGATCCGTT 59.514 40.909 0.00 0.00 0.00 4.44
271 272 2.080693 TGCTGCGTTTATTTGATCCGT 58.919 42.857 0.00 0.00 0.00 4.69
272 273 2.095853 AGTGCTGCGTTTATTTGATCCG 59.904 45.455 0.00 0.00 0.00 4.18
273 274 3.764885 AGTGCTGCGTTTATTTGATCC 57.235 42.857 0.00 0.00 0.00 3.36
274 275 3.301642 GCAAGTGCTGCGTTTATTTGATC 59.698 43.478 0.00 0.00 42.37 2.92
275 276 3.244976 GCAAGTGCTGCGTTTATTTGAT 58.755 40.909 0.00 0.00 42.37 2.57
289 290 1.160137 CCTTCTACCAGTGCAAGTGC 58.840 55.000 0.00 0.00 35.41 4.40
290 291 1.160137 GCCTTCTACCAGTGCAAGTG 58.840 55.000 0.00 0.00 36.90 3.16
291 292 0.764890 TGCCTTCTACCAGTGCAAGT 59.235 50.000 0.00 0.00 0.00 3.16
293 294 2.161855 CATTGCCTTCTACCAGTGCAA 58.838 47.619 0.00 0.00 44.96 4.08
299 300 1.667236 CATCGCATTGCCTTCTACCA 58.333 50.000 2.41 0.00 0.00 3.25
300 301 0.308993 GCATCGCATTGCCTTCTACC 59.691 55.000 2.41 0.00 36.60 3.18
303 304 0.679002 ACAGCATCGCATTGCCTTCT 60.679 50.000 2.41 0.00 43.83 2.85
304 305 0.248377 GACAGCATCGCATTGCCTTC 60.248 55.000 2.41 0.00 43.83 3.46
305 306 1.660560 GGACAGCATCGCATTGCCTT 61.661 55.000 2.41 0.00 43.83 4.35
306 307 2.117156 GGACAGCATCGCATTGCCT 61.117 57.895 2.41 0.00 43.83 4.75
308 309 2.409055 TGGGACAGCATCGCATTGC 61.409 57.895 0.00 0.00 44.84 3.56
309 310 3.908189 TGGGACAGCATCGCATTG 58.092 55.556 3.94 0.00 44.84 2.82
321 322 1.154205 CGCAGGAATGTCGATGGGAC 61.154 60.000 0.00 0.00 46.27 4.46
323 324 2.537560 GCGCAGGAATGTCGATGGG 61.538 63.158 0.30 0.00 0.00 4.00
324 325 1.815003 TGCGCAGGAATGTCGATGG 60.815 57.895 5.66 0.00 0.00 3.51
325 326 1.349627 GTGCGCAGGAATGTCGATG 59.650 57.895 12.22 0.00 0.00 3.84
326 327 2.167219 CGTGCGCAGGAATGTCGAT 61.167 57.895 25.09 0.00 0.00 3.59
327 328 2.809174 CGTGCGCAGGAATGTCGA 60.809 61.111 25.09 0.00 0.00 4.20
329 330 2.434185 TCCGTGCGCAGGAATGTC 60.434 61.111 30.22 6.76 34.33 3.06
331 332 3.853330 CGTCCGTGCGCAGGAATG 61.853 66.667 30.22 13.34 39.84 2.67
344 345 4.072088 CAAAGTCGTGCGGCGTCC 62.072 66.667 9.37 0.00 42.13 4.79
345 346 4.719616 GCAAAGTCGTGCGGCGTC 62.720 66.667 9.37 0.91 42.13 5.19
348 349 4.683334 GTGGCAAAGTCGTGCGGC 62.683 66.667 0.00 0.00 45.91 6.53
350 351 1.369209 CTTGTGGCAAAGTCGTGCG 60.369 57.895 0.00 0.00 45.91 5.34
351 352 1.008538 CCTTGTGGCAAAGTCGTGC 60.009 57.895 0.00 0.00 44.14 5.34
352 353 0.307760 GTCCTTGTGGCAAAGTCGTG 59.692 55.000 0.00 0.00 0.00 4.35
353 354 1.157870 CGTCCTTGTGGCAAAGTCGT 61.158 55.000 0.00 0.00 0.00 4.34
354 355 0.878523 TCGTCCTTGTGGCAAAGTCG 60.879 55.000 0.00 3.83 0.00 4.18
355 356 0.586802 GTCGTCCTTGTGGCAAAGTC 59.413 55.000 0.00 0.00 0.00 3.01
358 359 1.098712 GTGGTCGTCCTTGTGGCAAA 61.099 55.000 0.00 0.00 34.23 3.68
360 361 2.110213 GTGGTCGTCCTTGTGGCA 59.890 61.111 0.00 0.00 34.23 4.92
361 362 3.041940 CGTGGTCGTCCTTGTGGC 61.042 66.667 0.00 0.00 34.23 5.01
362 363 2.357034 CCGTGGTCGTCCTTGTGG 60.357 66.667 0.00 0.00 35.01 4.17
363 364 1.663702 GTCCGTGGTCGTCCTTGTG 60.664 63.158 0.00 0.00 35.01 3.33
365 366 2.430244 CGTCCGTGGTCGTCCTTG 60.430 66.667 0.00 0.00 35.01 3.61
