Multiple sequence alignment - TraesCS7D01G462300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G462300 chr7D 100.000 2636 0 0 1 2636 577982576 577985211 0.000000e+00 4868
1 TraesCS7D01G462300 chr7D 88.629 897 88 11 2 894 233651545 233652431 0.000000e+00 1079
2 TraesCS7D01G462300 chr7D 100.000 314 0 0 3109 3422 577985684 577985997 6.370000e-162 580
3 TraesCS7D01G462300 chr7D 97.452 314 8 0 3109 3422 83457729 83458042 1.400000e-148 536
4 TraesCS7D01G462300 chr7D 97.452 314 8 0 3109 3422 524541564 524541877 1.400000e-148 536
5 TraesCS7D01G462300 chr7D 87.465 359 33 5 1950 2308 578040799 578041145 1.480000e-108 403
6 TraesCS7D01G462300 chr7D 93.902 82 5 0 1867 1948 577781776 577781695 1.290000e-24 124
7 TraesCS7D01G462300 chr4D 92.540 1059 66 7 1 1048 58385555 58384499 0.000000e+00 1506
8 TraesCS7D01G462300 chr4D 91.863 1020 63 7 34 1049 401069872 401068869 0.000000e+00 1406
9 TraesCS7D01G462300 chr4D 87.149 996 117 11 58 1046 294006889 294007880 0.000000e+00 1120
10 TraesCS7D01G462300 chr5A 91.651 1042 86 1 1 1042 463521476 463520436 0.000000e+00 1441
11 TraesCS7D01G462300 chr5A 94.904 314 16 0 3109 3422 76962379 76962066 3.070000e-135 492
12 TraesCS7D01G462300 chr2D 91.406 1024 77 8 1 1023 562833148 562832135 0.000000e+00 1393
13 TraesCS7D01G462300 chr2D 97.134 314 9 0 3109 3422 563098275 563097962 6.500000e-147 531
14 TraesCS7D01G462300 chr3A 90.718 1045 89 8 1 1042 338346057 338345018 0.000000e+00 1386
15 TraesCS7D01G462300 chr2A 92.316 963 71 3 1 961 739184042 739183081 0.000000e+00 1365
16 TraesCS7D01G462300 chr5D 95.714 840 34 2 1 840 9499964 9500801 0.000000e+00 1351
17 TraesCS7D01G462300 chr5D 96.497 314 9 2 3109 3422 174797002 174797313 5.060000e-143 518
18 TraesCS7D01G462300 chr3D 97.134 314 8 1 3109 3422 173700516 173700828 2.340000e-146 529
19 TraesCS7D01G462300 chr3D 96.203 79 3 0 1870 1948 55188706 55188784 2.770000e-26 130
20 TraesCS7D01G462300 chr5B 95.541 314 14 0 3109 3422 638794913 638795226 1.420000e-138 503
21 TraesCS7D01G462300 chr5B 94.175 309 18 0 3113 3421 37593946 37594254 4.000000e-129 472
22 TraesCS7D01G462300 chr1B 94.586 314 16 1 3109 3422 41989829 41990141 5.130000e-133 484
23 TraesCS7D01G462300 chr7A 91.166 283 22 3 1404 1683 670296445 670296163 6.930000e-102 381
24 TraesCS7D01G462300 chr7A 91.241 137 7 2 2488 2619 670295843 670295707 7.540000e-42 182
25 TraesCS7D01G462300 chr7A 88.889 153 8 2 2288 2440 670296164 670296021 2.710000e-41 180
26 TraesCS7D01G462300 chr7A 92.708 96 4 2 1068 1163 670296854 670296762 5.960000e-28 135
27 TraesCS7D01G462300 chr7A 94.937 79 4 0 1870 1948 670172388 670172466 1.290000e-24 124
28 TraesCS7D01G462300 chr7B 87.952 249 13 6 1059 1299 641553462 641553701 9.350000e-71 278
29 TraesCS7D01G462300 chr7B 85.714 210 18 3 2099 2308 641878508 641878311 9.620000e-51 211
30 TraesCS7D01G462300 chr7B 74.449 454 81 24 1870 2308 642063258 642062825 2.730000e-36 163
31 TraesCS7D01G462300 chr7B 96.203 79 3 0 1870 1948 641375028 641375106 2.770000e-26 130
32 TraesCS7D01G462300 chr7B 93.902 82 5 0 1867 1948 641604105 641604186 1.290000e-24 124
33 TraesCS7D01G462300 chr7B 94.937 79 4 0 1870 1948 641729808 641729730 1.290000e-24 124
34 TraesCS7D01G462300 chr2B 83.333 156 26 0 888 1043 451897210 451897365 9.900000e-31 145
35 TraesCS7D01G462300 chrUn 87.255 102 13 0 1979 2080 91512331 91512432 2.160000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G462300 chr7D 577982576 577985997 3421 False 2724.0 4868 100.000 1 3422 2 chr7D.!!$F5 3421
1 TraesCS7D01G462300 chr7D 233651545 233652431 886 False 1079.0 1079 88.629 2 894 1 chr7D.!!$F2 892
2 TraesCS7D01G462300 chr4D 58384499 58385555 1056 True 1506.0 1506 92.540 1 1048 1 chr4D.!!$R1 1047
3 TraesCS7D01G462300 chr4D 401068869 401069872 1003 True 1406.0 1406 91.863 34 1049 1 chr4D.!!$R2 1015
4 TraesCS7D01G462300 chr4D 294006889 294007880 991 False 1120.0 1120 87.149 58 1046 1 chr4D.!!$F1 988
5 TraesCS7D01G462300 chr5A 463520436 463521476 1040 True 1441.0 1441 91.651 1 1042 1 chr5A.!!$R2 1041
6 TraesCS7D01G462300 chr2D 562832135 562833148 1013 True 1393.0 1393 91.406 1 1023 1 chr2D.!!$R1 1022
7 TraesCS7D01G462300 chr3A 338345018 338346057 1039 True 1386.0 1386 90.718 1 1042 1 chr3A.!!$R1 1041
8 TraesCS7D01G462300 chr2A 739183081 739184042 961 True 1365.0 1365 92.316 1 961 1 chr2A.!!$R1 960
9 TraesCS7D01G462300 chr5D 9499964 9500801 837 False 1351.0 1351 95.714 1 840 1 chr5D.!!$F1 839
10 TraesCS7D01G462300 chr7A 670295707 670296854 1147 True 219.5 381 91.001 1068 2619 4 chr7A.!!$R1 1551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 869 0.389948 CTCCCGTTTTCTCCTCGTGG 60.390 60.0 0.0 0.0 0.0 4.94 F
1656 1798 0.037326 TCGTGCTCACCATGTCCTTC 60.037 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2207 2349 0.036483 CATCACATCGTGGACCACCA 60.036 55.0 19.11 6.73 44.76 4.17 R
3295 3572 0.179097 GATCTGGCAGTCGGACCTTC 60.179 60.0 15.27 0.00 32.83 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 0.675633 CAAAGACAGTGGGCAAAGGG 59.324 55.000 0.00 0.00 0.00 3.95
402 411 1.153823 CGAGAGAAACCACGCCGAT 60.154 57.895 0.00 0.00 0.00 4.18
419 428 6.645415 CACGCCGATTAGAGGAATAATTAAGT 59.355 38.462 0.00 0.00 0.00 2.24
503 512 2.222663 CGTCTACGATCGTCGAAACAGA 60.223 50.000 26.48 17.65 43.74 3.41
564 573 4.479158 AGGCTGTTGGTCAAAGGAAATTA 58.521 39.130 0.00 0.00 0.00 1.40
624 633 1.028905 CCAAAACAGCTCCAAACGGA 58.971 50.000 0.00 0.00 0.00 4.69
679 688 1.338674 ACAAACCGATCGCCTGAATGA 60.339 47.619 10.32 0.00 0.00 2.57
713 723 4.081761 CGATGTGCATCTTTTTCGTGTAC 58.918 43.478 10.05 0.00 35.72 2.90
795 809 1.944709 GAGAGGAGCTTACTCGAGGTC 59.055 57.143 18.41 5.17 44.48 3.85
809 824 1.000607 CGAGGTCGAAGAAGACACCAA 60.001 52.381 0.00 0.00 42.62 3.67
836 851 1.078426 CTCGCATCCCTCCCGTTTT 60.078 57.895 0.00 0.00 0.00 2.43
846 869 0.389948 CTCCCGTTTTCTCCTCGTGG 60.390 60.000 0.00 0.00 0.00 4.94
899 922 1.557443 CGTCCACAGAAACTGCCGAC 61.557 60.000 0.00 0.00 34.37 4.79
911 934 2.434359 GCCGACTCCTGGGTTTCG 60.434 66.667 0.00 0.00 0.00 3.46
956 979 5.163754 GCTTTAAGAAACATGCGATGTAGGT 60.164 40.000 0.00 0.00 44.07 3.08
969 992 5.771165 TGCGATGTAGGTCCAATAGTGTATA 59.229 40.000 0.00 0.00 0.00 1.47
993 1016 2.158696 GGCTATCAAACAGGCCAGATCT 60.159 50.000 5.01 0.00 43.59 2.75
996 1019 4.400567 GCTATCAAACAGGCCAGATCTTTT 59.599 41.667 5.01 0.00 0.00 2.27
997 1020 5.105595 GCTATCAAACAGGCCAGATCTTTTT 60.106 40.000 5.01 0.00 0.00 1.94
999 1022 4.214310 TCAAACAGGCCAGATCTTTTTCA 58.786 39.130 5.01 0.00 0.00 2.69
1003 1026 0.881118 GGCCAGATCTTTTTCACGCA 59.119 50.000 0.00 0.00 0.00 5.24
1006 1029 2.154462 CCAGATCTTTTTCACGCAGGT 58.846 47.619 0.00 0.00 0.00 4.00
1010 1033 2.613026 TCTTTTTCACGCAGGTCTGA 57.387 45.000 1.65 0.00 0.00 3.27
1049 1072 1.271001 ACCAAACACGCCCCTAGTAAC 60.271 52.381 0.00 0.00 0.00 2.50
1050 1073 1.002773 CCAAACACGCCCCTAGTAACT 59.997 52.381 0.00 0.00 0.00 2.24
1051 1074 2.551504 CCAAACACGCCCCTAGTAACTT 60.552 50.000 0.00 0.00 0.00 2.66
1052 1075 2.467566 AACACGCCCCTAGTAACTTG 57.532 50.000 0.00 0.00 0.00 3.16
1053 1076 0.611714 ACACGCCCCTAGTAACTTGG 59.388 55.000 0.00 0.00 0.00 3.61
1054 1077 0.743345 CACGCCCCTAGTAACTTGGC 60.743 60.000 0.00 0.00 38.74 4.52
1055 1078 0.908180 ACGCCCCTAGTAACTTGGCT 60.908 55.000 0.00 0.00 39.97 4.75
1056 1079 0.462047 CGCCCCTAGTAACTTGGCTG 60.462 60.000 0.00 0.00 39.97 4.85
1057 1080 0.107165 GCCCCTAGTAACTTGGCTGG 60.107 60.000 0.00 0.00 39.05 4.85
1058 1081 0.546598 CCCCTAGTAACTTGGCTGGG 59.453 60.000 0.00 0.00 33.76 4.45
1059 1082 0.107165 CCCTAGTAACTTGGCTGGGC 60.107 60.000 0.00 0.00 32.79 5.36
1060 1083 0.618458 CCTAGTAACTTGGCTGGGCA 59.382 55.000 0.00 0.00 0.00 5.36
1061 1084 1.004277 CCTAGTAACTTGGCTGGGCAA 59.996 52.381 9.14 9.14 0.00 4.52
