Multiple sequence alignment - TraesCS7D01G462400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G462400 chr7D 100.000 3180 0 0 1 3180 578011166 578014345 0.000000e+00 5873.0
1 TraesCS7D01G462400 chr7D 84.995 973 128 12 1079 2036 578467198 578468167 0.000000e+00 972.0
2 TraesCS7D01G462400 chr7D 82.865 1068 156 10 1043 2105 577782242 577781197 0.000000e+00 933.0
3 TraesCS7D01G462400 chr7D 96.844 507 10 4 3 504 597541475 597540970 0.000000e+00 843.0
4 TraesCS7D01G462400 chr7D 87.241 580 49 18 1243 1819 578138884 578138327 3.460000e-179 638.0
5 TraesCS7D01G462400 chr7D 85.593 354 51 0 1052 1405 578040269 578040622 3.870000e-99 372.0
6 TraesCS7D01G462400 chr7D 100.000 140 0 0 507 646 597540523 597540384 3.150000e-65 259.0
7 TraesCS7D01G462400 chr7A 91.660 1271 86 8 935 2188 670284195 670282928 0.000000e+00 1742.0
8 TraesCS7D01G462400 chr7A 83.197 1220 169 25 870 2070 670553604 670554806 0.000000e+00 1085.0
9 TraesCS7D01G462400 chr7A 78.883 824 143 10 1043 1862 670171916 670172712 2.170000e-146 529.0
10 TraesCS7D01G462400 chr7A 80.357 336 27 20 2354 2686 670177312 670177611 5.340000e-53 219.0
11 TraesCS7D01G462400 chr7B 91.680 1226 78 11 938 2142 641603514 641604736 0.000000e+00 1677.0
12 TraesCS7D01G462400 chr7B 81.183 1031 164 20 1016 2036 641374525 641375535 0.000000e+00 802.0
13 TraesCS7D01G462400 chr7B 82.688 878 102 22 792 1642 642264549 642265403 0.000000e+00 734.0
14 TraesCS7D01G462400 chr7B 88.914 442 45 4 2740 3180 480639669 480639231 2.790000e-150 542.0
15 TraesCS7D01G462400 chr7B 87.224 407 30 13 2289 2676 642062037 642061634 8.090000e-121 444.0
16 TraesCS7D01G462400 chr7B 87.328 363 45 1 1755 2117 642063063 642062702 6.350000e-112 414.0
17 TraesCS7D01G462400 chr7B 85.867 375 35 14 2289 2651 641375846 641376214 1.790000e-102 383.0
18 TraesCS7D01G462400 chr7B 75.918 681 135 17 1033 1703 641730295 641729634 3.960000e-84 322.0
19 TraesCS7D01G462400 chr7B 76.776 366 50 27 2185 2546 641729181 641728847 4.220000e-39 172.0
20 TraesCS7D01G462400 chr7B 77.517 298 46 15 4 281 123867919 123868215 3.280000e-35 159.0
21 TraesCS7D01G462400 chr7B 95.349 43 2 0 2643 2685 641376503 641376545 5.690000e-08 69.4
22 TraesCS7D01G462400 chr7B 91.837 49 4 0 2140 2188 642061443 642061395 5.690000e-08 69.4
23 TraesCS7D01G462400 chr7B 100.000 36 0 0 2107 2142 642062700 642062665 2.050000e-07 67.6
24 TraesCS7D01G462400 chr1D 95.643 459 19 1 2723 3180 298504212 298504670 0.000000e+00 736.0
25 TraesCS7D01G462400 chr1A 90.549 455 42 1 2727 3180 553737036 553736582 4.540000e-168 601.0
26 TraesCS7D01G462400 chr1A 84.065 433 63 6 2748 3175 4216951 4217382 2.280000e-111 412.0
27 TraesCS7D01G462400 chr3D 96.508 315 10 1 2867 3180 253535707 253536021 1.310000e-143 520.0
28 TraesCS7D01G462400 chr3D 85.164 519 56 8 1521 2036 55188698 55189198 2.190000e-141 512.0
29 TraesCS7D01G462400 chr3D 80.392 306 32 14 3 281 23828038 23827734 1.160000e-49 207.0
30 TraesCS7D01G462400 chr3D 81.481 270 31 9 5 257 547997976 547998243 1.500000e-48 204.0
31 TraesCS7D01G462400 chr3D 89.286 56 6 0 324 379 526947728 526947673 1.580000e-08 71.3
32 TraesCS7D01G462400 chr5B 87.810 443 53 1 2739 3180 477555380 477554938 4.700000e-143 518.0
33 TraesCS7D01G462400 chr5B 88.991 109 9 2 683 791 595334141 595334246 7.160000e-27 132.0
34 TraesCS7D01G462400 chr5B 91.549 71 5 1 512 581 387894973 387895043 2.610000e-16 97.1
35 TraesCS7D01G462400 chrUn 88.131 396 46 1 2739 3133 77038873 77039268 1.340000e-128 470.0
36 TraesCS7D01G462400 chrUn 83.444 151 18 4 138 281 134361304 134361154 1.990000e-27 134.0
37 TraesCS7D01G462400 chr2A 85.941 441 56 6 2740 3178 762938512 762938948 1.730000e-127 466.0
38 TraesCS7D01G462400 chr4A 82.379 454 77 3 2728 3179 610099129 610098677 2.970000e-105 392.0
39 TraesCS7D01G462400 chr4A 83.221 149 19 6 138 281 614601657 614601804 7.160000e-27 132.0
40 TraesCS7D01G462400 chr2D 81.711 339 35 17 3 314 517079153 517079491 1.130000e-64 257.0
41 TraesCS7D01G462400 chr4B 91.379 174 9 1 331 504 31656764 31656931 1.910000e-57 233.0
42 TraesCS7D01G462400 chr2B 80.743 296 37 13 3 281 612093462 612093754 2.480000e-51 213.0
43 TraesCS7D01G462400 chr6D 77.922 308 35 24 3 281 4779558 4779861 9.130000e-36 161.0
44 TraesCS7D01G462400 chr6B 94.444 54 3 0 323 376 713426946 713426893 2.030000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G462400 chr7D 578011166 578014345 3179 False 5873.000000 5873 100.000000 1 3180 1 chr7D.!!$F1 3179
1 TraesCS7D01G462400 chr7D 578467198 578468167 969 False 972.000000 972 84.995000 1079 2036 1 chr7D.!!$F3 957
2 TraesCS7D01G462400 chr7D 577781197 577782242 1045 True 933.000000 933 82.865000 1043 2105 1 chr7D.!!$R1 1062
3 TraesCS7D01G462400 chr7D 578138327 578138884 557 True 638.000000 638 87.241000 1243 1819 1 chr7D.!!$R2 576
4 TraesCS7D01G462400 chr7D 597540384 597541475 1091 True 551.000000 843 98.422000 3 646 2 chr7D.!!$R3 643
5 TraesCS7D01G462400 chr7A 670282928 670284195 1267 True 1742.000000 1742 91.660000 935 2188 1 chr7A.!!$R1 1253
6 TraesCS7D01G462400 chr7A 670553604 670554806 1202 False 1085.000000 1085 83.197000 870 2070 1 chr7A.!!$F3 1200
7 TraesCS7D01G462400 chr7A 670171916 670172712 796 False 529.000000 529 78.883000 1043 1862 1 chr7A.!!$F1 819
8 TraesCS7D01G462400 chr7B 641603514 641604736 1222 False 1677.000000 1677 91.680000 938 2142 1 chr7B.!!$F2 1204
9 TraesCS7D01G462400 chr7B 642264549 642265403 854 False 734.000000 734 82.688000 792 1642 1 chr7B.!!$F3 850
10 TraesCS7D01G462400 chr7B 641374525 641376545 2020 False 418.133333 802 87.466333 1016 2685 3 chr7B.!!$F4 1669
11 TraesCS7D01G462400 chr7B 642061395 642063063 1668 True 248.750000 444 91.597250 1755 2676 4 chr7B.!!$R3 921
12 TraesCS7D01G462400 chr7B 641728847 641730295 1448 True 247.000000 322 76.347000 1033 2546 2 chr7B.!!$R2 1513
13 TraesCS7D01G462400 chr3D 55188698 55189198 500 False 512.000000 512 85.164000 1521 2036 1 chr3D.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 1292 0.028505 GATGCATGCATGTGTCGTCC 59.971 55.0 36.73 16.24 36.7 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2718 4178 0.030705 CCCTCCCTCATCCTCCTTCA 60.031 60.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 249 3.493877 TGAAGCAATGTTTGGAATTTGCG 59.506 39.130 0.00 0.00 46.84 4.85
249 251 1.136000 GCAATGTTTGGAATTTGCGCC 60.136 47.619 4.18 0.00 35.62 6.53
255 257 1.707632 TTGGAATTTGCGCCAAATCG 58.292 45.000 4.18 0.00 42.32 3.34
364 366 3.479269 CTCGCGTGCTCCCGTTTC 61.479 66.667 5.77 0.00 0.00 2.78
427 429 4.386867 TCATCGAGGGAATACAGTTGTC 57.613 45.455 0.00 0.00 0.00 3.18
646 1096 3.308438 CAGTAATTGCAGCTTTGCCTT 57.692 42.857 0.00 0.00 0.00 4.35
647 1097 2.991190 CAGTAATTGCAGCTTTGCCTTG 59.009 45.455 0.00 0.00 0.00 3.61
648 1098 1.728425 GTAATTGCAGCTTTGCCTTGC 59.272 47.619 0.00 0.00 38.30 4.01
649 1099 0.395312 AATTGCAGCTTTGCCTTGCT 59.605 45.000 0.00 0.00 40.54 3.91
650 1100 0.037605 ATTGCAGCTTTGCCTTGCTC 60.038 50.000 0.00 0.00 37.44 4.26
651 1101 2.126580 GCAGCTTTGCCTTGCTCG 60.127 61.111 0.00 0.00 37.44 5.03
652 1102 2.126580 CAGCTTTGCCTTGCTCGC 60.127 61.111 0.00 0.00 37.44 5.03
653 1103 2.595463 AGCTTTGCCTTGCTCGCA 60.595 55.556 0.00 0.00 33.90 5.10
654 1104 2.126580 GCTTTGCCTTGCTCGCAG 60.127 61.111 0.00 0.00 37.57 5.18
655 1105 2.912624 GCTTTGCCTTGCTCGCAGT 61.913 57.895 0.00 0.00 37.57 4.40
656 1106 1.577328 GCTTTGCCTTGCTCGCAGTA 61.577 55.000 0.00 0.00 37.57 2.74
657 1107 0.874390 CTTTGCCTTGCTCGCAGTAA 59.126 50.000 0.00 0.00 37.57 2.24
658 1108 1.266718 CTTTGCCTTGCTCGCAGTAAA 59.733 47.619 0.00 0.00 37.57 2.01
659 1109 1.313772 TTGCCTTGCTCGCAGTAAAA 58.686 45.000 0.00 0.00 37.57 1.52
660 1110 1.313772 TGCCTTGCTCGCAGTAAAAA 58.686 45.000 0.00 0.00 0.00 1.94
688 1138 9.573133 AATGAAACTTTTAGTTGAGTTCAAGTG 57.427 29.630 11.50 0.00 38.66 3.16
689 1139 8.330466 TGAAACTTTTAGTTGAGTTCAAGTGA 57.670 30.769 11.50 1.88 38.66 3.41
690 1140 8.788806 TGAAACTTTTAGTTGAGTTCAAGTGAA 58.211 29.630 11.50 7.45 38.66 3.18
691 1141 9.788960 GAAACTTTTAGTTGAGTTCAAGTGAAT 57.211 29.630 11.50 0.00 38.66 2.57
698 1148 7.133891 AGTTGAGTTCAAGTGAATATTTCGG 57.866 36.000 1.54 0.00 38.04 4.30
699 1149 5.545658 TGAGTTCAAGTGAATATTTCGGC 57.454 39.130 0.00 0.00 36.33 5.54
700 1150 4.394920 TGAGTTCAAGTGAATATTTCGGCC 59.605 41.667 0.00 0.00 36.33 6.13
701 1151 3.694566 AGTTCAAGTGAATATTTCGGCCC 59.305 43.478 0.00 0.00 36.33 5.80
702 1152 3.644966 TCAAGTGAATATTTCGGCCCT 57.355 42.857 0.00 0.00 0.00 5.19
703 1153 3.963129 TCAAGTGAATATTTCGGCCCTT 58.037 40.909 0.00 0.00 0.00 3.95
704 1154 4.340617 TCAAGTGAATATTTCGGCCCTTT 58.659 39.130 0.00 0.00 0.00 3.11
