Multiple sequence alignment - TraesCS7D01G463000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G463000 chr7D 100.000 3215 0 0 1 3215 578180047 578176833 0.000000e+00 5938.0
1 TraesCS7D01G463000 chr7D 83.784 111 11 4 2397 2505 578177517 578177412 7.340000e-17 99.0
2 TraesCS7D01G463000 chr7D 83.784 111 11 4 2531 2636 578177651 578177543 7.340000e-17 99.0
3 TraesCS7D01G463000 chr7D 84.615 65 2 1 301 365 578179687 578179631 1.250000e-04 58.4
4 TraesCS7D01G463000 chr7D 84.615 65 2 1 361 417 578179747 578179683 1.250000e-04 58.4
5 TraesCS7D01G463000 chr7A 92.541 1649 74 10 745 2365 670376558 670374931 0.000000e+00 2318.0
6 TraesCS7D01G463000 chr7A 95.773 757 24 3 1 749 670377396 670376640 0.000000e+00 1214.0
7 TraesCS7D01G463000 chr7A 86.170 470 33 9 2758 3197 662539227 662538760 2.240000e-131 479.0
8 TraesCS7D01G463000 chr7A 97.455 275 4 2 2363 2636 670353057 670352785 1.750000e-127 466.0
9 TraesCS7D01G463000 chr7A 92.667 150 9 2 2632 2779 662539418 662539269 6.990000e-52 215.0
10 TraesCS7D01G463000 chr7A 85.088 114 11 3 2397 2508 670352891 670352782 9.430000e-21 111.0
11 TraesCS7D01G463000 chr7A 85.586 111 7 4 2531 2636 670353023 670352917 1.220000e-19 108.0
12 TraesCS7D01G463000 chr7A 86.154 65 1 1 361 417 670377092 670377028 2.680000e-06 63.9
13 TraesCS7D01G463000 chr7A 84.615 65 2 1 301 365 670377032 670376976 1.250000e-04 58.4
14 TraesCS7D01G463000 chrUn 98.687 457 6 0 2758 3214 260708436 260708892 0.000000e+00 811.0
15 TraesCS7D01G463000 chrUn 94.928 138 7 0 2634 2771 260708246 260708383 1.940000e-52 217.0
16 TraesCS7D01G463000 chr6D 98.472 458 7 0 2758 3215 55140005 55140462 0.000000e+00 808.0
17 TraesCS7D01G463000 chr6D 87.563 394 26 6 2842 3215 7270684 7271074 4.930000e-118 435.0
18 TraesCS7D01G463000 chr6D 95.652 138 6 0 2634 2771 55139815 55139952 4.170000e-54 222.0
19 TraesCS7D01G463000 chr6D 93.525 139 9 0 2633 2771 7270446 7270584 1.170000e-49 207.0
20 TraesCS7D01G463000 chr3D 97.598 458 6 2 2758 3215 603822031 603821579 0.000000e+00 780.0
21 TraesCS7D01G463000 chr3D 93.919 148 7 2 2634 2779 603822221 603822074 4.170000e-54 222.0
22 TraesCS7D01G463000 chr1B 93.460 474 12 2 2758 3215 3509269 3508799 0.000000e+00 686.0
23 TraesCS7D01G463000 chr1B 93.038 474 14 2 2758 3215 3443411 3442941 0.000000e+00 675.0
24 TraesCS7D01G463000 chr1B 85.451 488 38 11 2758 3215 16097702 16097218 8.070000e-131 477.0
25 TraesCS7D01G463000 chr1B 85.246 488 39 7 2758 3215 16065568 16065084 3.750000e-129 472.0
26 TraesCS7D01G463000 chr1B 91.275 149 10 2 2633 2779 3509459 3509312 1.960000e-47 200.0
27 TraesCS7D01G463000 chr4A 91.367 417 26 6 2806 3215 598465751 598466164 2.170000e-156 562.0
28 TraesCS7D01G463000 chr4A 94.776 134 7 0 2634 2767 598465187 598465320 3.250000e-50 209.0
29 TraesCS7D01G463000 chr2D 86.066 488 36 9 2758 3215 647305979 647306464 2.230000e-136 496.0
30 TraesCS7D01G463000 chr2D 90.132 152 13 2 2628 2777 399965796 399965645 2.530000e-46 196.0
31 TraesCS7D01G463000 chr7B 87.436 390 27 11 2758 3129 126386536 126386921 2.290000e-116 429.0
32 TraesCS7D01G463000 chr6B 90.667 150 12 1 2632 2779 616707533 616707384 7.040000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G463000 chr7D 578176833 578180047 3214 True 1250.560 5938 87.35960 1 3215 5 chr7D.!!$R1 3214
1 TraesCS7D01G463000 chr7A 670374931 670377396 2465 True 913.575 2318 89.77075 1 2365 4 chr7A.!!$R3 2364
2 TraesCS7D01G463000 chr7A 662538760 662539418 658 True 347.000 479 89.41850 2632 3197 2 chr7A.!!$R1 565
3 TraesCS7D01G463000 chrUn 260708246 260708892 646 False 514.000 811 96.80750 2634 3214 2 chrUn.!!$F1 580
4 TraesCS7D01G463000 chr6D 55139815 55140462 647 False 515.000 808 97.06200 2634 3215 2 chr6D.!!$F2 581
5 TraesCS7D01G463000 chr6D 7270446 7271074 628 False 321.000 435 90.54400 2633 3215 2 chr6D.!!$F1 582
6 TraesCS7D01G463000 chr3D 603821579 603822221 642 True 501.000 780 95.75850 2634 3215 2 chr3D.!!$R1 581
7 TraesCS7D01G463000 chr1B 3508799 3509459 660 True 443.000 686 92.36750 2633 3215 2 chr1B.!!$R4 582
8 TraesCS7D01G463000 chr4A 598465187 598466164 977 False 385.500 562 93.07150 2634 3215 2 chr4A.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
665 670 1.067250 TTTGCTCCTGGCGTTTTGC 59.933 52.632 0.0 0.0 45.43 3.68 F
1194 1303 0.179205 CCGTCGACTACTTCACGGAC 60.179 60.000 14.7 0.0 44.84 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 1834 0.040351 CCACCTCCCACTCTCTCTCA 59.960 60.0 0.00 0.0 0.00 3.27 R
2386 2509 0.108898 AAGCGCAAGTTGCAACAACA 60.109 45.0 30.11 0.0 45.36 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 6.098409 GGGAACATGGTCTAGATCACTAAGAA 59.902 42.308 8.14 0.00 0.00 2.52
204 205 2.102925 GGAGCTGGAAAGAGGAGATCAG 59.897 54.545 0.00 0.00 0.00 2.90
294 299 4.508662 AGAAGCTACTATTTCACCAGCAC 58.491 43.478 0.00 0.00 34.65 4.40
350 355 4.399303 GGCAATTTGTTACTCTAGCCACAT 59.601 41.667 0.00 0.00 40.50 3.21
428 433 9.988350 CGTATCATAGTTTTGAGCAATTTACTT 57.012 29.630 0.00 0.00 0.00 2.24
464 469 9.601217 AGATGCTTATCGACAACTAAGTTATTT 57.399 29.630 5.63 0.00 0.00 1.40
548 553 7.039363 ACAAGCATCTCTACTCTTGTCTTAGTT 60.039 37.037 0.00 0.00 43.80 2.24
554 559 9.914834 ATCTCTACTCTTGTCTTAGTTGTCTAT 57.085 33.333 0.00 0.00 0.00 1.98
583 588 3.901844 TGTAGCTAATATGGGTGTCCCTC 59.098 47.826 0.00 0.00 45.70 4.30
589 594 2.265890 TATGGGTGTCCCTCCCCCTC 62.266 65.000 6.38 0.00 45.70 4.30
620 625 4.048504 GCGTTTTCTACAAAAATGCCACT 58.951 39.130 13.76 0.00 42.97 4.00
624 629 4.481930 TTCTACAAAAATGCCACTCACG 57.518 40.909 0.00 0.00 0.00 4.35
653 658 2.941428 CCGTTGGGTAATTGTTTGCTC 58.059 47.619 0.00 0.00 0.00 4.26