366 367 3.677648 CCGTCCGTGGTCGTCCTT 61.678 66.667 0.00 0.00 35.01 3.36
367 368 4.648626 TCCGTCCGTGGTCGTCCT 62.649 66.667 0.00 0.00 35.01 3.85
368 369 4.112341 CTCCGTCCGTGGTCGTCC 62.112 72.222 4.93 0.00 35.01 4.79
369 370 4.112341 CCTCCGTCCGTGGTCGTC 62.112 72.222 4.93 0.00 35.01 4.20
373 374 1.916777 ATTTCCCTCCGTCCGTGGT 60.917 57.895 0.00 0.00 0.00 4.16
375 376 2.106683 GCATTTCCCTCCGTCCGTG 61.107 63.158 0.00 0.00 0.00 4.94
376 377 2.267961 GCATTTCCCTCCGTCCGT 59.732 61.111 0.00 0.00 0.00 4.69
377 378 2.513897 GGCATTTCCCTCCGTCCG 60.514 66.667 0.00 0.00 0.00 4.79
396 397 4.728102 TCGTGTTAGGTGGCGGCG 62.728 66.667 0.51 0.51 0.00 6.46
397 398 2.125269 ATCGTGTTAGGTGGCGGC 60.125 61.111 0.00 0.00 0.00 6.53
398 399 1.813753 CCATCGTGTTAGGTGGCGG 60.814 63.158 0.00 0.00 0.00 6.13
399 400 1.813753 CCCATCGTGTTAGGTGGCG 60.814 63.158 0.00 0.00 0.00 5.69
400 401 0.035820 TTCCCATCGTGTTAGGTGGC 60.036 55.000 0.00 0.00 0.00 5.01
402 403 2.618053 GTCTTCCCATCGTGTTAGGTG 58.382 52.381 0.00 0.00 0.00 4.00
403 404 1.203994 CGTCTTCCCATCGTGTTAGGT 59.796 52.381 0.00 0.00 0.00 3.08
404 405 1.203994 ACGTCTTCCCATCGTGTTAGG 59.796 52.381 0.00 0.00 36.46 2.69
408 1889 4.988065 CACGTCTTCCCATCGTGT 57.012 55.556 8.44 0.00 46.11 4.49
420 1901 0.039074 CCTCTCCTCACACACACGTC 60.039 60.000 0.00 0.00 0.00 4.34
457 1946 4.101790 GACACGCGTGGCAATGGG 62.102 66.667 38.93 13.98 38.82 4.00
458 1947 4.444024 CGACACGCGTGGCAATGG 62.444 66.667 41.05 23.48 38.95 3.16
499 1990 1.331756 CTGGCATCGAAAATTCTCCCG 59.668 52.381 0.00 0.00 0.00 5.14
506 1997 2.489329 CAACTGTCCTGGCATCGAAAAT 59.511 45.455 0.00 0.00 0.00 1.82
527 2018 3.629142 ATAGTTGCCAAGTGTCCTACC 57.371 47.619 0.00 0.00 0.00 3.18
528 2019 4.324267 ACAATAGTTGCCAAGTGTCCTAC 58.676 43.478 0.00 0.00 0.00 3.18
529 2020 4.634012 ACAATAGTTGCCAAGTGTCCTA 57.366 40.909 0.00 0.00 0.00 2.94
530 2021 3.508845 ACAATAGTTGCCAAGTGTCCT 57.491 42.857 0.00 0.00 0.00 3.85
531 2022 4.324267 AGTACAATAGTTGCCAAGTGTCC 58.676 43.478 0.00 0.00 0.00 4.02
606 2101 1.743252 GAGGTGAGAAAGGCTGCGG 60.743 63.158 0.00 0.00 0.00 5.69
610 2105 0.980423 GAGGTGAGGTGAGAAAGGCT 59.020 55.000 0.00 0.00 0.00 4.58
620 2115 0.900647 AAGCTACGCTGAGGTGAGGT 60.901 55.000 0.00 0.00 39.62 3.85
623 2118 1.681793 GGATAAGCTACGCTGAGGTGA 59.318 52.381 0.00 0.00 39.62 4.02
625 2120 1.041437 GGGATAAGCTACGCTGAGGT 58.959 55.000 0.00 0.00 39.62 3.85
626 2121 1.040646 TGGGATAAGCTACGCTGAGG 58.959 55.000 0.00 0.00 39.62 3.86
628 2123 2.035961 GTGATGGGATAAGCTACGCTGA 59.964 50.000 0.00 0.00 39.62 4.26
629 2124 2.408050 GTGATGGGATAAGCTACGCTG 58.592 52.381 0.00 0.00 39.62 5.18
630 2125 1.000163 CGTGATGGGATAAGCTACGCT 60.000 52.381 0.00 0.00 42.56 5.07
632 2127 2.795175 ACGTGATGGGATAAGCTACG 57.205 50.000 0.00 0.00 36.28 3.51
633 2128 5.116882 AGAAAACGTGATGGGATAAGCTAC 58.883 41.667 0.00 0.00 0.00 3.58
634 2129 5.353394 AGAAAACGTGATGGGATAAGCTA 57.647 39.130 0.00 0.00 0.00 3.32
635 2130 4.222124 AGAAAACGTGATGGGATAAGCT 57.778 40.909 0.00 0.00 0.00 3.74
636 2131 4.965119 AAGAAAACGTGATGGGATAAGC 57.035 40.909 0.00 0.00 0.00 3.09