1062 1085 2.359900 CTAGTAACTTGGCTGGGCAAG 58.640 52.381 27.41 27.41 34.79 4.01
1063 1086 0.251341 AGTAACTTGGCTGGGCAAGG 60.251 55.000 30.48 17.87 33.05 3.61
1120 1143 1.001633 TGGTGCTACGAAACTTCCTCC 59.998 52.381 0.00 0.00 0.00 4.30
1121 1144 1.675116 GGTGCTACGAAACTTCCTCCC 60.675 57.143 0.00 0.00 0.00 4.30
1137 1160 2.284112 CCCCCAATGCCTTGCACT 60.284 61.111 0.00 0.00 43.04 4.40
1163 1186 2.584608 CCGAATGGCCGTTCCTCT 59.415 61.111 28.15 0.00 35.26 3.69
1186 1248 6.256104 TCTGACGTATCAAAAAGTCGTGAAAA 59.744 34.615 0.00 0.00 36.49 2.29
1205 1267 7.239972 GTGAAAATTTTGTTTTAGCAACTGCA 58.760 30.769 8.47 0.00 45.16 4.41
1206 1268 7.909641 GTGAAAATTTTGTTTTAGCAACTGCAT 59.090 29.630 8.47 0.00 45.16 3.96
1207 1269 7.909121 TGAAAATTTTGTTTTAGCAACTGCATG 59.091 29.630 8.47 0.00 45.16 4.06
1208 1270 4.792528 TTTTGTTTTAGCAACTGCATGC 57.207 36.364 11.82 11.82 46.78 4.06
1220 1282 3.414272 GCATGCGTTGCCCTAGAG 58.586 61.111 0.00 0.00 46.15 2.43
1245 1307 6.403200 GCAAAAATAACGAGGCAGAGACATAA 60.403 38.462 0.00 0.00 0.00 1.90
1264 1326 9.260002 AGACATAAATTTTTGGTGCTAAACAAG 57.740 29.630 12.41 0.00 0.00 3.16
1265 1327 8.956533 ACATAAATTTTTGGTGCTAAACAAGT 57.043 26.923 12.41 0.00 0.00 3.16
1275 1337 5.144359 GGTGCTAAACAAGTAAACATGTCG 58.856 41.667 0.00 0.00 0.00 4.35
1291 1353 2.697654 TGTCGACATGAATCATGCACA 58.302 42.857 21.92 18.06 44.80 4.57
1299 1361 6.293244 CGACATGAATCATGCACAAGATACAT 60.293 38.462 21.92 0.00 44.80 2.29
1301 1363 8.454570 ACATGAATCATGCACAAGATACATAA 57.545 30.769 21.92 0.00 44.80 1.90
1302 1364 8.347771 ACATGAATCATGCACAAGATACATAAC 58.652 33.333 21.92 0.00 44.80 1.89
1303 1365 8.565416 CATGAATCATGCACAAGATACATAACT 58.435 33.333 10.55 0.00 35.02 2.24
1307 1448 4.568072 TGCACAAGATACATAACTGGGT 57.432 40.909 0.00 0.00 0.00 4.51
1308 1449 5.685520 TGCACAAGATACATAACTGGGTA 57.314 39.130 0.00 0.00 0.00 3.69
1310 1451 4.506654 GCACAAGATACATAACTGGGTACG 59.493 45.833 0.00 0.00 0.00 3.67
1320 1461 5.067413 ACATAACTGGGTACGTAGTCTCATG 59.933 44.000 0.00 0.41 43.93 3.07
1321 1462 1.749634 ACTGGGTACGTAGTCTCATGC 59.250 52.381 0.00 0.00 43.93 4.06
1325 1466 3.955551 TGGGTACGTAGTCTCATGCATAA 59.044 43.478 0.00 0.00 43.93 1.90
1328 1469 5.451520 GGGTACGTAGTCTCATGCATAAGTT 60.452 44.000 0.00 0.00 43.93 2.66
1329 1470 6.238842 GGGTACGTAGTCTCATGCATAAGTTA 60.239 42.308 0.00 0.00 43.93 2.24
1330 1471 7.198390 GGTACGTAGTCTCATGCATAAGTTAA 58.802 38.462 0.00 0.00 43.93 2.01
1331 1472 7.866393 GGTACGTAGTCTCATGCATAAGTTAAT 59.134 37.037 0.00 0.00 43.93 1.40
1332 1473 9.888878 GTACGTAGTCTCATGCATAAGTTAATA 57.111 33.333 0.00 0.00 43.93 0.98
1335 1476 8.906693 CGTAGTCTCATGCATAAGTTAATAGTG 58.093 37.037 0.00 0.00 0.00 2.74
1340 1481 9.261180 TCTCATGCATAAGTTAATAGTGTTAGC 57.739 33.333 0.00 0.00 0.00 3.09
1341 1482 9.265901 CTCATGCATAAGTTAATAGTGTTAGCT 57.734 33.333 0.00 0.00 0.00 3.32
1374 1515 9.997482 GATTTACTTAAAGAATAAATGTGGCGA 57.003 29.630 0.00 0.00 30.50 5.54
1375 1516 9.783256 ATTTACTTAAAGAATAAATGTGGCGAC 57.217 29.630 0.00 0.00 29.46 5.19
1376 1517 8.556213 TTACTTAAAGAATAAATGTGGCGACT 57.444 30.769 0.00 0.00 0.00 4.18
1377 1518 6.842163 ACTTAAAGAATAAATGTGGCGACTG 58.158 36.000 0.00 0.00 0.00 3.51
1378 1519 6.653320 ACTTAAAGAATAAATGTGGCGACTGA 59.347 34.615 0.00 0.00 0.00 3.41
1379 1520 5.957842 AAAGAATAAATGTGGCGACTGAA 57.042 34.783 0.00 0.00 0.00 3.02
1380 1521 5.957842 AAGAATAAATGTGGCGACTGAAA 57.042 34.783 0.00 0.00 0.00 2.69
1381 1522 6.515272 AAGAATAAATGTGGCGACTGAAAT 57.485 33.333 0.00 0.00 0.00 2.17
1382 1523 6.515272 AGAATAAATGTGGCGACTGAAATT 57.485 33.333 0.00 0.00 0.00 1.82
1383 1524 6.924111 AGAATAAATGTGGCGACTGAAATTT 58.076 32.000 0.00 0.00 0.00 1.82
1384 1525 8.050778 AGAATAAATGTGGCGACTGAAATTTA 57.949 30.769 0.00 2.87 0.00 1.40
1385 1526 8.519526 AGAATAAATGTGGCGACTGAAATTTAA 58.480 29.630 0.00 0.00 0.00 1.52
1386 1527 9.301153 GAATAAATGTGGCGACTGAAATTTAAT 57.699 29.630 0.00 0.00 0.00 1.40
1387 1528 9.651913 AATAAATGTGGCGACTGAAATTTAATT 57.348 25.926 0.00 0.00 0.00 1.40
1389 1530 8.687824 AAATGTGGCGACTGAAATTTAATTAG 57.312 30.769 0.00 0.00 0.00 1.73
1390 1531 7.624360 ATGTGGCGACTGAAATTTAATTAGA 57.376 32.000 0.00 0.00 0.00 2.10
1391 1532 7.441890 TGTGGCGACTGAAATTTAATTAGAA 57.558 32.000 0.00 0.00 0.00 2.10
1392 1533 7.526608 TGTGGCGACTGAAATTTAATTAGAAG 58.473 34.615 0.00 0.00 0.00 2.85
1393 1534 6.469275 GTGGCGACTGAAATTTAATTAGAAGC 59.531 38.462 0.00 0.00 0.00 3.86
1394 1535 6.150307 TGGCGACTGAAATTTAATTAGAAGCA 59.850 34.615 0.00 0.00 0.00 3.91
1395 1536 7.027161 GGCGACTGAAATTTAATTAGAAGCAA 58.973 34.615 0.00 0.00 0.00 3.91
1396 1537 7.540745 GGCGACTGAAATTTAATTAGAAGCAAA 59.459 33.333 0.00 0.00 0.00 3.68
1397 1538 9.076596 GCGACTGAAATTTAATTAGAAGCAAAT 57.923 29.630 0.00 0.00 0.00 2.32
1439 1580 1.688735 TCTGTTGGTGAGTCAGTCCAG 59.311 52.381 0.00 0.00 32.63 3.86
1444 1585 0.892063 GGTGAGTCAGTCCAGTCTCC 59.108 60.000 0.00 0.00 0.00 3.71
1445 1586 0.892063 GTGAGTCAGTCCAGTCTCCC 59.108 60.000 0.00 0.00 0.00 4.30
1448 1589 0.178958 AGTCAGTCCAGTCTCCCGTT 60.179 55.000 0.00 0.00 0.00 4.44
1571 1713 1.380785 TCGGGCTGGTCGGTATCTT 60.381 57.895 0.00 0.00 0.00 2.40
1572 1714 1.067582 CGGGCTGGTCGGTATCTTC 59.932 63.158 0.00 0.00 0.00 2.87
1574 1716 1.335132 GGGCTGGTCGGTATCTTCCA 61.335 60.000 0.00 0.00 0.00 3.53
1579 1721 0.384669 GGTCGGTATCTTCCACGAGG 59.615 60.000 0.00 0.00 35.88 4.63
1656 1798 0.037326 TCGTGCTCACCATGTCCTTC 60.037 55.000 0.00 0.00 0.00 3.46
1668 1810 1.299976 GTCCTTCCTCGCCCACATT 59.700 57.895 0.00 0.00 0.00 2.71
1672 1814 3.203086 TTCCTCGCCCACATTGCCA 62.203 57.895 0.00 0.00 0.00 4.92
1678 1820 3.085119 GCCCACATTGCCATCTGCC 62.085 63.158 0.00 0.00 40.16 4.85
1681 1823 2.440796 ACATTGCCATCTGCCCCG 60.441 61.111 0.00 0.00 40.16 5.73
1688 1830 3.801997 CATCTGCCCCGCCCTCTT 61.802 66.667 0.00 0.00 0.00 2.85
1689 1831 3.483869 ATCTGCCCCGCCCTCTTC 61.484 66.667 0.00 0.00 0.00 2.87
1701 1843 3.787001 CTCTTCCCCCACGCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
1713 1855 4.475135 GCCCTCGCCTCCTCCAAC 62.475 72.222 0.00 0.00 0.00 3.77
1714 1856 4.148825 CCCTCGCCTCCTCCAACG 62.149 72.222 0.00 0.00 0.00 4.10
1715 1857 4.821589 CCTCGCCTCCTCCAACGC 62.822 72.222 0.00 0.00 0.00 4.84
1716 1858 4.821589 CTCGCCTCCTCCAACGCC 62.822 72.222 0.00 0.00 0.00 5.68
1766 1908 3.069778 GGCACCCTTCTTCCTCGT 58.930 61.111 0.00 0.00 0.00 4.18
1767 1909 2.283824 GGCACCCTTCTTCCTCGTA 58.716 57.895 0.00 0.00 0.00 3.43
1768 1910 0.175989 GGCACCCTTCTTCCTCGTAG 59.824 60.000 0.00 0.00 0.00 3.51
1769 1911 1.183549 GCACCCTTCTTCCTCGTAGA 58.816 55.000 0.00 0.00 0.00 2.59
1780 1922 3.145551 TCGTAGAGGCGGCCTTCC 61.146 66.667 24.71 11.56 31.76 3.46
1781 1923 3.458163 CGTAGAGGCGGCCTTCCA 61.458 66.667 24.71 8.54 31.76 3.53
1782 1924 2.187163 GTAGAGGCGGCCTTCCAC 59.813 66.667 24.71 16.72 31.76 4.02
1783 1925 3.081409 TAGAGGCGGCCTTCCACC 61.081 66.667 24.71 9.93 31.76 4.61
1790 1932 4.115199 GGCCTTCCACCTCGCCAT 62.115 66.667 0.00 0.00 41.25 4.40
1791 1933 2.514824 GCCTTCCACCTCGCCATC 60.515 66.667 0.00 0.00 0.00 3.51
1792 1934 2.202932 CCTTCCACCTCGCCATCG 60.203 66.667 0.00 0.00 0.00 3.84
1793 1935 2.892425 CTTCCACCTCGCCATCGC 60.892 66.667 0.00 0.00 35.26 4.58
1794 1936 4.467084 TTCCACCTCGCCATCGCC 62.467 66.667 0.00 0.00 35.26 5.54
1804 1946 4.129737 CCATCGCCGTCCAGTCGT 62.130 66.667 0.00 0.00 0.00 4.34
1805 1947 2.126071 CATCGCCGTCCAGTCGTT 60.126 61.111 0.00 0.00 0.00 3.85
1806 1948 2.158959 CATCGCCGTCCAGTCGTTC 61.159 63.158 0.00 0.00 0.00 3.95
1807 1949 3.678717 ATCGCCGTCCAGTCGTTCG 62.679 63.158 0.00 0.00 0.00 3.95
1828 1970 4.052229 CCACCGCCTTCGTCGTCT 62.052 66.667 0.00 0.00 0.00 4.18
1829 1971 2.049433 CACCGCCTTCGTCGTCTT 60.049 61.111 0.00 0.00 0.00 3.01
1830 1972 2.087009 CACCGCCTTCGTCGTCTTC 61.087 63.158 0.00 0.00 0.00 2.87