665 670 1.067250 TTTGCTCCTGGCGTTTTGC 59.933 52.632 0.00 0.00 45.43 3.68
680 689 3.648982 TGCGGCTGTGCAACGAAG 61.649 61.111 0.00 0.00 43.02 3.79
706 715 4.576463 AGATAAATTGGACGGTCAAGATGC 59.424 41.667 10.76 0.00 0.00 3.91
717 726 2.094417 GGTCAAGATGCGCTGTTAACTC 59.906 50.000 9.73 0.00 0.00 3.01
761 856 7.754027 AGATTTACAAGTACGTAACTAGCACAG 59.246 37.037 0.00 0.00 37.50 3.66
762 857 3.572584 ACAAGTACGTAACTAGCACAGC 58.427 45.455 0.00 0.00 37.50 4.40
776 871 6.595682 ACTAGCACAGCAGTAAATGGATTAT 58.404 36.000 0.00 0.00 0.00 1.28
854 949 2.697761 CGTTCGAGAGGCTTCCGGA 61.698 63.158 0.00 0.00 0.00 5.14
865 972 1.599047 CTTCCGGATGTGTCTGCCT 59.401 57.895 4.15 0.00 0.00 4.75
869 976 2.265739 GGATGTGTCTGCCTGCGA 59.734 61.111 0.00 0.00 0.00 5.10
892 999 5.373222 AGGGCTATTGTGTAAAATCGCATA 58.627 37.500 0.00 0.00 31.63 3.14
895 1002 5.008217 GGCTATTGTGTAAAATCGCATACCA 59.992 40.000 0.00 0.00 31.63 3.25
1005 1114 2.753966 CCTGCTTCAACCGATGGCG 61.754 63.158 0.00 0.00 37.24 5.69
1015 1124 4.612536 CGATGGCGGCGCAATTCC 62.613 66.667 34.36 15.93 0.00 3.01
1182 1291 4.773117 GAGGTCACGGCCGTCGAC 62.773 72.222 33.85 33.85 42.43 4.20
1191 1300 1.513586 GGCCGTCGACTACTTCACG 60.514 63.158 14.70 0.00 0.00 4.35
1194 1303 0.179205 CCGTCGACTACTTCACGGAC 60.179 60.000 14.70 0.00 44.84 4.79
1227 1336 4.899239 GCCCGGATCACGCTCCTG 62.899 72.222 0.73 0.00 42.52 3.86
1228 1337 4.899239 CCCGGATCACGCTCCTGC 62.899 72.222 0.73 0.00 42.52 4.85
1229 1338 4.899239 CCGGATCACGCTCCTGCC 62.899 72.222 0.00 0.00 42.52 4.85
1230 1339 3.842923 CGGATCACGCTCCTGCCT 61.843 66.667 0.00 0.00 34.82 4.75
1231 1340 2.107953 GGATCACGCTCCTGCCTC 59.892 66.667 0.00 0.00 35.36 4.70
1232 1341 2.279120 GATCACGCTCCTGCCTCG 60.279 66.667 0.00 0.00 35.36 4.63
1233 1342 4.521062 ATCACGCTCCTGCCTCGC 62.521 66.667 0.00 0.00 35.36 5.03
1290 1399 2.626780 GCCGGGCAGGTTTGTCTTC 61.627 63.158 15.62 0.00 43.70 2.87
1301 1410 1.871039 GTTTGTCTTCTACGCCAAGCA 59.129 47.619 0.00 0.00 0.00 3.91
1307 1416 2.758423 TCTTCTACGCCAAGCAGATACA 59.242 45.455 0.00 0.00 0.00 2.29
1313 1422 1.099879 GCCAAGCAGATACAGCAGGG 61.100 60.000 0.00 0.00 32.27 4.45
1317 1426 1.884926 GCAGATACAGCAGGGCGAC 60.885 63.158 0.00 0.00 0.00 5.19
1318 1427 1.819229 CAGATACAGCAGGGCGACT 59.181 57.895 0.00 0.00 0.00 4.18
1333 1442 1.679032 GCGACTGGCAAAGGTCCTATT 60.679 52.381 0.00 0.00 42.87 1.73
1338 1447 4.479158 ACTGGCAAAGGTCCTATTTTCAA 58.521 39.130 0.00 0.00 0.00 2.69
1444 1553 4.377370 CGTGGAACATGGAGCACA 57.623 55.556 0.00 0.00 44.52 4.57
1477 1586 1.006102 ACGCGTTCTCTGTCAAGGG 60.006 57.895 5.58 0.00 0.00 3.95
1483 1592 0.687354 TTCTCTGTCAAGGGACTGGC 59.313 55.000 0.00 0.00 44.61 4.85
1486 1595 1.002868 CTGTCAAGGGACTGGCAGG 60.003 63.158 20.34 0.00 44.61 4.85
1496 1605 0.321919 GACTGGCAGGATCTTGTGCA 60.322 55.000 20.34 0.00 41.75 4.57
1512 1621 0.249868 TGCACGAGAAGGGTGTCAAG 60.250 55.000 0.00 0.00 37.70 3.02
1566 1675 3.296054 GGCCGGATCCTCGTCGAT 61.296 66.667 5.05 0.00 0.00 3.59
1645 1754 3.801997 AGCTGGCCATCGAAGGGG 61.802 66.667 5.51 2.70 0.00 4.79
1652 1761 4.489771 CATCGAAGGGGGCGCCTT 62.490 66.667 33.16 33.16 0.00 4.35
1695 1804 2.889018 GGCGGGGAATCGTTCGTC 60.889 66.667 0.00 0.00 0.00 4.20
1725 1834 2.360852 GTGGTGGATGCTGCTGCT 60.361 61.111 17.00 2.26 40.48 4.24
1734 1843 0.462375 ATGCTGCTGCTGAGAGAGAG 59.538 55.000 17.00 0.00 40.48 3.20
1748 1857 0.543174 AGAGAGTGGGAGGTGGACAC 60.543 60.000 0.00 0.00 35.43 3.67
1861 1970 1.216175 TCGTACCAGGGGCTACTACAT 59.784 52.381 0.00 0.00 0.00 2.29
1879 1988 1.680522 ATGGCGCAGTCTCCAGGTAG 61.681 60.000 10.83 0.00 35.57 3.18
1882 1991 2.351244 CGCAGTCTCCAGGTAGCCA 61.351 63.158 0.00 0.00 0.00 4.75
1909 2018 6.595716 CGTAATTCCTTGTCAGAAATCCTCTT 59.404 38.462 0.00 0.00 29.07 2.85
1966 2077 1.356624 GCTGCTGTTGCGACTGTTT 59.643 52.632 12.11 0.00 43.34 2.83
2017 2128 4.460263 TGCCACTACATTTGTCTTTGTCT 58.540 39.130 0.00 0.00 0.00 3.41
2053 2164 1.596934 GACGGCTCCACATCCTCAA 59.403 57.895 0.00 0.00 0.00 3.02
2079 2199 1.268743 GCTGTCAACAAGTGGCAAGTC 60.269 52.381 0.00 0.00 42.62 3.01
2088 2208 2.027625 GTGGCAAGTCGAACCCGAG 61.028 63.158 0.00 0.00 46.52 4.63
2093 2213 0.669625 CAAGTCGAACCCGAGGGAAC 60.670 60.000 16.26 7.18 46.52 3.62
2122 2242 1.607756 AAGAGACGCAGGCTCTCCA 60.608 57.895 13.22 0.00 41.66 3.86
2124 2244 1.153667 GAGACGCAGGCTCTCCAAG 60.154 63.158 4.42 0.00 33.74 3.61
2155 2275 0.392461 GGTAGCATCGACAGCCCAAA 60.392 55.000 7.97 0.00 0.00 3.28
2156 2276 1.009829 GTAGCATCGACAGCCCAAAG 58.990 55.000 7.97 0.00 0.00 2.77
2161 2281 0.539051 ATCGACAGCCCAAAGAGGAG 59.461 55.000 0.00 0.00 41.22 3.69
2177 2297 1.032014 GGAGTCAAGCTGTTTGGCAA 58.968 50.000 11.36 0.00 43.96 4.52
2207 2330 1.601171 CAGAGGGAAGTGGCTCCAG 59.399 63.158 0.00 0.00 37.20 3.86
2301 2424 9.814899 CTCTTCAGACTAGTTTGTCATATCATT 57.185 33.333 12.73 0.00 39.27 2.57
2358 2481 1.079127 CTTGAGTACCTGTGGCCCG 60.079 63.158 0.00 0.00 0.00 6.13
2365 2488 1.002315 GTACCTGTGGCCCGAAACTTA 59.998 52.381 0.00 0.00 0.00 2.24
2366 2489 0.696501 ACCTGTGGCCCGAAACTTAT 59.303 50.000 0.00 0.00 0.00 1.73
2367 2490 1.074889 ACCTGTGGCCCGAAACTTATT 59.925 47.619 0.00 0.00 0.00 1.40
2368 2491 2.167662 CCTGTGGCCCGAAACTTATTT 58.832 47.619 0.00 0.00 0.00 1.40
2369 2492 2.094752 CCTGTGGCCCGAAACTTATTTG 60.095 50.000 0.00 0.00 0.00 2.32
2370 2493 1.271102 TGTGGCCCGAAACTTATTTGC 59.729 47.619 0.00 0.00 0.00 3.68
2371 2494 1.544246 GTGGCCCGAAACTTATTTGCT 59.456 47.619 0.00 0.00 0.00 3.91
2372 2495 2.029380 GTGGCCCGAAACTTATTTGCTT 60.029 45.455 0.00 0.00 0.00 3.91
2373 2496 2.029470 TGGCCCGAAACTTATTTGCTTG 60.029 45.455 0.00 0.00 0.00 4.01
2374 2497 1.992667 GCCCGAAACTTATTTGCTTGC 59.007 47.619 0.00 0.00 0.00 4.01