705 1155 4.157656 TCAAGTGAATATTTCGGCCCTTTG 59.842 41.667 0.00 0.00 0.00 2.77
706 1156 3.023832 AGTGAATATTTCGGCCCTTTGG 58.976 45.455 0.00 0.00 0.00 3.28
718 1168 2.547299 CCCTTTGGCTGAAATGCAAA 57.453 45.000 0.00 0.00 34.04 3.68
719 1169 2.145536 CCCTTTGGCTGAAATGCAAAC 58.854 47.619 0.00 0.00 34.04 2.93
720 1170 2.224354 CCCTTTGGCTGAAATGCAAACT 60.224 45.455 0.00 0.00 34.04 2.66
721 1171 2.803956 CCTTTGGCTGAAATGCAAACTG 59.196 45.455 0.00 0.00 34.04 3.16
722 1172 2.529780 TTGGCTGAAATGCAAACTGG 57.470 45.000 0.00 0.00 34.04 4.00
723 1173 1.702182 TGGCTGAAATGCAAACTGGA 58.298 45.000 0.00 0.00 34.04 3.86
724 1174 2.037901 TGGCTGAAATGCAAACTGGAA 58.962 42.857 0.00 0.00 34.04 3.53
725 1175 2.633967 TGGCTGAAATGCAAACTGGAAT 59.366 40.909 0.00 0.00 34.04 3.01
726 1176 3.256558 GGCTGAAATGCAAACTGGAATC 58.743 45.455 0.00 0.00 34.04 2.52
727 1177 3.306225 GGCTGAAATGCAAACTGGAATCA 60.306 43.478 0.00 0.00 34.04 2.57
728 1178 3.676646 GCTGAAATGCAAACTGGAATCAC 59.323 43.478 0.00 0.00 0.00 3.06
729 1179 4.240096 CTGAAATGCAAACTGGAATCACC 58.760 43.478 0.00 0.00 39.54 4.02
730 1180 3.244976 GAAATGCAAACTGGAATCACCG 58.755 45.455 0.00 0.00 42.61 4.94
731 1181 2.198827 ATGCAAACTGGAATCACCGA 57.801 45.000 0.00 0.00 42.61 4.69
732 1182 1.974265 TGCAAACTGGAATCACCGAA 58.026 45.000 0.00 0.00 42.61 4.30
733 1183 2.302260 TGCAAACTGGAATCACCGAAA 58.698 42.857 0.00 0.00 42.61 3.46
734 1184 2.890311 TGCAAACTGGAATCACCGAAAT 59.110 40.909 0.00 0.00 42.61 2.17
735 1185 3.320541 TGCAAACTGGAATCACCGAAATT 59.679 39.130 0.00 0.00 42.61 1.82
736 1186 3.920412 GCAAACTGGAATCACCGAAATTC 59.080 43.478 0.00 0.00 42.61 2.17
737 1187 4.558496 GCAAACTGGAATCACCGAAATTCA 60.558 41.667 0.00 0.00 42.61 2.57
738 1188 4.766404 AACTGGAATCACCGAAATTCAC 57.234 40.909 0.00 0.00 42.61 3.18
739 1189 2.742053 ACTGGAATCACCGAAATTCACG 59.258 45.455 0.00 0.00 42.61 4.35
749 1199 3.241701 CCGAAATTCACGGTGATTTTGG 58.758 45.455 26.57 24.44 44.57 3.28
750 1200 3.305064 CCGAAATTCACGGTGATTTTGGT 60.305 43.478 26.57 10.61 44.57 3.67
751 1201 4.083217 CCGAAATTCACGGTGATTTTGGTA 60.083 41.667 26.57 7.21 44.57 3.25
752 1202 5.086058 CGAAATTCACGGTGATTTTGGTAG 58.914 41.667 26.57 15.29 32.21 3.18
753 1203 5.385509 AAATTCACGGTGATTTTGGTAGG 57.614 39.130 22.94 0.00 31.25 3.18
754 1204 3.495434 TTCACGGTGATTTTGGTAGGT 57.505 42.857 12.26 0.00 0.00 3.08
755 1205 2.773487 TCACGGTGATTTTGGTAGGTG 58.227 47.619 6.76 0.00 0.00 4.00
756 1206 1.199097 CACGGTGATTTTGGTAGGTGC 59.801 52.381 0.74 0.00 0.00 5.01
757 1207 1.073284 ACGGTGATTTTGGTAGGTGCT 59.927 47.619 0.00 0.00 0.00 4.40
758 1208 1.468520 CGGTGATTTTGGTAGGTGCTG 59.531 52.381 0.00 0.00 0.00 4.41
759 1209 2.790433 GGTGATTTTGGTAGGTGCTGA 58.210 47.619 0.00 0.00 0.00 4.26
760 1210 3.153919 GGTGATTTTGGTAGGTGCTGAA 58.846 45.455 0.00 0.00 0.00 3.02
761 1211 3.572255 GGTGATTTTGGTAGGTGCTGAAA 59.428 43.478 0.00 0.00 0.00 2.69
762 1212 4.220602 GGTGATTTTGGTAGGTGCTGAAAT 59.779 41.667 0.00 0.00 0.00 2.17
763 1213 5.279456 GGTGATTTTGGTAGGTGCTGAAATT 60.279 40.000 0.00 0.00 0.00 1.82
764 1214 6.223120 GTGATTTTGGTAGGTGCTGAAATTT 58.777 36.000 0.00 0.00 0.00 1.82
765 1215 6.705825 GTGATTTTGGTAGGTGCTGAAATTTT 59.294 34.615 0.00 0.00 0.00 1.82
766 1216 7.226523 GTGATTTTGGTAGGTGCTGAAATTTTT 59.773 33.333 0.00 0.00 0.00 1.94
767 1217 6.917217 TTTTGGTAGGTGCTGAAATTTTTG 57.083 33.333 0.00 0.00 0.00 2.44
768 1218 5.606348 TTGGTAGGTGCTGAAATTTTTGT 57.394 34.783 0.00 0.00 0.00 2.83
769 1219 4.942852 TGGTAGGTGCTGAAATTTTTGTG 58.057 39.130 0.00 0.00 0.00 3.33
770 1220 4.646945 TGGTAGGTGCTGAAATTTTTGTGA 59.353 37.500 0.00 0.00 0.00 3.58
771 1221 5.127845 TGGTAGGTGCTGAAATTTTTGTGAA 59.872 36.000 0.00 0.00 0.00 3.18
772 1222 6.045955 GGTAGGTGCTGAAATTTTTGTGAAA 58.954 36.000 0.00 0.00 0.00 2.69
773 1223 6.019075 GGTAGGTGCTGAAATTTTTGTGAAAC 60.019 38.462 0.00 0.00 37.35 2.78
790 1240 7.536895 TGTGAAACAGAAATTGAAAACCATG 57.463 32.000 0.00 0.00 45.67 3.66
798 1248 5.602145 AGAAATTGAAAACCATGGTCCTGAA 59.398 36.000 20.07 9.17 0.00 3.02
821 1274 6.808321 ACTAGGATTACACAAGCTTATGGA 57.192 37.500 9.97 0.00 0.00 3.41
824 1277 4.823989 AGGATTACACAAGCTTATGGATGC 59.176 41.667 9.97 8.05 0.00 3.91
825 1278 4.580167 GGATTACACAAGCTTATGGATGCA 59.420 41.667 9.97 0.00 0.00 3.96
826 1279 5.242393 GGATTACACAAGCTTATGGATGCAT 59.758 40.000 9.97 4.68 0.00 3.96
827 1280 5.503662 TTACACAAGCTTATGGATGCATG 57.496 39.130 9.97 0.00 34.57 4.06
828 1281 2.100252 ACACAAGCTTATGGATGCATGC 59.900 45.455 11.82 11.82 32.02 4.06
829 1282 2.100087 CACAAGCTTATGGATGCATGCA 59.900 45.455 25.04 25.04 32.02 3.96
839 1292 0.028505 GATGCATGCATGTGTCGTCC 59.971 55.000 36.73 16.24 36.70 4.79
842 1295 2.114670 CATGCATGTGTCGTCCCCC 61.115 63.158 18.91 0.00 0.00 5.40
853 1306 1.558294 GTCGTCCCCCAACCTAAAGAT 59.442 52.381 0.00 0.00 0.00 2.40
854 1307 1.835531 TCGTCCCCCAACCTAAAGATC 59.164 52.381 0.00 0.00 0.00 2.75
858 1311 2.576191 TCCCCCAACCTAAAGATCACAG 59.424 50.000 0.00 0.00 0.00 3.66
876 1335 1.008538 GAAACGTGGCTTGCCACAG 60.009 57.895 34.59 28.82 40.38 3.66
877 1336 3.137637 AAACGTGGCTTGCCACAGC 62.138 57.895 34.59 15.89 40.38 4.40
895 1354 2.709475 CACCTCAATTAGCCGCGC 59.291 61.111 0.00 0.00 0.00 6.86
896 1355 2.890474 ACCTCAATTAGCCGCGCG 60.890 61.111 25.67 25.67 0.00 6.86
897 1356 4.299316 CCTCAATTAGCCGCGCGC 62.299 66.667 27.36 23.91 37.98 6.86
898 1357 4.633596 CTCAATTAGCCGCGCGCG 62.634 66.667 43.73 43.73 44.76 6.86
912 1374 2.433145 CGCGTGACCATGCTCTGT 60.433 61.111 11.81 0.00 41.02 3.41
915 1377 2.393768 CGTGACCATGCTCTGTGCC 61.394 63.158 0.00 0.00 42.00 5.01
983 1446 5.205056 CCACCTCTGACTATATATCCCCTC 58.795 50.000 0.00 0.00 0.00 4.30
984 1447 5.043732 CCACCTCTGACTATATATCCCCTCT 60.044 48.000 0.00 0.00 0.00 3.69
1013 1483 0.778083 GTCCCTGTTCCTTTCCCCTT 59.222 55.000 0.00 0.00 0.00 3.95
1276 1758 2.127869 CGGCCTCCTCCATCTCGAA 61.128 63.158 0.00 0.00 0.00 3.71
1278 1760 0.105778 GGCCTCCTCCATCTCGAAAG 59.894 60.000 0.00 0.00 0.00 2.62
1795 2305 3.055080 CTTCCGCGGCATGCACATT 62.055 57.895 23.51 0.00 46.97 2.71
1888 2398 4.314440 ACGCAGCTGGCTTTCGGA 62.314 61.111 17.12 0.00 41.67 4.55
2058 2568 4.175599 CGAGAGCTTGCACGTCAT 57.824 55.556 0.00 0.00 0.00 3.06
2085 2595 2.673368 CGAAGAACTACCTGACCAATGC 59.327 50.000 0.00 0.00 0.00 3.56
2207 3078 6.761312 AGAAGATTTTGGACATTTTGCATGA 58.239 32.000 0.00 0.00 0.00 3.07
2208 3079 6.872020 AGAAGATTTTGGACATTTTGCATGAG 59.128 34.615 0.00 0.00 0.00 2.90
2217 3088 4.571919 ACATTTTGCATGAGTGGGATTTG 58.428 39.130 0.00 0.00 0.00 2.32
2251 3274 4.033358 CGAGTATGATTGTTGAGCACCTTC 59.967 45.833 0.00 0.00 0.00 3.46
2252 3275 3.935203 AGTATGATTGTTGAGCACCTTCG 59.065 43.478 0.00 0.00 0.00 3.79
2253 3276 1.522668 TGATTGTTGAGCACCTTCGG 58.477 50.000 0.00 0.00 0.00 4.30
2254 3277 1.071542 TGATTGTTGAGCACCTTCGGA 59.928 47.619 0.00 0.00 0.00 4.55
2255 3278 2.290260 TGATTGTTGAGCACCTTCGGAT 60.290 45.455 0.00 0.00 0.00 4.18
2257 3280 0.396435 TGTTGAGCACCTTCGGATGT 59.604 50.000 0.00 0.00 0.00 3.06
2258 3281 0.798776 GTTGAGCACCTTCGGATGTG 59.201 55.000 0.00 0.00 35.58 3.21
2259 3282 0.684535 TTGAGCACCTTCGGATGTGA 59.315 50.000 2.94 0.00 34.37 3.58
2261 3284 1.134699 TGAGCACCTTCGGATGTGATC 60.135 52.381 10.11 10.11 45.54 2.92
2262 3285 0.179100 AGCACCTTCGGATGTGATCG 60.179 55.000 2.94 0.00 34.37 3.69
2282 3322 5.087391 TCGAGTATCACTCTAGTCACTGT 57.913 43.478 4.91 0.00 42.92 3.55
2283 3323 5.110598 TCGAGTATCACTCTAGTCACTGTC 58.889 45.833 4.91 0.00 42.92 3.51
2285 3325 4.834534 AGTATCACTCTAGTCACTGTCGT 58.165 43.478 0.00 0.00 0.00 4.34
2286 3326 5.975282 AGTATCACTCTAGTCACTGTCGTA 58.025 41.667 0.00 0.00 0.00 3.43
2302 3357 0.796312 CGTATGCCAGTGTGTCCAAC 59.204 55.000 0.00 0.00 0.00 3.77
2308 3363 2.024414 GCCAGTGTGTCCAACTTCTTT 58.976 47.619 0.00 0.00 0.00 2.52
2359 3418 3.683340 CAGATGAATGCCATGATCCTACG 59.317 47.826 0.00 0.00 35.17 3.51
2377 3449 1.268589 ACGAGATTCATAGTGTCCGCG 60.269 52.381 0.00 0.00 0.00 6.46
2407 3479 6.705863 ATTGCCTTCAATTCCTTAGATGTC 57.294 37.500 0.00 0.00 39.78 3.06
2408 3480 4.526970 TGCCTTCAATTCCTTAGATGTCC 58.473 43.478 0.00 0.00 0.00 4.02
2409 3481 3.561725 GCCTTCAATTCCTTAGATGTCCG 59.438 47.826 0.00 0.00 0.00 4.79
2423 3495 9.158233 CCTTAGATGTCCGAAAAGTATTTACAA 57.842 33.333 0.00 0.00 37.28 2.41
2468 3544 4.131596 CCCAAAACAACTTCTTCTCCGTA 58.868 43.478 0.00 0.00 0.00 4.02
2469 3545 4.760204 CCCAAAACAACTTCTTCTCCGTAT 59.240 41.667 0.00 0.00 0.00 3.06
2489 3565 7.176865 TCCGTATGGTTAGAGAAATGATAGGAG 59.823 40.741 0.00 0.00 36.30 3.69
2540 3618 3.629398 AGCAGAATTTCTAAAGGATGGCG 59.371 43.478 0.00 0.00 0.00 5.69
2707 4167 7.446931 TGGAAGTAATCATACAAAAGAACTGCA 59.553 33.333 0.00 0.00 34.29 4.41
2708 4168 8.296713 GGAAGTAATCATACAAAAGAACTGCAA 58.703 33.333 0.00 0.00 34.29 4.08