1831 1973 2.266627 ACCGCCTTCGTCGTCTTCT 61.267 57.895 0.00 0.00 0.00 2.85
1832 1974 1.514443 CCGCCTTCGTCGTCTTCTC 60.514 63.158 0.00 0.00 0.00 2.87
1833 1975 1.514443 CGCCTTCGTCGTCTTCTCC 60.514 63.158 0.00 0.00 0.00 3.71
1834 1976 1.514443 GCCTTCGTCGTCTTCTCCG 60.514 63.158 0.00 0.00 0.00 4.63
1835 1977 1.874562 CCTTCGTCGTCTTCTCCGT 59.125 57.895 0.00 0.00 0.00 4.69
1836 1978 0.179194 CCTTCGTCGTCTTCTCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
1837 1979 0.179194 CTTCGTCGTCTTCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
1838 1980 1.904852 TTCGTCGTCTTCTCCGTCCG 61.905 60.000 0.00 0.00 0.00 4.79
1839 1981 2.202453 GTCGTCTTCTCCGTCCGC 60.202 66.667 0.00 0.00 0.00 5.54
1840 1982 3.437795 TCGTCTTCTCCGTCCGCC 61.438 66.667 0.00 0.00 0.00 6.13
1841 1983 4.493747 CGTCTTCTCCGTCCGCCC 62.494 72.222 0.00 0.00 0.00 6.13
1842 1984 4.493747 GTCTTCTCCGTCCGCCCG 62.494 72.222 0.00 0.00 0.00 6.13
1871 2013 4.933064 GAGGGACGATCGCGCCTG 62.933 72.222 22.18 0.00 42.48 4.85
1891 2033 4.008933 GCCTCGTGGTCACCAGCT 62.009 66.667 0.00 0.00 32.34 4.24
1892 2034 2.743718 CCTCGTGGTCACCAGCTT 59.256 61.111 0.00 0.00 32.34 3.74
1893 2035 1.374758 CCTCGTGGTCACCAGCTTC 60.375 63.158 0.00 0.00 32.34 3.86
1894 2036 1.734477 CTCGTGGTCACCAGCTTCG 60.734 63.158 0.00 0.00 32.34 3.79
1895 2037 2.142357 CTCGTGGTCACCAGCTTCGA 62.142 60.000 0.00 1.08 32.34 3.71
1896 2038 2.022129 CGTGGTCACCAGCTTCGAC 61.022 63.158 0.00 0.00 32.34 4.20
1897 2039 2.022129 GTGGTCACCAGCTTCGACG 61.022 63.158 0.00 0.00 32.34 5.12
1898 2040 3.112709 GGTCACCAGCTTCGACGC 61.113 66.667 5.63 5.63 0.00 5.19
1899 2041 3.112709 GTCACCAGCTTCGACGCC 61.113 66.667 10.66 0.00 0.00 5.68
1900 2042 3.303135 TCACCAGCTTCGACGCCT 61.303 61.111 10.66 0.00 0.00 5.52
1901 2043 2.357517 CACCAGCTTCGACGCCTT 60.358 61.111 10.66 0.00 0.00 4.35
1902 2044 2.048127 ACCAGCTTCGACGCCTTC 60.048 61.111 10.66 0.00 0.00 3.46
1903 2045 2.815647 CCAGCTTCGACGCCTTCC 60.816 66.667 10.66 0.00 0.00 3.46
1904 2046 2.262915 CAGCTTCGACGCCTTCCT 59.737 61.111 10.66 0.00 0.00 3.36
1905 2047 1.807573 CAGCTTCGACGCCTTCCTC 60.808 63.158 10.66 0.00 0.00 3.71
1906 2048 2.509561 GCTTCGACGCCTTCCTCC 60.510 66.667 1.75 0.00 0.00 4.30
1907 2049 3.007973 GCTTCGACGCCTTCCTCCT 62.008 63.158 1.75 0.00 0.00 3.69
1908 2050 1.139947 CTTCGACGCCTTCCTCCTC 59.860 63.158 0.00 0.00 0.00 3.71
1909 2051 2.286127 CTTCGACGCCTTCCTCCTCC 62.286 65.000 0.00 0.00 0.00 4.30
1910 2052 2.756283 CGACGCCTTCCTCCTCCT 60.756 66.667 0.00 0.00 0.00 3.69
1911 2053 2.776913 CGACGCCTTCCTCCTCCTC 61.777 68.421 0.00 0.00 0.00 3.71
1912 2054 2.364448 ACGCCTTCCTCCTCCTCC 60.364 66.667 0.00 0.00 0.00 4.30
1913 2055 2.042435 CGCCTTCCTCCTCCTCCT 60.042 66.667 0.00 0.00 0.00 3.69
1914 2056 2.131067 CGCCTTCCTCCTCCTCCTC 61.131 68.421 0.00 0.00 0.00 3.71
1915 2057 2.131067 GCCTTCCTCCTCCTCCTCG 61.131 68.421 0.00 0.00 0.00 4.63
1916 2058 1.456705 CCTTCCTCCTCCTCCTCGG 60.457 68.421 0.00 0.00 0.00 4.63
1917 2059 2.042843 TTCCTCCTCCTCCTCGGC 60.043 66.667 0.00 0.00 0.00 5.54
1918 2060 2.581726 CTTCCTCCTCCTCCTCGGCT 62.582 65.000 0.00 0.00 0.00 5.52
1919 2061 2.837291 CCTCCTCCTCCTCGGCTG 60.837 72.222 0.00 0.00 0.00 4.85
1920 2062 3.535962 CTCCTCCTCCTCGGCTGC 61.536 72.222 0.00 0.00 0.00 5.25
1921 2063 4.382541 TCCTCCTCCTCGGCTGCA 62.383 66.667 0.50 0.00 0.00 4.41
1922 2064 4.154347 CCTCCTCCTCGGCTGCAC 62.154 72.222 0.50 0.00 0.00 4.57
1923 2065 4.154347 CTCCTCCTCGGCTGCACC 62.154 72.222 0.50 0.00 0.00 5.01
1983 2125 3.362797 CTGGTGGCACTGCTGCTG 61.363 66.667 18.45 4.89 43.66 4.41
1986 2128 4.039357 GTGGCACTGCTGCTGCTG 62.039 66.667 18.66 18.66 43.66 4.41
1989 2131 3.735029 GCACTGCTGCTGCTGGTC 61.735 66.667 22.83 12.16 40.63 4.02
1990 2132 3.420606 CACTGCTGCTGCTGGTCG 61.421 66.667 22.83 9.93 41.57 4.79
1991 2133 4.694233 ACTGCTGCTGCTGGTCGG 62.694 66.667 22.83 7.32 41.57 4.79
1992 2134 4.694233 CTGCTGCTGCTGGTCGGT 62.694 66.667 17.00 0.00 40.48 4.69
1993 2135 4.994471 TGCTGCTGCTGGTCGGTG 62.994 66.667 17.00 0.00 40.48 4.94
2000 2142 4.367023 GCTGGTCGGTGGCGTGTA 62.367 66.667 0.00 0.00 0.00 2.90
2001 2143 2.431942 CTGGTCGGTGGCGTGTAC 60.432 66.667 0.00 0.00 0.00 2.90
2002 2144 2.913578 TGGTCGGTGGCGTGTACT 60.914 61.111 0.00 0.00 0.00 2.73
2003 2145 2.341176 GGTCGGTGGCGTGTACTT 59.659 61.111 0.00 0.00 0.00 2.24
2004 2146 1.735559 GGTCGGTGGCGTGTACTTC 60.736 63.158 0.00 0.00 0.00 3.01
2005 2147 2.084681 GTCGGTGGCGTGTACTTCG 61.085 63.158 0.00 0.40 0.00 3.79
2013 2155 4.078516 GTGTACTTCGCCGGGGCT 62.079 66.667 14.85 0.86 39.32 5.19
2014 2156 4.077184 TGTACTTCGCCGGGGCTG 62.077 66.667 14.85 11.12 39.32 4.85
2015 2157 4.832608 GTACTTCGCCGGGGCTGG 62.833 72.222 14.85 8.52 39.32 4.85
2052 2194 3.250323 CGCGTCGGCTCTGTGATG 61.250 66.667 0.00 0.00 36.88 3.07
2053 2195 2.181777 GCGTCGGCTCTGTGATGA 59.818 61.111 0.00 0.00 35.83 2.92
2054 2196 1.227089 GCGTCGGCTCTGTGATGAT 60.227 57.895 0.00 0.00 35.83 2.45
2055 2197 1.485838 GCGTCGGCTCTGTGATGATG 61.486 60.000 0.00 0.00 35.83 3.07
2056 2198 0.873312 CGTCGGCTCTGTGATGATGG 60.873 60.000 0.00 0.00 0.00 3.51
2057 2199 0.176680 GTCGGCTCTGTGATGATGGT 59.823 55.000 0.00 0.00 0.00 3.55
2058 2200 0.176449 TCGGCTCTGTGATGATGGTG 59.824 55.000 0.00 0.00 0.00 4.17
2059 2201 1.434622 CGGCTCTGTGATGATGGTGC 61.435 60.000 0.00 0.00 0.00 5.01
2060 2202 0.107312 GGCTCTGTGATGATGGTGCT 60.107 55.000 0.00 0.00 0.00 4.40
2061 2203 1.015109 GCTCTGTGATGATGGTGCTG 58.985 55.000 0.00 0.00 0.00 4.41
2062 2204 1.664873 CTCTGTGATGATGGTGCTGG 58.335 55.000 0.00 0.00 0.00 4.85
2063 2205 1.208776 CTCTGTGATGATGGTGCTGGA 59.791 52.381 0.00 0.00 0.00 3.86
2064 2206 1.208776 TCTGTGATGATGGTGCTGGAG 59.791 52.381 0.00 0.00 0.00 3.86
2065 2207 0.253894 TGTGATGATGGTGCTGGAGG 59.746 55.000 0.00 0.00 0.00 4.30
2066 2208 0.543277 GTGATGATGGTGCTGGAGGA 59.457 55.000 0.00 0.00 0.00 3.71
2067 2209 0.543277 TGATGATGGTGCTGGAGGAC 59.457 55.000 0.00 0.00 35.50 3.85
2068 2210 0.531532 GATGATGGTGCTGGAGGACG 60.532 60.000 0.00 0.00 37.24 4.79
2069 2211 2.512515 GATGGTGCTGGAGGACGC 60.513 66.667 0.00 0.00 37.24 5.19
2070 2212 4.101448 ATGGTGCTGGAGGACGCC 62.101 66.667 0.00 0.00 37.24 5.68
2072 2214 4.767255 GGTGCTGGAGGACGCCTG 62.767 72.222 2.98 0.00 37.24 4.85
2073 2215 4.767255 GTGCTGGAGGACGCCTGG 62.767 72.222 2.98 0.00 31.76 4.45
2100 2242 3.503363 GCCCTGTGCATGAGCGAC 61.503 66.667 0.00 0.00 46.23 5.19
2101 2243 3.190849 CCCTGTGCATGAGCGACG 61.191 66.667 0.00 0.00 46.23 5.12
2102 2244 2.125952 CCTGTGCATGAGCGACGA 60.126 61.111 0.00 0.00 46.23 4.20
2103 2245 2.163390 CCTGTGCATGAGCGACGAG 61.163 63.158 0.00 0.00 46.23 4.18
2104 2246 2.796425 CTGTGCATGAGCGACGAGC 61.796 63.158 0.00 0.00 46.23 5.03
2127 2269 3.554692 CTCGACGCCCGCATGTTC 61.555 66.667 0.00 0.00 38.37 3.18
2128 2270 3.989698 CTCGACGCCCGCATGTTCT 62.990 63.158 0.00 0.00 38.37 3.01
2129 2271 3.853330 CGACGCCCGCATGTTCTG 61.853 66.667 0.00 0.00 0.00 3.02
2130 2272 3.499737 GACGCCCGCATGTTCTGG 61.500 66.667 0.00 0.00 0.00 3.86
2137 2279 4.740822 GCATGTTCTGGGCCCCGT 62.741 66.667 22.27 1.02 0.00 5.28
2138 2280 2.438434 CATGTTCTGGGCCCCGTC 60.438 66.667 22.27 11.48 0.00 4.79
2139 2281 3.728373 ATGTTCTGGGCCCCGTCC 61.728 66.667 22.27 8.62 0.00 4.79
2160 2302 3.764049 GTCGCCGTGTTCACGCTC 61.764 66.667 18.14 11.38 0.00 5.03
2161 2303 4.273257 TCGCCGTGTTCACGCTCA 62.273 61.111 18.14 2.72 0.00 4.26
2162 2304 4.059459 CGCCGTGTTCACGCTCAC 62.059 66.667 18.14 7.55 0.00 3.51
2166 2308 2.846918 GTGTTCACGCTCACGCTC 59.153 61.111 0.00 0.00 45.53 5.03
2167 2309 2.729491 TGTTCACGCTCACGCTCG 60.729 61.111 0.00 0.00 45.53 5.03
2168 2310 2.729862 GTTCACGCTCACGCTCGT 60.730 61.111 0.00 0.00 45.53 4.18
2169 2311 2.428569 TTCACGCTCACGCTCGTC 60.429 61.111 0.00 0.00 45.53 4.20
2170 2312 4.736631 TCACGCTCACGCTCGTCG 62.737 66.667 0.00 0.00 45.53 5.12
