Multiple sequence alignment - TraesCS7D01G462200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G462200 chr7D 100.000 4184 0 0 1 4184 577960979 577965162 0.000000e+00 7727.0
1 TraesCS7D01G462200 chr7D 94.630 1676 56 16 1701 3350 578164352 578162685 0.000000e+00 2566.0
2 TraesCS7D01G462200 chr7D 93.267 1604 75 18 123 1697 578166251 578164652 0.000000e+00 2333.0
3 TraesCS7D01G462200 chr7D 80.321 1931 214 72 477 2314 577919958 577921815 0.000000e+00 1308.0
4 TraesCS7D01G462200 chr7D 83.753 874 102 12 776 1613 577882251 577883120 0.000000e+00 791.0
5 TraesCS7D01G462200 chr7D 90.556 593 39 8 2828 3406 577991985 577992574 0.000000e+00 769.0
6 TraesCS7D01G462200 chr7D 89.280 597 38 15 2829 3403 577989424 577990016 0.000000e+00 725.0
7 TraesCS7D01G462200 chr7D 79.641 1002 149 20 2419 3394 578465151 578466123 0.000000e+00 669.0
8 TraesCS7D01G462200 chr7D 81.980 505 60 22 1 481 577919439 577919936 2.340000e-107 399.0
9 TraesCS7D01G462200 chr7D 82.645 242 36 5 1608 1848 577884852 577885088 4.240000e-50 209.0
10 TraesCS7D01G462200 chr7D 90.756 119 9 2 1 118 577881402 577881519 1.560000e-34 158.0
11 TraesCS7D01G462200 chr7D 96.552 58 2 0 4031 4088 578008758 578008815 3.440000e-16 97.1
12 TraesCS7D01G462200 chr7A 89.686 1881 110 36 1554 3406 670343184 670341360 0.000000e+00 2322.0
13 TraesCS7D01G462200 chr7A 80.249 1929 217 76 477 2314 670165416 670167271 0.000000e+00 1301.0
14 TraesCS7D01G462200 chr7A 91.568 759 31 16 1 726 670344718 670343960 0.000000e+00 1016.0
15 TraesCS7D01G462200 chr7A 87.913 786 61 7 769 1522 670343965 670343182 0.000000e+00 894.0
16 TraesCS7D01G462200 chr7A 96.610 472 10 3 3404 3869 670340922 670340451 0.000000e+00 778.0
17 TraesCS7D01G462200 chr7A 80.769 1014 150 20 2419 3406 670536683 670537677 0.000000e+00 750.0
18 TraesCS7D01G462200 chr7A 89.579 451 45 2 2828 3278 670289845 670289397 4.690000e-159 571.0
19 TraesCS7D01G462200 chr7A 96.835 158 1 1 4027 4184 670327509 670327356 1.150000e-65 261.0
20 TraesCS7D01G462200 chr7A 82.456 114 5 6 3865 3964 670327992 670327880 7.450000e-13 86.1
21 TraesCS7D01G462200 chr7B 93.193 1043 60 5 473 1515 642078855 642077824 0.000000e+00 1522.0
22 TraesCS7D01G462200 chr7B 91.121 1070 63 10 1181 2237 641459497 641460547 0.000000e+00 1421.0
23 TraesCS7D01G462200 chr7B 80.909 1980 205 70 1 1881 641744524 641742619 0.000000e+00 1402.0
24 TraesCS7D01G462200 chr7B 90.192 1091 52 19 2337 3406 642077111 642076055 0.000000e+00 1371.0
25 TraesCS7D01G462200 chr7B 79.783 1934 210 81 477 2314 641366946 641368794 0.000000e+00 1238.0
26 TraesCS7D01G462200 chr7B 80.690 1015 151 25 2419 3406 642261201 642262197 0.000000e+00 747.0
27 TraesCS7D01G462200 chr7B 84.832 745 64 12 1554 2288 642077819 642077114 0.000000e+00 704.0
28 TraesCS7D01G462200 chr7B 87.102 597 52 12 2828 3407 641554873 641555461 0.000000e+00 652.0