2709 4169 9.846248 GAAGTAATCATACAAAAGAACTGCAAT 57.154 29.630 0.00 0.00 34.29 3.56
2713 4173 8.986477 AATCATACAAAAGAACTGCAATTACC 57.014 30.769 0.00 0.00 0.00 2.85
2714 4174 7.759489 TCATACAAAAGAACTGCAATTACCT 57.241 32.000 0.00 0.00 0.00 3.08
2715 4175 8.856153 TCATACAAAAGAACTGCAATTACCTA 57.144 30.769 0.00 0.00 0.00 3.08
2718 4178 7.582667 ACAAAAGAACTGCAATTACCTACTT 57.417 32.000 0.00 0.00 0.00 2.24
2720 4180 7.284489 ACAAAAGAACTGCAATTACCTACTTGA 59.716 33.333 0.00 0.00 0.00 3.02
2721 4181 7.817418 AAAGAACTGCAATTACCTACTTGAA 57.183 32.000 0.00 0.00 0.00 2.69
2722 4182 7.440523 AAGAACTGCAATTACCTACTTGAAG 57.559 36.000 0.00 0.00 34.68 3.02
2723 4183 5.940470 AGAACTGCAATTACCTACTTGAAGG 59.060 40.000 0.00 0.00 42.82 3.46
2724 4184 5.499004 ACTGCAATTACCTACTTGAAGGA 57.501 39.130 0.00 0.00 39.15 3.36
2725 4185 5.491982 ACTGCAATTACCTACTTGAAGGAG 58.508 41.667 0.00 0.00 39.15 3.69
2726 4186 4.843728 TGCAATTACCTACTTGAAGGAGG 58.156 43.478 21.88 21.88 39.15 4.30
2727 4187 4.534500 TGCAATTACCTACTTGAAGGAGGA 59.466 41.667 29.65 8.98 39.15 3.71
2728 4188 5.191722 TGCAATTACCTACTTGAAGGAGGAT 59.808 40.000 29.65 15.72 39.15 3.24
2729 4189 5.529060 GCAATTACCTACTTGAAGGAGGATG 59.471 44.000 29.65 20.50 39.15 3.51
2731 4191 6.739331 ATTACCTACTTGAAGGAGGATGAG 57.261 41.667 29.65 3.20 39.15 2.90
2733 4193 2.703007 CCTACTTGAAGGAGGATGAGGG 59.297 54.545 18.97 0.00 39.15 4.30
2734 4194 2.649742 ACTTGAAGGAGGATGAGGGA 57.350 50.000 0.00 0.00 0.00 4.20
2737 4197 0.030705 TGAAGGAGGATGAGGGAGGG 60.031 60.000 0.00 0.00 0.00 4.30
2738 4198 1.385206 AAGGAGGATGAGGGAGGGC 60.385 63.158 0.00 0.00 0.00 5.19
2740 4200 2.123251 GAGGATGAGGGAGGGCGA 60.123 66.667 0.00 0.00 0.00 5.54
2742 4202 3.237741 GGATGAGGGAGGGCGAGG 61.238 72.222 0.00 0.00 0.00 4.63
2752 4212 4.821589 GGGCGAGGCGGAGACAAG 62.822 72.222 0.00 0.00 39.87 3.16
2753 4213 4.821589 GGCGAGGCGGAGACAAGG 62.822 72.222 0.00 0.00 39.87 3.61
2755 4215 4.821589 CGAGGCGGAGACAAGGCC 62.822 72.222 0.00 0.00 39.87 5.19
2762 4222 4.821589 GAGACAAGGCCGCCCGAG 62.822 72.222 5.55 0.00 35.76 4.63
2776 4236 4.963428 CGAGGCGGCCGGAATACC 62.963 72.222 29.38 19.23 0.00 2.73
2777 4237 3.857038 GAGGCGGCCGGAATACCA 61.857 66.667 29.38 0.00 35.59 3.25
2778 4238 4.171103 AGGCGGCCGGAATACCAC 62.171 66.667 29.38 6.97 35.59 4.16
2803 4263 2.719979 GGCTCGATCTTCGCCGTA 59.280 61.111 0.00 0.00 40.21 4.02
2804 4264 1.286260 GGCTCGATCTTCGCCGTAT 59.714 57.895 0.00 0.00 40.21 3.06
2805 4265 1.004277 GGCTCGATCTTCGCCGTATG 61.004 60.000 0.00 0.00 40.21 2.39
2806 4266 1.004277 GCTCGATCTTCGCCGTATGG 61.004 60.000 0.00 0.00 40.21 2.74
2807 4267 0.591659 CTCGATCTTCGCCGTATGGA 59.408 55.000 4.73 0.00 40.21 3.41
2808 4268 1.200252 CTCGATCTTCGCCGTATGGAT 59.800 52.381 4.73 0.00 40.21 3.41
2809 4269 1.068541 TCGATCTTCGCCGTATGGATG 60.069 52.381 4.73 0.00 40.21 3.51
2810 4270 1.071605 GATCTTCGCCGTATGGATGC 58.928 55.000 4.73 0.00 37.49 3.91
2814 4274 3.842602 CGCCGTATGGATGCGTAG 58.157 61.111 4.73 0.00 43.12 3.51
2815 4275 1.284715 CGCCGTATGGATGCGTAGA 59.715 57.895 4.73 0.00 43.12 2.59
2816 4276 0.729478 CGCCGTATGGATGCGTAGAG 60.729 60.000 4.73 0.00 43.12 2.43
2817 4277 0.388649 GCCGTATGGATGCGTAGAGG 60.389 60.000 4.73 4.21 37.49 3.69
2818 4278 1.244816 CCGTATGGATGCGTAGAGGA 58.755 55.000 0.00 0.00 37.49 3.71
2819 4279 1.200252 CCGTATGGATGCGTAGAGGAG 59.800 57.143 0.00 0.00 37.49 3.69
2820 4280 1.880675 CGTATGGATGCGTAGAGGAGT 59.119 52.381 0.00 0.00 0.00 3.85
2821 4281 2.095668 CGTATGGATGCGTAGAGGAGTC 60.096 54.545 0.00 0.00 0.00 3.36
2822 4282 0.955178 ATGGATGCGTAGAGGAGTCG 59.045 55.000 0.00 0.00 0.00 4.18
2828 4288 3.835686 CGTAGAGGAGTCGCATCTG 57.164 57.895 0.66 0.00 38.28 2.90
2829 4289 1.300481 CGTAGAGGAGTCGCATCTGA 58.700 55.000 0.66 0.00 38.28 3.27
2830 4290 1.876799 CGTAGAGGAGTCGCATCTGAT 59.123 52.381 0.66 0.00 38.28 2.90
2831 4291 2.095969 CGTAGAGGAGTCGCATCTGATC 60.096 54.545 0.66 0.00 38.28 2.92
2832 4292 1.327303 AGAGGAGTCGCATCTGATCC 58.673 55.000 0.00 0.00 36.07 3.36
2833 4293 0.039617 GAGGAGTCGCATCTGATCCG 60.040 60.000 0.00 0.00 35.13 4.18
2834 4294 0.753479 AGGAGTCGCATCTGATCCGT 60.753 55.000 0.35 0.00 35.13 4.69
2835 4295 0.318275 GGAGTCGCATCTGATCCGTC 60.318 60.000 0.35 0.00 0.00 4.79
2836 4296 0.318275 GAGTCGCATCTGATCCGTCC 60.318 60.000 0.35 0.00 0.00 4.79
2837 4297 1.658717 GTCGCATCTGATCCGTCCG 60.659 63.158 0.35 0.00 0.00 4.79
2838 4298 3.032609 CGCATCTGATCCGTCCGC 61.033 66.667 0.00 0.00 0.00 5.54
2839 4299 3.032609 GCATCTGATCCGTCCGCG 61.033 66.667 0.00 0.00 37.95 6.46
2840 4300 2.721859 CATCTGATCCGTCCGCGA 59.278 61.111 8.23 0.00 41.33 5.87
2841 4301 1.287191 CATCTGATCCGTCCGCGAT 59.713 57.895 8.23 0.00 41.33 4.58
2842 4302 0.730834 CATCTGATCCGTCCGCGATC 60.731 60.000 8.23 2.07 41.33 3.69
2843 4303 0.891449 ATCTGATCCGTCCGCGATCT 60.891 55.000 8.23 0.00 41.33 2.75
2844 4304 1.081774 CTGATCCGTCCGCGATCTC 60.082 63.158 8.23 0.00 41.33 2.75
2845 4305 2.255856 GATCCGTCCGCGATCTCC 59.744 66.667 8.23 0.00 41.33 3.71
2846 4306 3.270335 GATCCGTCCGCGATCTCCC 62.270 68.421 8.23 0.00 41.33 4.30
2847 4307 4.807631 TCCGTCCGCGATCTCCCA 62.808 66.667 8.23 0.00 41.33 4.37
2848 4308 3.833645 CCGTCCGCGATCTCCCAA 61.834 66.667 8.23 0.00 41.33 4.12
2849 4309 2.417516 CGTCCGCGATCTCCCAAT 59.582 61.111 8.23 0.00 41.33 3.16
2850 4310 1.658114 CGTCCGCGATCTCCCAATA 59.342 57.895 8.23 0.00 41.33 1.90
2851 4311 0.031585 CGTCCGCGATCTCCCAATAA 59.968 55.000 8.23 0.00 41.33 1.40
2852 4312 1.499049 GTCCGCGATCTCCCAATAAC 58.501 55.000 8.23 0.00 0.00 1.89
2853 4313 0.391597 TCCGCGATCTCCCAATAACC 59.608 55.000 8.23 0.00 0.00 2.85
2854 4314 0.393077 CCGCGATCTCCCAATAACCT 59.607 55.000 8.23 0.00 0.00 3.50
2855 4315 1.605712 CCGCGATCTCCCAATAACCTC 60.606 57.143 8.23 0.00 0.00 3.85
2856 4316 1.784525 GCGATCTCCCAATAACCTCG 58.215 55.000 0.00 0.00 0.00 4.63
2857 4317 1.784525 CGATCTCCCAATAACCTCGC 58.215 55.000 0.00 0.00 0.00 5.03
2858 4318 1.784525 GATCTCCCAATAACCTCGCG 58.215 55.000 0.00 0.00 0.00 5.87
2859 4319 0.393077 ATCTCCCAATAACCTCGCGG 59.607 55.000 6.13 0.00 0.00 6.46
2860 4320 1.887707 CTCCCAATAACCTCGCGGC 60.888 63.158 6.13 0.00 0.00 6.53
2861 4321 3.269347 CCCAATAACCTCGCGGCG 61.269 66.667 17.70 17.70 0.00 6.46
2862 4322 3.269347 CCAATAACCTCGCGGCGG 61.269 66.667 23.46 12.92 0.00 6.13
2863 4323 2.510691 CAATAACCTCGCGGCGGT 60.511 61.111 23.46 14.02 35.97 5.68
2864 4324 2.510691 AATAACCTCGCGGCGGTG 60.511 61.111 23.46 15.81 34.33 4.94
2877 4337 3.781307 CGGTGCCATCGGGAGGAA 61.781 66.667 0.00 0.00 35.59 3.36
2878 4338 2.674754 GGTGCCATCGGGAGGAAA 59.325 61.111 0.00 0.00 35.59 3.13
2879 4339 1.452108 GGTGCCATCGGGAGGAAAG 60.452 63.158 0.00 0.00 35.59 2.62
2880 4340 1.452108 GTGCCATCGGGAGGAAAGG 60.452 63.158 0.00 0.00 35.59 3.11
2881 4341 1.923395 TGCCATCGGGAGGAAAGGT 60.923 57.895 0.00 0.00 35.59 3.50
2882 4342 1.452108 GCCATCGGGAGGAAAGGTG 60.452 63.158 0.00 0.00 35.59 4.00
2883 4343 1.224592 CCATCGGGAGGAAAGGTGG 59.775 63.158 0.00 0.00 35.59 4.61
2884 4344 1.224592 CATCGGGAGGAAAGGTGGG 59.775 63.158 0.00 0.00 0.00 4.61
2885 4345 2.001269 ATCGGGAGGAAAGGTGGGG 61.001 63.158 0.00 0.00 0.00 4.96
2886 4346 2.782997 ATCGGGAGGAAAGGTGGGGT 62.783 60.000 0.00 0.00 0.00 4.95
2887 4347 2.967946 CGGGAGGAAAGGTGGGGTC 61.968 68.421 0.00 0.00 0.00 4.46
2888 4348 2.669240 GGAGGAAAGGTGGGGTCG 59.331 66.667 0.00 0.00 0.00 4.79
2889 4349 1.916777 GGAGGAAAGGTGGGGTCGA 60.917 63.158 0.00 0.00 0.00 4.20
2890 4350 1.295746 GAGGAAAGGTGGGGTCGAC 59.704 63.158 7.13 7.13 0.00 4.20
2891 4351 2.047560 GGAAAGGTGGGGTCGACG 60.048 66.667 9.92 0.00 0.00 5.12
2892 4352 2.576832 GGAAAGGTGGGGTCGACGA 61.577 63.158 9.92 0.00 0.00 4.20
2893 4353 1.080025 GAAAGGTGGGGTCGACGAG 60.080 63.158 9.92 0.00 0.00 4.18
2894 4354 1.530013 GAAAGGTGGGGTCGACGAGA 61.530 60.000 9.92 0.00 0.00 4.04
2895 4355 0.903454 AAAGGTGGGGTCGACGAGAT 60.903 55.000 9.92 0.00 0.00 2.75
2896 4356 1.321074 AAGGTGGGGTCGACGAGATC 61.321 60.000 9.92 0.00 0.00 2.75
2905 4365 3.515286 GACGAGATCGGGCGGTGA 61.515 66.667 7.22 0.00 44.95 4.02
2906 4366 3.753070 GACGAGATCGGGCGGTGAC 62.753 68.421 7.22 0.00 44.95 3.67
2907 4367 4.570663 CGAGATCGGGCGGTGACC 62.571 72.222 0.00 0.00 35.37 4.02
2918 4378 3.624305 CGGTGACCGTAGTGATCAG 57.376 57.895 17.28 0.00 42.73 2.90
2919 4379 0.809385 CGGTGACCGTAGTGATCAGT 59.191 55.000 17.28 8.40 42.73 3.41
2920 4380 1.202154 CGGTGACCGTAGTGATCAGTC 60.202 57.143 17.28 5.71 42.73 3.51
2921 4381 1.134560 GGTGACCGTAGTGATCAGTCC 59.865 57.143 6.25 0.00 0.00 3.85
2922 4382 1.134560 GTGACCGTAGTGATCAGTCCC 59.865 57.143 6.25 0.00 0.00 4.46
2923 4383 1.272258 TGACCGTAGTGATCAGTCCCA 60.272 52.381 6.25 0.00 0.00 4.37