2180 2322 4.521062 GCTCGTCGGCTGCATCCT 62.521 66.667 4.84 0.00 0.00 3.24
2181 2323 2.584418 CTCGTCGGCTGCATCCTG 60.584 66.667 4.84 0.00 0.00 3.86
2182 2324 4.147449 TCGTCGGCTGCATCCTGG 62.147 66.667 4.84 0.00 0.00 4.45
2190 2332 4.657408 TGCATCCTGGCCGTGCAA 62.657 61.111 18.68 6.43 44.99 4.08
2191 2333 4.120331 GCATCCTGGCCGTGCAAC 62.120 66.667 14.85 0.00 38.68 4.17
2192 2334 2.360350 CATCCTGGCCGTGCAACT 60.360 61.111 0.00 0.00 31.75 3.16
2193 2335 2.360350 ATCCTGGCCGTGCAACTG 60.360 61.111 0.00 0.00 31.75 3.16
2194 2336 3.925630 ATCCTGGCCGTGCAACTGG 62.926 63.158 0.00 0.00 34.39 4.00
2199 2341 4.043200 GCCGTGCAACTGGCCTTC 62.043 66.667 13.48 0.00 46.07 3.46
2200 2342 2.594303 CCGTGCAACTGGCCTTCA 60.594 61.111 3.32 0.00 43.89 3.02
2220 2362 4.760047 GCGCTGGTGGTCCACGAT 62.760 66.667 15.93 0.00 39.03 3.73
2221 2363 2.815211 CGCTGGTGGTCCACGATG 60.815 66.667 15.93 9.18 39.03 3.84
2222 2364 2.347490 GCTGGTGGTCCACGATGT 59.653 61.111 15.93 0.00 39.03 3.06
2223 2365 2.034879 GCTGGTGGTCCACGATGTG 61.035 63.158 15.93 1.83 39.03 3.21
2224 2366 1.671166 CTGGTGGTCCACGATGTGA 59.329 57.895 15.93 0.00 39.03 3.58
2225 2367 0.250234 CTGGTGGTCCACGATGTGAT 59.750 55.000 15.93 0.00 39.03 3.06
2226 2368 0.036483 TGGTGGTCCACGATGTGATG 60.036 55.000 15.93 0.00 39.03 3.07
2227 2369 0.744414 GGTGGTCCACGATGTGATGG 60.744 60.000 15.93 0.00 35.23 3.51
2228 2370 0.744414 GTGGTCCACGATGTGATGGG 60.744 60.000 6.18 0.00 35.23 4.00
2229 2371 1.819632 GGTCCACGATGTGATGGGC 60.820 63.158 0.00 0.00 40.06 5.36
2230 2372 1.819632 GTCCACGATGTGATGGGCC 60.820 63.158 0.00 0.00 34.30 5.80
2231 2373 1.995066 TCCACGATGTGATGGGCCT 60.995 57.895 4.53 0.00 35.23 5.19
2232 2374 1.524621 CCACGATGTGATGGGCCTC 60.525 63.158 4.53 0.00 35.23 4.70
2233 2375 1.884464 CACGATGTGATGGGCCTCG 60.884 63.158 4.53 7.12 35.23 4.63
2234 2376 2.280389 CGATGTGATGGGCCTCGG 60.280 66.667 4.53 0.00 0.00 4.63
2235 2377 2.592861 GATGTGATGGGCCTCGGC 60.593 66.667 4.53 0.00 41.06 5.54
2236 2378 4.552365 ATGTGATGGGCCTCGGCG 62.552 66.667 4.53 0.00 43.06 6.46
2240 2382 4.899239 GATGGGCCTCGGCGTCTG 62.899 72.222 6.85 0.00 43.06 3.51
2250 2392 4.803426 GGCGTCTGGCTCCGAGTG 62.803 72.222 0.00 0.00 42.94 3.51
2251 2393 4.803426 GCGTCTGGCTCCGAGTGG 62.803 72.222 0.00 0.00 39.11 4.00
2252 2394 4.803426 CGTCTGGCTCCGAGTGGC 62.803 72.222 0.00 0.00 34.14 5.01
2272 2414 4.467084 CGGGGGTGGTGATGACGG 62.467 72.222 0.00 0.00 0.00 4.79
2273 2415 3.327404 GGGGGTGGTGATGACGGT 61.327 66.667 0.00 0.00 0.00 4.83
2274 2416 2.046314 GGGGTGGTGATGACGGTG 60.046 66.667 0.00 0.00 0.00 4.94
2275 2417 2.046314 GGGTGGTGATGACGGTGG 60.046 66.667 0.00 0.00 0.00 4.61
2276 2418 2.746277 GGTGGTGATGACGGTGGC 60.746 66.667 0.00 0.00 0.00 5.01
2277 2419 3.118454 GTGGTGATGACGGTGGCG 61.118 66.667 0.00 0.00 0.00 5.69
2279 2421 4.760047 GGTGATGACGGTGGCGCT 62.760 66.667 7.64 0.00 0.00 5.92
2280 2422 3.490759 GTGATGACGGTGGCGCTG 61.491 66.667 7.64 5.09 0.00 5.18
2281 2423 4.002506 TGATGACGGTGGCGCTGT 62.003 61.111 13.25 13.25 39.91 4.40
2282 2424 3.490759 GATGACGGTGGCGCTGTG 61.491 66.667 18.75 0.28 36.69 3.66
2322 2464 0.730265 TGGTGTTCTTCGTGTGCAAC 59.270 50.000 0.00 0.00 37.35 4.17
2333 2475 3.605664 GTGCAACAGCCACCACCC 61.606 66.667 0.00 0.00 36.32 4.61
2353 2495 1.389204 CGAGAGCTTCGTCAACGTCG 61.389 60.000 2.09 0.00 44.27 5.12
2354 2496 1.666446 GAGAGCTTCGTCAACGTCGC 61.666 60.000 2.09 6.58 40.80 5.19
2355 2497 2.717809 GAGCTTCGTCAACGTCGCC 61.718 63.158 12.52 4.48 40.80 5.54
2356 2498 3.033764 GCTTCGTCAACGTCGCCA 61.034 61.111 2.09 0.00 40.80 5.69
2357 2499 2.591311 GCTTCGTCAACGTCGCCAA 61.591 57.895 2.09 0.00 40.80 4.52
2358 2500 1.200839 CTTCGTCAACGTCGCCAAC 59.799 57.895 2.09 0.00 40.80 3.77
2385 2527 2.401351 CGCCGGCTTTAGTAATCCTAC 58.599 52.381 26.68 0.00 0.00 3.18
2436 2578 5.755861 GCTAATTTCTAGTACCTTCCTGCAG 59.244 44.000 6.78 6.78 0.00 4.41
2454 2596 6.212388 TCCTGCAGAAGATCTTAAGAGACTTT 59.788 38.462 17.39 9.84 33.99 2.66
2455 2597 6.313411 CCTGCAGAAGATCTTAAGAGACTTTG 59.687 42.308 17.39 19.61 33.99 2.77
2456 2598 5.641209 TGCAGAAGATCTTAAGAGACTTTGC 59.359 40.000 27.02 27.02 33.99 3.68
2457 2599 5.641209 GCAGAAGATCTTAAGAGACTTTGCA 59.359 40.000 27.69 0.00 34.00 4.08
2458 2600 6.315891 GCAGAAGATCTTAAGAGACTTTGCAT 59.684 38.462 27.69 16.54 34.00 3.96
2459 2601 7.676807 GCAGAAGATCTTAAGAGACTTTGCATG 60.677 40.741 27.69 22.07 34.00 4.06
2460 2602 6.315891 AGAAGATCTTAAGAGACTTTGCATGC 59.684 38.462 20.83 11.82 33.99 4.06
2461 2603 5.743117 AGATCTTAAGAGACTTTGCATGCT 58.257 37.500 20.33 0.00 33.99 3.79
2462 2604 6.179040 AGATCTTAAGAGACTTTGCATGCTT 58.821 36.000 20.33 4.47 33.99 3.91
2463 2605 5.618056 TCTTAAGAGACTTTGCATGCTTG 57.382 39.130 20.33 11.09 0.00 4.01
2468 2610 2.494870 GAGACTTTGCATGCTTGGGATT 59.505 45.455 20.33 0.00 0.00 3.01
2469 2611 2.901839 AGACTTTGCATGCTTGGGATTT 59.098 40.909 20.33 0.00 0.00 2.17
2471 2613 2.369532 ACTTTGCATGCTTGGGATTTGT 59.630 40.909 20.33 2.27 0.00 2.83
2472 2614 3.577848 ACTTTGCATGCTTGGGATTTGTA 59.422 39.130 20.33 0.00 0.00 2.41
2473 2615 4.223477 ACTTTGCATGCTTGGGATTTGTAT 59.777 37.500 20.33 0.00 0.00 2.29
2474 2616 3.804786 TGCATGCTTGGGATTTGTATG 57.195 42.857 20.33 0.00 0.00 2.39
2475 2617 3.098377 TGCATGCTTGGGATTTGTATGT 58.902 40.909 20.33 0.00 0.00 2.29
2479 2621 1.824230 GCTTGGGATTTGTATGTGCCA 59.176 47.619 0.00 0.00 33.74 4.92
2480 2622 2.417243 GCTTGGGATTTGTATGTGCCAC 60.417 50.000 0.00 0.00 35.44 5.01
2484 2756 3.257873 TGGGATTTGTATGTGCCACAAAG 59.742 43.478 0.00 0.00 46.01 2.77
2486 2758 4.461081 GGGATTTGTATGTGCCACAAAGTA 59.539 41.667 0.00 0.00 46.01 2.24
2493 2765 3.574284 TGTGCCACAAAGTATGATTGC 57.426 42.857 0.00 0.00 0.00 3.56
2495 2767 3.057386 TGTGCCACAAAGTATGATTGCTG 60.057 43.478 0.00 0.00 0.00 4.41
2546 2822 2.041153 CCTTCTGCACCCAACCAAC 58.959 57.895 0.00 0.00 0.00 3.77
2568 2844 6.650427 ACCCAAGAGTGTTTAATTTCTTCC 57.350 37.500 0.00 0.00 0.00 3.46
2616 2893 1.583495 GCTGCTGTGCATGCTTGAGA 61.583 55.000 20.33 0.00 38.13 3.27
2619 2896 1.890489 TGCTGTGCATGCTTGAGATTT 59.110 42.857 20.33 0.00 31.71 2.17
2620 2897 2.259618 GCTGTGCATGCTTGAGATTTG 58.740 47.619 20.33 0.33 0.00 2.32
2621 2898 2.352421 GCTGTGCATGCTTGAGATTTGT 60.352 45.455 20.33 0.00 0.00 2.83
2622 2899 3.859627 GCTGTGCATGCTTGAGATTTGTT 60.860 43.478 20.33 0.00 0.00 2.83
2623 2900 3.644823 TGTGCATGCTTGAGATTTGTTG 58.355 40.909 20.33 0.00 0.00 3.33
2624 2901 2.991190 GTGCATGCTTGAGATTTGTTGG 59.009 45.455 20.33 0.00 0.00 3.77
2625 2902 1.997606 GCATGCTTGAGATTTGTTGGC 59.002 47.619 11.37 0.00 0.00 4.52
2626 2903 2.610976 GCATGCTTGAGATTTGTTGGCA 60.611 45.455 11.37 0.00 0.00 4.92
2627 2904 3.857052 CATGCTTGAGATTTGTTGGCAT 58.143 40.909 0.00 0.00 39.11 4.40
2628 2905 4.250464 CATGCTTGAGATTTGTTGGCATT 58.750 39.130 0.00 0.00 36.91 3.56
2629 2906 5.412640 CATGCTTGAGATTTGTTGGCATTA 58.587 37.500 0.00 0.00 36.91 1.90
2630 2907 5.664294 TGCTTGAGATTTGTTGGCATTAT 57.336 34.783 0.00 0.00 0.00 1.28
2631 2908 5.653507 TGCTTGAGATTTGTTGGCATTATC 58.346 37.500 0.00 0.00 0.00 1.75
2632 2909 5.419788 TGCTTGAGATTTGTTGGCATTATCT 59.580 36.000 0.00 0.00 32.54 1.98
2633 2910 5.975939 GCTTGAGATTTGTTGGCATTATCTC 59.024 40.000 15.76 15.76 40.18 2.75
2634 2911 6.405065 GCTTGAGATTTGTTGGCATTATCTCA 60.405 38.462 18.95 18.95 43.50 3.27
2635 2912 6.688637 TGAGATTTGTTGGCATTATCTCAG 57.311 37.500 18.95 0.00 42.12 3.35
3157 3434 4.796231 CCCGCCTCGACGTTGGAG 62.796 72.222 2.20 6.77 0.00 3.86
3255 3532 4.057428 GTCTGTCGCCGGAGCTGT 62.057 66.667 5.05 0.00 36.60 4.40
3256 3533 3.749064 TCTGTCGCCGGAGCTGTC 61.749 66.667 5.05 0.00 36.60 3.51
3267 3544 3.151022 AGCTGTCGCTAGCCCCTC 61.151 66.667 9.66 0.00 46.79 4.30
3268 3545 3.151022 GCTGTCGCTAGCCCCTCT 61.151 66.667 9.66 0.00 37.73 3.69
3269 3546 3.124686 CTGTCGCTAGCCCCTCTC 58.875 66.667 9.66 0.00 0.00 3.20