685 4576 2.359478 GGCCATTCGTCCACCGTT 60.359 61.111 0.00 0.00 37.94 4.44
718 4609 5.030295 GCAATATTCGTCAATGGACACAAG 58.970 41.667 0.13 0.00 44.54 3.16
729 4620 1.133598 ACGAGGTCGCAATATTCGTCA 59.866 47.619 0.00 0.00 40.06 4.35
730 4621 1.836383 ACGAGGTCGCAATATTCGTC 58.164 50.000 0.00 3.04 40.06 4.20
733 4624 3.242316 GGTTGAACGAGGTCGCAATATTC 60.242 47.826 0.00 0.00 44.43 1.75
742 4633 0.597072 AGACGAGGTTGAACGAGGTC 59.403 55.000 0.00 3.95 0.00 3.85
748 4639 2.485814 ACGTAGGTAGACGAGGTTGAAC 59.514 50.000 2.55 0.00 45.82 3.18
750 4641 2.479566 ACGTAGGTAGACGAGGTTGA 57.520 50.000 2.55 0.00 45.82 3.18
797 4717 4.798433 ACACGTGCATGGTGTGAT 57.202 50.000 21.26 2.10 46.22 3.06
840 4760 3.436001 CGTGGTAGGACGCTCATTT 57.564 52.632 0.00 0.00 31.56 2.32
874 4794 2.224209 CCCTCTTACGCCGTGGAAATAT 60.224 50.000 0.00 0.00 0.00 1.28
888 4808 2.900546 GCTTAGCTATCTGGCCCTCTTA 59.099 50.000 0.00 0.00 0.00 2.10
929 4849 2.572104 AGAATAGAAACCGGGAGTGCTT 59.428 45.455 6.32 0.00 0.00 3.91
943 4863 6.798427 ACTATGTTGCTCAAGGAGAATAGA 57.202 37.500 0.00 0.00 0.00 1.98
945 4865 8.318412 TGTTAACTATGTTGCTCAAGGAGAATA 58.682 33.333 7.22 0.00 0.00 1.75
953 4873 5.051153 TGTCGTGTTAACTATGTTGCTCAA 58.949 37.500 7.22 0.00 0.00 3.02
955 4875 5.779806 ATGTCGTGTTAACTATGTTGCTC 57.220 39.130 7.22 0.00 0.00 4.26
1063 4990 1.145803 GGTTGTGGCTCGTAACTCAC 58.854 55.000 0.00 0.00 0.00 3.51
1115 5043 8.890718 GGGACTTTACCTGAAAACATATTAGAC 58.109 37.037 0.00 0.00 0.00 2.59
1117 5045 7.466860 GCGGGACTTTACCTGAAAACATATTAG 60.467 40.741 0.00 0.00 38.49 1.73
1119 5047 5.124936 GCGGGACTTTACCTGAAAACATATT 59.875 40.000 0.00 0.00 38.49 1.28
1120 5048 4.638865 GCGGGACTTTACCTGAAAACATAT 59.361 41.667 0.00 0.00 38.49 1.78
1122 5050 2.817844 GCGGGACTTTACCTGAAAACAT 59.182 45.455 0.00 0.00 38.49 2.71
1124 5052 2.223745 TGCGGGACTTTACCTGAAAAC 58.776 47.619 0.00 0.00 38.49 2.43
1125 5053 2.642154 TGCGGGACTTTACCTGAAAA 57.358 45.000 0.00 0.00 38.49 2.29
1126 5054 2.642154 TTGCGGGACTTTACCTGAAA 57.358 45.000 0.00 0.00 38.49 2.69
1127 5055 2.642154 TTTGCGGGACTTTACCTGAA 57.358 45.000 0.00 0.00 38.49 3.02
1128 5056 2.105134 TCTTTTGCGGGACTTTACCTGA 59.895 45.455 0.00 0.00 38.49 3.86
1129 5057 2.500229 TCTTTTGCGGGACTTTACCTG 58.500 47.619 0.00 0.00 39.16 4.00
1130 5058 2.943036 TCTTTTGCGGGACTTTACCT 57.057 45.000 0.00 0.00 0.00 3.08
1224 5152 7.296660 AGCTAGTGTTCGATATATACAACGAC 58.703 38.462 7.64 5.43 34.59 4.34
1226 5154 9.263626 CTAAGCTAGTGTTCGATATATACAACG 57.736 37.037 0.00 0.00 0.00 4.10
1290 5223 5.191722 ACATATCTGAGCCCTACTGGAAAAA 59.808 40.000 0.00 0.00 35.39 1.94
1291 5224 4.721776 ACATATCTGAGCCCTACTGGAAAA 59.278 41.667 0.00 0.00 35.39 2.29
1292 5225 4.298626 ACATATCTGAGCCCTACTGGAAA 58.701 43.478 0.00 0.00 35.39 3.13
1293 5226 3.928754 ACATATCTGAGCCCTACTGGAA 58.071 45.455 0.00 0.00 35.39 3.53
1403 5343 3.958798 ACTGCTTTCGACCTTATAGCCTA 59.041 43.478 0.00 0.00 0.00 3.93
1411 5351 3.020984 TCCAAAAACTGCTTTCGACCTT 58.979 40.909 0.00 0.00 0.00 3.50
1417 5357 2.127251 CGGCTTCCAAAAACTGCTTTC 58.873 47.619 0.00 0.00 0.00 2.62