2924 4384 1.134560 GACCGTAGTGATCAGTCCCAC 59.865 57.143 6.25 0.00 0.00 4.61
2925 4385 0.100682 CCGTAGTGATCAGTCCCACG 59.899 60.000 14.65 14.65 38.26 4.94
2926 4386 0.100682 CGTAGTGATCAGTCCCACGG 59.899 60.000 6.25 0.00 38.26 4.94
2927 4387 0.179108 GTAGTGATCAGTCCCACGGC 60.179 60.000 6.25 0.00 38.26 5.68
2928 4388 1.663379 TAGTGATCAGTCCCACGGCG 61.663 60.000 6.25 4.80 38.26 6.46
2929 4389 2.678580 TGATCAGTCCCACGGCGA 60.679 61.111 16.62 0.00 0.00 5.54
2930 4390 2.105128 GATCAGTCCCACGGCGAG 59.895 66.667 16.62 5.31 0.00 5.03
2931 4391 2.362503 ATCAGTCCCACGGCGAGA 60.363 61.111 16.62 4.14 0.00 4.04
2932 4392 1.739338 GATCAGTCCCACGGCGAGAT 61.739 60.000 16.62 4.82 0.00 2.75
2933 4393 1.739338 ATCAGTCCCACGGCGAGATC 61.739 60.000 16.62 0.00 0.00 2.75
2934 4394 3.148279 AGTCCCACGGCGAGATCC 61.148 66.667 16.62 0.00 0.00 3.36
2935 4395 3.458163 GTCCCACGGCGAGATCCA 61.458 66.667 16.62 0.00 0.00 3.41
2936 4396 2.682136 TCCCACGGCGAGATCCAA 60.682 61.111 16.62 0.00 0.00 3.53
2937 4397 2.511600 CCCACGGCGAGATCCAAC 60.512 66.667 16.62 0.00 0.00 3.77
2938 4398 2.264480 CCACGGCGAGATCCAACA 59.736 61.111 16.62 0.00 0.00 3.33
2939 4399 1.811266 CCACGGCGAGATCCAACAG 60.811 63.158 16.62 0.00 0.00 3.16
2940 4400 1.811266 CACGGCGAGATCCAACAGG 60.811 63.158 16.62 0.00 0.00 4.00
2941 4401 1.982395 ACGGCGAGATCCAACAGGA 60.982 57.895 16.62 0.00 35.50 3.86
2942 4402 1.227089 CGGCGAGATCCAACAGGAG 60.227 63.158 0.00 0.00 34.25 3.69
2943 4403 1.144936 GGCGAGATCCAACAGGAGG 59.855 63.158 0.00 0.00 34.25 4.30
2944 4404 1.330655 GGCGAGATCCAACAGGAGGA 61.331 60.000 0.00 0.00 39.97 3.71
2945 4405 0.537188 GCGAGATCCAACAGGAGGAA 59.463 55.000 0.00 0.00 38.93 3.36
2946 4406 1.472376 GCGAGATCCAACAGGAGGAAG 60.472 57.143 0.00 0.00 38.93 3.46
2947 4407 2.103373 CGAGATCCAACAGGAGGAAGA 58.897 52.381 0.00 0.00 38.93 2.87
2948 4408 2.497675 CGAGATCCAACAGGAGGAAGAA 59.502 50.000 0.00 0.00 38.93 2.52
2949 4409 3.677424 CGAGATCCAACAGGAGGAAGAAC 60.677 52.174 0.00 0.00 38.93 3.01
2950 4410 2.234908 AGATCCAACAGGAGGAAGAACG 59.765 50.000 0.00 0.00 38.93 3.95
2951 4411 1.420430 TCCAACAGGAGGAAGAACGT 58.580 50.000 0.00 0.00 30.71 3.99
2952 4412 1.070134 TCCAACAGGAGGAAGAACGTG 59.930 52.381 0.00 0.00 30.71 4.49
2953 4413 1.202651 CCAACAGGAGGAAGAACGTGT 60.203 52.381 0.00 0.00 36.84 4.49
2954 4414 1.867233 CAACAGGAGGAAGAACGTGTG 59.133 52.381 0.00 0.00 35.74 3.82
2955 4415 0.249911 ACAGGAGGAAGAACGTGTGC 60.250 55.000 0.00 0.00 34.60 4.57
2956 4416 0.249868 CAGGAGGAAGAACGTGTGCA 60.250 55.000 0.00 0.00 0.00 4.57
2957 4417 0.249911 AGGAGGAAGAACGTGTGCAC 60.250 55.000 10.75 10.75 0.00 4.57
2958 4418 0.531974 GGAGGAAGAACGTGTGCACA 60.532 55.000 17.42 17.42 0.00 4.57
2959 4419 1.295792 GAGGAAGAACGTGTGCACAA 58.704 50.000 23.59 2.55 0.00 3.33
2960 4420 1.873591 GAGGAAGAACGTGTGCACAAT 59.126 47.619 23.59 10.38 0.00 2.71
2961 4421 1.603802 AGGAAGAACGTGTGCACAATG 59.396 47.619 23.59 19.39 0.00 2.82
2962 4422 1.334960 GGAAGAACGTGTGCACAATGG 60.335 52.381 23.59 16.15 0.00 3.16
2963 4423 0.030638 AAGAACGTGTGCACAATGGC 59.969 50.000 23.59 11.80 0.00 4.40
2964 4424 1.100463 AGAACGTGTGCACAATGGCA 61.100 50.000 23.59 0.00 42.53 4.92
2965 4425 0.661187 GAACGTGTGCACAATGGCAG 60.661 55.000 23.59 11.14 45.96 4.85
2966 4426 2.074230 AACGTGTGCACAATGGCAGG 62.074 55.000 23.59 5.98 45.96 4.85
2967 4427 2.048877 GTGTGCACAATGGCAGGC 60.049 61.111 23.59 2.10 45.96 4.85
2968 4428 3.672447 TGTGCACAATGGCAGGCG 61.672 61.111 19.28 0.00 45.96 5.52
2969 4429 3.364441 GTGCACAATGGCAGGCGA 61.364 61.111 13.17 0.00 45.96 5.54
2970 4430 2.361483 TGCACAATGGCAGGCGAT 60.361 55.556 0.00 0.00 39.25 4.58
2971 4431 2.409055 TGCACAATGGCAGGCGATC 61.409 57.895 0.00 0.00 39.25 3.69
2972 4432 2.117156 GCACAATGGCAGGCGATCT 61.117 57.895 0.00 0.00 0.00 2.75
2973 4433 1.660560 GCACAATGGCAGGCGATCTT 61.661 55.000 0.00 0.00 0.00 2.40
2974 4434 0.379669 CACAATGGCAGGCGATCTTC 59.620 55.000 0.00 0.00 0.00 2.87
2975 4435 0.254178 ACAATGGCAGGCGATCTTCT 59.746 50.000 0.00 0.00 0.00 2.85
2976 4436 0.942962 CAATGGCAGGCGATCTTCTC 59.057 55.000 0.00 0.00 0.00 2.87
2977 4437 0.179034 AATGGCAGGCGATCTTCTCC 60.179 55.000 0.00 0.00 0.00 3.71
2978 4438 2.279784 GGCAGGCGATCTTCTCCG 60.280 66.667 0.00 0.00 0.00 4.63
2979 4439 2.786495 GGCAGGCGATCTTCTCCGA 61.786 63.158 0.00 0.00 0.00 4.55
2980 4440 1.590259 GCAGGCGATCTTCTCCGAC 60.590 63.158 0.00 0.00 0.00 4.79
2981 4441 1.298713 CAGGCGATCTTCTCCGACG 60.299 63.158 0.00 0.00 39.12 5.12
2982 4442 1.451567 AGGCGATCTTCTCCGACGA 60.452 57.895 0.00 0.00 39.12 4.20
2983 4443 1.009449 GGCGATCTTCTCCGACGAG 60.009 63.158 0.00 0.00 37.48 4.18
2984 4444 1.437772 GGCGATCTTCTCCGACGAGA 61.438 60.000 0.00 0.00 43.62 4.04
2985 4445 0.316360 GCGATCTTCTCCGACGAGAC 60.316 60.000 0.00 0.00 45.01 3.36
2986 4446 0.042880 CGATCTTCTCCGACGAGACG 60.043 60.000 0.00 0.00 45.01 4.18
2994 4454 3.950254 CGACGAGACGGATCCGGG 61.950 72.222 35.87 23.44 44.69 5.73
2995 4455 4.267503 GACGAGACGGATCCGGGC 62.268 72.222 35.87 26.56 44.69 6.13
2998 4458 4.267503 GAGACGGATCCGGGCGTC 62.268 72.222 35.87 24.16 44.69 5.19
2999 4459 4.816984 AGACGGATCCGGGCGTCT 62.817 66.667 35.87 25.91 44.69 4.18
3000 4460 4.570663 GACGGATCCGGGCGTCTG 62.571 72.222 35.87 8.28 44.69 3.51
3006 4466 4.807631 TCCGGGCGTCTGGATCGA 62.808 66.667 15.21 0.00 43.23 3.59
3007 4467 3.833645 CCGGGCGTCTGGATCGAA 61.834 66.667 10.10 0.00 42.08 3.71
3008 4468 2.278857 CGGGCGTCTGGATCGAAG 60.279 66.667 0.00 0.00 0.00 3.79
3009 4469 2.107141 GGGCGTCTGGATCGAAGG 59.893 66.667 0.00 0.00 0.00 3.46
3010 4470 2.107141 GGCGTCTGGATCGAAGGG 59.893 66.667 0.00 0.00 0.00 3.95
3011 4471 2.423898 GGCGTCTGGATCGAAGGGA 61.424 63.158 0.00 0.00 0.00 4.20
3012 4472 1.066587 GCGTCTGGATCGAAGGGAG 59.933 63.158 0.00 0.00 0.00 4.30
3013 4473 1.736586 CGTCTGGATCGAAGGGAGG 59.263 63.158 0.00 0.00 0.00 4.30
3014 4474 1.443828 GTCTGGATCGAAGGGAGGC 59.556 63.158 0.00 0.00 0.00 4.70
3015 4475 1.045911 GTCTGGATCGAAGGGAGGCT 61.046 60.000 0.00 0.00 0.00 4.58
3016 4476 0.325671 TCTGGATCGAAGGGAGGCTT 60.326 55.000 0.00 0.00 0.00 4.35
3017 4477 0.105778 CTGGATCGAAGGGAGGCTTC 59.894 60.000 0.00 0.00 0.00 3.86
3024 4484 1.657822 GAAGGGAGGCTTCGATTCAC 58.342 55.000 4.88 0.00 0.00 3.18
3025 4485 0.984230 AAGGGAGGCTTCGATTCACA 59.016 50.000 0.00 0.00 0.00 3.58
3026 4486 0.250513 AGGGAGGCTTCGATTCACAC 59.749 55.000 0.00 0.00 0.00 3.82
3027 4487 0.744771 GGGAGGCTTCGATTCACACC 60.745 60.000 0.00 0.00 0.00 4.16
3028 4488 1.084370 GGAGGCTTCGATTCACACCG 61.084 60.000 0.00 0.00 0.00 4.94
3029 4489 1.696832 GAGGCTTCGATTCACACCGC 61.697 60.000 0.00 0.00 0.00 5.68
3030 4490 2.032634 GGCTTCGATTCACACCGCA 61.033 57.895 0.00 0.00 0.00 5.69
3031 4491 1.369091 GGCTTCGATTCACACCGCAT 61.369 55.000 0.00 0.00 0.00 4.73
3032 4492 0.447801 GCTTCGATTCACACCGCATT 59.552 50.000 0.00 0.00 0.00 3.56
3033 4493 1.529826 GCTTCGATTCACACCGCATTC 60.530 52.381 0.00 0.00 0.00 2.67
3034 4494 0.718904 TTCGATTCACACCGCATTCG 59.281 50.000 0.00 0.00 0.00 3.34
3035 4495 1.296867 CGATTCACACCGCATTCGC 60.297 57.895 0.00 0.00 0.00 4.70
3051 4511 4.400961 GCGGTGGCTGGCTCTTCT 62.401 66.667 2.00 0.00 35.83 2.85
3052 4512 2.348998 CGGTGGCTGGCTCTTCTT 59.651 61.111 2.00 0.00 0.00 2.52
3053 4513 2.037136 CGGTGGCTGGCTCTTCTTG 61.037 63.158 2.00 0.00 0.00 3.02
3054 4514 1.376466 GGTGGCTGGCTCTTCTTGA 59.624 57.895 2.00 0.00 0.00 3.02
3055 4515 0.034670 GGTGGCTGGCTCTTCTTGAT 60.035 55.000 2.00 0.00 0.00 2.57
3056 4516 1.377536 GTGGCTGGCTCTTCTTGATC 58.622 55.000 2.00 0.00 0.00 2.92
3057 4517 1.065564 GTGGCTGGCTCTTCTTGATCT 60.066 52.381 2.00 0.00 0.00 2.75
3058 4518 1.065636 TGGCTGGCTCTTCTTGATCTG 60.066 52.381 2.00 0.00 0.00 2.90
3059 4519 1.666054 GCTGGCTCTTCTTGATCTGG 58.334 55.000 0.00 0.00 0.00 3.86
3060 4520 1.209019 GCTGGCTCTTCTTGATCTGGA 59.791 52.381 0.00 0.00 0.00 3.86
3061 4521 2.742530 GCTGGCTCTTCTTGATCTGGAG 60.743 54.545 0.00 0.00 0.00 3.86
3062 4522 2.765135 CTGGCTCTTCTTGATCTGGAGA 59.235 50.000 0.00 0.00 0.00 3.71
3063 4523 3.176411 TGGCTCTTCTTGATCTGGAGAA 58.824 45.455 0.00 0.82 0.00 2.87
3064 4524 3.055530 TGGCTCTTCTTGATCTGGAGAAC 60.056 47.826 0.00 0.00 0.00 3.01
3065 4525 3.186119 GCTCTTCTTGATCTGGAGAACG 58.814 50.000 0.00 0.00 0.00 3.95
3066 4526 3.119316 GCTCTTCTTGATCTGGAGAACGA 60.119 47.826 0.00 1.68 0.00 3.85
3067 4527 4.420168 CTCTTCTTGATCTGGAGAACGAC 58.580 47.826 0.00 0.00 0.00 4.34
3068 4528 3.826729 TCTTCTTGATCTGGAGAACGACA 59.173 43.478 0.00 0.00 0.00 4.35
3069 4529 4.464244 TCTTCTTGATCTGGAGAACGACAT 59.536 41.667 0.00 0.00 0.00 3.06
3070 4530 4.377839 TCTTGATCTGGAGAACGACATC 57.622 45.455 0.00 0.00 0.00 3.06
3071 4531 3.131223 TCTTGATCTGGAGAACGACATCC 59.869 47.826 0.00 0.00 36.05 3.51