3270 3547 2.442272 TGTCGCTAGCCCCTCTCC 60.442 66.667 9.66 0.00 0.00 3.71
3271 3548 2.442272 GTCGCTAGCCCCTCTCCA 60.442 66.667 9.66 0.00 0.00 3.86
3272 3549 2.123683 TCGCTAGCCCCTCTCCAG 60.124 66.667 9.66 0.00 0.00 3.86
3273 3550 2.123683 CGCTAGCCCCTCTCCAGA 60.124 66.667 9.66 0.00 0.00 3.86
3274 3551 1.532794 CGCTAGCCCCTCTCCAGAT 60.533 63.158 9.66 0.00 0.00 2.90
3275 3552 1.531739 CGCTAGCCCCTCTCCAGATC 61.532 65.000 9.66 0.00 0.00 2.75
3276 3553 1.191489 GCTAGCCCCTCTCCAGATCC 61.191 65.000 2.29 0.00 0.00 3.36
3277 3554 0.897863 CTAGCCCCTCTCCAGATCCG 60.898 65.000 0.00 0.00 0.00 4.18
3278 3555 2.373338 TAGCCCCTCTCCAGATCCGG 62.373 65.000 0.00 0.00 0.00 5.14
3279 3556 2.283809 CCCCTCTCCAGATCCGGT 59.716 66.667 0.00 0.00 0.00 5.28
3280 3557 2.136878 CCCCTCTCCAGATCCGGTG 61.137 68.421 0.00 0.00 0.00 4.94
3281 3558 1.381872 CCCTCTCCAGATCCGGTGT 60.382 63.158 0.00 0.00 0.00 4.16
3282 3559 1.680522 CCCTCTCCAGATCCGGTGTG 61.681 65.000 0.00 0.00 0.00 3.82
3283 3560 1.680522 CCTCTCCAGATCCGGTGTGG 61.681 65.000 12.22 12.22 42.56 4.17
3284 3561 1.680522 CTCTCCAGATCCGGTGTGGG 61.681 65.000 16.52 8.91 41.53 4.61
3285 3562 2.687200 TCCAGATCCGGTGTGGGG 60.687 66.667 16.52 7.69 41.53 4.96
3286 3563 3.797353 CCAGATCCGGTGTGGGGG 61.797 72.222 0.00 0.00 37.60 5.40
3287 3564 3.009115 CAGATCCGGTGTGGGGGT 61.009 66.667 0.00 0.00 38.76 4.95
3288 3565 2.687566 AGATCCGGTGTGGGGGTC 60.688 66.667 0.00 0.00 38.76 4.46
3289 3566 2.687566 GATCCGGTGTGGGGGTCT 60.688 66.667 0.00 0.00 38.76 3.85
3290 3567 2.687566 ATCCGGTGTGGGGGTCTC 60.688 66.667 0.00 0.00 38.76 3.36
3293 3570 3.706373 CGGTGTGGGGGTCTCCTG 61.706 72.222 0.00 0.00 35.33 3.86
3294 3571 3.330720 GGTGTGGGGGTCTCCTGG 61.331 72.222 0.00 0.00 35.33 4.45
3295 3572 3.330720 GTGTGGGGGTCTCCTGGG 61.331 72.222 0.00 0.00 35.33 4.45
3296 3573 3.537506 TGTGGGGGTCTCCTGGGA 61.538 66.667 0.00 0.00 35.33 4.37
3297 3574 2.204090 GTGGGGGTCTCCTGGGAA 60.204 66.667 0.00 0.00 35.33 3.97
3298 3575 2.124996 TGGGGGTCTCCTGGGAAG 59.875 66.667 0.00 0.00 35.33 3.46
3299 3576 2.692741 GGGGGTCTCCTGGGAAGG 60.693 72.222 0.00 0.00 35.33 3.46
3300 3577 2.125225 GGGGTCTCCTGGGAAGGT 59.875 66.667 0.00 0.00 0.00 3.50
3301 3578 1.996187 GGGGTCTCCTGGGAAGGTC 60.996 68.421 0.00 0.00 0.00 3.85
3302 3579 1.996187 GGGTCTCCTGGGAAGGTCC 60.996 68.421 0.00 0.00 35.23 4.46
3303 3580 2.359967 GGTCTCCTGGGAAGGTCCG 61.360 68.421 0.00 0.00 37.43 4.79
3304 3581 1.305046 GTCTCCTGGGAAGGTCCGA 60.305 63.158 0.00 0.00 37.43 4.55
3305 3582 1.305046 TCTCCTGGGAAGGTCCGAC 60.305 63.158 0.00 0.00 37.43 4.79
3306 3583 1.305381 CTCCTGGGAAGGTCCGACT 60.305 63.158 0.00 0.00 37.43 4.18
3307 3584 1.608717 CTCCTGGGAAGGTCCGACTG 61.609 65.000 0.00 0.00 37.43 3.51
3308 3585 2.266055 CTGGGAAGGTCCGACTGC 59.734 66.667 0.00 0.00 37.43 4.40
3309 3586 3.316573 CTGGGAAGGTCCGACTGCC 62.317 68.421 0.00 0.00 37.43 4.85
3310 3587 3.319198 GGGAAGGTCCGACTGCCA 61.319 66.667 0.00 0.00 37.99 4.92
3311 3588 2.266055 GGAAGGTCCGACTGCCAG 59.734 66.667 0.00 0.00 36.09 4.85
3312 3589 2.283529 GGAAGGTCCGACTGCCAGA 61.284 63.158 0.00 0.00 36.09 3.86
3313 3590 1.617947 GGAAGGTCCGACTGCCAGAT 61.618 60.000 0.00 0.00 36.09 2.90
3314 3591 0.179097 GAAGGTCCGACTGCCAGATC 60.179 60.000 0.00 0.00 0.00 2.75
3315 3592 0.904865 AAGGTCCGACTGCCAGATCA 60.905 55.000 0.00 0.00 0.00 2.92
3316 3593 1.142748 GGTCCGACTGCCAGATCAG 59.857 63.158 0.00 0.00 39.86 2.90
3317 3594 1.142748 GTCCGACTGCCAGATCAGG 59.857 63.158 0.00 0.00 38.36 3.86
3325 3602 4.598894 CCAGATCAGGCCGGCTCG 62.599 72.222 28.56 17.91 0.00 5.03
3360 3637 4.527583 GCTCCTCTCTGGCGGCTG 62.528 72.222 11.43 10.52 35.26 4.85
3361 3638 3.847602 CTCCTCTCTGGCGGCTGG 61.848 72.222 15.75 6.13 35.26 4.85
3362 3639 4.704103 TCCTCTCTGGCGGCTGGT 62.704 66.667 15.75 0.00 35.26 4.00
3363 3640 4.463879 CCTCTCTGGCGGCTGGTG 62.464 72.222 15.75 9.28 0.00 4.17
3364 3641 4.463879 CTCTCTGGCGGCTGGTGG 62.464 72.222 15.75 6.97 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 2.467826 GCGAGCACTGCATTCTCCC 61.468 63.158 3.30 0.00 0.00 4.30
141 143 1.607628 GTCCTACTGCACGGACGATAT 59.392 52.381 8.76 0.00 40.18 1.63
246 255 0.471780 TCCTCTGTTCTCTGCCACCA 60.472 55.000 0.00 0.00 0.00 4.17
503 512 4.838665 CAACATTCGTGTTGCAAGTTTT 57.161 36.364 0.00 0.00 41.93 2.43
564 573 1.136363 CGCACACGATCGATTGTTTGT 60.136 47.619 25.51 15.65 43.93 2.83
624 633 4.393062 CCGTACATGCTCAATCTCTTGTTT 59.607 41.667 0.00 0.00 33.87 2.83
679 688 1.006832 GCACATCGATGCTACGGTTT 58.993 50.000 25.11 0.00 42.62 3.27
713 723 1.855360 GCTTCGATTCGAGGTAAGCTG 59.145 52.381 18.52 3.08 37.14 4.24
795 809 4.318831 GCTGTTTACTTGGTGTCTTCTTCG 60.319 45.833 0.00 0.00 0.00 3.79
809 824 0.905357 AGGGATGCGAGCTGTTTACT 59.095 50.000 0.00 0.00 0.00 2.24
880 903 1.300620 TCGGCAGTTTCTGTGGACG 60.301 57.895 0.00 0.00 33.43 4.79
881 904 0.249911 AGTCGGCAGTTTCTGTGGAC 60.250 55.000 0.00 11.38 36.67 4.02
899 922 1.153745 CTCGCTCGAAACCCAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
911 934 3.071206 TCTGGACCTGGCTCGCTC 61.071 66.667 0.00 0.00 0.00 5.03
956 979 7.849322 TTGATAGCCTGTATACACTATTGGA 57.151 36.000 14.12 4.85 0.00 3.53
969 992 0.698238 TGGCCTGTTTGATAGCCTGT 59.302 50.000 3.32 0.00 45.94 4.00
993 1016 3.210227 TCAATCAGACCTGCGTGAAAAA 58.790 40.909 0.00 0.00 0.00 1.94
996 1019 2.143122 GTTCAATCAGACCTGCGTGAA 58.857 47.619 9.59 9.59 33.64 3.18
997 1020 1.608025 GGTTCAATCAGACCTGCGTGA 60.608 52.381 0.00 0.00 0.00 4.35
999 1022 0.687354 AGGTTCAATCAGACCTGCGT 59.313 50.000 0.00 0.00 0.00 5.24
1003 1026 3.535561 CGCATAAGGTTCAATCAGACCT 58.464 45.455 0.00 0.00 31.67 3.85
1006 1029 2.917933 CCCGCATAAGGTTCAATCAGA 58.082 47.619 0.00 0.00 0.00 3.27
1010 1033 1.476488 GTTGCCCGCATAAGGTTCAAT 59.524 47.619 0.00 0.00 0.00 2.57
1049 1072 3.688159 GTGCCTTGCCCAGCCAAG 61.688 66.667 0.00 0.00 41.40 3.61
1120 1143 2.284112 AGTGCAAGGCATTGGGGG 60.284 61.111 13.70 0.00 41.91 5.40
1121 1144 2.703798 CGAGTGCAAGGCATTGGGG 61.704 63.158 13.70 0.00 41.91 4.96
1125 1148 1.005037 TCGACGAGTGCAAGGCATT 60.005 52.632 0.00 0.00 41.91 3.56
1150 1173 0.968901 TACGTCAGAGGAACGGCCAT 60.969 55.000 2.24 0.00 40.02 4.40
1158 1181 4.022589 ACGACTTTTTGATACGTCAGAGGA 60.023 41.667 0.00 0.00 35.39 3.71
1163 1186 5.970140 TTTCACGACTTTTTGATACGTCA 57.030 34.783 0.00 0.00 35.05 4.35
1186 1248 4.084433 CGCATGCAGTTGCTAAAACAAAAT 60.084 37.500 19.57 0.00 40.54 1.82
1205 1267 1.299648 TTGCTCTAGGGCAACGCAT 59.700 52.632 26.22 0.00 45.64 4.73
1206 1268 2.747022 TTGCTCTAGGGCAACGCA 59.253 55.556 26.22 3.94 45.64 5.24
1220 1282 3.188460 TGTCTCTGCCTCGTTATTTTTGC 59.812 43.478 0.00 0.00 0.00 3.68
1245 1307 8.779354 TGTTTACTTGTTTAGCACCAAAAATT 57.221 26.923 0.00 0.00 0.00 1.82
1275 1337 6.367686 TGTATCTTGTGCATGATTCATGTC 57.632 37.500 23.86 17.31 43.10 3.06
1285 1347 5.116084 ACCCAGTTATGTATCTTGTGCAT 57.884 39.130 0.00 0.00 36.99 3.96
1291 1353 7.059156 AGACTACGTACCCAGTTATGTATCTT 58.941 38.462 0.00 0.00 0.00 2.40
1299 1361 3.379372 GCATGAGACTACGTACCCAGTTA 59.621 47.826 0.00 0.00 0.00 2.24
1301 1363 1.749634 GCATGAGACTACGTACCCAGT 59.250 52.381 0.00 0.00 0.00 4.00
1302 1364 1.749063 TGCATGAGACTACGTACCCAG 59.251 52.381 0.00 0.00 0.00 4.45
1303 1365 1.842052 TGCATGAGACTACGTACCCA 58.158 50.000 0.00 0.00 0.00 4.51
1308 1449 8.630917 ACTATTAACTTATGCATGAGACTACGT 58.369 33.333 23.98 10.71 0.00 3.57
1310 1451 9.751542 ACACTATTAACTTATGCATGAGACTAC 57.248 33.333 23.98 0.00 0.00 2.73
1348 1489 9.997482 TCGCCACATTTATTCTTTAAGTAAATC 57.003 29.630 0.00 0.00 0.00 2.17
1351 1492 8.447833 CAGTCGCCACATTTATTCTTTAAGTAA 58.552 33.333 0.00 0.00 0.00 2.24
1354 1495 7.072177 TCAGTCGCCACATTTATTCTTTAAG 57.928 36.000 0.00 0.00 0.00 1.85
1355 1496 7.441890 TTCAGTCGCCACATTTATTCTTTAA 57.558 32.000 0.00 0.00 0.00 1.52
1358 1499 5.957842 TTTCAGTCGCCACATTTATTCTT 57.042 34.783 0.00 0.00 0.00 2.52