1421 5361 0.664466 GCTCGGCTTCCAAAAACTGC 60.664 55.000 0.00 0.00 0.00 4.40
1429 5370 1.552799 TTCATGGAGCTCGGCTTCCA 61.553 55.000 7.83 14.41 39.88 3.53
1556 5498 6.093495 TCACATCCCTCATTTCAACGTATTTC 59.907 38.462 0.00 0.00 0.00 2.17
1588 5530 7.639378 AGTATAATGGGTTGAAAAGCTAAGGA 58.361 34.615 0.00 0.00 45.30 3.36
1593 5535 8.282256 AGGAATAGTATAATGGGTTGAAAAGCT 58.718 33.333 0.00 0.00 45.30 3.74
1594 5536 8.465273 AGGAATAGTATAATGGGTTGAAAAGC 57.535 34.615 0.00 0.00 45.23 3.51
1604 5546 7.091533 ACTTTGGGGAGGAATAGTATAATGG 57.908 40.000 0.00 0.00 0.00 3.16
1658 5600 7.319142 TCACGATGAAATATCTTGAATTGCA 57.681 32.000 0.00 0.00 0.00 4.08
1685 5627 7.537306 GGATGAAATGTATGTGTGTGTGTAAAC 59.463 37.037 0.00 0.00 0.00 2.01
1689 5631 5.316167 AGGATGAAATGTATGTGTGTGTGT 58.684 37.500 0.00 0.00 0.00 3.72
1690 5632 5.885230 AGGATGAAATGTATGTGTGTGTG 57.115 39.130 0.00 0.00 0.00 3.82
1766 5708 8.151596 AGGAGGCCGAAAATTTTAAACAATTTA 58.848 29.630 2.75 0.00 35.67 1.40
1769 5711 6.109156 AGGAGGCCGAAAATTTTAAACAAT 57.891 33.333 2.75 0.00 0.00 2.71
1792 5734 0.111446 TTTTGGTGATCGGGCTCCAA 59.889 50.000 7.54 7.54 39.04 3.53
1899 5841 8.389779 TCTCATTCAAGAGTCTAGCTGTATAG 57.610 38.462 0.00 0.00 36.97 1.31
1900 5842 7.040755 GCTCTCATTCAAGAGTCTAGCTGTATA 60.041 40.741 0.00 0.00 43.92 1.47
1904 5846 4.098349 AGCTCTCATTCAAGAGTCTAGCTG 59.902 45.833 8.63 0.00 43.92 4.24
1959 5901 7.485913 GCTTACATGACATTTTTGTCTATGTGG 59.514 37.037 21.19 17.07 39.02 4.17
2064 6010 7.898014 AGATACAAATTTGGGGATTAACTCC 57.102 36.000 21.74 0.99 44.11 3.85
2076 6022 8.236585 TGAATGGGGTCATAGATACAAATTTG 57.763 34.615 16.67 16.67 32.44 2.32
2128 6074 2.954753 GCCAGGAAGTTCACACGCG 61.955 63.158 3.53 3.53 0.00 6.01
2203 6150 9.238368 CCCTAAGAAAACAATGTAGGTAAATGA 57.762 33.333 0.00 0.00 31.15 2.57
2214 6161 2.752903 CCCCGTCCCTAAGAAAACAATG 59.247 50.000 0.00 0.00 0.00 2.82
2215 6162 2.291346 CCCCCGTCCCTAAGAAAACAAT 60.291 50.000 0.00 0.00 0.00 2.71
2218 6165 3.564262 CCCCCGTCCCTAAGAAAAC 57.436 57.895 0.00 0.00 0.00 2.43
2292 6240 8.946085 TCTACAGACATGGATGTAATTTTTGTC 58.054 33.333 11.86 0.00 41.95 3.18
2360 6310 2.284625 AGGGGCGATGAGTGGTCA 60.285 61.111 0.00 0.00 37.02 4.02
2380 6331 1.315257 ATTTGCCCGGCTCATGTGAC 61.315 55.000 11.61 0.00 0.00 3.67
2384 6335 0.101759 CAAGATTTGCCCGGCTCATG 59.898 55.000 11.61 0.00 0.00 3.07
2407 6358 5.163703 ACGATGACTTCATGTCTGTCTACTC 60.164 44.000 0.00 8.65 45.54 2.59
2427 6378 1.822990 TCCTTTCGGACTTAGCACGAT 59.177 47.619 0.00 0.00 36.43 3.73
2455 6407 2.289631 TGGTGACTGCTACTGTTCCATG 60.290 50.000 0.00 0.00 0.00 3.66
2456 6408 1.977854 TGGTGACTGCTACTGTTCCAT 59.022 47.619 0.00 0.00 0.00 3.41
2457 6409 1.419381 TGGTGACTGCTACTGTTCCA 58.581 50.000 0.00 0.00 0.00 3.53
2679 6644 2.282462 CAGGAAGGCAAGGCGGTT 60.282 61.111 0.00 0.00 0.00 4.44
2729 6694 2.094854 GCTCCTGCTTCATTTTGAGGTG 60.095 50.000 0.00 0.00 36.03 4.00
2745 6713 2.741159 TATATGGTGGGATGGCTCCT 57.259 50.000 3.54 0.00 41.74 3.69
2774 6742 0.700269 ATGGAGGCATGGTGGATCCT 60.700 55.000 14.23 0.00 37.07 3.24