2375 2498 2.250188 CCCGAAACTTATTTGCTTGCG 58.750 47.619 0.00 0.00 0.00 4.85
2376 2499 2.351350 CCCGAAACTTATTTGCTTGCGT 60.351 45.455 0.00 0.00 0.00 5.24
2377 2500 3.305110 CCGAAACTTATTTGCTTGCGTT 58.695 40.909 0.00 0.00 0.00 4.84
2378 2501 3.119463 CCGAAACTTATTTGCTTGCGTTG 59.881 43.478 0.00 0.00 0.00 4.10
2379 2502 3.971871 CGAAACTTATTTGCTTGCGTTGA 59.028 39.130 0.00 0.00 0.00 3.18
2380 2503 4.143824 CGAAACTTATTTGCTTGCGTTGAC 60.144 41.667 0.00 0.00 0.00 3.18
2381 2504 3.980646 ACTTATTTGCTTGCGTTGACA 57.019 38.095 0.00 0.00 0.00 3.58
2382 2505 4.503741 ACTTATTTGCTTGCGTTGACAT 57.496 36.364 0.00 0.00 0.00 3.06
2383 2506 4.475944 ACTTATTTGCTTGCGTTGACATC 58.524 39.130 0.00 0.00 0.00 3.06
2384 2507 1.967762 ATTTGCTTGCGTTGACATCG 58.032 45.000 1.47 1.47 0.00 3.84
2393 2516 1.662360 CGTTGACATCGCTGTTGTTG 58.338 50.000 0.00 0.00 35.14 3.33
2394 2517 1.398595 GTTGACATCGCTGTTGTTGC 58.601 50.000 0.00 0.00 35.14 4.17
2395 2518 1.020437 TTGACATCGCTGTTGTTGCA 58.980 45.000 0.00 0.00 35.14 4.08
2396 2519 1.020437 TGACATCGCTGTTGTTGCAA 58.980 45.000 0.00 0.00 35.14 4.08
2397 2520 1.268488 TGACATCGCTGTTGTTGCAAC 60.268 47.619 22.83 22.83 35.14 4.17
2398 2521 1.002468 GACATCGCTGTTGTTGCAACT 60.002 47.619 28.61 5.75 35.14 3.16
2399 2522 1.405105 ACATCGCTGTTGTTGCAACTT 59.595 42.857 28.61 2.71 28.70 2.66
2400 2523 1.782569 CATCGCTGTTGTTGCAACTTG 59.217 47.619 28.61 16.58 0.00 3.16
2401 2524 0.525242 TCGCTGTTGTTGCAACTTGC 60.525 50.000 28.61 22.93 45.29 4.01
2415 2538 5.761818 GCAACTTGCGCTTTTACAATTAT 57.238 34.783 9.73 0.00 31.71 1.28
2416 2539 6.151975 GCAACTTGCGCTTTTACAATTATT 57.848 33.333 9.73 0.00 31.71 1.40
2417 2540 6.589454 GCAACTTGCGCTTTTACAATTATTT 58.411 32.000 9.73 0.00 31.71 1.40
2418 2541 7.068955 GCAACTTGCGCTTTTACAATTATTTT 58.931 30.769 9.73 0.00 31.71 1.82
2419 2542 7.266125 GCAACTTGCGCTTTTACAATTATTTTC 59.734 33.333 9.73 0.00 31.71 2.29
2420 2543 8.487176 CAACTTGCGCTTTTACAATTATTTTCT 58.513 29.630 9.73 0.00 0.00 2.52
2421 2544 9.685828 AACTTGCGCTTTTACAATTATTTTCTA 57.314 25.926 9.73 0.00 0.00 2.10
2422 2545 9.124807 ACTTGCGCTTTTACAATTATTTTCTAC 57.875 29.630 9.73 0.00 0.00 2.59
2423 2546 9.341899 CTTGCGCTTTTACAATTATTTTCTACT 57.658 29.630 9.73 0.00 0.00 2.57
2424 2547 9.685828 TTGCGCTTTTACAATTATTTTCTACTT 57.314 25.926 9.73 0.00 0.00 2.24
2425 2548 9.337091 TGCGCTTTTACAATTATTTTCTACTTC 57.663 29.630 9.73 0.00 0.00 3.01
2426 2549 9.337091 GCGCTTTTACAATTATTTTCTACTTCA 57.663 29.630 0.00 0.00 0.00 3.02
2434 2557 9.193806 ACAATTATTTTCTACTTCATGGCATCT 57.806 29.630 0.00 0.00 0.00 2.90
2440 2563 9.860898 ATTTTCTACTTCATGGCATCTTTTTAC 57.139 29.630 0.00 0.00 0.00 2.01
2441 2564 7.391148 TTCTACTTCATGGCATCTTTTTACC 57.609 36.000 0.00 0.00 0.00 2.85
2442 2565 6.721318 TCTACTTCATGGCATCTTTTTACCT 58.279 36.000 0.00 0.00 0.00 3.08
2443 2566 5.649782 ACTTCATGGCATCTTTTTACCTG 57.350 39.130 0.00 0.00 0.00 4.00
2444 2567 4.463891 ACTTCATGGCATCTTTTTACCTGG 59.536 41.667 0.00 0.00 0.00 4.45
2445 2568 4.046286 TCATGGCATCTTTTTACCTGGT 57.954 40.909 4.05 4.05 0.00 4.00
2446 2569 4.415596 TCATGGCATCTTTTTACCTGGTT 58.584 39.130 3.84 0.00 0.00 3.67
2447 2570 4.220382 TCATGGCATCTTTTTACCTGGTTG 59.780 41.667 3.84 0.00 0.00 3.77
2448 2571 3.571590 TGGCATCTTTTTACCTGGTTGT 58.428 40.909 3.84 0.00 0.00 3.32
2449 2572 3.572255 TGGCATCTTTTTACCTGGTTGTC 59.428 43.478 3.84 0.00 0.00 3.18
2450 2573 3.826729 GGCATCTTTTTACCTGGTTGTCT 59.173 43.478 3.84 0.00 0.00 3.41
2451 2574 4.321230 GGCATCTTTTTACCTGGTTGTCTG 60.321 45.833 3.84 0.00 0.00 3.51
2452 2575 4.278419 GCATCTTTTTACCTGGTTGTCTGT 59.722 41.667 3.84 0.00 0.00 3.41
2453 2576 5.762045 CATCTTTTTACCTGGTTGTCTGTG 58.238 41.667 3.84 0.00 0.00 3.66
2454 2577 4.850680 TCTTTTTACCTGGTTGTCTGTGT 58.149 39.130 3.84 0.00 0.00 3.72
2455 2578 5.991861 TCTTTTTACCTGGTTGTCTGTGTA 58.008 37.500 3.84 0.00 0.00 2.90
2456 2579 6.597562 TCTTTTTACCTGGTTGTCTGTGTAT 58.402 36.000 3.84 0.00 0.00 2.29
2457 2580 6.485313 TCTTTTTACCTGGTTGTCTGTGTATG 59.515 38.462 3.84 0.00 0.00 2.39
2458 2581 2.185004 ACCTGGTTGTCTGTGTATGC 57.815 50.000 0.00 0.00 0.00 3.14
2459 2582 1.271379 ACCTGGTTGTCTGTGTATGCC 60.271 52.381 0.00 0.00 0.00 4.40
2460 2583 1.271325 CCTGGTTGTCTGTGTATGCCA 60.271 52.381 0.00 0.00 0.00 4.92
2461 2584 2.079158 CTGGTTGTCTGTGTATGCCAG 58.921 52.381 0.00 0.00 36.49 4.85
2462 2585 1.696884 TGGTTGTCTGTGTATGCCAGA 59.303 47.619 0.00 0.00 36.63 3.86
2471 2594 6.741992 TCTGTGTATGCCAGACTTTATTTG 57.258 37.500 0.00 0.00 34.12 2.32
2472 2595 5.123820 TCTGTGTATGCCAGACTTTATTTGC 59.876 40.000 0.00 0.00 34.12 3.68
2473 2596 4.764308 TGTGTATGCCAGACTTTATTTGCA 59.236 37.500 0.00 0.00 0.00 4.08
2474 2597 5.418524 TGTGTATGCCAGACTTTATTTGCAT 59.581 36.000 0.00 0.00 41.79 3.96
2475 2598 5.745294 GTGTATGCCAGACTTTATTTGCATG 59.255 40.000 5.14 0.00 39.55 4.06
2476 2599 5.651576 TGTATGCCAGACTTTATTTGCATGA 59.348 36.000 0.00 0.00 39.55 3.07
2477 2600 5.664294 ATGCCAGACTTTATTTGCATGAA 57.336 34.783 0.00 0.00 37.98 2.57
2478 2601 5.465532 TGCCAGACTTTATTTGCATGAAA 57.534 34.783 0.00 0.00 0.00 2.69
2479 2602 5.851720 TGCCAGACTTTATTTGCATGAAAA 58.148 33.333 0.07 0.07 0.00 2.29
2480 2603 6.286758 TGCCAGACTTTATTTGCATGAAAAA 58.713 32.000 2.14 0.00 0.00 1.94
2504 2627 6.456795 AAAATTCTAGCTCCCTAAATGCAC 57.543 37.500 0.00 0.00 0.00 4.57
2505 2628 3.560636 TTCTAGCTCCCTAAATGCACC 57.439 47.619 0.00 0.00 0.00 5.01
2506 2629 1.768870 TCTAGCTCCCTAAATGCACCC 59.231 52.381 0.00 0.00 0.00 4.61
2507 2630 1.490490 CTAGCTCCCTAAATGCACCCA 59.510 52.381 0.00 0.00 0.00 4.51
2508 2631 0.257039 AGCTCCCTAAATGCACCCAG 59.743 55.000 0.00 0.00 0.00 4.45
2509 2632 1.387295 GCTCCCTAAATGCACCCAGC 61.387 60.000 0.00 0.00 45.96 4.85