3072 4532 2.739943 TGATCTGGAGAACGACATCCT 58.260 47.619 0.00 0.00 36.50 3.24
3073 4533 2.690497 TGATCTGGAGAACGACATCCTC 59.310 50.000 0.00 0.00 36.50 3.71
3086 4546 2.627737 ATCCTCGCCGGCGACTATC 61.628 63.158 45.37 4.95 44.01 2.08
3087 4547 3.288290 CCTCGCCGGCGACTATCT 61.288 66.667 45.37 0.00 44.01 1.98
3089 4549 1.207085 CTCGCCGGCGACTATCTAC 59.793 63.158 45.37 2.34 44.01 2.59
3092 4552 2.952245 CCGGCGACTATCTACCCG 59.048 66.667 9.30 0.00 38.71 5.28
3093 4553 1.598962 CCGGCGACTATCTACCCGA 60.599 63.158 9.30 0.00 41.34 5.14
3094 4554 1.573436 CGGCGACTATCTACCCGAC 59.427 63.158 0.00 0.00 41.34 4.79
3096 4556 1.573436 GCGACTATCTACCCGACGG 59.427 63.158 6.99 6.99 0.00 4.79
3100 4560 2.142319 GACTATCTACCCGACGGAGAC 58.858 57.143 17.49 0.00 0.00 3.36
3101 4561 1.487976 ACTATCTACCCGACGGAGACA 59.512 52.381 17.49 0.00 0.00 3.41
3103 4563 1.319541 ATCTACCCGACGGAGACATG 58.680 55.000 17.49 0.00 0.00 3.21
3107 4567 0.175760 ACCCGACGGAGACATGATTG 59.824 55.000 17.49 0.00 0.00 2.67
3108 4568 0.459899 CCCGACGGAGACATGATTGA 59.540 55.000 17.49 0.00 0.00 2.57
3110 4570 1.536922 CCGACGGAGACATGATTGAGG 60.537 57.143 8.64 0.00 0.00 3.86
3113 4573 3.549019 CGACGGAGACATGATTGAGGTAG 60.549 52.174 0.00 0.00 0.00 3.18
3114 4574 2.695666 ACGGAGACATGATTGAGGTAGG 59.304 50.000 0.00 0.00 0.00 3.18
3117 4577 4.383118 CGGAGACATGATTGAGGTAGGTTT 60.383 45.833 0.00 0.00 0.00 3.27
3120 4580 7.110155 GGAGACATGATTGAGGTAGGTTTTAA 58.890 38.462 0.00 0.00 0.00 1.52
3121 4581 7.610305 GGAGACATGATTGAGGTAGGTTTTAAA 59.390 37.037 0.00 0.00 0.00 1.52
3122 4582 9.178758 GAGACATGATTGAGGTAGGTTTTAAAT 57.821 33.333 0.00 0.00 0.00 1.40
3123 4583 9.533831 AGACATGATTGAGGTAGGTTTTAAATT 57.466 29.630 0.00 0.00 0.00 1.82
3124 4584 9.788960 GACATGATTGAGGTAGGTTTTAAATTC 57.211 33.333 0.00 0.00 0.00 2.17
3128 4588 9.974980 TGATTGAGGTAGGTTTTAAATTCAAAC 57.025 29.630 5.12 5.12 33.98 2.93
3131 4591 9.810545 TTGAGGTAGGTTTTAAATTCAAACTTG 57.189 29.630 11.18 0.00 34.96 3.16
3132 4592 9.191479 TGAGGTAGGTTTTAAATTCAAACTTGA 57.809 29.630 11.18 0.00 34.96 3.02
3134 4594 9.981114 AGGTAGGTTTTAAATTCAAACTTGATG 57.019 29.630 11.18 0.00 37.00 3.07
3135 4595 9.758651 GGTAGGTTTTAAATTCAAACTTGATGT 57.241 29.630 11.18 0.00 37.00 3.06
3145 4605 8.728088 AATTCAAACTTGATGTTTATGACGTC 57.272 30.769 9.11 9.11 46.11 4.34
3153 4613 5.937187 TGATGTTTATGACGTCATTGTTGG 58.063 37.500 34.06 0.00 46.65 3.77
3154 4614 4.153958 TGTTTATGACGTCATTGTTGGC 57.846 40.909 34.06 18.52 37.76 4.52
3162 4622 2.704725 GTCATTGTTGGCGATTGTGT 57.295 45.000 0.00 0.00 0.00 3.72
3163 4623 2.318578 GTCATTGTTGGCGATTGTGTG 58.681 47.619 0.00 0.00 0.00 3.82
3164 4624 1.062258 CATTGTTGGCGATTGTGTGC 58.938 50.000 0.00 0.00 0.00 4.57
3165 4625 0.672889 ATTGTTGGCGATTGTGTGCA 59.327 45.000 0.00 0.00 0.00 4.57
3166 4626 0.030504 TTGTTGGCGATTGTGTGCAG 59.969 50.000 0.00 0.00 0.00 4.41
3167 4627 1.100463 TGTTGGCGATTGTGTGCAGT 61.100 50.000 0.00 0.00 0.00 4.40
3168 4628 0.030638 GTTGGCGATTGTGTGCAGTT 59.969 50.000 0.00 0.00 0.00 3.16
3169 4629 0.030504 TTGGCGATTGTGTGCAGTTG 59.969 50.000 0.00 0.00 0.00 3.16
3170 4630 1.081242 GGCGATTGTGTGCAGTTGG 60.081 57.895 0.00 0.00 0.00 3.77
3171 4631 1.514678 GGCGATTGTGTGCAGTTGGA 61.515 55.000 0.00 0.00 0.00 3.53
3172 4632 0.523072 GCGATTGTGTGCAGTTGGAT 59.477 50.000 0.00 0.00 0.00 3.41
3173 4633 1.068333 GCGATTGTGTGCAGTTGGATT 60.068 47.619 0.00 0.00 0.00 3.01
3174 4634 2.607771 GCGATTGTGTGCAGTTGGATTT 60.608 45.455 0.00 0.00 0.00 2.17
3175 4635 3.365868 GCGATTGTGTGCAGTTGGATTTA 60.366 43.478 0.00 0.00 0.00 1.40
3176 4636 4.158384 CGATTGTGTGCAGTTGGATTTAC 58.842 43.478 0.00 0.00 0.00 2.01
3177 4637 3.617540 TTGTGTGCAGTTGGATTTACG 57.382 42.857 0.00 0.00 0.00 3.18
3178 4638 2.839975 TGTGTGCAGTTGGATTTACGA 58.160 42.857 0.00 0.00 0.00 3.43
3179 4639 3.407698 TGTGTGCAGTTGGATTTACGAT 58.592 40.909 0.00 0.00 0.00 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 2.281139 TGCCGTGCACAATTCGGA 60.281 55.556 18.64 0.00 46.05 4.55
180 181 9.423061 GGTATGAAAACTTGAAAATTATGCACT 57.577 29.630 0.00 0.00 0.00 4.40
205 207 6.311200 GCTTCAACTTACAAATAATGCCTTGG 59.689 38.462 0.00 0.00 0.00 3.61
364 366 0.464373 AGCCATAGCATTGGTCCACG 60.464 55.000 6.78 0.00 43.56 4.94
407 409 3.116300 CGACAACTGTATTCCCTCGATG 58.884 50.000 0.00 0.00 0.00 3.84
504 510 2.434884 CGGCCGACAAGCTGATGT 60.435 61.111 24.07 0.00 42.00 3.06
662 1112 9.573133 CACTTGAACTCAACTAAAAGTTTCATT 57.427 29.630 0.00 0.00 36.03 2.57
663 1113 8.956426 TCACTTGAACTCAACTAAAAGTTTCAT 58.044 29.630 0.00 0.00 36.03 2.57
664 1114 8.330466 TCACTTGAACTCAACTAAAAGTTTCA 57.670 30.769 0.00 0.00 36.03 2.69
665 1115 9.788960 ATTCACTTGAACTCAACTAAAAGTTTC 57.211 29.630 0.00 0.00 34.88 2.78
672 1122 8.717821 CCGAAATATTCACTTGAACTCAACTAA 58.282 33.333 0.00 0.00 36.80 2.24
673 1123 7.148474 GCCGAAATATTCACTTGAACTCAACTA 60.148 37.037 0.00 0.00 36.80 2.24
674 1124 6.348540 GCCGAAATATTCACTTGAACTCAACT 60.349 38.462 0.00 0.00 36.80 3.16
675 1125 5.795441 GCCGAAATATTCACTTGAACTCAAC 59.205 40.000 0.00 0.00 36.80 3.18
676 1126 5.106317 GGCCGAAATATTCACTTGAACTCAA 60.106 40.000 0.00 0.00 36.80 3.02
677 1127 4.394920 GGCCGAAATATTCACTTGAACTCA 59.605 41.667 0.00 0.00 36.80 3.41
678 1128 4.201920 GGGCCGAAATATTCACTTGAACTC 60.202 45.833 0.00 0.00 36.80 3.01
679 1129 3.694566 GGGCCGAAATATTCACTTGAACT 59.305 43.478 0.00 0.00 36.80 3.01
680 1130 3.694566 AGGGCCGAAATATTCACTTGAAC 59.305 43.478 0.00 0.00 36.80 3.18
681 1131 3.963129 AGGGCCGAAATATTCACTTGAA 58.037 40.909 0.00 0.00 38.56 2.69
682 1132 3.644966 AGGGCCGAAATATTCACTTGA 57.355 42.857 0.00 0.00 0.00 3.02
683 1133 4.423732 CAAAGGGCCGAAATATTCACTTG 58.576 43.478 0.00 0.00 0.00 3.16
684 1134 3.447229 CCAAAGGGCCGAAATATTCACTT 59.553 43.478 0.00 0.00 0.00 3.16
685 1135 3.023832 CCAAAGGGCCGAAATATTCACT 58.976 45.455 0.00 0.00 0.00 3.41
686 1136 3.436700 CCAAAGGGCCGAAATATTCAC 57.563 47.619 0.00 0.00 0.00 3.18
699 1149 2.145536 GTTTGCATTTCAGCCAAAGGG 58.854 47.619 0.00 0.00 37.18 3.95
700 1150 2.803956 CAGTTTGCATTTCAGCCAAAGG 59.196 45.455 0.00 0.00 0.00 3.11
701 1151 2.803956 CCAGTTTGCATTTCAGCCAAAG 59.196 45.455 0.00 0.00 0.00 2.77
702 1152 2.433604 TCCAGTTTGCATTTCAGCCAAA 59.566 40.909 0.00 0.00 0.00 3.28
703 1153 2.037901 TCCAGTTTGCATTTCAGCCAA 58.962 42.857 0.00 0.00 0.00 4.52
704 1154 1.702182 TCCAGTTTGCATTTCAGCCA 58.298 45.000 0.00 0.00 0.00 4.75
705 1155 2.818130 TTCCAGTTTGCATTTCAGCC 57.182 45.000 0.00 0.00 0.00 4.85
706 1156 3.676646 GTGATTCCAGTTTGCATTTCAGC 59.323 43.478 0.00 0.00 0.00 4.26
707 1157 4.240096 GGTGATTCCAGTTTGCATTTCAG 58.760 43.478 0.00 0.00 35.97 3.02
708 1158 3.305267 CGGTGATTCCAGTTTGCATTTCA 60.305 43.478 0.00 0.00 35.57 2.69
709 1159 3.057596 TCGGTGATTCCAGTTTGCATTTC 60.058 43.478 0.00 0.00 35.57 2.17
710 1160 2.890311 TCGGTGATTCCAGTTTGCATTT 59.110 40.909 0.00 0.00 35.57 2.32
711 1161 2.513753 TCGGTGATTCCAGTTTGCATT 58.486 42.857 0.00 0.00 35.57 3.56
712 1162 2.198827 TCGGTGATTCCAGTTTGCAT 57.801 45.000 0.00 0.00 35.57 3.96
713 1163 1.974265 TTCGGTGATTCCAGTTTGCA 58.026 45.000 0.00 0.00 35.57 4.08
714 1164 3.575965 ATTTCGGTGATTCCAGTTTGC 57.424 42.857 0.00 0.00 35.57 3.68
715 1165 4.917415 GTGAATTTCGGTGATTCCAGTTTG 59.083 41.667 0.00 0.00 33.56 2.93
716 1166 4.320202 CGTGAATTTCGGTGATTCCAGTTT 60.320 41.667 0.00 0.00 33.56 2.66
717 1167 3.188460 CGTGAATTTCGGTGATTCCAGTT 59.812 43.478 0.00 0.00 33.56 3.16
718 1168 2.742053 CGTGAATTTCGGTGATTCCAGT 59.258 45.455 0.00 0.00 33.56 4.00
719 1169 2.095853 CCGTGAATTTCGGTGATTCCAG 59.904 50.000 12.74 0.00 42.62 3.86
720 1170 2.080693 CCGTGAATTTCGGTGATTCCA 58.919 47.619 12.74 0.00 42.62 3.53
721 1171 2.825086 CCGTGAATTTCGGTGATTCC 57.175 50.000 12.74 0.00 42.62 3.01
729 1179 3.896122 ACCAAAATCACCGTGAATTTCG 58.104 40.909 10.96 8.06 27.78 3.46
730 1180 5.048294 ACCTACCAAAATCACCGTGAATTTC 60.048 40.000 10.96 0.00 27.78 2.17
731 1181 4.830600 ACCTACCAAAATCACCGTGAATTT 59.169 37.500 5.07 7.03 30.20 1.82
732 1182 4.217550 CACCTACCAAAATCACCGTGAATT 59.782 41.667 5.07 0.00 0.00 2.17
733 1183 3.756434 CACCTACCAAAATCACCGTGAAT 59.244 43.478 5.07 0.00 0.00 2.57
734 1184 3.142951 CACCTACCAAAATCACCGTGAA 58.857 45.455 5.07 0.00 0.00 3.18
735 1185 2.773487 CACCTACCAAAATCACCGTGA 58.227 47.619 3.10 3.10 0.00 4.35
736 1186 1.199097 GCACCTACCAAAATCACCGTG 59.801 52.381 0.00 0.00 0.00 4.94
737 1187 1.073284 AGCACCTACCAAAATCACCGT 59.927 47.619 0.00 0.00 0.00 4.83
738 1188 1.468520 CAGCACCTACCAAAATCACCG 59.531 52.381 0.00 0.00 0.00 4.94
739 1189 2.790433 TCAGCACCTACCAAAATCACC 58.210 47.619 0.00 0.00 0.00 4.02
740 1190 4.846779 TTTCAGCACCTACCAAAATCAC 57.153 40.909 0.00 0.00 0.00 3.06
741 1191 6.418057 AAATTTCAGCACCTACCAAAATCA 57.582 33.333 0.00 0.00 0.00 2.57