29 TraesCS7D01G462200 chr7B 91.807 476 24 6 2324 2791 641460543 641461011 0.000000e+00 649.0
30 TraesCS7D01G462200 chr7B 88.302 530 33 4 352 856 641456896 641457421 3.580000e-170 608.0
31 TraesCS7D01G462200 chr7B 94.633 354 17 2 1 353 641456277 641456629 7.910000e-152 547.0
32 TraesCS7D01G462200 chr7B 91.710 386 11 12 1 386 642079298 642078934 2.230000e-142 516.0
33 TraesCS7D01G462200 chr7B 82.807 570 95 2 2526 3095 641368976 641369542 1.340000e-139 507.0
34 TraesCS7D01G462200 chr7B 91.584 202 7 6 3834 4031 641461036 641461231 1.920000e-68 270.0
35 TraesCS7D01G462200 chr7B 80.894 246 21 16 3439 3665 642075576 642075338 2.000000e-38 171.0
36 TraesCS7D01G462200 chr7B 94.059 101 3 1 4024 4121 641480621 641480721 2.610000e-32 150.0
37 TraesCS7D01G462200 chr7B 97.403 77 2 0 4107 4183 641482032 641482108 9.440000e-27 132.0
38 TraesCS7D01G462200 chr7B 83.962 106 13 2 3799 3901 641546638 641546742 9.570000e-17 99.0
39 TraesCS7D01G462200 chr7B 89.189 74 3 2 408 481 642078941 642078873 2.070000e-13 87.9
40 TraesCS7D01G462200 chr7B 90.000 60 2 2 4085 4143 641552385 641552441 1.610000e-09 75.0
41 TraesCS7D01G462200 chr7B 89.831 59 2 1 3849 3907 642074848 642074794 5.800000e-09 73.1
42 TraesCS7D01G462200 chr7B 85.000 60 1 5 4029 4088 641552324 641552375 2.000000e-03 54.7
43 TraesCS7D01G462200 chr3D 80.695 1927 210 71 477 2314 55154491 55156344 0.000000e+00 1349.0
44 TraesCS7D01G462200 chr3D 81.961 571 92 7 2526 3095 55156543 55157103 1.360000e-129 473.0
45 TraesCS7D01G462200 chr3D 81.782 505 61 22 1 481 55153972 55154469 1.090000e-105 394.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G462200 chr7D 577960979 577965162 4183 False 7727.000000 7727 100.000000 1 4184 1 chr7D.!!$F1 4183
1 TraesCS7D01G462200 chr7D 578162685 578166251 3566 True 2449.500000 2566 93.948500 123 3350 2 chr7D.!!$R1 3227
2 TraesCS7D01G462200 chr7D 577919439 577921815 2376 False 853.500000 1308 81.150500 1 2314 2 chr7D.!!$F5 2313
3 TraesCS7D01G462200 chr7D 577989424 577992574 3150 False 747.000000 769 89.918000 2828 3406 2 chr7D.!!$F6 578
4 TraesCS7D01G462200 chr7D 578465151 578466123 972 False 669.000000 669 79.641000 2419 3394 1 chr7D.!!$F3 975
5 TraesCS7D01G462200 chr7D 577881402 577885088 3686 False 386.000000 791 85.718000 1 1848 3 chr7D.!!$F4 1847
6 TraesCS7D01G462200 chr7A 670165416 670167271 1855 False 1301.000000 1301 80.249000 477 2314 1 chr7A.!!$F1 1837
7 TraesCS7D01G462200 chr7A 670340451 670344718 4267 True 1252.500000 2322 91.444250 1 3869 4 chr7A.!!$R3 3868
8 TraesCS7D01G462200 chr7A 670536683 670537677 994 False 750.000000 750 80.769000 2419 3406 1 chr7A.!!$F2 987
9 TraesCS7D01G462200 chr7B 641742619 641744524 1905 True 1402.000000 1402 80.909000 1 1881 1 chr7B.!!$R1 1880