2510 2633 0.753111 CTCCCTAAATGCACCCAGCC 60.753 60.000 0.00 0.00 44.83 4.85
2511 2634 1.000233 CCCTAAATGCACCCAGCCA 60.000 57.895 0.00 0.00 44.83 4.75
2512 2635 0.397535 CCCTAAATGCACCCAGCCAT 60.398 55.000 0.00 0.00 44.83 4.40
2513 2636 0.748450 CCTAAATGCACCCAGCCATG 59.252 55.000 0.00 0.00 44.83 3.66
2514 2637 1.477553 CTAAATGCACCCAGCCATGT 58.522 50.000 0.00 0.00 44.83 3.21
2515 2638 1.826720 CTAAATGCACCCAGCCATGTT 59.173 47.619 0.00 0.00 44.83 2.71
2516 2639 0.609662 AAATGCACCCAGCCATGTTC 59.390 50.000 0.00 0.00 44.83 3.18
2517 2640 0.251922 AATGCACCCAGCCATGTTCT 60.252 50.000 0.00 0.00 44.83 3.01
2518 2641 0.968901 ATGCACCCAGCCATGTTCTG 60.969 55.000 0.00 5.50 44.83 3.02
2519 2642 1.303561 GCACCCAGCCATGTTCTGA 60.304 57.895 12.27 0.00 37.23 3.27
2520 2643 0.895100 GCACCCAGCCATGTTCTGAA 60.895 55.000 12.27 0.00 37.23 3.02
2521 2644 1.843368 CACCCAGCCATGTTCTGAAT 58.157 50.000 12.27 0.02 33.54 2.57
2522 2645 2.173519 CACCCAGCCATGTTCTGAATT 58.826 47.619 12.27 0.00 33.54 2.17
2523 2646 2.564062 CACCCAGCCATGTTCTGAATTT 59.436 45.455 12.27 0.00 33.54 1.82
2524 2647 2.827921 ACCCAGCCATGTTCTGAATTTC 59.172 45.455 12.27 0.00 33.54 2.17
2525 2648 3.094572 CCCAGCCATGTTCTGAATTTCT 58.905 45.455 12.27 0.00 33.54 2.52
2526 2649 3.512724 CCCAGCCATGTTCTGAATTTCTT 59.487 43.478 12.27 0.00 33.54 2.52
2527 2650 4.706476 CCCAGCCATGTTCTGAATTTCTTA 59.294 41.667 12.27 0.00 33.54 2.10
2528 2651 5.361857 CCCAGCCATGTTCTGAATTTCTTAT 59.638 40.000 12.27 0.00 33.54 1.73
2529 2652 6.270815 CCAGCCATGTTCTGAATTTCTTATG 58.729 40.000 12.27 0.00 33.54 1.90
2530 2653 6.095860 CCAGCCATGTTCTGAATTTCTTATGA 59.904 38.462 12.27 0.00 33.54 2.15
2531 2654 6.971184 CAGCCATGTTCTGAATTTCTTATGAC 59.029 38.462 6.40 0.00 33.54 3.06
2532 2655 6.888632 AGCCATGTTCTGAATTTCTTATGACT 59.111 34.615 0.00 0.00 0.00 3.41
2533 2656 7.395489 AGCCATGTTCTGAATTTCTTATGACTT 59.605 33.333 0.00 0.00 0.00 3.01
2534 2657 7.487189 GCCATGTTCTGAATTTCTTATGACTTG 59.513 37.037 0.00 0.10 0.00 3.16
2535 2658 7.487189 CCATGTTCTGAATTTCTTATGACTTGC 59.513 37.037 0.00 0.00 0.00 4.01
2536 2659 6.602179 TGTTCTGAATTTCTTATGACTTGCG 58.398 36.000 0.00 0.00 0.00 4.85
2537 2660 5.221891 TCTGAATTTCTTATGACTTGCGC 57.778 39.130 0.00 0.00 0.00 6.09
2538 2661 4.937620 TCTGAATTTCTTATGACTTGCGCT 59.062 37.500 9.73 0.00 0.00 5.92
2539 2662 5.412594 TCTGAATTTCTTATGACTTGCGCTT 59.587 36.000 9.73 0.00 0.00 4.68
2540 2663 6.012658 TGAATTTCTTATGACTTGCGCTTT 57.987 33.333 9.73 0.00 0.00 3.51
2541 2664 6.446318 TGAATTTCTTATGACTTGCGCTTTT 58.554 32.000 9.73 0.00 0.00 2.27
2542 2665 7.589395 TGAATTTCTTATGACTTGCGCTTTTA 58.411 30.769 9.73 0.00 0.00 1.52
2543 2666 7.537306 TGAATTTCTTATGACTTGCGCTTTTAC 59.463 33.333 9.73 0.00 0.00 2.01
2544 2667 5.933187 TTCTTATGACTTGCGCTTTTACA 57.067 34.783 9.73 3.05 0.00 2.41
2545 2668 5.933187 TCTTATGACTTGCGCTTTTACAA 57.067 34.783 9.73 0.00 0.00 2.41
2546 2669 6.494893 TCTTATGACTTGCGCTTTTACAAT 57.505 33.333 9.73 0.00 0.00 2.71
2547 2670 6.908825 TCTTATGACTTGCGCTTTTACAATT 58.091 32.000 9.73 0.00 0.00 2.32
2548 2671 8.035165 TCTTATGACTTGCGCTTTTACAATTA 57.965 30.769 9.73 0.00 0.00 1.40
2549 2672 8.673711 TCTTATGACTTGCGCTTTTACAATTAT 58.326 29.630 9.73 0.00 0.00 1.28
2550 2673 9.289303 CTTATGACTTGCGCTTTTACAATTATT 57.711 29.630 9.73 0.00 0.00 1.40
2551 2674 9.632807 TTATGACTTGCGCTTTTACAATTATTT 57.367 25.926 9.73 0.00 0.00 1.40
2552 2675 7.938563 TGACTTGCGCTTTTACAATTATTTT 57.061 28.000 9.73 0.00 0.00 1.82
2553 2676 8.002433 TGACTTGCGCTTTTACAATTATTTTC 57.998 30.769 9.73 0.00 0.00 2.29
2554 2677 7.865385 TGACTTGCGCTTTTACAATTATTTTCT 59.135 29.630 9.73 0.00 0.00 2.52
2555 2678 9.337091 GACTTGCGCTTTTACAATTATTTTCTA 57.663 29.630 9.73 0.00 0.00 2.10
2556 2679 9.124807 ACTTGCGCTTTTACAATTATTTTCTAC 57.875 29.630 9.73 0.00 0.00 2.59
2557 2680 9.341899 CTTGCGCTTTTACAATTATTTTCTACT 57.658 29.630 9.73 0.00 0.00 2.57
2558 2681 9.685828 TTGCGCTTTTACAATTATTTTCTACTT 57.314 25.926 9.73 0.00 0.00 2.24
2559 2682 9.337091 TGCGCTTTTACAATTATTTTCTACTTC 57.663 29.630 9.73 0.00 0.00 3.01
2560 2683 9.337091 GCGCTTTTACAATTATTTTCTACTTCA 57.663 29.630 0.00 0.00 0.00 3.02
2568 2691 9.193806 ACAATTATTTTCTACTTCATGGCATCT 57.806 29.630 0.00 0.00 0.00 2.90
2571 2694 9.851686 ATTATTTTCTACTTCATGGCATCTACA 57.148 29.630 0.00 0.00 0.00 2.74
2572 2695 9.851686 TTATTTTCTACTTCATGGCATCTACAT 57.148 29.630 0.00 0.00 0.00 2.29
2574 2697 8.662781 TTTTCTACTTCATGGCATCTACATAC 57.337 34.615 0.00 0.00 0.00 2.39
2575 2698 7.603180 TTCTACTTCATGGCATCTACATACT 57.397 36.000 0.00 0.00 0.00 2.12
2576 2699 8.706322 TTCTACTTCATGGCATCTACATACTA 57.294 34.615 0.00 0.00 0.00 1.82
2577 2700 8.112016 TCTACTTCATGGCATCTACATACTAC 57.888 38.462 0.00 0.00 0.00 2.73
2578 2701 6.985653 ACTTCATGGCATCTACATACTACT 57.014 37.500 0.00 0.00 0.00 2.57
2579 2702 6.987386 ACTTCATGGCATCTACATACTACTC 58.013 40.000 0.00 0.00 0.00 2.59
2580 2703 6.780031 ACTTCATGGCATCTACATACTACTCT 59.220 38.462 0.00 0.00 0.00 3.24
2581 2704 7.288852 ACTTCATGGCATCTACATACTACTCTT 59.711 37.037 0.00 0.00 0.00 2.85
2582 2705 8.706322 TTCATGGCATCTACATACTACTCTTA 57.294 34.615 0.00 0.00 0.00 2.10
2583 2706 8.341892 TCATGGCATCTACATACTACTCTTAG 57.658 38.462 0.00 0.00 0.00 2.18
2584 2707 7.945109 TCATGGCATCTACATACTACTCTTAGT 59.055 37.037 0.00 0.00 41.69 2.24
2585 2708 9.232473 CATGGCATCTACATACTACTCTTAGTA 57.768 37.037 0.00 0.00 43.54 1.82
2586 2709 8.618702 TGGCATCTACATACTACTCTTAGTAC 57.381 38.462 0.00 0.00 42.45 2.73
2587 2710 7.664731 TGGCATCTACATACTACTCTTAGTACC 59.335 40.741 0.00 0.00 42.45 3.34
2588 2711 7.884354 GGCATCTACATACTACTCTTAGTACCT 59.116 40.741 0.00 0.00 42.45 3.08