742 1192 7.226523 ACAAAAATTTCAGCACCTACCAAAATC 59.773 33.333 0.00 0.00 0.00 2.17
743 1193 7.012232 CACAAAAATTTCAGCACCTACCAAAAT 59.988 33.333 0.00 0.00 0.00 1.82
744 1194 6.314896 CACAAAAATTTCAGCACCTACCAAAA 59.685 34.615 0.00 0.00 0.00 2.44
745 1195 5.814705 CACAAAAATTTCAGCACCTACCAAA 59.185 36.000 0.00 0.00 0.00 3.28
746 1196 5.127845 TCACAAAAATTTCAGCACCTACCAA 59.872 36.000 0.00 0.00 0.00 3.67
747 1197 4.646945 TCACAAAAATTTCAGCACCTACCA 59.353 37.500 0.00 0.00 0.00 3.25
748 1198 5.195001 TCACAAAAATTTCAGCACCTACC 57.805 39.130 0.00 0.00 0.00 3.18
749 1199 6.533367 TGTTTCACAAAAATTTCAGCACCTAC 59.467 34.615 0.00 0.00 0.00 3.18
750 1200 6.634805 TGTTTCACAAAAATTTCAGCACCTA 58.365 32.000 0.00 0.00 0.00 3.08
751 1201 5.486526 TGTTTCACAAAAATTTCAGCACCT 58.513 33.333 0.00 0.00 0.00 4.00
752 1202 5.580297 TCTGTTTCACAAAAATTTCAGCACC 59.420 36.000 0.00 0.00 0.00 5.01
753 1203 6.645700 TCTGTTTCACAAAAATTTCAGCAC 57.354 33.333 0.00 0.00 0.00 4.40
754 1204 7.664082 TTTCTGTTTCACAAAAATTTCAGCA 57.336 28.000 0.00 0.00 0.00 4.41
755 1205 9.002080 CAATTTCTGTTTCACAAAAATTTCAGC 57.998 29.630 0.00 0.00 0.00 4.26
761 1211 9.838975 GGTTTTCAATTTCTGTTTCACAAAAAT 57.161 25.926 0.00 0.00 0.00 1.82
762 1212 8.840321 TGGTTTTCAATTTCTGTTTCACAAAAA 58.160 25.926 0.00 0.00 0.00 1.94
763 1213 8.383318 TGGTTTTCAATTTCTGTTTCACAAAA 57.617 26.923 0.00 0.00 0.00 2.44
764 1214 7.969536 TGGTTTTCAATTTCTGTTTCACAAA 57.030 28.000 0.00 0.00 0.00 2.83
765 1215 7.065563 CCATGGTTTTCAATTTCTGTTTCACAA 59.934 33.333 2.57 0.00 0.00 3.33
766 1216 6.538021 CCATGGTTTTCAATTTCTGTTTCACA 59.462 34.615 2.57 0.00 0.00 3.58
767 1217 6.538381 ACCATGGTTTTCAATTTCTGTTTCAC 59.462 34.615 13.00 0.00 0.00 3.18
768 1218 6.648192 ACCATGGTTTTCAATTTCTGTTTCA 58.352 32.000 13.00 0.00 0.00 2.69
769 1219 6.202762 GGACCATGGTTTTCAATTTCTGTTTC 59.797 38.462 20.85 0.00 0.00 2.78
770 1220 6.054941 GGACCATGGTTTTCAATTTCTGTTT 58.945 36.000 20.85 0.00 0.00 2.83
771 1221 5.366477 AGGACCATGGTTTTCAATTTCTGTT 59.634 36.000 20.85 0.00 0.00 3.16
772 1222 4.901250 AGGACCATGGTTTTCAATTTCTGT 59.099 37.500 20.85 0.00 0.00 3.41
773 1223 5.010922 TCAGGACCATGGTTTTCAATTTCTG 59.989 40.000 20.85 7.77 0.00 3.02
774 1224 5.147032 TCAGGACCATGGTTTTCAATTTCT 58.853 37.500 20.85 0.00 0.00 2.52
775 1225 5.467035 TCAGGACCATGGTTTTCAATTTC 57.533 39.130 20.85 2.00 0.00 2.17
776 1226 5.366477 AGTTCAGGACCATGGTTTTCAATTT 59.634 36.000 20.85 0.00 0.00 1.82
777 1227 4.901250 AGTTCAGGACCATGGTTTTCAATT 59.099 37.500 20.85 4.44 0.00 2.32
778 1228 4.482990 AGTTCAGGACCATGGTTTTCAAT 58.517 39.130 20.85 0.00 0.00 2.57
779 1229 3.909732 AGTTCAGGACCATGGTTTTCAA 58.090 40.909 20.85 7.48 0.00 2.69
780 1230 3.593442 AGTTCAGGACCATGGTTTTCA 57.407 42.857 20.85 0.74 0.00 2.69
798 1248 6.808321 TCCATAAGCTTGTGTAATCCTAGT 57.192 37.500 20.18 0.00 0.00 2.57
816 1269 1.874872 CGACACATGCATGCATCCATA 59.125 47.619 30.07 2.33 33.90 2.74
821 1274 1.378882 GGGACGACACATGCATGCAT 61.379 55.000 27.46 27.46 37.08 3.96
824 1277 2.114670 GGGGGACGACACATGCATG 61.115 63.158 25.09 25.09 0.00 4.06
825 1278 2.135903 TTGGGGGACGACACATGCAT 62.136 55.000 0.00 0.00 0.00 3.96
826 1279 2.823758 TTGGGGGACGACACATGCA 61.824 57.895 0.00 0.00 0.00 3.96
827 1280 2.033448 TTGGGGGACGACACATGC 59.967 61.111 0.00 0.00 0.00 4.06
828 1281 1.674322 GGTTGGGGGACGACACATG 60.674 63.158 0.00 0.00 34.98 3.21
829 1282 0.545787 TAGGTTGGGGGACGACACAT 60.546 55.000 0.00 0.00 34.98 3.21
839 1292 4.301072 TTCTGTGATCTTTAGGTTGGGG 57.699 45.455 0.00 0.00 0.00 4.96
842 1295 5.334105 CCACGTTTCTGTGATCTTTAGGTTG 60.334 44.000 0.00 0.00 42.55 3.77
853 1306 1.444119 GGCAAGCCACGTTTCTGTGA 61.444 55.000 6.14 0.00 42.55 3.58
854 1307 1.008538 GGCAAGCCACGTTTCTGTG 60.009 57.895 6.14 0.00 39.60 3.66
876 1335 2.823829 CGCGGCTAATTGAGGTGGC 61.824 63.158 0.00 0.00 0.00 5.01
877 1336 2.823829 GCGCGGCTAATTGAGGTGG 61.824 63.158 8.83 0.00 0.00 4.61
895 1354 2.433145 ACAGAGCATGGTCACGCG 60.433 61.111 25.71 3.53 0.00 6.01
896 1355 3.031964 GCACAGAGCATGGTCACGC 62.032 63.158 25.71 19.60 44.79 5.34
897 1356 3.171987 GCACAGAGCATGGTCACG 58.828 61.111 25.71 18.12 44.79 4.35
912 1374 4.695993 TTGATCTGTGGCGCGGCA 62.696 61.111 33.04 33.04 0.00 5.69
915 1377 2.806856 GCTCTTGATCTGTGGCGCG 61.807 63.158 0.00 0.00 0.00 6.86
922 1384 1.720316 GATCATCGCGCTCTTGATCTG 59.280 52.381 24.74 6.94 41.52 2.90
1013 1483 3.446873 TGCTTGTTGCTGAGGAAAAGAAA 59.553 39.130 10.84 0.00 43.37 2.52
1152 1625 4.033776 CCTGGCCGGCCAAGAAGA 62.034 66.667 45.17 24.59 46.63 2.87
1178 1651 1.374758 CGAGCAAGGACAGGGTGAC 60.375 63.158 0.00 0.00 0.00 3.67
1208 1681 4.214327 GAAGAGGGCGCGGGAGAG 62.214 72.222 8.83 0.00 0.00 3.20
1269 1751 0.108138 CGCCCAGTTCCTTTCGAGAT 60.108 55.000 0.00 0.00 0.00 2.75
1276 1758 1.003233 GAAGAGCGCCCAGTTCCTT 60.003 57.895 2.29 0.00 0.00 3.36
1278 1760 1.003233 AAGAAGAGCGCCCAGTTCC 60.003 57.895 2.29 0.00 0.00 3.62
1321 1803 4.736896 GACTGGACCACGACGGCC 62.737 72.222 0.00 0.00 39.03 6.13
1437 1926 3.589542 TGGCCAAGAACCAGGGGG 61.590 66.667 0.61 0.00 41.29 5.40
2058 2568 0.895530 CAGGTAGTTCTTCGCCTCCA 59.104 55.000 0.00 0.00 0.00 3.86
2190 3057 3.244146 CCCACTCATGCAAAATGTCCAAA 60.244 43.478 0.00 0.00 0.00 3.28
2198 3065 5.999205 ATACAAATCCCACTCATGCAAAA 57.001 34.783 0.00 0.00 0.00 2.44
2207 3078 6.042093 ACTCGATCACATATACAAATCCCACT 59.958 38.462 0.00 0.00 0.00 4.00
2208 3079 6.223852 ACTCGATCACATATACAAATCCCAC 58.776 40.000 0.00 0.00 0.00 4.61
2217 3088 9.626045 TCAACAATCATACTCGATCACATATAC 57.374 33.333 0.00 0.00 0.00 1.47
2262 3285 4.871557 ACGACAGTGACTAGAGTGATACTC 59.128 45.833 0.00 0.79 45.38 2.59
2282 3322 0.682292 TTGGACACACTGGCATACGA 59.318 50.000 0.00 0.00 0.00 3.43
2283 3323 0.796312 GTTGGACACACTGGCATACG 59.204 55.000 0.00 0.00 0.00 3.06
2285 3325 2.371841 AGAAGTTGGACACACTGGCATA 59.628 45.455 0.00 0.00 0.00 3.14
2286 3326 1.143684 AGAAGTTGGACACACTGGCAT 59.856 47.619 0.00 0.00 0.00 4.40
2329 3384 5.438833 TCATGGCATTCATCTGACATTACA 58.561 37.500 0.00 0.00 42.32 2.41
2330 3385 6.349115 GGATCATGGCATTCATCTGACATTAC 60.349 42.308 13.39 0.00 42.32 1.89
2334 3393 3.137728 AGGATCATGGCATTCATCTGACA 59.862 43.478 13.39 0.00 38.86 3.58
2344 3403 3.580022 TGAATCTCGTAGGATCATGGCAT 59.420 43.478 0.00 0.00 0.00 4.40
2359 3418 1.132588 GCGCGGACACTATGAATCTC 58.867 55.000 8.83 0.00 0.00 2.75
2403 3475 9.974980 AACAAATTGTAAATACTTTTCGGACAT 57.025 25.926 0.00 0.00 0.00 3.06
2468 3544 7.147408 ACAAGCTCCTATCATTTCTCTAACCAT 60.147 37.037 0.00 0.00 0.00 3.55
2469 3545 6.156949 ACAAGCTCCTATCATTTCTCTAACCA 59.843 38.462 0.00 0.00 0.00 3.67
2489 3565 4.708726 ATTGTATTCTCAGCCAACAAGC 57.291 40.909 0.00 0.00 33.90 4.01
2540 3618 2.166664 AGGGACTACTCATCGCAAGTTC 59.833 50.000 0.00 0.00 36.02 3.01
2599 3680 0.895559 CCCAGCCCAACAAGTTCCTC 60.896 60.000 0.00 0.00 0.00 3.71
2694 4154 7.284489 TCAAGTAGGTAATTGCAGTTCTTTTGT 59.716 33.333 0.00 0.00 31.90 2.83
2707 4167 6.100424 CCTCATCCTCCTTCAAGTAGGTAATT 59.900 42.308 0.00 0.00 36.63 1.40
2708 4168 5.604650 CCTCATCCTCCTTCAAGTAGGTAAT 59.395 44.000 0.00 0.00 36.63 1.89
2709 4169 4.962995 CCTCATCCTCCTTCAAGTAGGTAA 59.037 45.833 0.00 0.00 36.63 2.85
2710 4170 4.547671 CCTCATCCTCCTTCAAGTAGGTA 58.452 47.826 0.00 0.00 36.63 3.08
2711 4171 3.379452 CCTCATCCTCCTTCAAGTAGGT 58.621 50.000 0.00 0.00 36.63 3.08
2712 4172 2.703007 CCCTCATCCTCCTTCAAGTAGG 59.297 54.545 0.00 0.00 36.59 3.18
2713 4173 3.640967 CTCCCTCATCCTCCTTCAAGTAG 59.359 52.174 0.00 0.00 0.00 2.57
2714 4174 3.631087 CCTCCCTCATCCTCCTTCAAGTA 60.631 52.174 0.00 0.00 0.00 2.24
2715 4175 2.476199 CTCCCTCATCCTCCTTCAAGT 58.524 52.381 0.00 0.00 0.00 3.16
2718 4178 0.030705 CCCTCCCTCATCCTCCTTCA 60.031 60.000 0.00 0.00 0.00 3.02
2720 4180 1.385206 GCCCTCCCTCATCCTCCTT 60.385 63.158 0.00 0.00 0.00 3.36
2721 4181 2.288643 GCCCTCCCTCATCCTCCT 59.711 66.667 0.00 0.00 0.00 3.69
2722 4182 3.237741 CGCCCTCCCTCATCCTCC 61.238 72.222 0.00 0.00 0.00 4.30
2723 4183 2.123251 TCGCCCTCCCTCATCCTC 60.123 66.667 0.00 0.00 0.00 3.71
2724 4184 2.123077 CTCGCCCTCCCTCATCCT 60.123 66.667 0.00 0.00 0.00 3.24
2725 4185 3.237741 CCTCGCCCTCCCTCATCC 61.238 72.222 0.00 0.00 0.00 3.51
2726 4186 3.934962 GCCTCGCCCTCCCTCATC 61.935 72.222 0.00 0.00 0.00 2.92
2738 4198 4.821589 GGCCTTGTCTCCGCCTCG 62.822 72.222 0.00 0.00 39.70 4.63
2745 4205 4.821589 CTCGGGCGGCCTTGTCTC 62.822 72.222 27.04 0.00 0.00 3.36
2761 4221 4.171103 GTGGTATTCCGGCCGCCT 62.171 66.667 22.85 8.73 36.30 5.52
2786 4246 1.004277 CATACGGCGAAGATCGAGCC 61.004 60.000 16.62 15.95 43.74 4.70
2787 4247 1.004277 CCATACGGCGAAGATCGAGC 61.004 60.000 16.62 0.00 43.74 5.03
2788 4248 0.591659 TCCATACGGCGAAGATCGAG 59.408 55.000 16.62 0.00 43.74 4.04