10 TraesCS7D01G462200 chr7B 641366946 641369542 2596 False 872.500000 1238 81.295000 477 3095 2 chr7B.!!$F3 2618
11 TraesCS7D01G462200 chr7B 642261201 642262197 996 False 747.000000 747 80.690000 2419 3406 1 chr7B.!!$F2 987
12 TraesCS7D01G462200 chr7B 641456277 641461231 4954 False 699.000000 1421 91.489400 1 4031 5 chr7B.!!$F4 4030
13 TraesCS7D01G462200 chr7B 642074794 642079298 4504 True 635.000000 1522 88.548714 1 3907 7 chr7B.!!$R2 3906
14 TraesCS7D01G462200 chr7B 641552324 641555461 3137 False 260.566667 652 87.367333 2828 4143 3 chr7B.!!$F6 1315
15 TraesCS7D01G462200 chr3D 55153972 55157103 3131 False 738.666667 1349 81.479333 1 3095 3 chr3D.!!$F1 3094

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 1072 1.379443 CCACAGCTGTGCCCATCAT 60.379 57.895 36.38 1.14 44.34 2.45 F
2434 7027 0.535102 AAGACGGTCTTGGCAACCTG 60.535 55.000 21.86 3.53 34.98 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2549 7156 0.544833 ATTTGCAGGGAATGGTGGCA 60.545 50.0 0.00 0.00 0.00 4.92 R
4129 12237 0.099791 CGTGCATGCATGATTCAGCA 59.900 50.0 31.95 16.63 45.92 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 219 5.353678 AGCAACTTGTCTTCTGCATCTATTC 59.646 40.000 0.00 0.00 37.26 1.75
303 392 8.623903 TGTTCATTTTGAATATCCTATGCTGTC 58.376 33.333 0.00 0.00 38.79 3.51
440 797 3.299503 ACTGGTGTTGATCCTTTTGCTT 58.700 40.909 0.00 0.00 0.00 3.91
656 1072 1.379443 CCACAGCTGTGCCCATCAT 60.379 57.895 36.38 1.14 44.34 2.45
657 1073 1.381928 CCACAGCTGTGCCCATCATC 61.382 60.000 36.38 0.00 44.34 2.92
675 1091 3.887110 TCATCGGAACTAAAGCGGATCTA 59.113 43.478 0.00 0.00 0.00 1.98
683 1099 6.183360 GGAACTAAAGCGGATCTACCTAGAAA 60.183 42.308 0.00 0.00 35.69 2.52
1171 3601 4.081917 TCAATATGGTGTCAGCAGTCGTTA 60.082 41.667 10.94 0.00 0.00 3.18
1298 3728 7.282224 TCAGGTTAGCATATGATTTGGTTGTAC 59.718 37.037 6.97 0.00 0.00 2.90
1306 3736 8.556194 GCATATGATTTGGTTGTACGAAGATTA 58.444 33.333 6.97 0.00 0.00 1.75
1344 3774 9.978044 TCTGTATCACTATCAATCTCAAATCTG 57.022 33.333 0.00 0.00 0.00 2.90
1361 3791 8.420374 TCAAATCTGACTATTCGTATTGAACC 57.580 34.615 0.00 0.00 40.00 3.62
1382 3812 3.998672 GGTCGAAGCGGTCCCACA 61.999 66.667 0.00 0.00 0.00 4.17
1437 3871 1.812571 GGCAACCTCGTGTGAATGATT 59.187 47.619 0.00 0.00 0.00 2.57
1597 4038 3.923461 GCTCTGTATATTCATGTCCGCTC 59.077 47.826 0.00 0.00 0.00 5.03
1713 6188 2.870175 TGATCCGTTTCCACCATTGTT 58.130 42.857 0.00 0.00 0.00 2.83
1752 6231 9.889128 TCATTTTTCTTTCTTCAAAACCATCTT 57.111 25.926 0.00 0.00 0.00 2.40
1798 6277 4.729868 TCCACTCTCTAGCTATATGTGCA 58.270 43.478 0.00 0.00 0.00 4.57
1850 6333 5.557866 AGTTAGAAACCACCATTACCACTC 58.442 41.667 0.00 0.00 0.00 3.51
1870 6353 6.072286 CCACTCTCAATTGCTTGTGTAATCTT 60.072 38.462 17.00 0.00 33.87 2.40
2148 6661 5.955488 TGCTCTAGTGCTGTTACTTAGAAG 58.045 41.667 17.08 0.00 32.19 2.85
2155 6668 6.393990 AGTGCTGTTACTTAGAAGTGATCTG 58.606 40.000 5.15 1.93 40.07 2.90