2589 2712 9.941325 GCATCTACATACTACTCTTAGTACCTA 57.059 37.037 0.00 0.00 42.45 3.08
2592 2715 9.941325 TCTACATACTACTCTTAGTACCTATGC 57.059 37.037 0.00 0.00 42.45 3.14
2593 2716 7.999450 ACATACTACTCTTAGTACCTATGCC 57.001 40.000 0.00 0.00 42.45 4.40
2594 2717 7.524290 ACATACTACTCTTAGTACCTATGCCA 58.476 38.462 0.00 0.00 42.45 4.92
2595 2718 7.666388 ACATACTACTCTTAGTACCTATGCCAG 59.334 40.741 0.00 0.00 42.45 4.85
2596 2719 6.263412 ACTACTCTTAGTACCTATGCCAGA 57.737 41.667 0.00 0.00 36.73 3.86
2597 2720 6.063404 ACTACTCTTAGTACCTATGCCAGAC 58.937 44.000 0.00 0.00 36.73 3.51
2598 2721 5.132043 ACTCTTAGTACCTATGCCAGACT 57.868 43.478 0.00 0.00 0.00 3.24
2599 2722 5.520751 ACTCTTAGTACCTATGCCAGACTT 58.479 41.667 0.00 0.00 0.00 3.01
2600 2723 5.595133 ACTCTTAGTACCTATGCCAGACTTC 59.405 44.000 0.00 0.00 0.00 3.01
2601 2724 5.516044 TCTTAGTACCTATGCCAGACTTCA 58.484 41.667 0.00 0.00 0.00 3.02
2602 2725 6.136857 TCTTAGTACCTATGCCAGACTTCAT 58.863 40.000 0.00 0.00 0.00 2.57
2603 2726 6.611642 TCTTAGTACCTATGCCAGACTTCATT 59.388 38.462 0.00 0.00 0.00 2.57
2604 2727 5.700402 AGTACCTATGCCAGACTTCATTT 57.300 39.130 0.00 0.00 0.00 2.32
2605 2728 5.431765 AGTACCTATGCCAGACTTCATTTG 58.568 41.667 0.00 0.00 0.00 2.32
2606 2729 3.019564 ACCTATGCCAGACTTCATTTGC 58.980 45.455 0.00 0.00 0.00 3.68
2607 2730 3.018856 CCTATGCCAGACTTCATTTGCA 58.981 45.455 0.00 0.00 0.00 4.08
2608 2731 3.635373 CCTATGCCAGACTTCATTTGCAT 59.365 43.478 0.00 0.00 41.79 3.96
2609 2732 3.520290 ATGCCAGACTTCATTTGCATG 57.480 42.857 0.00 0.00 37.98 4.06
2610 2733 2.516906 TGCCAGACTTCATTTGCATGA 58.483 42.857 0.00 0.00 37.67 3.07
2611 2734 2.892215 TGCCAGACTTCATTTGCATGAA 59.108 40.909 0.00 2.89 45.54 2.57
2612 2735 3.321396 TGCCAGACTTCATTTGCATGAAA 59.679 39.130 0.00 0.00 46.67 2.69
2613 2736 4.202233 TGCCAGACTTCATTTGCATGAAAA 60.202 37.500 0.07 0.07 46.67 2.29
2614 2737 4.751098 GCCAGACTTCATTTGCATGAAAAA 59.249 37.500 2.14 0.00 46.67 1.94
2714 2837 4.335874 TGCGTTGTTAGTGTGTTTACCAAT 59.664 37.500 0.00 0.00 0.00 3.16
2718 2841 5.759506 TGTTAGTGTGTTTACCAATGGTG 57.240 39.130 16.41 0.00 36.19 4.17
2731 2854 2.083774 CAATGGTGTAGGATGCGTTGT 58.916 47.619 0.00 0.00 0.00 3.32
2751 2874 0.529773 CTTATCCGGCGTTGCTAGCA 60.530 55.000 14.93 14.93 36.08 3.49
2963 3493 5.897824 AGAATATACTCACGGGAGGAAGAAA 59.102 40.000 20.91 0.00 45.81 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.100584 CCTCATCTGGTTCTTCTCCTCG 59.899 54.545 0.00 0.00 0.00 4.63
121 122 5.485353 TCCATGTTCTCTCAATCTGGTAACT 59.515 40.000 0.00 0.00 37.61 2.24
204 205 0.842635 ATGATGCCAACTCCTCCCTC 59.157 55.000 0.00 0.00 0.00 4.30
294 299 2.908626 GACAAGAATAACAAAAGCCGCG 59.091 45.455 0.00 0.00 0.00 6.46
428 433 4.155462 GTCGATAAGCATCTATGTACCGGA 59.845 45.833 9.46 0.00 0.00 5.14
464 469 5.541868 TGGGATTTGAGCCAAGTAAAATTGA 59.458 36.000 0.00 0.00 31.55 2.57
506 511 0.249238 TTGTGCACCGACAAAATGGC 60.249 50.000 15.69 0.00 32.84 4.40
509 514 0.743688 TGCTTGTGCACCGACAAAAT 59.256 45.000 15.69 0.00 45.31 1.82
548 553 9.875691 CCATATTAGCTACAGCAATAATAGACA 57.124 33.333 3.70 0.00 45.16 3.41
554 559 6.837312 ACACCCATATTAGCTACAGCAATAA 58.163 36.000 3.70 0.00 45.16 1.40
558 563 3.071023 GGACACCCATATTAGCTACAGCA 59.929 47.826 3.70 0.00 45.16 4.41
597 602 3.183574 GTGGCATTTTTGTAGAAAACGCC 59.816 43.478 21.93 21.93 43.85 5.68
624 629 3.881937 ATTACCCAACGGTCACTACTC 57.118 47.619 0.00 0.00 43.29 2.59
653 658 4.705519 CAGCCGCAAAACGCCAGG 62.706 66.667 0.00 0.00 41.76 4.45
665 670 0.163788 CTTACTTCGTTGCACAGCCG 59.836 55.000 0.00 0.00 0.00 5.52
680 689 7.630924 CATCTTGACCGTCCAATTTATCTTAC 58.369 38.462 0.00 0.00 0.00 2.34
706 715 4.451096 ACCATGTTTACTGAGTTAACAGCG 59.549 41.667 19.83 14.65 38.21 5.18
717 726 6.515272 AAATCTTAGCCACCATGTTTACTG 57.485 37.500 0.00 0.00 0.00 2.74
791 886 7.398024 ACTGCTCCTCTATTTACTCATTTGTT 58.602 34.615 0.00 0.00 0.00 2.83
854 949 2.267006 CCTCGCAGGCAGACACAT 59.733 61.111 0.00 0.00 0.00 3.21
865 972 2.772077 TTTACACAATAGCCCTCGCA 57.228 45.000 0.00 0.00 37.52 5.10
869 976 3.616219 TGCGATTTTACACAATAGCCCT 58.384 40.909 0.00 0.00 34.76 5.19
875 982 4.202010 GCCTGGTATGCGATTTTACACAAT 60.202 41.667 0.00 0.00 0.00 2.71
878 985 2.032924 GGCCTGGTATGCGATTTTACAC 59.967 50.000 0.00 0.00 0.00 2.90
1082 1191 1.437986 CCCCGAGCGAAGTAGAAGG 59.562 63.158 0.00 0.00 0.00 3.46
1182 1291 1.226323 CTCGCCGTCCGTGAAGTAG 60.226 63.158 0.00 0.00 38.35 2.57
1191 1300 4.452733 CAGGGTTCCTCGCCGTCC 62.453 72.222 0.00 0.00 0.00 4.79
1214 1323 2.107953 GAGGCAGGAGCGTGATCC 59.892 66.667 0.00 0.00 43.41 3.36
1215 1324 2.279120 CGAGGCAGGAGCGTGATC 60.279 66.667 0.00 0.00 43.41 2.92
1229 1338 4.410400 GAGGGTTGTGGGGGCGAG 62.410 72.222 0.00 0.00 0.00 5.03
1235 1344 4.722700 CAGGCGGAGGGTTGTGGG 62.723 72.222 0.00 0.00 0.00 4.61
1290 1399 1.212616 GCTGTATCTGCTTGGCGTAG 58.787 55.000 0.00 0.00 0.00 3.51
1301 1410 1.680522 CCAGTCGCCCTGCTGTATCT 61.681 60.000 0.00 0.00 40.06 1.98
1307 1416 4.269523 TTTGCCAGTCGCCCTGCT 62.270 61.111 0.00 0.00 40.06 4.24
1313 1422 0.107654 ATAGGACCTTTGCCAGTCGC 60.108 55.000 0.00 0.00 33.66 5.19
1317 1426 4.524328 ACTTGAAAATAGGACCTTTGCCAG 59.476 41.667 0.00 0.00 0.00 4.85
1318 1427 4.280677 CACTTGAAAATAGGACCTTTGCCA 59.719 41.667 0.00 0.00 0.00 4.92
1321 1430 4.321974 GGGCACTTGAAAATAGGACCTTTG 60.322 45.833 0.00 0.00 0.00 2.77
1322 1431 3.832490 GGGCACTTGAAAATAGGACCTTT 59.168 43.478 0.00 0.00 0.00 3.11
1333 1442 1.691196 CACTCCTTGGGCACTTGAAA 58.309 50.000 0.00 0.00 0.00 2.69
1382 1491 4.410400 GGTCCTGCTTGTCCCCCG 62.410 72.222 0.00 0.00 0.00 5.73
1456 1565 1.935065 CTTGACAGAGAACGCGTCGC 61.935 60.000 14.44 7.29 32.17 5.19
1460 1569 1.009389 GTCCCTTGACAGAGAACGCG 61.009 60.000 3.53 3.53 41.37 6.01