1360 1501 8.682128 TTAAATTTCAGTCGCCACATTTATTC 57.318 30.769 0.00 0.00 0.00 1.75
1363 1504 9.781834 CTAATTAAATTTCAGTCGCCACATTTA 57.218 29.630 0.00 0.00 0.00 1.40
1364 1505 8.519526 TCTAATTAAATTTCAGTCGCCACATTT 58.480 29.630 0.00 0.00 0.00 2.32
1366 1507 7.624360 TCTAATTAAATTTCAGTCGCCACAT 57.376 32.000 0.00 0.00 0.00 3.21
1367 1508 7.441890 TTCTAATTAAATTTCAGTCGCCACA 57.558 32.000 0.00 0.00 0.00 4.17
1368 1509 6.469275 GCTTCTAATTAAATTTCAGTCGCCAC 59.531 38.462 0.00 0.00 0.00 5.01
1369 1510 6.150307 TGCTTCTAATTAAATTTCAGTCGCCA 59.850 34.615 0.00 0.00 0.00 5.69
1370 1511 6.551736 TGCTTCTAATTAAATTTCAGTCGCC 58.448 36.000 0.00 0.00 0.00 5.54
1371 1512 8.447787 TTTGCTTCTAATTAAATTTCAGTCGC 57.552 30.769 0.00 0.00 0.00 5.19
1388 1529 8.950210 GCCATATATATACACACATTTGCTTCT 58.050 33.333 0.00 0.00 0.00 2.85
1389 1530 8.184192 GGCCATATATATACACACATTTGCTTC 58.816 37.037 0.00 0.00 0.00 3.86
1390 1531 7.890127 AGGCCATATATATACACACATTTGCTT 59.110 33.333 5.01 0.00 0.00 3.91
1391 1532 7.405292 AGGCCATATATATACACACATTTGCT 58.595 34.615 5.01 0.00 0.00 3.91
1392 1533 7.554118 AGAGGCCATATATATACACACATTTGC 59.446 37.037 5.01 0.00 0.00 3.68
1393 1534 9.453572 AAGAGGCCATATATATACACACATTTG 57.546 33.333 5.01 0.00 0.00 2.32
1394 1535 9.672673 GAAGAGGCCATATATATACACACATTT 57.327 33.333 5.01 0.00 0.00 2.32
1395 1536 9.051259 AGAAGAGGCCATATATATACACACATT 57.949 33.333 5.01 0.00 0.00 2.71
1396 1537 8.481314 CAGAAGAGGCCATATATATACACACAT 58.519 37.037 5.01 0.00 0.00 3.21
1397 1538 7.454694 ACAGAAGAGGCCATATATATACACACA 59.545 37.037 5.01 0.00 0.00 3.72
1398 1539 7.841956 ACAGAAGAGGCCATATATATACACAC 58.158 38.462 5.01 0.00 0.00 3.82
1399 1540 8.314021 CAACAGAAGAGGCCATATATATACACA 58.686 37.037 5.01 0.00 0.00 3.72
1400 1541 7.766278 CCAACAGAAGAGGCCATATATATACAC 59.234 40.741 5.01 0.00 0.00 2.90
1401 1542 7.457852 ACCAACAGAAGAGGCCATATATATACA 59.542 37.037 5.01 0.00 0.00 2.29
1402 1543 7.766278 CACCAACAGAAGAGGCCATATATATAC 59.234 40.741 5.01 0.00 0.00 1.47
1439 1580 1.482593 AGACATGGATGAACGGGAGAC 59.517 52.381 0.00 0.00 0.00 3.36
1444 1585 3.533606 AAGAGAGACATGGATGAACGG 57.466 47.619 0.00 0.00 0.00 4.44
1445 1586 3.063180 GCAAAGAGAGACATGGATGAACG 59.937 47.826 0.00 0.00 0.00 3.95
1448 1589 4.564782 AAGCAAAGAGAGACATGGATGA 57.435 40.909 0.00 0.00 0.00 2.92
1560 1702 0.384669 CCTCGTGGAAGATACCGACC 59.615 60.000 0.00 0.00 34.57 4.79
1566 1708 0.759436 GGAGGGCCTCGTGGAAGATA 60.759 60.000 26.54 0.00 34.57 1.98
1635 1777 2.103042 GGACATGGTGAGCACGAGC 61.103 63.158 0.00 0.00 42.56 5.03
1636 1778 0.036952 AAGGACATGGTGAGCACGAG 60.037 55.000 0.00 0.00 0.00 4.18
1648 1790 1.274703 ATGTGGGCGAGGAAGGACAT 61.275 55.000 0.00 0.00 0.00 3.06
1656 1798 2.440796 ATGGCAATGTGGGCGAGG 60.441 61.111 0.00 0.00 35.84 4.63
1672 1814 3.483869 GAAGAGGGCGGGGCAGAT 61.484 66.667 0.00 0.00 0.00 2.90
1684 1826 3.787001 GAGGGCGTGGGGGAAGAG 61.787 72.222 0.00 0.00 0.00 2.85
1696 1838 4.475135 GTTGGAGGAGGCGAGGGC 62.475 72.222 0.00 0.00 38.90 5.19
1697 1839 4.148825 CGTTGGAGGAGGCGAGGG 62.149 72.222 0.00 0.00 0.00 4.30
1698 1840 4.821589 GCGTTGGAGGAGGCGAGG 62.822 72.222 0.00 0.00 0.00 4.63
1699 1841 4.821589 GGCGTTGGAGGAGGCGAG 62.822 72.222 0.00 0.00 0.00 5.03
1741 1883 3.056328 GAAGGGTGCCCAGTTCGC 61.056 66.667 10.26 0.00 38.92 4.70
1742 1884 0.955919 GAAGAAGGGTGCCCAGTTCG 60.956 60.000 10.26 0.00 38.92 3.95
1743 1885 0.609406 GGAAGAAGGGTGCCCAGTTC 60.609 60.000 10.26 8.53 38.92 3.01
1744 1886 1.068352 AGGAAGAAGGGTGCCCAGTT 61.068 55.000 10.26 0.00 38.92 3.16
1745 1887 1.464198 AGGAAGAAGGGTGCCCAGT 60.464 57.895 10.26 0.00 38.92 4.00
1746 1888 1.301293 GAGGAAGAAGGGTGCCCAG 59.699 63.158 10.26 0.00 38.92 4.45
1747 1889 2.592993 CGAGGAAGAAGGGTGCCCA 61.593 63.158 10.26 0.00 38.92 5.36
1748 1890 1.262640 TACGAGGAAGAAGGGTGCCC 61.263 60.000 0.00 0.00 0.00 5.36
1749 1891 0.175989 CTACGAGGAAGAAGGGTGCC 59.824 60.000 0.00 0.00 0.00 5.01
1750 1892 1.135333 CTCTACGAGGAAGAAGGGTGC 59.865 57.143 0.00 0.00 0.00 5.01
1762 1904 2.413765 GAAGGCCGCCTCTACGAG 59.586 66.667 13.72 0.00 30.89 4.18
1763 1905 3.145551 GGAAGGCCGCCTCTACGA 61.146 66.667 13.72 0.00 30.89 3.43
1764 1906 3.458163 TGGAAGGCCGCCTCTACG 61.458 66.667 13.72 0.00 36.79 3.51
1765 1907 2.187163 GTGGAAGGCCGCCTCTAC 59.813 66.667 13.72 10.58 38.80 2.59
1773 1915 4.115199 ATGGCGAGGTGGAAGGCC 62.115 66.667 0.00 0.00 45.76 5.19
1774 1916 2.514824 GATGGCGAGGTGGAAGGC 60.515 66.667 0.00 0.00 0.00 4.35
1775 1917 2.202932 CGATGGCGAGGTGGAAGG 60.203 66.667 0.00 0.00 40.82 3.46
1776 1918 2.892425 GCGATGGCGAGGTGGAAG 60.892 66.667 0.00 0.00 40.82 3.46
1777 1919 4.467084 GGCGATGGCGAGGTGGAA 62.467 66.667 0.00 0.00 41.24 3.53
1787 1929 3.642778 AACGACTGGACGGCGATGG 62.643 63.158 16.62 2.98 37.61 3.51
1788 1930 2.126071 AACGACTGGACGGCGATG 60.126 61.111 16.62 2.57 37.61 3.84
1789 1931 2.181021 GAACGACTGGACGGCGAT 59.819 61.111 16.62 0.00 37.61 4.58
1790 1932 4.394078 CGAACGACTGGACGGCGA 62.394 66.667 16.62 0.00 37.36 5.54
1811 1953 3.569049 AAGACGACGAAGGCGGTGG 62.569 63.158 0.00 0.00 43.17 4.61
1812 1954 2.049433 AAGACGACGAAGGCGGTG 60.049 61.111 0.00 0.00 43.17 4.94
1813 1955 2.197643 GAGAAGACGACGAAGGCGGT 62.198 60.000 0.00 0.00 43.17 5.68
1814 1956 1.514443 GAGAAGACGACGAAGGCGG 60.514 63.158 0.00 0.00 43.17 6.13
1815 1957 1.514443 GGAGAAGACGACGAAGGCG 60.514 63.158 0.00 0.00 44.79 5.52
1816 1958 1.514443 CGGAGAAGACGACGAAGGC 60.514 63.158 0.00 0.00 0.00 4.35
1817 1959 0.179194 GACGGAGAAGACGACGAAGG 60.179 60.000 0.00 0.00 34.93 3.46
1818 1960 0.179194 GGACGGAGAAGACGACGAAG 60.179 60.000 0.00 0.00 34.93 3.79
1819 1961 1.871772 GGACGGAGAAGACGACGAA 59.128 57.895 0.00 0.00 34.93 3.85
1820 1962 2.385875 CGGACGGAGAAGACGACGA 61.386 63.158 0.00 0.00 37.40 4.20
1821 1963 2.097918 CGGACGGAGAAGACGACG 59.902 66.667 0.00 0.00 34.93 5.12
1822 1964 2.202453 GCGGACGGAGAAGACGAC 60.202 66.667 0.00 0.00 34.93 4.34
1823 1965 3.437795 GGCGGACGGAGAAGACGA 61.438 66.667 0.00 0.00 34.93 4.20
1824 1966 4.493747 GGGCGGACGGAGAAGACG 62.494 72.222 0.00 0.00 37.36 4.18
1825 1967 4.493747 CGGGCGGACGGAGAAGAC 62.494 72.222 0.00 0.00 0.00 3.01
1844 1986 4.849329 CGTCCCTCACGCCGTAGC 62.849 72.222 0.00 0.00 42.87 3.58
1854 1996 4.933064 CAGGCGCGATCGTCCCTC 62.933 72.222 20.91 3.07 42.15 4.30
1874 2016 3.537206 AAGCTGGTGACCACGAGGC 62.537 63.158 0.00 2.20 37.58 4.70
1875 2017 1.374758 GAAGCTGGTGACCACGAGG 60.375 63.158 0.00 0.00 37.58 4.63
1876 2018 1.734477 CGAAGCTGGTGACCACGAG 60.734 63.158 0.00 7.65 39.70 4.18
1877 2019 2.197605 TCGAAGCTGGTGACCACGA 61.198 57.895 10.48 10.48 0.00 4.35
1878 2020 2.022129 GTCGAAGCTGGTGACCACG 61.022 63.158 0.00 2.59 0.00 4.94
1879 2021 2.022129 CGTCGAAGCTGGTGACCAC 61.022 63.158 0.00 0.00 0.00 4.16
1880 2022 2.338620 CGTCGAAGCTGGTGACCA 59.661 61.111 3.40 3.40 0.00 4.02
1881 2023 3.112709 GCGTCGAAGCTGGTGACC 61.113 66.667 16.42 0.00 0.00 4.02
1882 2024 3.112709 GGCGTCGAAGCTGGTGAC 61.113 66.667 22.38 1.27 37.29 3.67
1883 2025 2.765250 GAAGGCGTCGAAGCTGGTGA 62.765 60.000 22.38 0.00 37.29 4.02
1884 2026 2.357517 AAGGCGTCGAAGCTGGTG 60.358 61.111 22.38 0.00 37.29 4.17
1885 2027 2.048127 GAAGGCGTCGAAGCTGGT 60.048 61.111 22.38 8.33 37.29 4.00
1886 2028 2.815647 GGAAGGCGTCGAAGCTGG 60.816 66.667 22.38 0.00 37.29 4.85
1887 2029 1.807573 GAGGAAGGCGTCGAAGCTG 60.808 63.158 22.38 0.00 37.29 4.24
1888 2030 2.574399 GAGGAAGGCGTCGAAGCT 59.426 61.111 22.38 3.88 37.29 3.74
1889 2031 2.509561 GGAGGAAGGCGTCGAAGC 60.510 66.667 15.40 15.40 0.00 3.86
1890 2032 1.139947 GAGGAGGAAGGCGTCGAAG 59.860 63.158 0.00 0.00 0.00 3.79
1891 2033 2.348888 GGAGGAGGAAGGCGTCGAA 61.349 63.158 0.00 0.00 0.00 3.71
1892 2034 2.754658 GGAGGAGGAAGGCGTCGA 60.755 66.667 0.00 0.00 0.00 4.20
1893 2035 2.756283 AGGAGGAGGAAGGCGTCG 60.756 66.667 0.00 0.00 0.00 5.12