2271 6792 7.037438 GCCACAAATGTTCACATTCATCTAAT 58.963 34.615 5.64 0.00 45.06 1.73
2273 6794 8.245491 CCACAAATGTTCACATTCATCTAATGA 58.755 33.333 5.64 0.00 46.81 2.57
2314 6835 2.022195 TGTAACCTAGGACGCTAGCAG 58.978 52.381 17.98 10.16 0.00 4.24
2315 6836 1.030457 TAACCTAGGACGCTAGCAGC 58.970 55.000 17.98 5.35 38.02 5.25
2434 7027 0.535102 AAGACGGTCTTGGCAACCTG 60.535 55.000 21.86 3.53 34.98 4.00
2549 7156 1.973281 CTGCCGGTTCACAGCCAAT 60.973 57.895 1.90 0.00 0.00 3.16
3243 10449 2.683211 AGCCAGGACATCCAAAGTTT 57.317 45.000 0.00 0.00 38.89 2.66
3321 10541 1.978580 ACGGGAGAGATTGACTGGTTT 59.021 47.619 0.00 0.00 0.00 3.27
3387 10617 2.787473 ATGCTTCGAGACCAATTGGA 57.213 45.000 31.22 4.95 38.94 3.53
3436 11179 4.261489 CGTACTACCTCTGTGTTGACTGTT 60.261 45.833 0.00 0.00 0.00 3.16
3479 11222 2.304092 TCCTATCGTTGAGTGGCGTAT 58.696 47.619 0.00 0.00 0.00 3.06
3578 11324 8.556194 TGTGAAATTATTACAGTTGATATCGGC 58.444 33.333 0.00 0.00 0.00 5.54
3716 11492 1.973281 CATGTGGGGTGCCAGTGTC 60.973 63.158 0.00 0.00 0.00 3.67
3762 11538 3.382832 CCCGAGACCGACTGGCTT 61.383 66.667 0.00 0.00 39.70 4.35
3771 11547 0.460987 CCGACTGGCTTGATGAGTCC 60.461 60.000 0.00 0.00 33.87 3.85
3907 12013 3.138798 GCATCAGTGGCAGGGCAG 61.139 66.667 0.00 0.00 0.00 4.85
3908 12014 2.439701 CATCAGTGGCAGGGCAGG 60.440 66.667 0.00 0.00 0.00 4.85
3909 12015 3.736224 ATCAGTGGCAGGGCAGGG 61.736 66.667 0.00 0.00 0.00 4.45
3943 12049 1.153997 GGAGAGCAAGACGACCGTC 60.154 63.158 14.03 14.03 44.86 4.79
3944 12050 1.153997 GAGAGCAAGACGACCGTCC 60.154 63.158 17.62 4.36 45.59 4.79
3945 12051 2.504244 GAGCAAGACGACCGTCCG 60.504 66.667 17.62 11.14 45.59 4.79
3946 12052 3.264866 GAGCAAGACGACCGTCCGT 62.265 63.158 17.62 4.92 45.59 4.69
3947 12053 3.103911 GCAAGACGACCGTCCGTG 61.104 66.667 17.62 16.31 45.59 4.94
3948 12054 2.430244 CAAGACGACCGTCCGTGG 60.430 66.667 17.62 3.09 45.59 4.94
3965 12072 3.251571 CGTGGTGCTAGAAACTTCCTAC 58.748 50.000 0.00 0.00 0.00 3.18
4026 12134 4.436998 GGACCGACTGGCCGAGTG 62.437 72.222 11.89 2.71 39.70 3.51
4027 12135 3.681835 GACCGACTGGCCGAGTGT 61.682 66.667 11.89 5.54 39.70 3.55
4028 12136 3.916392 GACCGACTGGCCGAGTGTG 62.916 68.421 11.89 6.03 39.70 3.82
4029 12137 3.680786 CCGACTGGCCGAGTGTGA 61.681 66.667 11.89 0.00 33.83 3.58
4032 12140 0.670546 CGACTGGCCGAGTGTGAAAT 60.671 55.000 11.89 0.00 33.83 2.17
4033 12141 0.798776 GACTGGCCGAGTGTGAAATG 59.201 55.000 11.89 0.00 33.83 2.32
4034 12142 0.396435 ACTGGCCGAGTGTGAAATGA 59.604 50.000 7.00 0.00 31.75 2.57
4035 12143 1.003580 ACTGGCCGAGTGTGAAATGAT 59.996 47.619 7.00 0.00 31.75 2.45
4036 12144 2.236146 ACTGGCCGAGTGTGAAATGATA 59.764 45.455 7.00 0.00 31.75 2.15
4037 12145 2.868583 CTGGCCGAGTGTGAAATGATAG 59.131 50.000 0.00 0.00 0.00 2.08
4038 12146 1.599542 GGCCGAGTGTGAAATGATAGC 59.400 52.381 0.00 0.00 0.00 2.97