2833 6801 3.739613 GGGTTTCCCCGCCTCCAT 61.740 66.667 0.00 0.00 42.41 3.41
2859 6833 2.603473 CCCCACGACAGACTCCCA 60.603 66.667 0.00 0.00 0.00 4.37
2968 6942 9.656040 GATGATATCAGCCCATATGAATATCTC 57.344 37.037 9.91 0.00 0.00 2.75
2970 6944 9.656040 GAGATGATATCAGCCCATATGAATATC 57.344 37.037 17.12 8.95 31.57 1.63
2999 6973 6.539464 TGGATAACGAAGTGTTAACAACAACT 59.461 34.615 10.51 0.00 45.00 3.16
3100 7074 0.250166 CATGATGATGCAGAGGCCGA 60.250 55.000 0.00 0.00 40.13 5.54
3102 7076 1.813178 CATCATGATGATGCAGAGGCC 59.187 52.381 28.37 0.00 46.37 5.19
3172 7146 5.633830 AATTGACTTGTTACCAGCATCAG 57.366 39.130 0.00 0.00 0.00 2.90
3197 7171 9.237187 TGCAGAAATTTCCATGTTATAGTAACA 57.763 29.630 14.61 5.15 34.31 2.41
3249 7223 2.179204 TCGGATGGGAATCCTCCTCTTA 59.821 50.000 0.00 0.00 42.05 2.10
3268 7242 8.853345 CAAATTTGTCATCCTATTTGTCTTTCG 58.147 33.333 10.15 0.00 34.74 3.46
3274 7248 8.530311 TGTATGCAAATTTGTCATCCTATTTGT 58.470 29.630 22.74 7.59 39.18 2.83
3440 7414 1.148273 TTGGCATATGTCGGGGCTC 59.852 57.895 2.28 0.00 0.00 4.70
3577 7551 1.285667 TCTCCCATCCATGCATGTTGT 59.714 47.619 24.58 7.83 0.00 3.32
3641 7615 9.490663 GATGTTTCCATTTATTACTTTCGACTG 57.509 33.333 0.00 0.00 0.00 3.51
3642 7616 9.449719 AGATGTTTCCATTTATTACTTTCGACT 57.550 29.630 0.00 0.00 0.00 4.18
3656 7630 4.215399 CGTGTGGTTGTAGATGTTTCCATT 59.785 41.667 0.00 0.00 0.00 3.16
3668 7642 4.059511 CCTTACAATGTCGTGTGGTTGTA 58.940 43.478 0.00 0.00 36.34 2.41
3715 7689 7.421530 TTGCGTATAATAGATTGGAGAAAGC 57.578 36.000 0.00 0.00 0.00 3.51
3816 7790 2.702592 TGAACGCCCCATACTTTAGG 57.297 50.000 0.00 0.00 0.00 2.69
3930 7905 8.635765 AGAGATACTTGCCTTCTCTTAGATAG 57.364 38.462 0.00 0.00 42.71 2.08
3969 7944 4.446371 GGATACTTGGTCATGTGGAAGAG 58.554 47.826 0.00 0.00 0.00 2.85
3988 7963 9.950496 GGTCATGTAAAATGATCTACATAGGAT 57.050 33.333 5.33 0.00 36.77 3.24
4053 8028 6.811253 TTCCTTCGCATAACTTTACACATT 57.189 33.333 0.00 0.00 0.00 2.71
4135 8110 8.836109 GTGAAACAAAATTGCAAGTACAAAAAC 58.164 29.630 4.94 0.00 36.32 2.43
4153 8128 9.275398 ACTTTCGTACAATTATAGGTGAAACAA 57.725 29.630 0.00 0.00 39.98 2.83
4154 8129 8.836268 ACTTTCGTACAATTATAGGTGAAACA 57.164 30.769 0.00 0.00 39.98 2.83
4155 8130 8.928733 TGACTTTCGTACAATTATAGGTGAAAC 58.071 33.333 0.00 0.00 0.00 2.78
4165 8140 9.483916 TGAGAAGAAATGACTTTCGTACAATTA 57.516 29.630 0.00 0.00 44.52 1.40
4281 8256 6.941436 ACATGCACCCAATTTAACATTTGAAT 59.059 30.769 0.00 0.00 0.00 2.57
4289 8264 4.705023 AGGTCTACATGCACCCAATTTAAC 59.295 41.667 5.63 0.00 32.45 2.01
4320 8295 6.828788 AGTGTGACCTAGTATCTCGATTCTA 58.171 40.000 0.00 0.00 0.00 2.10
4322 8297 7.675962 ATAGTGTGACCTAGTATCTCGATTC 57.324 40.000 0.00 0.00 0.00 2.52
4325 8300 9.872721 CTTATATAGTGTGACCTAGTATCTCGA 57.127 37.037 0.00 0.00 0.00 4.04
4326 8301 9.872721 TCTTATATAGTGTGACCTAGTATCTCG 57.127 37.037 0.00 0.00 0.00 4.04
4364 8339 2.017049 GCCTTGTGGTTGGCTATACTG 58.983 52.381 0.00 0.00 45.26 2.74
4610 8586 6.825721 CCTTAGTAGAAATCTTGCCATTGAGT 59.174 38.462 0.00 0.00 0.00 3.41