1477 1586 0.321919 TGCACAAGATCCTGCCAGTC 60.322 55.000 5.43 0.00 31.97 3.51
1483 1592 1.998315 CTTCTCGTGCACAAGATCCTG 59.002 52.381 18.64 0.77 0.00 3.86
1486 1595 1.338200 ACCCTTCTCGTGCACAAGATC 60.338 52.381 18.64 0.00 0.00 2.75
1496 1605 0.393077 CACCTTGACACCCTTCTCGT 59.607 55.000 0.00 0.00 0.00 4.18
1512 1621 1.226101 CACAATGATGTCGCGCACC 60.226 57.895 8.75 0.00 37.82 5.01
1645 1754 2.817470 TACGTGACGGTAAAGGCGCC 62.817 60.000 21.89 21.89 0.00 6.53
1652 1761 2.083774 CTGGGTAGTACGTGACGGTAA 58.916 52.381 10.66 0.00 0.00 2.85
1682 1791 2.450345 GGCACGACGAACGATTCCC 61.450 63.158 0.00 4.67 45.77 3.97
1707 1816 2.360852 GCAGCAGCATCCACCACT 60.361 61.111 0.00 0.00 41.58 4.00
1719 1828 1.256361 CCCACTCTCTCTCAGCAGCA 61.256 60.000 0.00 0.00 0.00 4.41
1725 1834 0.040351 CCACCTCCCACTCTCTCTCA 59.960 60.000 0.00 0.00 0.00 3.27
1734 1843 4.699522 GGCGTGTCCACCTCCCAC 62.700 72.222 0.00 0.00 34.01 4.61
1861 1970 2.283604 TACCTGGAGACTGCGCCA 60.284 61.111 4.18 0.00 42.02 5.69
1879 1988 1.737793 CTGACAAGGAATTACGGTGGC 59.262 52.381 0.00 0.00 0.00 5.01
1882 1991 4.941873 GGATTTCTGACAAGGAATTACGGT 59.058 41.667 0.00 0.00 31.20 4.83
1909 2018 5.189539 TCCCATCAATCACTAGTTCATCACA 59.810 40.000 0.00 0.00 0.00 3.58
2017 2128 3.605634 CGTCCCAATCAACCTGAACATA 58.394 45.455 0.00 0.00 0.00 2.29
2053 2164 1.382522 CACTTGTTGACAGCAGGTGT 58.617 50.000 21.46 4.51 44.49 4.16
2079 2199 4.446413 CGGGTTCCCTCGGGTTCG 62.446 72.222 6.31 0.00 36.47 3.95
2088 2208 2.034999 TTGGCATCACGGGTTCCC 59.965 61.111 0.00 0.00 0.00 3.97
2093 2213 1.811266 CGTCTCTTGGCATCACGGG 60.811 63.158 0.00 0.00 0.00 5.28
2103 2223 1.153667 GGAGAGCCTGCGTCTCTTG 60.154 63.158 14.11 0.00 40.71 3.02
2155 2275 1.544314 GCCAAACAGCTTGACTCCTCT 60.544 52.381 0.00 0.00 37.17 3.69
2156 2276 0.877743 GCCAAACAGCTTGACTCCTC 59.122 55.000 0.00 0.00 37.17 3.71
2161 2281 1.269257 GGTCTTGCCAAACAGCTTGAC 60.269 52.381 0.00 0.00 37.17 3.18
2177 2297 2.778899 CCCTCTGGAACAAGGGTCT 58.221 57.895 0.00 0.00 45.38 3.85
2207 2330 4.080751 TGGTATTTTGGGTACACTAGCTCC 60.081 45.833 0.00 0.00 0.00 4.70
2237 2360 3.424300 GCCGATGCTAGCATGCAA 58.576 55.556 34.16 4.24 46.61 4.08
2301 2424 2.565391 ACATCGATGTGACCAACAGGTA 59.435 45.455 29.49 0.00 43.64 3.08
2358 2481 4.737765 TGTCAACGCAAGCAAATAAGTTTC 59.262 37.500 0.00 0.00 45.62 2.78
2365 2488 1.967762 CGATGTCAACGCAAGCAAAT 58.032 45.000 0.00 0.00 45.62 2.32
2366 2489 3.453222 CGATGTCAACGCAAGCAAA 57.547 47.368 0.00 0.00 45.62 3.68
2374 2497 1.662360 CAACAACAGCGATGTCAACG 58.338 50.000 6.84 0.00 0.00 4.10
2375 2498 1.268488 TGCAACAACAGCGATGTCAAC 60.268 47.619 6.84 0.00 33.85 3.18
2376 2499 1.020437 TGCAACAACAGCGATGTCAA 58.980 45.000 6.84 0.00 33.85 3.18
2377 2500 1.020437 TTGCAACAACAGCGATGTCA 58.980 45.000 6.84 0.00 33.85 3.58
2378 2501 1.002468 AGTTGCAACAACAGCGATGTC 60.002 47.619 30.11 0.00 33.85 3.06
2379 2502 1.024271 AGTTGCAACAACAGCGATGT 58.976 45.000 30.11 0.00 33.85 3.06
2380 2503 1.782569 CAAGTTGCAACAACAGCGATG 59.217 47.619 30.11 0.00 33.85 3.84
2381 2504 1.865248 GCAAGTTGCAACAACAGCGAT 60.865 47.619 30.11 5.09 44.26 4.58
2382 2505 0.525242 GCAAGTTGCAACAACAGCGA 60.525 50.000 30.11 0.00 44.26 4.93
2383 2506 1.800332 CGCAAGTTGCAACAACAGCG 61.800 55.000 30.11 29.51 45.36 5.18
2384 2507 1.919340 CGCAAGTTGCAACAACAGC 59.081 52.632 30.11 23.76 45.36 4.40
2385 2508 0.526096 AGCGCAAGTTGCAACAACAG 60.526 50.000 30.11 18.85 45.36 3.16
2386 2509 0.108898 AAGCGCAAGTTGCAACAACA 60.109 45.000 30.11 0.00 45.36 3.33
2387 2510 0.998669 AAAGCGCAAGTTGCAACAAC 59.001 45.000 30.11 17.53 45.36 3.32
2388 2511 1.719600 AAAAGCGCAAGTTGCAACAA 58.280 40.000 30.11 0.00 45.36 2.83
2389 2512 2.189342 GTAAAAGCGCAAGTTGCAACA 58.811 42.857 30.11 3.54 45.36 3.33
2390 2513 2.189342 TGTAAAAGCGCAAGTTGCAAC 58.811 42.857 26.56 22.17 45.36 4.17
2391 2514 2.568696 TGTAAAAGCGCAAGTTGCAA 57.431 40.000 26.56 0.00 45.36 4.08
2392 2515 2.568696 TTGTAAAAGCGCAAGTTGCA 57.431 40.000 26.56 7.31 45.36 4.08
2393 2516 5.761818 ATAATTGTAAAAGCGCAAGTTGC 57.238 34.783 18.18 18.18 40.69 4.17
2394 2517 8.487176 AGAAAATAATTGTAAAAGCGCAAGTTG 58.513 29.630 11.47 0.00 41.68 3.16
2395 2518 8.587952 AGAAAATAATTGTAAAAGCGCAAGTT 57.412 26.923 11.47 2.39 41.68 2.66
2396 2519 9.124807 GTAGAAAATAATTGTAAAAGCGCAAGT 57.875 29.630 11.47 0.00 41.68 3.16
2397 2520 9.341899 AGTAGAAAATAATTGTAAAAGCGCAAG 57.658 29.630 11.47 0.00 43.44 4.01
2398 2521 9.685828 AAGTAGAAAATAATTGTAAAAGCGCAA 57.314 25.926 11.47 0.00 0.00 4.85
2399 2522 9.337091 GAAGTAGAAAATAATTGTAAAAGCGCA 57.663 29.630 11.47 0.00 0.00 6.09
2400 2523 9.337091 TGAAGTAGAAAATAATTGTAAAAGCGC 57.663 29.630 0.00 0.00 0.00 5.92
2408 2531 9.193806 AGATGCCATGAAGTAGAAAATAATTGT 57.806 29.630 0.00 0.00 0.00 2.71
2414 2537 9.860898 GTAAAAAGATGCCATGAAGTAGAAAAT 57.139 29.630 0.00 0.00 0.00 1.82
2415 2538 8.303876 GGTAAAAAGATGCCATGAAGTAGAAAA 58.696 33.333 0.00 0.00 0.00 2.29
2416 2539 7.669722 AGGTAAAAAGATGCCATGAAGTAGAAA 59.330 33.333 0.00 0.00 0.00 2.52
2417 2540 7.121168 CAGGTAAAAAGATGCCATGAAGTAGAA 59.879 37.037 0.00 0.00 0.00 2.10
2418 2541 6.599244 CAGGTAAAAAGATGCCATGAAGTAGA 59.401 38.462 0.00 0.00 0.00 2.59
2419 2542 6.183360 CCAGGTAAAAAGATGCCATGAAGTAG 60.183 42.308 0.00 0.00 0.00 2.57
2420 2543 5.652014 CCAGGTAAAAAGATGCCATGAAGTA 59.348 40.000 0.00 0.00 0.00 2.24
2421 2544 4.463891 CCAGGTAAAAAGATGCCATGAAGT 59.536 41.667 0.00 0.00 0.00 3.01
2422 2545 4.463891 ACCAGGTAAAAAGATGCCATGAAG 59.536 41.667 0.00 0.00 0.00 3.02
2423 2546 4.415596 ACCAGGTAAAAAGATGCCATGAA 58.584 39.130 0.00 0.00 0.00 2.57
2424 2547 4.046286 ACCAGGTAAAAAGATGCCATGA 57.954 40.909 0.00 0.00 0.00 3.07