1894 2036 2.428085 GGAGGAGGAGGAAGGCGTC 61.428 68.421 0.00 0.00 0.00 5.19
1895 2037 2.364448 GGAGGAGGAGGAAGGCGT 60.364 66.667 0.00 0.00 0.00 5.68
1896 2038 2.042435 AGGAGGAGGAGGAAGGCG 60.042 66.667 0.00 0.00 0.00 5.52
1897 2039 2.131067 CGAGGAGGAGGAGGAAGGC 61.131 68.421 0.00 0.00 0.00 4.35
1898 2040 1.456705 CCGAGGAGGAGGAGGAAGG 60.457 68.421 0.00 0.00 45.00 3.46
1899 2041 2.131067 GCCGAGGAGGAGGAGGAAG 61.131 68.421 0.00 0.00 45.00 3.46
1900 2042 2.042843 GCCGAGGAGGAGGAGGAA 60.043 66.667 0.00 0.00 45.00 3.36
1901 2043 3.024356 AGCCGAGGAGGAGGAGGA 61.024 66.667 0.00 0.00 45.00 3.71
1902 2044 2.837291 CAGCCGAGGAGGAGGAGG 60.837 72.222 0.00 0.00 45.00 4.30
1903 2045 3.535962 GCAGCCGAGGAGGAGGAG 61.536 72.222 0.00 0.00 45.00 3.69
1904 2046 4.382541 TGCAGCCGAGGAGGAGGA 62.383 66.667 0.00 0.00 45.00 3.71
1905 2047 4.154347 GTGCAGCCGAGGAGGAGG 62.154 72.222 0.00 0.00 45.00 4.30
1906 2048 4.154347 GGTGCAGCCGAGGAGGAG 62.154 72.222 4.03 0.00 45.00 3.69
1954 2096 4.332637 CACCAGCGCCAGTTGCAC 62.333 66.667 2.29 0.00 41.33 4.57
1973 2115 3.420606 CGACCAGCAGCAGCAGTG 61.421 66.667 3.17 0.00 45.49 3.66
1974 2116 4.694233 CCGACCAGCAGCAGCAGT 62.694 66.667 3.17 0.00 45.49 4.40
1975 2117 4.694233 ACCGACCAGCAGCAGCAG 62.694 66.667 3.17 0.00 45.49 4.24
1976 2118 4.994471 CACCGACCAGCAGCAGCA 62.994 66.667 3.17 0.00 45.49 4.41
1983 2125 4.367023 TACACGCCACCGACCAGC 62.367 66.667 0.00 0.00 38.29 4.85
1984 2126 2.430382 AAGTACACGCCACCGACCAG 62.430 60.000 0.00 0.00 38.29 4.00
1985 2127 2.424705 GAAGTACACGCCACCGACCA 62.425 60.000 0.00 0.00 38.29 4.02
1986 2128 1.735559 GAAGTACACGCCACCGACC 60.736 63.158 0.00 0.00 38.29 4.79
1987 2129 2.084681 CGAAGTACACGCCACCGAC 61.085 63.158 0.00 0.00 38.29 4.79
1988 2130 2.256158 CGAAGTACACGCCACCGA 59.744 61.111 0.00 0.00 38.29 4.69
2015 2157 4.760047 ACACCGAGCCGATGTGCC 62.760 66.667 0.00 0.00 33.30 5.01
2016 2158 3.490759 CACACCGAGCCGATGTGC 61.491 66.667 8.80 0.00 37.52 4.57
2017 2159 2.815211 CCACACCGAGCCGATGTG 60.815 66.667 13.34 13.34 42.75 3.21
2018 2160 4.760047 GCCACACCGAGCCGATGT 62.760 66.667 0.00 0.00 0.00 3.06
2035 2177 2.943680 ATCATCACAGAGCCGACGCG 62.944 60.000 3.53 3.53 41.18 6.01
2036 2178 1.227089 ATCATCACAGAGCCGACGC 60.227 57.895 0.00 0.00 0.00 5.19
2037 2179 0.873312 CCATCATCACAGAGCCGACG 60.873 60.000 0.00 0.00 0.00 5.12
2038 2180 0.176680 ACCATCATCACAGAGCCGAC 59.823 55.000 0.00 0.00 0.00 4.79
2039 2181 0.176449 CACCATCATCACAGAGCCGA 59.824 55.000 0.00 0.00 0.00 5.54
2040 2182 1.434622 GCACCATCATCACAGAGCCG 61.435 60.000 0.00 0.00 0.00 5.52
2041 2183 0.107312 AGCACCATCATCACAGAGCC 60.107 55.000 0.00 0.00 0.00 4.70
2042 2184 1.015109 CAGCACCATCATCACAGAGC 58.985 55.000 0.00 0.00 0.00 4.09
2043 2185 1.208776 TCCAGCACCATCATCACAGAG 59.791 52.381 0.00 0.00 0.00 3.35
2044 2186 1.208776 CTCCAGCACCATCATCACAGA 59.791 52.381 0.00 0.00 0.00 3.41
2045 2187 1.664873 CTCCAGCACCATCATCACAG 58.335 55.000 0.00 0.00 0.00 3.66
2046 2188 0.253894 CCTCCAGCACCATCATCACA 59.746 55.000 0.00 0.00 0.00 3.58
2047 2189 0.543277 TCCTCCAGCACCATCATCAC 59.457 55.000 0.00 0.00 0.00 3.06
2048 2190 0.543277 GTCCTCCAGCACCATCATCA 59.457 55.000 0.00 0.00 0.00 3.07
2049 2191 0.531532 CGTCCTCCAGCACCATCATC 60.532 60.000 0.00 0.00 0.00 2.92
2050 2192 1.524002 CGTCCTCCAGCACCATCAT 59.476 57.895 0.00 0.00 0.00 2.45
2051 2193 2.981302 CGTCCTCCAGCACCATCA 59.019 61.111 0.00 0.00 0.00 3.07
2052 2194 2.512515 GCGTCCTCCAGCACCATC 60.513 66.667 0.00 0.00 0.00 3.51
2053 2195 4.101448 GGCGTCCTCCAGCACCAT 62.101 66.667 0.00 0.00 34.54 3.55
2055 2197 4.767255 CAGGCGTCCTCCAGCACC 62.767 72.222 0.00 0.00 34.54 5.01
2056 2198 4.767255 CCAGGCGTCCTCCAGCAC 62.767 72.222 0.00 0.00 34.54 4.40
2083 2225 3.503363 GTCGCTCATGCACAGGGC 61.503 66.667 2.79 2.79 45.13 5.19
2084 2226 3.190849 CGTCGCTCATGCACAGGG 61.191 66.667 5.42 5.42 39.64 4.45
2085 2227 2.125952 TCGTCGCTCATGCACAGG 60.126 61.111 0.00 0.00 39.64 4.00
2086 2228 2.796425 GCTCGTCGCTCATGCACAG 61.796 63.158 0.00 0.00 39.64 3.66
2087 2229 2.810887 GCTCGTCGCTCATGCACA 60.811 61.111 0.00 0.00 39.64 4.57
2110 2252 3.554692 GAACATGCGGGCGTCGAG 61.555 66.667 0.00 0.00 42.43 4.04
2111 2253 4.063967 AGAACATGCGGGCGTCGA 62.064 61.111 0.00 0.00 42.43 4.20
2112 2254 3.853330 CAGAACATGCGGGCGTCG 61.853 66.667 0.00 0.00 42.76 5.12
2113 2255 3.499737 CCAGAACATGCGGGCGTC 61.500 66.667 0.00 0.00 0.00 5.19
2120 2262 4.740822 ACGGGGCCCAGAACATGC 62.741 66.667 30.18 4.40 0.00 4.06
2121 2263 2.438434 GACGGGGCCCAGAACATG 60.438 66.667 30.18 6.60 0.00 3.21
2122 2264 3.728373 GGACGGGGCCCAGAACAT 61.728 66.667 30.18 5.54 0.00 2.71
2163 2305 4.521062 AGGATGCAGCCGACGAGC 62.521 66.667 16.75 0.00 0.00 5.03
2164 2306 2.584418 CAGGATGCAGCCGACGAG 60.584 66.667 16.75 0.49 0.00 4.18
2165 2307 4.147449 CCAGGATGCAGCCGACGA 62.147 66.667 16.75 0.00 31.97 4.20
2174 2316 4.120331 GTTGCACGGCCAGGATGC 62.120 66.667 2.24 7.48 39.88 3.91
2175 2317 2.360350 AGTTGCACGGCCAGGATG 60.360 61.111 2.24 0.00 0.00 3.51
2176 2318 2.360350 CAGTTGCACGGCCAGGAT 60.360 61.111 2.24 0.00 0.00 3.24
2177 2319 4.641645 CCAGTTGCACGGCCAGGA 62.642 66.667 2.24 0.00 0.00 3.86
2183 2325 2.594303 TGAAGGCCAGTTGCACGG 60.594 61.111 5.01 0.00 43.89 4.94
2184 2326 2.949106 CTGAAGGCCAGTTGCACG 59.051 61.111 5.01 0.00 43.89 5.34
2185 2327 2.647297 GCTGAAGGCCAGTTGCAC 59.353 61.111 5.01 0.00 44.71 4.57
2186 2328 2.979676 CGCTGAAGGCCAGTTGCA 60.980 61.111 5.01 0.00 44.71 4.08
2187 2329 4.410743 GCGCTGAAGGCCAGTTGC 62.411 66.667 5.01 2.79 44.71 4.17
2188 2330 4.093952 CGCGCTGAAGGCCAGTTG 62.094 66.667 5.01 0.00 44.71 3.16
2207 2349 0.036483 CATCACATCGTGGACCACCA 60.036 55.000 19.11 6.73 44.76 4.17
2208 2350 0.744414 CCATCACATCGTGGACCACC 60.744 60.000 19.11 1.61 37.72 4.61
2209 2351 0.744414 CCCATCACATCGTGGACCAC 60.744 60.000 15.13 15.13 37.72 4.16
2210 2352 1.601703 CCCATCACATCGTGGACCA 59.398 57.895 0.00 0.00 37.72 4.02
2211 2353 1.819632 GCCCATCACATCGTGGACC 60.820 63.158 0.00 0.00 37.72 4.46
2212 2354 1.819632 GGCCCATCACATCGTGGAC 60.820 63.158 0.00 0.00 37.72 4.02
2213 2355 1.971505 GAGGCCCATCACATCGTGGA 61.972 60.000 0.00 0.00 37.72 4.02
2214 2356 1.524621 GAGGCCCATCACATCGTGG 60.525 63.158 0.00 0.00 33.87 4.94
2215 2357 1.884464 CGAGGCCCATCACATCGTG 60.884 63.158 0.00 0.00 34.45 4.35
2216 2358 2.501128 CGAGGCCCATCACATCGT 59.499 61.111 0.00 0.00 0.00 3.73
2217 2359 2.280389 CCGAGGCCCATCACATCG 60.280 66.667 0.00 0.00 0.00 3.84
2218 2360 2.592861 GCCGAGGCCCATCACATC 60.593 66.667 0.00 0.00 34.56 3.06
2219 2361 4.552365 CGCCGAGGCCCATCACAT 62.552 66.667 8.72 0.00 37.98 3.21
2223 2365 4.899239 CAGACGCCGAGGCCCATC 62.899 72.222 8.72 4.21 37.98 3.51
2233 2375 4.803426 CACTCGGAGCCAGACGCC 62.803 72.222 4.58 0.00 38.78 5.68
2234 2376 4.803426 CCACTCGGAGCCAGACGC 62.803 72.222 4.58 0.00 37.98 5.19
2235 2377 4.803426 GCCACTCGGAGCCAGACG 62.803 72.222 4.58 0.00 0.00 4.18
2255 2397 4.467084 CCGTCATCACCACCCCCG 62.467 72.222 0.00 0.00 0.00 5.73
2256 2398 3.327404 ACCGTCATCACCACCCCC 61.327 66.667 0.00 0.00 0.00 5.40
2257 2399 2.046314 CACCGTCATCACCACCCC 60.046 66.667 0.00 0.00 0.00 4.95
2258 2400 2.046314 CCACCGTCATCACCACCC 60.046 66.667 0.00 0.00 0.00 4.61
2259 2401 2.746277 GCCACCGTCATCACCACC 60.746 66.667 0.00 0.00 0.00 4.61
2260 2402 3.118454 CGCCACCGTCATCACCAC 61.118 66.667 0.00 0.00 0.00 4.16
2262 2404 4.760047 AGCGCCACCGTCATCACC 62.760 66.667 2.29 0.00 36.67 4.02
2263 2405 3.490759 CAGCGCCACCGTCATCAC 61.491 66.667 2.29 0.00 36.67 3.06
2264 2406 4.002506 ACAGCGCCACCGTCATCA 62.003 61.111 2.29 0.00 36.67 3.07
2265 2407 3.490759 CACAGCGCCACCGTCATC 61.491 66.667 2.29 0.00 36.67 2.92
2290 2432 2.439701 CACCAGCCCAGCCATCAG 60.440 66.667 0.00 0.00 0.00 2.90
2322 2464 4.087892 CTCTCGGGGTGGTGGCTG 62.088 72.222 0.00 0.00 0.00 4.85