2789 4249 1.068541 CATCCATACGGCGAAGATCGA 60.069 52.381 16.62 2.30 43.74 3.59
2790 4250 1.340658 CATCCATACGGCGAAGATCG 58.659 55.000 16.62 0.00 43.89 3.69
2791 4251 1.071605 GCATCCATACGGCGAAGATC 58.928 55.000 16.62 1.30 0.00 2.75
2792 4252 3.217242 GCATCCATACGGCGAAGAT 57.783 52.632 16.62 6.90 0.00 2.40
2793 4253 4.750460 GCATCCATACGGCGAAGA 57.250 55.556 16.62 4.50 0.00 2.87
2798 4258 0.388649 CCTCTACGCATCCATACGGC 60.389 60.000 0.00 0.00 0.00 5.68
2799 4259 1.200252 CTCCTCTACGCATCCATACGG 59.800 57.143 0.00 0.00 0.00 4.02
2800 4260 1.880675 ACTCCTCTACGCATCCATACG 59.119 52.381 0.00 0.00 0.00 3.06
2801 4261 2.095668 CGACTCCTCTACGCATCCATAC 60.096 54.545 0.00 0.00 0.00 2.39
2802 4262 2.152016 CGACTCCTCTACGCATCCATA 58.848 52.381 0.00 0.00 0.00 2.74
2803 4263 0.955178 CGACTCCTCTACGCATCCAT 59.045 55.000 0.00 0.00 0.00 3.41
2804 4264 2.405143 CGACTCCTCTACGCATCCA 58.595 57.895 0.00 0.00 0.00 3.41
2810 4270 1.300481 TCAGATGCGACTCCTCTACG 58.700 55.000 0.00 0.00 0.00 3.51
2811 4271 2.227865 GGATCAGATGCGACTCCTCTAC 59.772 54.545 0.00 0.00 0.00 2.59
2812 4272 2.509569 GGATCAGATGCGACTCCTCTA 58.490 52.381 0.00 0.00 0.00 2.43
2813 4273 1.327303 GGATCAGATGCGACTCCTCT 58.673 55.000 0.00 0.00 0.00 3.69
2814 4274 3.883997 GGATCAGATGCGACTCCTC 57.116 57.895 0.00 0.00 0.00 3.71
2822 4282 2.755542 ATCGCGGACGGATCAGATGC 62.756 60.000 6.13 0.00 40.63 3.91
2823 4283 0.730834 GATCGCGGACGGATCAGATG 60.731 60.000 6.13 0.00 40.63 2.90
2824 4284 0.891449 AGATCGCGGACGGATCAGAT 60.891 55.000 6.13 0.00 40.63 2.90
2825 4285 1.507974 GAGATCGCGGACGGATCAGA 61.508 60.000 6.13 0.00 40.63 3.27
2826 4286 1.081774 GAGATCGCGGACGGATCAG 60.082 63.158 6.13 0.00 40.63 2.90
2827 4287 2.552819 GGAGATCGCGGACGGATCA 61.553 63.158 6.13 0.00 40.63 2.92
2828 4288 2.255856 GGAGATCGCGGACGGATC 59.744 66.667 6.13 0.61 40.63 3.36
2829 4289 3.296054 GGGAGATCGCGGACGGAT 61.296 66.667 6.13 0.00 40.63 4.18
2830 4290 4.807631 TGGGAGATCGCGGACGGA 62.808 66.667 6.13 0.00 40.63 4.69
2831 4291 1.802337 TATTGGGAGATCGCGGACGG 61.802 60.000 6.13 0.00 40.63 4.79
2832 4292 0.031585 TTATTGGGAGATCGCGGACG 59.968 55.000 6.13 0.00 42.01 4.79
2833 4293 1.499049 GTTATTGGGAGATCGCGGAC 58.501 55.000 6.13 0.00 0.00 4.79
2834 4294 0.391597 GGTTATTGGGAGATCGCGGA 59.608 55.000 6.13 0.00 0.00 5.54
2835 4295 0.393077 AGGTTATTGGGAGATCGCGG 59.607 55.000 6.13 0.00 0.00 6.46
2836 4296 1.784525 GAGGTTATTGGGAGATCGCG 58.215 55.000 0.00 0.00 0.00 5.87
2837 4297 1.784525 CGAGGTTATTGGGAGATCGC 58.215 55.000 0.00 0.00 0.00 4.58
2838 4298 1.784525 GCGAGGTTATTGGGAGATCG 58.215 55.000 0.00 0.00 0.00 3.69
2839 4299 1.784525 CGCGAGGTTATTGGGAGATC 58.215 55.000 0.00 0.00 0.00 2.75
2840 4300 3.989104 CGCGAGGTTATTGGGAGAT 57.011 52.632 0.00 0.00 0.00 2.75
2860 4320 3.323758 TTTCCTCCCGATGGCACCG 62.324 63.158 0.00 0.00 0.00 4.94
2861 4321 1.452108 CTTTCCTCCCGATGGCACC 60.452 63.158 0.00 0.00 0.00 5.01
2862 4322 1.452108 CCTTTCCTCCCGATGGCAC 60.452 63.158 0.00 0.00 0.00 5.01
2863 4323 1.923395 ACCTTTCCTCCCGATGGCA 60.923 57.895 0.00 0.00 0.00 4.92
2864 4324 1.452108 CACCTTTCCTCCCGATGGC 60.452 63.158 0.00 0.00 0.00 4.40
2865 4325 1.224592 CCACCTTTCCTCCCGATGG 59.775 63.158 0.00 0.00 0.00 3.51
2866 4326 1.224592 CCCACCTTTCCTCCCGATG 59.775 63.158 0.00 0.00 0.00 3.84
2867 4327 2.001269 CCCCACCTTTCCTCCCGAT 61.001 63.158 0.00 0.00 0.00 4.18
2868 4328 2.609610 CCCCACCTTTCCTCCCGA 60.610 66.667 0.00 0.00 0.00 5.14
2869 4329 2.933834 ACCCCACCTTTCCTCCCG 60.934 66.667 0.00 0.00 0.00 5.14
2870 4330 2.967946 CGACCCCACCTTTCCTCCC 61.968 68.421 0.00 0.00 0.00 4.30
2871 4331 1.916777 TCGACCCCACCTTTCCTCC 60.917 63.158 0.00 0.00 0.00 4.30
2872 4332 1.295746 GTCGACCCCACCTTTCCTC 59.704 63.158 3.51 0.00 0.00 3.71
2873 4333 2.580601 CGTCGACCCCACCTTTCCT 61.581 63.158 10.58 0.00 0.00 3.36
2874 4334 2.047560 CGTCGACCCCACCTTTCC 60.048 66.667 10.58 0.00 0.00 3.13
2875 4335 1.080025 CTCGTCGACCCCACCTTTC 60.080 63.158 10.58 0.00 0.00 2.62
2876 4336 0.903454 ATCTCGTCGACCCCACCTTT 60.903 55.000 10.58 0.00 0.00 3.11
2877 4337 1.305046 ATCTCGTCGACCCCACCTT 60.305 57.895 10.58 0.00 0.00 3.50
2878 4338 1.753463 GATCTCGTCGACCCCACCT 60.753 63.158 10.58 0.00 0.00 4.00
2879 4339 2.806237 GATCTCGTCGACCCCACC 59.194 66.667 10.58 0.00 0.00 4.61
2888 4348 3.515286 TCACCGCCCGATCTCGTC 61.515 66.667 0.00 0.00 37.74 4.20
2889 4349 3.823330 GTCACCGCCCGATCTCGT 61.823 66.667 0.00 0.00 37.74 4.18
2890 4350 4.570663 GGTCACCGCCCGATCTCG 62.571 72.222 0.00 0.00 39.44 4.04
2901 4361 1.134560 GGACTGATCACTACGGTCACC 59.865 57.143 12.51 0.00 43.10 4.02
2902 4362 1.134560 GGGACTGATCACTACGGTCAC 59.865 57.143 12.51 6.48 43.10 3.67
2903 4363 1.272258 TGGGACTGATCACTACGGTCA 60.272 52.381 12.51 0.00 43.10 4.02
2904 4364 1.134560 GTGGGACTGATCACTACGGTC 59.865 57.143 0.00 0.00 41.32 4.79
2905 4365 1.183549 GTGGGACTGATCACTACGGT 58.816 55.000 0.00 0.00 0.00 4.83
2906 4366 0.100682 CGTGGGACTGATCACTACGG 59.899 60.000 11.36 0.00 32.51 4.02
2907 4367 0.100682 CCGTGGGACTGATCACTACG 59.899 60.000 12.02 12.02 34.53 3.51
2908 4368 0.179108 GCCGTGGGACTGATCACTAC 60.179 60.000 0.00 0.00 0.00 2.73
2909 4369 1.663379 CGCCGTGGGACTGATCACTA 61.663 60.000 0.00 0.00 0.00 2.74
2910 4370 2.982130 GCCGTGGGACTGATCACT 59.018 61.111 0.00 0.00 0.00 3.41
2911 4371 2.509336 CGCCGTGGGACTGATCAC 60.509 66.667 0.00 0.00 0.00 3.06
2912 4372 2.678580 TCGCCGTGGGACTGATCA 60.679 61.111 0.00 0.00 0.00 2.92
2913 4373 1.739338 ATCTCGCCGTGGGACTGATC 61.739 60.000 0.00 0.00 0.00 2.92
2914 4374 1.739338 GATCTCGCCGTGGGACTGAT 61.739 60.000 0.00 0.00 0.00 2.90
2915 4375 2.362503 ATCTCGCCGTGGGACTGA 60.363 61.111 0.00 0.00 0.00 3.41
2916 4376 2.105128 GATCTCGCCGTGGGACTG 59.895 66.667 0.00 0.00 0.00 3.51
2917 4377 3.148279 GGATCTCGCCGTGGGACT 61.148 66.667 0.00 0.00 0.00 3.85
2918 4378 3.014085 TTGGATCTCGCCGTGGGAC 62.014 63.158 0.00 0.00 0.00 4.46
2919 4379 2.682136 TTGGATCTCGCCGTGGGA 60.682 61.111 0.00 0.00 0.00 4.37
2920 4380 2.511600 GTTGGATCTCGCCGTGGG 60.512 66.667 0.00 0.00 0.00 4.61
2921 4381 1.811266 CTGTTGGATCTCGCCGTGG 60.811 63.158 0.00 0.00 0.00 4.94
2922 4382 1.811266 CCTGTTGGATCTCGCCGTG 60.811 63.158 0.00 0.00 34.57 4.94
2923 4383 1.949847 CTCCTGTTGGATCTCGCCGT 61.950 60.000 0.00 0.00 42.29 5.68
2924 4384 1.227089 CTCCTGTTGGATCTCGCCG 60.227 63.158 0.00 0.00 42.29 6.46
2925 4385 1.144936 CCTCCTGTTGGATCTCGCC 59.855 63.158 0.00 0.00 42.29 5.54
2926 4386 0.537188 TTCCTCCTGTTGGATCTCGC 59.463 55.000 0.00 0.00 42.29 5.03
2927 4387 2.103373 TCTTCCTCCTGTTGGATCTCG 58.897 52.381 0.00 0.00 42.29 4.04
2928 4388 3.677424 CGTTCTTCCTCCTGTTGGATCTC 60.677 52.174 0.00 0.00 42.29 2.75
2929 4389 2.234908 CGTTCTTCCTCCTGTTGGATCT 59.765 50.000 0.00 0.00 42.29 2.75
2930 4390 2.028020 ACGTTCTTCCTCCTGTTGGATC 60.028 50.000 0.00 0.00 42.29 3.36
2931 4391 1.978580 ACGTTCTTCCTCCTGTTGGAT 59.021 47.619 0.00 0.00 42.29 3.41
2932 4392 1.070134 CACGTTCTTCCTCCTGTTGGA 59.930 52.381 0.00 0.00 40.69 3.53
2933 4393 1.202651 ACACGTTCTTCCTCCTGTTGG 60.203 52.381 0.00 0.00 0.00 3.77
2934 4394 1.867233 CACACGTTCTTCCTCCTGTTG 59.133 52.381 0.00 0.00 0.00 3.33
2935 4395 1.810412 GCACACGTTCTTCCTCCTGTT 60.810 52.381 0.00 0.00 0.00 3.16
2936 4396 0.249911 GCACACGTTCTTCCTCCTGT 60.250 55.000 0.00 0.00 0.00 4.00
2937 4397 0.249868 TGCACACGTTCTTCCTCCTG 60.250 55.000 0.00 0.00 0.00 3.86
2938 4398 0.249911 GTGCACACGTTCTTCCTCCT 60.250 55.000 13.17 0.00 0.00 3.69
2939 4399 0.531974 TGTGCACACGTTCTTCCTCC 60.532 55.000 17.42 0.00 0.00 4.30
2940 4400 1.295792 TTGTGCACACGTTCTTCCTC 58.704 50.000 21.56 0.00 0.00 3.71
2941 4401 1.603802 CATTGTGCACACGTTCTTCCT 59.396 47.619 21.56 0.00 0.00 3.36
2942 4402 1.334960 CCATTGTGCACACGTTCTTCC 60.335 52.381 21.56 0.00 0.00 3.46
2943 4403 1.925946 GCCATTGTGCACACGTTCTTC 60.926 52.381 21.56 1.44 0.00 2.87
2944 4404 0.030638 GCCATTGTGCACACGTTCTT 59.969 50.000 21.56 0.00 0.00 2.52
2945 4405 1.100463 TGCCATTGTGCACACGTTCT 61.100 50.000 21.56 0.00 36.04 3.01
2946 4406 0.661187 CTGCCATTGTGCACACGTTC 60.661 55.000 21.56 10.06 36.04 3.95
2947 4407 1.359833 CTGCCATTGTGCACACGTT 59.640 52.632 21.56 4.50 36.04 3.99
2948 4408 2.554636 CCTGCCATTGTGCACACGT 61.555 57.895 21.56 8.73 36.04 4.49
2949 4409 2.256158 CCTGCCATTGTGCACACG 59.744 61.111 21.56 13.83 36.04 4.49
2950 4410 2.048877 GCCTGCCATTGTGCACAC 60.049 61.111 21.56 8.79 36.04 3.82
2951 4411 3.672447 CGCCTGCCATTGTGCACA 61.672 61.111 17.42 17.42 36.04 4.57
2952 4412 2.603135 GATCGCCTGCCATTGTGCAC 62.603 60.000 10.75 10.75 36.04 4.57
2953 4413 2.361483 ATCGCCTGCCATTGTGCA 60.361 55.556 0.00 0.00 39.37 4.57
2954 4414 1.660560 AAGATCGCCTGCCATTGTGC 61.661 55.000 0.00 0.00 0.00 4.57
2955 4415 0.379669 GAAGATCGCCTGCCATTGTG 59.620 55.000 0.00 0.00 0.00 3.33