4617 8593 5.126067 TCATGCCTTAGTAGAAATCTTGCC 58.874 41.667 0.00 0.00 0.00 4.52
4647 8623 5.946972 TGGTAAAACTGTGTCTTCAGGAAAA 59.053 36.000 0.00 0.00 39.48 2.29
4738 8716 1.815003 ACTGCTACTTTCATGCTTGCC 59.185 47.619 0.00 0.00 0.00 4.52
4745 8723 4.202161 CGGTAGATCCACTGCTACTTTCAT 60.202 45.833 0.00 0.00 37.66 2.57
4774 8752 5.823570 TCATTTCTTTAACTGAACCCGACAA 59.176 36.000 0.00 0.00 0.00 3.18
4792 8770 5.886960 AACCAGTGATGCTACTTCATTTC 57.113 39.130 0.00 0.00 0.00 2.17
4804 8783 1.270550 GGGTCAAGCAAACCAGTGATG 59.729 52.381 0.00 0.00 38.62 3.07
4827 8806 6.260936 AGTTCACCTCCATTAATGCTAAATCG 59.739 38.462 10.11 0.00 0.00 3.34
4948 8927 8.684386 TTGATGTCTCATTTGTAAACCTTGTA 57.316 30.769 0.00 0.00 0.00 2.41
5035 9014 6.646240 GGTAATTAGACGCCAACCGAATAATA 59.354 38.462 0.00 0.00 41.02 0.98
5039 9018 3.118519 AGGTAATTAGACGCCAACCGAAT 60.119 43.478 0.00 0.00 41.02 3.34
5082 9298 4.094830 AGAAAAGGTTTGTCGGGTATGT 57.905 40.909 0.00 0.00 0.00 2.29
5100 9316 7.657354 CACATGTAGCAATAGCCTATGTTAGAA 59.343 37.037 0.00 0.00 43.56 2.10
5106 9322 5.299949 TGACACATGTAGCAATAGCCTATG 58.700 41.667 0.00 0.00 43.56 2.23
5107 9323 5.551305 TGACACATGTAGCAATAGCCTAT 57.449 39.130 0.00 0.00 43.56 2.57
5116 9332 4.582240 TGGTTTCAATTGACACATGTAGCA 59.418 37.500 22.62 10.07 0.00 3.49
5212 9428 6.849085 ATGTTTTGTACCAATATGCTTGGA 57.151 33.333 10.01 0.00 42.06 3.53
5344 9560 9.630098 CTGGCCAAATGAAATTGTATATACATC 57.370 33.333 16.16 11.40 36.10 3.06
5361 9577 2.171003 GTTAGGTTCAGCTGGCCAAAT 58.829 47.619 23.60 10.73 0.00 2.32
5424 9640 9.684448 TTTTATCTTTCAGTATATCAGCTCTCG 57.316 33.333 0.00 0.00 0.00 4.04
5446 9662 5.769662 ACTCTGAAGCAACATGTGGATTTTA 59.230 36.000 4.97 0.00 0.00 1.52
5462 9678 1.005340 GCTCCATCGCAACTCTGAAG 58.995 55.000 0.00 0.00 0.00 3.02
5466 9682 1.016130 CAACGCTCCATCGCAACTCT 61.016 55.000 0.00 0.00 0.00 3.24
5479 9695 1.995376 AGAACATTTTCCCCAACGCT 58.005 45.000 0.00 0.00 31.28 5.07
5481 9697 4.320935 CCACTAAGAACATTTTCCCCAACG 60.321 45.833 0.00 0.00 31.28 4.10
5641 9857 1.421646 CCTGGAGATACCCAATGACCC 59.578 57.143 0.00 0.00 35.47 4.46
5677 9893 4.334203 GGCGTGGTTTCAACACATCATATA 59.666 41.667 0.00 0.00 38.74 0.86
5740 9956 6.569179 TTTTGGAGGTGAACAAGTATAAGC 57.431 37.500 0.00 0.00 0.00 3.09
5754 9970 4.837093 TGAGAATACCGATTTTGGAGGT 57.163 40.909 0.00 0.00 41.73 3.85
5764 9980 5.545063 TGAGGCATAATTGAGAATACCGA 57.455 39.130 0.00 0.00 0.00 4.69
5819 10035 9.271828 CACATGCACTCATTACCATATTACTTA 57.728 33.333 0.00 0.00 0.00 2.24
5852 10068 8.723942 ATATAAATGCTTCGATCCAATCCTAC 57.276 34.615 0.00 0.00 0.00 3.18
5946 10162 8.341903 GCTTTTTATAACCAACAAAGCAAATGT 58.658 29.630 19.58 0.00 45.70 2.71
5952 10168 5.178623 GGTGGCTTTTTATAACCAACAAAGC 59.821 40.000 17.54 17.54 45.68 3.51
5989 10205 2.858745 ACGCTGGTTTAAGTGGTTGAT 58.141 42.857 0.00 0.00 31.74 2.57
5997 10213 3.340034 TGTATGGGAACGCTGGTTTAAG 58.660 45.455 0.00 0.00 36.24 1.85
6007 10223 3.313012 TTGACACTCTGTATGGGAACG 57.687 47.619 0.00 0.00 0.00 3.95
6065 10281 8.181904 TCAGAAAAGCATATTTATGGGGAATC 57.818 34.615 0.10 0.00 33.47 2.52