2340 2482 1.200839 GTTGGCGACGTTGACGAAG 59.799 57.895 7.08 4.78 43.02 3.79
2341 2483 2.578679 CGTTGGCGACGTTGACGAA 61.579 57.895 19.03 0.00 46.49 3.85
2385 2527 2.795175 ATTCTACCATCGGTGCTACG 57.205 50.000 0.00 0.00 36.19 3.51
2430 2572 5.596836 AGTCTCTTAAGATCTTCTGCAGG 57.403 43.478 12.24 0.00 33.08 4.85
2436 2578 6.315891 AGCATGCAAAGTCTCTTAAGATCTTC 59.684 38.462 21.98 0.00 33.08 2.87
2440 2582 5.125097 CCAAGCATGCAAAGTCTCTTAAGAT 59.875 40.000 21.98 0.00 33.08 2.40
2441 2583 4.456911 CCAAGCATGCAAAGTCTCTTAAGA 59.543 41.667 21.98 4.81 0.00 2.10
2443 2585 3.507233 CCCAAGCATGCAAAGTCTCTTAA 59.493 43.478 21.98 0.00 0.00 1.85
2444 2586 3.084039 CCCAAGCATGCAAAGTCTCTTA 58.916 45.455 21.98 0.00 0.00 2.10
2445 2587 1.891150 CCCAAGCATGCAAAGTCTCTT 59.109 47.619 21.98 0.00 0.00 2.85
2446 2588 1.074405 TCCCAAGCATGCAAAGTCTCT 59.926 47.619 21.98 0.00 0.00 3.10
2448 2590 2.226962 ATCCCAAGCATGCAAAGTCT 57.773 45.000 21.98 0.00 0.00 3.24
2449 2591 2.997986 CAAATCCCAAGCATGCAAAGTC 59.002 45.455 21.98 0.00 0.00 3.01
2450 2592 2.369532 ACAAATCCCAAGCATGCAAAGT 59.630 40.909 21.98 0.00 0.00 2.66
2454 2596 3.098377 ACATACAAATCCCAAGCATGCA 58.902 40.909 21.98 0.00 0.00 3.96
2455 2597 3.450578 CACATACAAATCCCAAGCATGC 58.549 45.455 10.51 10.51 0.00 4.06
2456 2598 3.450578 GCACATACAAATCCCAAGCATG 58.549 45.455 0.00 0.00 0.00 4.06
2457 2599 2.431782 GGCACATACAAATCCCAAGCAT 59.568 45.455 0.00 0.00 0.00 3.79
2458 2600 1.824230 GGCACATACAAATCCCAAGCA 59.176 47.619 0.00 0.00 0.00 3.91
2459 2601 1.824230 TGGCACATACAAATCCCAAGC 59.176 47.619 0.00 0.00 0.00 4.01
2460 2602 2.824936 TGTGGCACATACAAATCCCAAG 59.175 45.455 17.96 0.00 44.52 3.61
2461 2603 2.881734 TGTGGCACATACAAATCCCAA 58.118 42.857 17.96 0.00 44.52 4.12
2462 2604 2.593925 TGTGGCACATACAAATCCCA 57.406 45.000 17.96 0.00 44.52 4.37
2463 2605 3.258123 ACTTTGTGGCACATACAAATCCC 59.742 43.478 22.73 0.00 44.32 3.85
2468 2610 6.619744 CAATCATACTTTGTGGCACATACAA 58.380 36.000 22.73 12.03 44.52 2.41
2469 2611 5.392919 GCAATCATACTTTGTGGCACATACA 60.393 40.000 22.73 3.32 44.52 2.29
2471 2613 4.949238 AGCAATCATACTTTGTGGCACATA 59.051 37.500 22.73 16.02 44.52 2.29
2472 2614 3.765511 AGCAATCATACTTTGTGGCACAT 59.234 39.130 22.73 9.46 44.52 3.21
2473 2615 3.057386 CAGCAATCATACTTTGTGGCACA 60.057 43.478 17.96 17.96 0.00 4.57
2474 2616 3.191162 TCAGCAATCATACTTTGTGGCAC 59.809 43.478 11.55 11.55 0.00 5.01
2475 2617 3.419943 TCAGCAATCATACTTTGTGGCA 58.580 40.909 0.00 0.00 0.00 4.92
2479 2621 5.909621 AATGCTCAGCAATCATACTTTGT 57.090 34.783 1.73 0.00 43.62 2.83
2480 2622 5.518847 CCAAATGCTCAGCAATCATACTTTG 59.481 40.000 1.73 8.07 43.62 2.77
2484 2756 4.906065 TCCAAATGCTCAGCAATCATAC 57.094 40.909 1.73 0.00 43.62 2.39
2486 2758 5.509163 GCTAATCCAAATGCTCAGCAATCAT 60.509 40.000 1.73 0.00 43.62 2.45
2493 2765 2.686405 TGCAGCTAATCCAAATGCTCAG 59.314 45.455 0.00 0.00 37.76 3.35
2495 2767 3.317149 TGATGCAGCTAATCCAAATGCTC 59.683 43.478 2.53 0.00 37.76 4.26
2546 2822 6.681777 CAGGAAGAAATTAAACACTCTTGGG 58.318 40.000 0.00 0.00 0.00 4.12
2599 2876 1.541379 AATCTCAAGCATGCACAGCA 58.459 45.000 21.98 0.24 44.86 4.41
2600 2877 2.259618 CAAATCTCAAGCATGCACAGC 58.740 47.619 21.98 4.87 0.00 4.40
3140 3417 4.796231 CTCCAACGTCGAGGCGGG 62.796 72.222 4.75 7.15 35.98 6.13
3141 3418 4.796231 CCTCCAACGTCGAGGCGG 62.796 72.222 16.31 6.43 40.55 6.13
3215 3492 4.767255 CCACAGAGGGCCTGCGTC 62.767 72.222 12.95 0.00 46.81 5.19
3238 3515 3.973267 GACAGCTCCGGCGACAGAC 62.973 68.421 9.30 0.49 44.37 3.51
3239 3516 3.749064 GACAGCTCCGGCGACAGA 61.749 66.667 9.30 0.00 44.37 3.41
3251 3528 3.145422 GAGAGGGGCTAGCGACAGC 62.145 68.421 9.00 0.34 45.58 4.40
3252 3529 2.494530 GGAGAGGGGCTAGCGACAG 61.495 68.421 9.00 0.00 0.00 3.51
3253 3530 2.442272 GGAGAGGGGCTAGCGACA 60.442 66.667 9.00 0.00 0.00 4.35
3254 3531 2.442272 TGGAGAGGGGCTAGCGAC 60.442 66.667 9.00 3.91 0.00 5.19
3255 3532 2.012824 ATCTGGAGAGGGGCTAGCGA 62.013 60.000 9.00 0.00 0.00 4.93
3256 3533 1.531739 GATCTGGAGAGGGGCTAGCG 61.532 65.000 9.00 0.00 0.00 4.26
3257 3534 1.191489 GGATCTGGAGAGGGGCTAGC 61.191 65.000 6.04 6.04 0.00 3.42
3258 3535 0.897863 CGGATCTGGAGAGGGGCTAG 60.898 65.000 0.00 0.00 0.00 3.42
3259 3536 1.153989 CGGATCTGGAGAGGGGCTA 59.846 63.158 0.00 0.00 0.00 3.93
3260 3537 2.123077 CGGATCTGGAGAGGGGCT 60.123 66.667 0.00 0.00 0.00 5.19
3261 3538 3.237741 CCGGATCTGGAGAGGGGC 61.238 72.222 16.28 0.00 0.00 5.80
3262 3539 2.136878 CACCGGATCTGGAGAGGGG 61.137 68.421 27.90 5.31 0.00 4.79
3263 3540 1.381872 ACACCGGATCTGGAGAGGG 60.382 63.158 27.90 12.42 0.00 4.30
3264 3541 1.680522 CCACACCGGATCTGGAGAGG 61.681 65.000 27.90 22.16 36.56 3.69
3265 3542 1.680522 CCCACACCGGATCTGGAGAG 61.681 65.000 27.90 17.24 36.56 3.20
3266 3543 1.685765 CCCACACCGGATCTGGAGA 60.686 63.158 27.90 0.00 36.56 3.71
3267 3544 2.735772 CCCCACACCGGATCTGGAG 61.736 68.421 27.90 21.56 36.56 3.86
3268 3545 2.687200 CCCCACACCGGATCTGGA 60.687 66.667 27.90 0.00 36.56 3.86
3269 3546 3.797353 CCCCCACACCGGATCTGG 61.797 72.222 19.66 19.66 36.56 3.86
3270 3547 3.009115 ACCCCCACACCGGATCTG 61.009 66.667 9.46 0.00 36.56 2.90
3271 3548 2.687566 GACCCCCACACCGGATCT 60.688 66.667 9.46 0.00 36.56 2.75
3272 3549 2.687566 AGACCCCCACACCGGATC 60.688 66.667 9.46 0.00 36.56 3.36
3273 3550 2.687566 GAGACCCCCACACCGGAT 60.688 66.667 9.46 0.00 36.56 4.18
3276 3553 3.706373 CAGGAGACCCCCACACCG 61.706 72.222 0.00 0.00 34.66 4.94
3277 3554 3.330720 CCAGGAGACCCCCACACC 61.331 72.222 0.00 0.00 34.66 4.16
3278 3555 3.330720 CCCAGGAGACCCCCACAC 61.331 72.222 0.00 0.00 34.66 3.82
3279 3556 3.121868 TTCCCAGGAGACCCCCACA 62.122 63.158 0.00 0.00 34.66 4.17
3280 3557 2.204090 TTCCCAGGAGACCCCCAC 60.204 66.667 0.00 0.00 34.66 4.61
3281 3558 2.124996 CTTCCCAGGAGACCCCCA 59.875 66.667 0.00 0.00 34.66 4.96
3282 3559 2.692741 CCTTCCCAGGAGACCCCC 60.693 72.222 0.00 0.00 44.19 5.40
3283 3560 1.996187 GACCTTCCCAGGAGACCCC 60.996 68.421 0.00 0.00 44.19 4.95
3284 3561 1.996187 GGACCTTCCCAGGAGACCC 60.996 68.421 0.00 0.00 44.19 4.46
3285 3562 2.359967 CGGACCTTCCCAGGAGACC 61.360 68.421 0.00 0.00 44.19 3.85
3286 3563 1.305046 TCGGACCTTCCCAGGAGAC 60.305 63.158 0.00 0.00 44.19 3.36
3287 3564 1.305046 GTCGGACCTTCCCAGGAGA 60.305 63.158 0.00 0.00 44.19 3.71
3288 3565 1.305381 AGTCGGACCTTCCCAGGAG 60.305 63.158 4.14 0.00 44.19 3.69
3289 3566 1.609501 CAGTCGGACCTTCCCAGGA 60.610 63.158 4.14 0.00 44.19 3.86
3291 3568 2.266055 GCAGTCGGACCTTCCCAG 59.734 66.667 4.14 0.00 31.13 4.45
3292 3569 3.319198 GGCAGTCGGACCTTCCCA 61.319 66.667 4.14 0.00 31.13 4.37
3293 3570 3.316573 CTGGCAGTCGGACCTTCCC 62.317 68.421 6.28 1.10 31.13 3.97
3294 3571 1.617947 ATCTGGCAGTCGGACCTTCC 61.618 60.000 15.27 4.39 32.83 3.46
3295 3572 0.179097 GATCTGGCAGTCGGACCTTC 60.179 60.000 15.27 0.00 32.83 3.46
3296 3573 0.904865 TGATCTGGCAGTCGGACCTT 60.905 55.000 15.27 0.00 32.83 3.50
3297 3574 1.305297 TGATCTGGCAGTCGGACCT 60.305 57.895 15.27 0.00 32.83 3.85
3298 3575 1.142748 CTGATCTGGCAGTCGGACC 59.857 63.158 15.27 0.00 32.83 4.46
3299 3576 1.142748 CCTGATCTGGCAGTCGGAC 59.857 63.158 15.27 0.00 34.06 4.79
3300 3577 3.621225 CCTGATCTGGCAGTCGGA 58.379 61.111 15.27 0.00 34.06 4.55
3308 3585 4.598894 CGAGCCGGCCTGATCTGG 62.599 72.222 26.15 14.07 35.57 3.86
3309 3586 4.598894 CCGAGCCGGCCTGATCTG 62.599 72.222 26.15 6.63 41.17 2.90
3343 3620 4.527583 CAGCCGCCAGAGAGGAGC 62.528 72.222 0.00 0.00 41.22 4.70
3344 3621 3.847602 CCAGCCGCCAGAGAGGAG 61.848 72.222 0.00 0.00 41.22 3.69
3345 3622 4.704103 ACCAGCCGCCAGAGAGGA 62.704 66.667 0.00 0.00 41.22 3.71
3346 3623 4.463879 CACCAGCCGCCAGAGAGG 62.464 72.222 0.00 0.00 41.84 3.69
3347 3624 4.463879 CCACCAGCCGCCAGAGAG 62.464 72.222 0.00 0.00 0.00 3.20
3371 3648 4.664677 CGGGTGGATCCGGCGATC 62.665 72.222 9.30 9.61 45.78 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.