2425 2548 4.021192 ACAACCAGGTAAAAAGATGCCATG 60.021 41.667 0.00 0.00 0.00 3.66
2426 2549 4.159557 ACAACCAGGTAAAAAGATGCCAT 58.840 39.130 0.00 0.00 0.00 4.40
2427 2550 3.571590 ACAACCAGGTAAAAAGATGCCA 58.428 40.909 0.00 0.00 0.00 4.92
2428 2551 3.826729 AGACAACCAGGTAAAAAGATGCC 59.173 43.478 0.00 0.00 0.00 4.40
2429 2552 4.278419 ACAGACAACCAGGTAAAAAGATGC 59.722 41.667 0.00 0.00 0.00 3.91
2430 2553 5.299279 ACACAGACAACCAGGTAAAAAGATG 59.701 40.000 0.00 0.00 0.00 2.90
2431 2554 5.445964 ACACAGACAACCAGGTAAAAAGAT 58.554 37.500 0.00 0.00 0.00 2.40
2432 2555 4.850680 ACACAGACAACCAGGTAAAAAGA 58.149 39.130 0.00 0.00 0.00 2.52
2433 2556 6.668323 CATACACAGACAACCAGGTAAAAAG 58.332 40.000 0.00 0.00 0.00 2.27
2434 2557 5.009210 GCATACACAGACAACCAGGTAAAAA 59.991 40.000 0.00 0.00 0.00 1.94
2435 2558 4.517453 GCATACACAGACAACCAGGTAAAA 59.483 41.667 0.00 0.00 0.00 1.52
2436 2559 4.069304 GCATACACAGACAACCAGGTAAA 58.931 43.478 0.00 0.00 0.00 2.01
2437 2560 3.558321 GGCATACACAGACAACCAGGTAA 60.558 47.826 0.00 0.00 0.00 2.85
2438 2561 2.027561 GGCATACACAGACAACCAGGTA 60.028 50.000 0.00 0.00 0.00 3.08
2439 2562 1.271379 GGCATACACAGACAACCAGGT 60.271 52.381 0.00 0.00 0.00 4.00
2440 2563 1.271325 TGGCATACACAGACAACCAGG 60.271 52.381 0.00 0.00 0.00 4.45
2441 2564 2.079158 CTGGCATACACAGACAACCAG 58.921 52.381 0.00 0.00 38.20 4.00
2442 2565 1.696884 TCTGGCATACACAGACAACCA 59.303 47.619 0.00 0.00 39.87 3.67
2443 2566 2.472695 TCTGGCATACACAGACAACC 57.527 50.000 0.00 0.00 39.87 3.77
2448 2571 5.123820 GCAAATAAAGTCTGGCATACACAGA 59.876 40.000 5.77 0.00 42.31 3.41
2449 2572 5.106197 TGCAAATAAAGTCTGGCATACACAG 60.106 40.000 5.77 0.00 37.30 3.66
2450 2573 4.764308 TGCAAATAAAGTCTGGCATACACA 59.236 37.500 5.77 0.00 0.00 3.72
2451 2574 5.309323 TGCAAATAAAGTCTGGCATACAC 57.691 39.130 5.77 0.00 0.00 2.90
2452 2575 5.651576 TCATGCAAATAAAGTCTGGCATACA 59.348 36.000 5.77 0.00 39.73 2.29
2453 2576 6.135290 TCATGCAAATAAAGTCTGGCATAC 57.865 37.500 0.00 0.00 39.73 2.39
2454 2577 6.772360 TTCATGCAAATAAAGTCTGGCATA 57.228 33.333 0.00 0.00 39.73 3.14
2455 2578 5.664294 TTCATGCAAATAAAGTCTGGCAT 57.336 34.783 0.00 0.00 42.20 4.40
2456 2579 5.465532 TTTCATGCAAATAAAGTCTGGCA 57.534 34.783 0.00 0.00 35.54 4.92
2457 2580 6.783892 TTTTTCATGCAAATAAAGTCTGGC 57.216 33.333 0.00 0.00 0.00 4.85
2480 2603 6.127338 GGTGCATTTAGGGAGCTAGAATTTTT 60.127 38.462 0.00 0.00 0.00 1.94
2481 2604 5.360999 GGTGCATTTAGGGAGCTAGAATTTT 59.639 40.000 0.00 0.00 0.00 1.82
2482 2605 4.889995 GGTGCATTTAGGGAGCTAGAATTT 59.110 41.667 0.00 0.00 0.00 1.82
2483 2606 4.464947 GGTGCATTTAGGGAGCTAGAATT 58.535 43.478 0.00 0.00 0.00 2.17
2484 2607 3.181439 GGGTGCATTTAGGGAGCTAGAAT 60.181 47.826 0.00 0.00 0.00 2.40
2485 2608 2.172717 GGGTGCATTTAGGGAGCTAGAA 59.827 50.000 0.00 0.00 0.00 2.10
2486 2609 1.768870 GGGTGCATTTAGGGAGCTAGA 59.231 52.381 0.00 0.00 0.00 2.43
2487 2610 1.490490 TGGGTGCATTTAGGGAGCTAG 59.510 52.381 0.00 0.00 0.00 3.42
2488 2611 1.490490 CTGGGTGCATTTAGGGAGCTA 59.510 52.381 0.00 0.00 0.00 3.32
2489 2612 0.257039 CTGGGTGCATTTAGGGAGCT 59.743 55.000 0.00 0.00 0.00 4.09
2490 2613 1.387295 GCTGGGTGCATTTAGGGAGC 61.387 60.000 0.00 0.00 42.31 4.70
2491 2614 0.753111 GGCTGGGTGCATTTAGGGAG 60.753 60.000 0.00 0.00 45.15 4.30
2492 2615 1.306296 GGCTGGGTGCATTTAGGGA 59.694 57.895 0.00 0.00 45.15 4.20
2493 2616 0.397535 ATGGCTGGGTGCATTTAGGG 60.398 55.000 0.00 0.00 45.15 3.53
2494 2617 0.748450 CATGGCTGGGTGCATTTAGG 59.252 55.000 0.00 0.00 45.15 2.69
2495 2618 1.477553 ACATGGCTGGGTGCATTTAG 58.522 50.000 0.00 0.00 45.15 1.85
2496 2619 1.824230 GAACATGGCTGGGTGCATTTA 59.176 47.619 0.00 0.00 45.15 1.40
2497 2620 0.609662 GAACATGGCTGGGTGCATTT 59.390 50.000 0.00 0.00 45.15 2.32
2498 2621 0.251922 AGAACATGGCTGGGTGCATT 60.252 50.000 0.00 0.00 45.15 3.56
2499 2622 0.968901 CAGAACATGGCTGGGTGCAT 60.969 55.000 9.32 0.00 45.15 3.96
2500 2623 1.604308 CAGAACATGGCTGGGTGCA 60.604 57.895 9.32 0.00 45.15 4.57
2501 2624 0.895100 TTCAGAACATGGCTGGGTGC 60.895 55.000 15.21 0.00 41.94 5.01
2502 2625 1.843368 ATTCAGAACATGGCTGGGTG 58.157 50.000 15.21 0.00 34.20 4.61
2503 2626 2.610438 AATTCAGAACATGGCTGGGT 57.390 45.000 15.21 4.72 34.20 4.51
2504 2627 3.094572 AGAAATTCAGAACATGGCTGGG 58.905 45.455 15.21 0.00 34.20 4.45
2505 2628 4.796038 AAGAAATTCAGAACATGGCTGG 57.204 40.909 15.21 0.00 34.20 4.85
2506 2629 6.971184 GTCATAAGAAATTCAGAACATGGCTG 59.029 38.462 10.59 10.59 34.71 4.85
2507 2630 6.888632 AGTCATAAGAAATTCAGAACATGGCT 59.111 34.615 0.00 0.00 0.00 4.75
2508 2631 7.093322 AGTCATAAGAAATTCAGAACATGGC 57.907 36.000 0.00 0.00 0.00 4.40
2509 2632 7.487189 GCAAGTCATAAGAAATTCAGAACATGG 59.513 37.037 0.00 0.00 0.00 3.66
2510 2633 7.217636 CGCAAGTCATAAGAAATTCAGAACATG 59.782 37.037 0.00 0.00 0.00 3.21
2511 2634 7.246311 CGCAAGTCATAAGAAATTCAGAACAT 58.754 34.615 0.00 0.00 0.00 2.71
2512 2635 6.602179 CGCAAGTCATAAGAAATTCAGAACA 58.398 36.000 0.00 0.00 0.00 3.18
2513 2636 5.509622 GCGCAAGTCATAAGAAATTCAGAAC 59.490 40.000 0.30 0.00 41.68 3.01
2514 2637 5.412594 AGCGCAAGTCATAAGAAATTCAGAA 59.587 36.000 11.47 0.00 41.68 3.02
2515 2638 4.937620 AGCGCAAGTCATAAGAAATTCAGA 59.062 37.500 11.47 0.00 41.68 3.27
2516 2639 5.227238 AGCGCAAGTCATAAGAAATTCAG 57.773 39.130 11.47 0.00 41.68 3.02
2517 2640 5.627499 AAGCGCAAGTCATAAGAAATTCA 57.373 34.783 11.47 0.00 41.68 2.57
2518 2641 6.934561 AAAAGCGCAAGTCATAAGAAATTC 57.065 33.333 11.47 0.00 41.68 2.17
2519 2642 7.367285 TGTAAAAGCGCAAGTCATAAGAAATT 58.633 30.769 11.47 0.00 41.68 1.82
2520 2643 6.908825 TGTAAAAGCGCAAGTCATAAGAAAT 58.091 32.000 11.47 0.00 41.68 2.17
2521 2644 6.307031 TGTAAAAGCGCAAGTCATAAGAAA 57.693 33.333 11.47 0.00 41.68 2.52