6090 10306 3.249799 TGACGACGCAATTGAGACAAATT 59.750 39.130 16.56 0.00 0.00 1.82
6192 10408 3.429543 CACAACCGAAGAAATGCAATTGG 59.570 43.478 7.72 0.00 36.10 3.16
6207 10423 5.227908 AGAACACTATGAACTACACAACCG 58.772 41.667 0.00 0.00 0.00 4.44
6212 10428 6.688578 TCTGGAAGAACACTATGAACTACAC 58.311 40.000 0.00 0.00 42.31 2.90
6235 10451 9.593134 AGACAACAAGTGTAATAGAGATCAATC 57.407 33.333 0.00 0.00 41.96 2.67
6239 10455 8.651588 CAACAGACAACAAGTGTAATAGAGATC 58.348 37.037 0.00 0.00 41.96 2.75
6242 10458 6.347725 GGCAACAGACAACAAGTGTAATAGAG 60.348 42.308 0.00 0.00 41.96 2.43
6244 10460 5.238432 TGGCAACAGACAACAAGTGTAATAG 59.762 40.000 0.00 0.00 46.17 1.73
6282 10498 7.587629 TGAGAGAAAATGCAATAGACAACAAG 58.412 34.615 0.00 0.00 0.00 3.16
6586 10802 5.678132 TTACTTTCTAGTTGCCGAAAACC 57.322 39.130 0.00 0.00 35.78 3.27
6592 10808 6.812160 ACTTAGTGATTACTTTCTAGTTGCCG 59.188 38.462 0.00 0.00 38.36 5.69
6707 10926 1.971695 CCTTGTTGAAGACCCCGCC 60.972 63.158 0.00 0.00 0.00 6.13
6793 11012 0.036010 TGGCTTCTTCTAGTGCTGGC 60.036 55.000 0.00 0.00 0.00 4.85
6806 11025 2.589014 CTTTGCGAAAGTGATGGCTTC 58.411 47.619 0.00 0.00 33.80 3.86
6820 11039 4.944962 TGATTCAAGATGGTACTTTGCG 57.055 40.909 0.00 0.00 0.00 4.85
6872 11091 0.037232 AGGGCACGTCTAACTTGCTC 60.037 55.000 8.22 4.63 43.37 4.26
6929 11148 7.342769 TGTACTCCGAGATGTAATGTATTGT 57.657 36.000 1.33 0.00 0.00 2.71
6978 11197 6.149474 GTCTAGCTTTGCAAACTCCAATAGAA 59.851 38.462 8.05 0.00 0.00 2.10
7085 11304 9.003658 AGACAATCAAAATGAGTCGAGTATTTT 57.996 29.630 0.00 4.04 35.14 1.82
7175 11394 5.629079 GAAAGTTCTTTCCACCACCTATG 57.371 43.478 12.61 0.00 0.00 2.23
7516 11735 5.715921 TGATCTCATAATCCCACCAGACTA 58.284 41.667 0.00 0.00 0.00 2.59
7570 11789 7.820648 AGGCAATATGTTTGTTGAAACTAGAG 58.179 34.615 0.00 0.00 41.87 2.43
7623 11842 4.437390 GCACATTTTCTATGGGAAGTGTCG 60.437 45.833 0.00 0.00 34.61 4.35
7717 11936 9.959749 CATGTTTGTAAGCTAGTTTTTAAAGGA 57.040 29.630 0.00 0.00 0.00 3.36
7718 11937 9.744468 ACATGTTTGTAAGCTAGTTTTTAAAGG 57.256 29.630 0.00 0.00 33.16 3.11
7882 12112 5.313712 TCACTCCCAAACTCCTTAATGTTC 58.686 41.667 0.00 0.00 0.00 3.18
8001 12231 9.520515 AGGTGAGAAATTAACAATATGACAGTT 57.479 29.630 0.00 0.00 0.00 3.16
8085 12315 0.396435 TCGGCTTGTGATTCTGGTGT 59.604 50.000 0.00 0.00 0.00 4.16
8148 12378 3.708563 AAACACACACATACTGTTGGC 57.291 42.857 0.00 0.00 0.00 4.52
8207 12437 1.003718 AAACCAGCTACCCACTCGC 60.004 57.895 0.00 0.00 0.00 5.03
8260 12490 1.935873 AGCGATGTCATTCATGAACCG 59.064 47.619 11.07 5.30 38.75 4.44
8347 12577 9.935241 ACATTAATATTGTTATGTTTTGCCACA 57.065 25.926 0.00 0.00 0.00 4.17
8595 12825 7.896383 TGGTTGCTGCTAGGATTAAATATTT 57.104 32.000 5.89 5.89 0.00 1.40
8612 12842 1.000019 ATGCCTGCTGATGGTTGCT 60.000 52.632 0.00 0.00 0.00 3.91
8641 12871 9.687210 CTGCGTATAGTTACATATGGAGTAAAA 57.313 33.333 7.80 0.00 33.49 1.52
8643 12873 7.310664 GCTGCGTATAGTTACATATGGAGTAA 58.689 38.462 7.80 0.00 37.85 2.24
8646 12876 4.793731 CGCTGCGTATAGTTACATATGGAG 59.206 45.833 14.93 9.38 38.31 3.86