2956 4416 0.254178 AGAAGATCGCCTGCCATTGT 59.746 50.000 0.00 0.00 0.00 2.71
2957 4417 0.942962 GAGAAGATCGCCTGCCATTG 59.057 55.000 0.00 0.00 0.00 2.82
2958 4418 0.179034 GGAGAAGATCGCCTGCCATT 60.179 55.000 0.00 0.00 33.25 3.16
2959 4419 1.449353 GGAGAAGATCGCCTGCCAT 59.551 57.895 0.00 0.00 33.25 4.40
2960 4420 2.903357 GGAGAAGATCGCCTGCCA 59.097 61.111 0.00 0.00 33.25 4.92
2961 4421 2.279784 CGGAGAAGATCGCCTGCC 60.280 66.667 0.00 0.00 33.90 4.85
2962 4422 1.590259 GTCGGAGAAGATCGCCTGC 60.590 63.158 0.00 0.00 39.69 4.85
2963 4423 1.298713 CGTCGGAGAAGATCGCCTG 60.299 63.158 0.00 0.00 38.59 4.85
2964 4424 1.440938 CTCGTCGGAGAAGATCGCCT 61.441 60.000 0.00 0.00 45.13 5.52
2965 4425 1.009449 CTCGTCGGAGAAGATCGCC 60.009 63.158 0.00 0.00 45.13 5.54
2966 4426 2.015382 TCTCGTCGGAGAAGATCGC 58.985 57.895 0.00 0.00 45.13 4.58
2977 4437 3.950254 CCCGGATCCGTCTCGTCG 61.950 72.222 31.22 14.67 37.81 5.12
2978 4438 4.267503 GCCCGGATCCGTCTCGTC 62.268 72.222 31.22 10.49 37.81 4.20
2986 4446 3.234730 ATCCAGACGCCCGGATCC 61.235 66.667 0.73 0.00 37.46 3.36
2988 4448 3.606662 CGATCCAGACGCCCGGAT 61.607 66.667 0.73 0.01 44.89 4.18
2989 4449 4.807631 TCGATCCAGACGCCCGGA 62.808 66.667 0.73 0.00 35.27 5.14
2990 4450 3.774959 CTTCGATCCAGACGCCCGG 62.775 68.421 0.00 0.00 0.00 5.73
2991 4451 2.278857 CTTCGATCCAGACGCCCG 60.279 66.667 0.00 0.00 0.00 6.13
2992 4452 2.107141 CCTTCGATCCAGACGCCC 59.893 66.667 0.00 0.00 0.00 6.13
2993 4453 2.107141 CCCTTCGATCCAGACGCC 59.893 66.667 0.00 0.00 0.00 5.68
2994 4454 1.066587 CTCCCTTCGATCCAGACGC 59.933 63.158 0.00 0.00 0.00 5.19
2995 4455 1.736586 CCTCCCTTCGATCCAGACG 59.263 63.158 0.00 0.00 0.00 4.18
2996 4456 1.045911 AGCCTCCCTTCGATCCAGAC 61.046 60.000 0.00 0.00 0.00 3.51
2997 4457 0.325671 AAGCCTCCCTTCGATCCAGA 60.326 55.000 0.00 0.00 0.00 3.86
2998 4458 0.105778 GAAGCCTCCCTTCGATCCAG 59.894 60.000 0.00 0.00 40.49 3.86
2999 4459 2.212327 GAAGCCTCCCTTCGATCCA 58.788 57.895 0.00 0.00 40.49 3.41
3005 4465 1.066143 TGTGAATCGAAGCCTCCCTTC 60.066 52.381 0.00 0.00 45.26 3.46
3006 4466 0.984230 TGTGAATCGAAGCCTCCCTT 59.016 50.000 0.00 0.00 36.19 3.95
3007 4467 0.250513 GTGTGAATCGAAGCCTCCCT 59.749 55.000 0.00 0.00 0.00 4.20
3008 4468 0.744771 GGTGTGAATCGAAGCCTCCC 60.745 60.000 0.00 0.00 0.00 4.30
3009 4469 1.084370 CGGTGTGAATCGAAGCCTCC 61.084 60.000 0.00 0.00 0.00 4.30
3010 4470 1.696832 GCGGTGTGAATCGAAGCCTC 61.697 60.000 0.00 0.00 0.00 4.70
3011 4471 1.741770 GCGGTGTGAATCGAAGCCT 60.742 57.895 0.00 0.00 0.00 4.58
3012 4472 1.369091 ATGCGGTGTGAATCGAAGCC 61.369 55.000 0.00 0.00 0.00 4.35
3013 4473 0.447801 AATGCGGTGTGAATCGAAGC 59.552 50.000 0.00 0.00 0.00 3.86
3014 4474 1.267038 CGAATGCGGTGTGAATCGAAG 60.267 52.381 0.00 0.00 32.38 3.79
3015 4475 0.718904 CGAATGCGGTGTGAATCGAA 59.281 50.000 0.00 0.00 32.38 3.71
3016 4476 1.692148 GCGAATGCGGTGTGAATCGA 61.692 55.000 0.00 0.00 38.16 3.59
3017 4477 1.296867 GCGAATGCGGTGTGAATCG 60.297 57.895 0.00 0.00 38.16 3.34
3018 4478 4.670606 GCGAATGCGGTGTGAATC 57.329 55.556 0.00 0.00 38.16 2.52
3034 4494 3.909086 AAGAAGAGCCAGCCACCGC 62.909 63.158 0.00 0.00 0.00 5.68
3035 4495 2.037136 CAAGAAGAGCCAGCCACCG 61.037 63.158 0.00 0.00 0.00 4.94
3036 4496 0.034670 ATCAAGAAGAGCCAGCCACC 60.035 55.000 0.00 0.00 0.00 4.61
3037 4497 1.065564 AGATCAAGAAGAGCCAGCCAC 60.066 52.381 0.00 0.00 31.44 5.01
3038 4498 1.065636 CAGATCAAGAAGAGCCAGCCA 60.066 52.381 0.00 0.00 31.44 4.75
3039 4499 1.666054 CAGATCAAGAAGAGCCAGCC 58.334 55.000 0.00 0.00 31.44 4.85
3040 4500 1.209019 TCCAGATCAAGAAGAGCCAGC 59.791 52.381 0.00 0.00 31.44 4.85
3041 4501 2.765135 TCTCCAGATCAAGAAGAGCCAG 59.235 50.000 0.00 0.00 31.44 4.85
3042 4502 2.825223 TCTCCAGATCAAGAAGAGCCA 58.175 47.619 0.00 0.00 31.44 4.75
3043 4503 3.530535 GTTCTCCAGATCAAGAAGAGCC 58.469 50.000 0.00 0.00 32.40 4.70
3044 4504 3.119316 TCGTTCTCCAGATCAAGAAGAGC 60.119 47.826 0.00 0.00 32.40 4.09
3045 4505 4.082517 TGTCGTTCTCCAGATCAAGAAGAG 60.083 45.833 0.00 0.00 32.40 2.85
3046 4506 3.826729 TGTCGTTCTCCAGATCAAGAAGA 59.173 43.478 0.00 0.00 32.40 2.87
3047 4507 4.179926 TGTCGTTCTCCAGATCAAGAAG 57.820 45.455 0.00 0.00 32.40 2.85
3048 4508 4.382040 GGATGTCGTTCTCCAGATCAAGAA 60.382 45.833 0.00 0.00 0.00 2.52
3049 4509 3.131223 GGATGTCGTTCTCCAGATCAAGA 59.869 47.826 0.00 0.00 0.00 3.02
3050 4510 3.131933 AGGATGTCGTTCTCCAGATCAAG 59.868 47.826 0.00 0.00 33.75 3.02
3051 4511 3.099905 AGGATGTCGTTCTCCAGATCAA 58.900 45.455 0.00 0.00 33.75 2.57
3052 4512 2.690497 GAGGATGTCGTTCTCCAGATCA 59.310 50.000 0.00 0.00 33.75 2.92
3053 4513 2.287308 CGAGGATGTCGTTCTCCAGATC 60.287 54.545 0.00 0.00 44.20 2.75
3054 4514 1.678627 CGAGGATGTCGTTCTCCAGAT 59.321 52.381 0.00 0.00 44.20 2.90
3055 4515 1.095600 CGAGGATGTCGTTCTCCAGA 58.904 55.000 0.00 0.00 44.20 3.86
3056 4516 3.631714 CGAGGATGTCGTTCTCCAG 57.368 57.895 0.00 0.00 44.20 3.86
3072 4532 2.256591 GGTAGATAGTCGCCGGCGA 61.257 63.158 45.37 45.37 46.87 5.54
3073 4533 2.254651 GGTAGATAGTCGCCGGCG 59.745 66.667 42.13 42.13 41.35 6.46
3074 4534 2.649614 GGGTAGATAGTCGCCGGC 59.350 66.667 19.07 19.07 0.00 6.13
3075 4535 1.598962 TCGGGTAGATAGTCGCCGG 60.599 63.158 0.00 0.00 0.00 6.13
3076 4536 1.573436 GTCGGGTAGATAGTCGCCG 59.427 63.158 0.00 0.00 0.00 6.46
3077 4537 1.573436 CGTCGGGTAGATAGTCGCC 59.427 63.158 0.00 0.00 0.00 5.54
3082 4542 2.251409 TGTCTCCGTCGGGTAGATAG 57.749 55.000 12.29 0.00 33.83 2.08
3086 4546 1.319541 ATCATGTCTCCGTCGGGTAG 58.680 55.000 12.29 2.12 33.83 3.18
3087 4547 1.407618 CAATCATGTCTCCGTCGGGTA 59.592 52.381 12.29 0.00 33.83 3.69
3089 4549 0.459899 TCAATCATGTCTCCGTCGGG 59.540 55.000 12.29 2.17 0.00 5.14
3092 4552 2.969628 ACCTCAATCATGTCTCCGTC 57.030 50.000 0.00 0.00 0.00 4.79
3093 4553 2.695666 CCTACCTCAATCATGTCTCCGT 59.304 50.000 0.00 0.00 0.00 4.69
3094 4554 2.695666 ACCTACCTCAATCATGTCTCCG 59.304 50.000 0.00 0.00 0.00 4.63
3096 4556 8.561738 TTTAAAACCTACCTCAATCATGTCTC 57.438 34.615 0.00 0.00 0.00 3.36
3108 4568 9.981114 CATCAAGTTTGAATTTAAAACCTACCT 57.019 29.630 5.85 0.00 41.13 3.08
3126 4586 7.202016 ACAATGACGTCATAAACATCAAGTT 57.798 32.000 30.16 9.03 33.11 2.66
3127 4587 6.801539 ACAATGACGTCATAAACATCAAGT 57.198 33.333 30.16 14.27 33.11 3.16
3128 4588 6.524239 CCAACAATGACGTCATAAACATCAAG 59.476 38.462 30.16 13.73 33.11 3.02
3129 4589 6.377780 CCAACAATGACGTCATAAACATCAA 58.622 36.000 30.16 0.00 33.11 2.57
3130 4590 5.618863 GCCAACAATGACGTCATAAACATCA 60.619 40.000 30.16 0.26 34.05 3.07
3131 4591 4.793216 GCCAACAATGACGTCATAAACATC 59.207 41.667 30.16 14.92 35.10 3.06
3132 4592 4.671508 CGCCAACAATGACGTCATAAACAT 60.672 41.667 30.16 12.55 35.10 2.71
3133 4593 3.364465 CGCCAACAATGACGTCATAAACA 60.364 43.478 30.16 2.75 35.10 2.83
3134 4594 3.120477 TCGCCAACAATGACGTCATAAAC 60.120 43.478 30.16 15.46 35.10 2.01
3135 4595 3.067833 TCGCCAACAATGACGTCATAAA 58.932 40.909 30.16 3.26 35.10 1.40
3136 4596 2.689646 TCGCCAACAATGACGTCATAA 58.310 42.857 30.16 3.68 35.10 1.90
3137 4597 2.371910 TCGCCAACAATGACGTCATA 57.628 45.000 30.16 10.28 35.10 2.15
3138 4598 1.737838 ATCGCCAACAATGACGTCAT 58.262 45.000 25.18 25.18 38.41 3.06
3139 4599 1.196581 CAATCGCCAACAATGACGTCA 59.803 47.619 22.48 22.48 33.78 4.35
3140 4600 1.196808 ACAATCGCCAACAATGACGTC 59.803 47.619 9.11 9.11 33.78 4.34
3141 4601 1.069296 CACAATCGCCAACAATGACGT 60.069 47.619 0.00 0.00 33.78 4.34
3142 4602 1.069296 ACACAATCGCCAACAATGACG 60.069 47.619 0.00 0.00 33.30 4.35
3143 4603 2.318578 CACACAATCGCCAACAATGAC 58.681 47.619 0.00 0.00 0.00 3.06
3144 4604 1.335780 GCACACAATCGCCAACAATGA 60.336 47.619 0.00 0.00 0.00 2.57
3145 4605 1.062258 GCACACAATCGCCAACAATG 58.938 50.000 0.00 0.00 0.00 2.82
3146 4606 0.672889 TGCACACAATCGCCAACAAT 59.327 45.000 0.00 0.00 0.00 2.71
3147 4607 0.030504 CTGCACACAATCGCCAACAA 59.969 50.000 0.00 0.00 0.00 2.83
3148 4608 1.100463 ACTGCACACAATCGCCAACA 61.100 50.000 0.00 0.00 0.00 3.33
3149 4609 0.030638 AACTGCACACAATCGCCAAC 59.969 50.000 0.00 0.00 0.00 3.77
3150 4610 0.030504 CAACTGCACACAATCGCCAA 59.969 50.000 0.00 0.00 0.00 4.52
3151 4611 1.653667 CAACTGCACACAATCGCCA 59.346 52.632 0.00 0.00 0.00 5.69
3152 4612 1.081242 CCAACTGCACACAATCGCC 60.081 57.895 0.00 0.00 0.00 5.54
3153 4613 0.523072 ATCCAACTGCACACAATCGC 59.477 50.000 0.00 0.00 0.00 4.58
3154 4614 2.995466 AATCCAACTGCACACAATCG 57.005 45.000 0.00 0.00 0.00 3.34
3155 4615 4.083537 TCGTAAATCCAACTGCACACAATC 60.084 41.667 0.00 0.00 0.00 2.67
3156 4616 3.818210 TCGTAAATCCAACTGCACACAAT 59.182 39.130 0.00 0.00 0.00 2.71
3157 4617 3.206964 TCGTAAATCCAACTGCACACAA 58.793 40.909 0.00 0.00 0.00 3.33
3158 4618 2.839975 TCGTAAATCCAACTGCACACA 58.160 42.857 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.