2522 2645 5.933187 TGTAAAAGCGCAAGTCATAAGAA 57.067 34.783 11.47 0.00 41.68 2.52
2523 2646 5.933187 TTGTAAAAGCGCAAGTCATAAGA 57.067 34.783 11.47 0.00 41.68 2.10
2524 2647 8.841444 ATAATTGTAAAAGCGCAAGTCATAAG 57.159 30.769 11.47 0.00 41.68 1.73
2525 2648 9.632807 AAATAATTGTAAAAGCGCAAGTCATAA 57.367 25.926 11.47 0.00 41.68 1.90
2526 2649 9.632807 AAAATAATTGTAAAAGCGCAAGTCATA 57.367 25.926 11.47 0.00 41.68 2.15
2527 2650 8.532977 AAAATAATTGTAAAAGCGCAAGTCAT 57.467 26.923 11.47 0.00 41.68 3.06
2528 2651 7.865385 AGAAAATAATTGTAAAAGCGCAAGTCA 59.135 29.630 11.47 0.00 41.68 3.41
2529 2652 8.227731 AGAAAATAATTGTAAAAGCGCAAGTC 57.772 30.769 11.47 0.00 41.68 3.01
2530 2653 9.124807 GTAGAAAATAATTGTAAAAGCGCAAGT 57.875 29.630 11.47 0.00 41.68 3.16
2531 2654 9.341899 AGTAGAAAATAATTGTAAAAGCGCAAG 57.658 29.630 11.47 0.00 43.44 4.01
2532 2655 9.685828 AAGTAGAAAATAATTGTAAAAGCGCAA 57.314 25.926 11.47 0.00 0.00 4.85
2533 2656 9.337091 GAAGTAGAAAATAATTGTAAAAGCGCA 57.663 29.630 11.47 0.00 0.00 6.09
2534 2657 9.337091 TGAAGTAGAAAATAATTGTAAAAGCGC 57.663 29.630 0.00 0.00 0.00 5.92
2542 2665 9.193806 AGATGCCATGAAGTAGAAAATAATTGT 57.806 29.630 0.00 0.00 0.00 2.71
2545 2668 9.851686 TGTAGATGCCATGAAGTAGAAAATAAT 57.148 29.630 0.00 0.00 0.00 1.28
2546 2669 9.851686 ATGTAGATGCCATGAAGTAGAAAATAA 57.148 29.630 0.00 0.00 0.00 1.40
2548 2671 9.277783 GTATGTAGATGCCATGAAGTAGAAAAT 57.722 33.333 0.00 0.00 0.00 1.82
2549 2672 8.486210 AGTATGTAGATGCCATGAAGTAGAAAA 58.514 33.333 0.00 0.00 0.00 2.29
2550 2673 8.023021 AGTATGTAGATGCCATGAAGTAGAAA 57.977 34.615 0.00 0.00 0.00 2.52
2551 2674 7.603180 AGTATGTAGATGCCATGAAGTAGAA 57.397 36.000 0.00 0.00 0.00 2.10
2552 2675 7.945109 AGTAGTATGTAGATGCCATGAAGTAGA 59.055 37.037 0.00 0.00 0.00 2.59
2553 2676 8.116651 AGTAGTATGTAGATGCCATGAAGTAG 57.883 38.462 0.00 0.00 0.00 2.57
2554 2677 7.945109 AGAGTAGTATGTAGATGCCATGAAGTA 59.055 37.037 0.00 0.00 0.00 2.24
2555 2678 6.780031 AGAGTAGTATGTAGATGCCATGAAGT 59.220 38.462 0.00 0.00 0.00 3.01
2556 2679 7.225784 AGAGTAGTATGTAGATGCCATGAAG 57.774 40.000 0.00 0.00 0.00 3.02
2557 2680 7.603180 AAGAGTAGTATGTAGATGCCATGAA 57.397 36.000 0.00 0.00 0.00 2.57
2558 2681 7.945109 ACTAAGAGTAGTATGTAGATGCCATGA 59.055 37.037 0.00 0.00 38.87 3.07
2559 2682 8.116651 ACTAAGAGTAGTATGTAGATGCCATG 57.883 38.462 0.00 0.00 38.87 3.66
2560 2683 9.233649 GTACTAAGAGTAGTATGTAGATGCCAT 57.766 37.037 0.00 0.00 43.20 4.40
2561 2684 7.664731 GGTACTAAGAGTAGTATGTAGATGCCA 59.335 40.741 0.00 0.00 43.20 4.92
2562 2685 7.884354 AGGTACTAAGAGTAGTATGTAGATGCC 59.116 40.741 0.00 0.00 43.20 4.40
2563 2686 8.851541 AGGTACTAAGAGTAGTATGTAGATGC 57.148 38.462 0.00 0.00 43.20 3.91
2582 2705 5.431765 CAAATGAAGTCTGGCATAGGTACT 58.568 41.667 0.00 0.00 46.37 2.73
2583 2706 4.035675 GCAAATGAAGTCTGGCATAGGTAC 59.964 45.833 0.00 0.00 0.00 3.34
2584 2707 4.199310 GCAAATGAAGTCTGGCATAGGTA 58.801 43.478 0.00 0.00 0.00 3.08
2585 2708 3.019564 GCAAATGAAGTCTGGCATAGGT 58.980 45.455 0.00 0.00 0.00 3.08
2586 2709 3.018856 TGCAAATGAAGTCTGGCATAGG 58.981 45.455 0.00 0.00 0.00 2.57
2587 2710 4.337274 TCATGCAAATGAAGTCTGGCATAG 59.663 41.667 0.00 0.00 39.73 2.23
2588 2711 4.271661 TCATGCAAATGAAGTCTGGCATA 58.728 39.130 0.00 0.00 39.73 3.14
2589 2712 3.093814 TCATGCAAATGAAGTCTGGCAT 58.906 40.909 0.00 0.00 42.20 4.40
2590 2713 2.516906 TCATGCAAATGAAGTCTGGCA 58.483 42.857 0.00 0.00 35.54 4.92
2591 2714 3.581024 TTCATGCAAATGAAGTCTGGC 57.419 42.857 0.00 0.00 35.80 4.85
2611 2734 8.885693 AGTGATTTAGGGAGCTAGAAATTTTT 57.114 30.769 0.00 0.00 0.00 1.94
2612 2735 9.397280 GTAGTGATTTAGGGAGCTAGAAATTTT 57.603 33.333 0.00 0.00 0.00 1.82
2613 2736 8.548877 TGTAGTGATTTAGGGAGCTAGAAATTT 58.451 33.333 0.00 0.00 0.00 1.82
2614 2737 8.090788 TGTAGTGATTTAGGGAGCTAGAAATT 57.909 34.615 0.00 0.00 0.00 1.82
2615 2738 7.676683 TGTAGTGATTTAGGGAGCTAGAAAT 57.323 36.000 0.00 0.00 0.00 2.17
2616 2739 7.038587 TGTTGTAGTGATTTAGGGAGCTAGAAA 60.039 37.037 0.00 0.00 0.00 2.52
2617 2740 6.439375 TGTTGTAGTGATTTAGGGAGCTAGAA 59.561 38.462 0.00 0.00 0.00 2.10
2618 2741 5.955959 TGTTGTAGTGATTTAGGGAGCTAGA 59.044 40.000 0.00 0.00 0.00 2.43
2619 2742 6.222038 TGTTGTAGTGATTTAGGGAGCTAG 57.778 41.667 0.00 0.00 0.00 3.42
2620 2743 5.128827 CCTGTTGTAGTGATTTAGGGAGCTA 59.871 44.000 0.00 0.00 0.00 3.32
2621 2744 4.080863 CCTGTTGTAGTGATTTAGGGAGCT 60.081 45.833 0.00 0.00 0.00 4.09
2622 2745 4.081087 TCCTGTTGTAGTGATTTAGGGAGC 60.081 45.833 0.00 0.00 0.00 4.70
2623 2746 5.677319 TCCTGTTGTAGTGATTTAGGGAG 57.323 43.478 0.00 0.00 0.00 4.30
2624 2747 5.280317 GGTTCCTGTTGTAGTGATTTAGGGA 60.280 44.000 0.00 0.00 0.00 4.20
2625 2748 4.941873 GGTTCCTGTTGTAGTGATTTAGGG 59.058 45.833 0.00 0.00 0.00 3.53
2626 2749 4.941873 GGGTTCCTGTTGTAGTGATTTAGG 59.058 45.833 0.00 0.00 0.00 2.69
2627 2750 4.941873 GGGGTTCCTGTTGTAGTGATTTAG 59.058 45.833 0.00 0.00 0.00 1.85
2628 2751 4.263594 GGGGGTTCCTGTTGTAGTGATTTA 60.264 45.833 0.00 0.00 0.00 1.40
2629 2752 3.499745 GGGGGTTCCTGTTGTAGTGATTT 60.500 47.826 0.00 0.00 0.00 2.17
2630 2753 2.041216 GGGGGTTCCTGTTGTAGTGATT 59.959 50.000 0.00 0.00 0.00 2.57
2714 2837 0.973632 AGACAACGCATCCTACACCA 59.026 50.000 0.00 0.00 0.00 4.17
2718 2841 3.050619 CGGATAAGACAACGCATCCTAC 58.949 50.000 0.00 0.00 35.74 3.18
2731 2854 0.249322 GCTAGCAACGCCGGATAAGA 60.249 55.000 10.63 0.00 0.00 2.10
2751 2874 4.635765 ACACATAGAAGCGTTGCATTATGT 59.364 37.500 0.00 6.89 34.51 2.29
2763 3259 5.106157 ACAATAAGCACCAACACATAGAAGC 60.106 40.000 0.00 0.00 0.00 3.86
2817 3332 4.499183 TGAACCACGTTGCAAATTCTTTT 58.501 34.783 0.00 0.00 0.00 2.27
2997 3527 9.241317 GGATGATTTTTCTTGTGTAATATGCAG 57.759 33.333 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.