8648 12878 4.323602 CACGCTGCGTATAGTTACATATGG 59.676 45.833 28.47 6.18 38.32 2.74
8649 12879 4.323602 CCACGCTGCGTATAGTTACATATG 59.676 45.833 28.47 10.26 38.32 1.78
8650 12880 4.216902 TCCACGCTGCGTATAGTTACATAT 59.783 41.667 28.47 0.00 38.32 1.78
8651 12881 3.565063 TCCACGCTGCGTATAGTTACATA 59.435 43.478 28.47 0.00 38.32 2.29
8652 12882 2.359848 TCCACGCTGCGTATAGTTACAT 59.640 45.455 28.47 0.00 38.32 2.29
8653 12883 1.744522 TCCACGCTGCGTATAGTTACA 59.255 47.619 28.47 2.61 38.32 2.41
8654 12884 2.480224 TCCACGCTGCGTATAGTTAC 57.520 50.000 28.47 0.00 38.32 2.50
8655 12885 2.684374 TCTTCCACGCTGCGTATAGTTA 59.316 45.455 28.47 9.15 38.32 2.24
8826 13056 1.745115 GATAACCCGCTGCACTGCA 60.745 57.895 3.11 3.11 36.92 4.41
8937 13167 0.255890 AGATGGGAATGGGGTTGACG 59.744 55.000 0.00 0.00 0.00 4.35
9000 13230 3.207474 GCAGATTGGTGCTTGTTACAG 57.793 47.619 0.00 0.00 40.54 2.74
9010 13240 5.634859 GTGTTTATTGGAAAGCAGATTGGTG 59.365 40.000 0.00 0.00 0.00 4.17
9113 13343 7.201410 CCAACACTAAGATAACACACGTACATC 60.201 40.741 0.00 0.00 0.00 3.06
9239 13469 7.357303 AGTCACAAAACATAATTCGTGGTTAC 58.643 34.615 0.00 0.00 0.00 2.50
9243 13473 6.021596 GCTAGTCACAAAACATAATTCGTGG 58.978 40.000 0.00 0.00 0.00 4.94
9294 13524 4.168014 CCCATGAATCATTTGTCACGTTG 58.832 43.478 0.00 0.00 0.00 4.10
9339 13569 4.161565 TGGACACGCCTAAGAGAAATACAT 59.838 41.667 0.00 0.00 37.63 2.29
9340 13570 3.512329 TGGACACGCCTAAGAGAAATACA 59.488 43.478 0.00 0.00 37.63 2.29
9346 13576 1.405526 GCATTGGACACGCCTAAGAGA 60.406 52.381 0.00 0.00 37.63 3.10
9356 13586 5.048782 TGTCAATTTCACTAGCATTGGACAC 60.049 40.000 0.00 0.00 0.00 3.67
9378 13608 6.203072 AGAGGGAGTATTTGGTACTACATGT 58.797 40.000 2.69 2.69 44.78 3.21
9429 13659 7.996644 AGGTAATTTCCAAAGTGTGACTTTAGA 59.003 33.333 3.73 0.00 45.84 2.10
9529 13800 7.826260 ACTTTGTAAACTTTGACCATGTTTG 57.174 32.000 0.00 0.00 35.77 2.93
9534 13805 6.317893 AGTCGAACTTTGTAAACTTTGACCAT 59.682 34.615 10.74 0.00 31.18 3.55
9537 13808 9.207042 CTAAAGTCGAACTTTGTAAACTTTGAC 57.793 33.333 17.66 8.10 46.83 3.18
9590 13861 2.213310 TCATATCCCCTCCTTGCCAAA 58.787 47.619 0.00 0.00 0.00 3.28
9616 13887 9.495572 AAAAGTCAACCTTTGTAAATTTGACAA 57.504 25.926 21.58 5.22 45.57 3.18
9617 13888 9.495572 AAAAAGTCAACCTTTGTAAATTTGACA 57.504 25.926 21.58 0.00 45.57 3.58
9618 13889 9.967245 GAAAAAGTCAACCTTTGTAAATTTGAC 57.033 29.630 16.53 16.53 42.62 3.18
9687 13961 6.533367 TGTGCAAGTTTAGAAAATGTTCCAAC 59.467 34.615 0.00 0.00 33.92 3.77
9843 14118 9.349713 GTCACAGGGGAATATTACATGAAATTA 57.650 33.333 0.00 0.00 0.00 1.40
9844 14119 7.838696 TGTCACAGGGGAATATTACATGAAATT 59.161 33.333 0.00 0.00 0.00 1.82
9845 14120 7.353525 TGTCACAGGGGAATATTACATGAAAT 58.646 34.615 0.00 0.00 0.00 2.17
9907 14182 2.579410 ATGGAGCAAACCCGTAACTT 57.421 45.000 0.00 0.00 0.00 2.66
9911 14186 0.988832 AGGAATGGAGCAAACCCGTA 59.011 50.000 0.00 0.00 0.00 4.02
9912 14187 0.988832 TAGGAATGGAGCAAACCCGT 59.011 50.000 0.00 0.00 0.00 5.28
9936 14211 1.004927 GTTTCTGTGTCGCGCATATCC 60.005 52.381 8.75 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.