4039 12147 2.555199 GCCGAGTGTGAAATGATAGCT 58.445 47.619 0.00 0.00 0.00 3.32
4040 12148 2.939103 GCCGAGTGTGAAATGATAGCTT 59.061 45.455 0.00 0.00 0.00 3.74
4041 12149 3.375299 GCCGAGTGTGAAATGATAGCTTT 59.625 43.478 0.00 0.00 0.00 3.51
4042 12150 4.142600 GCCGAGTGTGAAATGATAGCTTTT 60.143 41.667 0.00 0.00 0.00 2.27
4043 12151 5.327091 CCGAGTGTGAAATGATAGCTTTTG 58.673 41.667 0.00 0.00 0.00 2.44
4044 12152 5.106555 CCGAGTGTGAAATGATAGCTTTTGT 60.107 40.000 0.00 0.00 0.00 2.83
4045 12153 6.092122 CCGAGTGTGAAATGATAGCTTTTGTA 59.908 38.462 0.00 0.00 0.00 2.41
4046 12154 7.201644 CCGAGTGTGAAATGATAGCTTTTGTAT 60.202 37.037 0.00 0.00 0.00 2.29
4047 12155 7.637519 CGAGTGTGAAATGATAGCTTTTGTATG 59.362 37.037 0.00 0.00 0.00 2.39
4048 12156 8.340618 AGTGTGAAATGATAGCTTTTGTATGT 57.659 30.769 0.00 0.00 0.00 2.29
4049 12157 9.448438 AGTGTGAAATGATAGCTTTTGTATGTA 57.552 29.630 0.00 0.00 0.00 2.29
4050 12158 9.490663 GTGTGAAATGATAGCTTTTGTATGTAC 57.509 33.333 0.00 0.00 0.00 2.90
4051 12159 9.225436 TGTGAAATGATAGCTTTTGTATGTACA 57.775 29.630 0.00 0.00 0.00 2.90
4052 12160 9.708222 GTGAAATGATAGCTTTTGTATGTACAG 57.292 33.333 0.33 0.00 37.52 2.74
4053 12161 9.665719 TGAAATGATAGCTTTTGTATGTACAGA 57.334 29.630 0.33 0.00 37.52 3.41
4055 12163 8.668510 AATGATAGCTTTTGTATGTACAGAGG 57.331 34.615 0.33 0.22 37.52 3.69
4056 12164 6.049149 TGATAGCTTTTGTATGTACAGAGGC 58.951 40.000 0.33 9.00 41.60 4.70
4057 12165 4.559862 AGCTTTTGTATGTACAGAGGCT 57.440 40.909 12.52 12.52 44.83 4.58
4058 12166 5.677319 AGCTTTTGTATGTACAGAGGCTA 57.323 39.130 15.50 0.00 46.69 3.93
4059 12167 5.665459 AGCTTTTGTATGTACAGAGGCTAG 58.335 41.667 15.50 0.00 46.69 3.42
4060 12168 4.271291 GCTTTTGTATGTACAGAGGCTAGC 59.729 45.833 6.04 6.04 39.33 3.42
4061 12169 5.665459 CTTTTGTATGTACAGAGGCTAGCT 58.335 41.667 15.72 0.00 37.52 3.32
4062 12170 4.655762 TTGTATGTACAGAGGCTAGCTG 57.344 45.455 15.72 7.84 37.52 4.24
4064 12172 4.023980 TGTATGTACAGAGGCTAGCTGTT 58.976 43.478 15.72 0.21 43.67 3.16
4065 12173 3.533606 ATGTACAGAGGCTAGCTGTTG 57.466 47.619 15.72 12.29 43.67 3.33
4066 12174 1.066858 TGTACAGAGGCTAGCTGTTGC 60.067 52.381 15.72 8.42 43.67 4.17
4067 12175 1.066858 GTACAGAGGCTAGCTGTTGCA 60.067 52.381 15.72 0.00 43.67 4.08
4068 12176 0.397941 ACAGAGGCTAGCTGTTGCAA 59.602 50.000 15.72 0.00 43.67 4.08
4069 12177 1.085091 CAGAGGCTAGCTGTTGCAAG 58.915 55.000 15.72 0.00 42.74 4.01
4070 12178 0.689623 AGAGGCTAGCTGTTGCAAGT 59.310 50.000 15.72 0.00 42.74 3.16
4071 12179 1.072965 AGAGGCTAGCTGTTGCAAGTT 59.927 47.619 15.72 0.00 42.74 2.66
4072 12180 1.882623 GAGGCTAGCTGTTGCAAGTTT 59.117 47.619 15.72 0.00 42.74 2.66
4073 12181 2.294512 GAGGCTAGCTGTTGCAAGTTTT 59.705 45.455 15.72 0.00 42.74 2.43
4074 12182 2.035066 AGGCTAGCTGTTGCAAGTTTTG 59.965 45.455 15.72 0.00 42.74 2.44
4075 12183 2.397549 GCTAGCTGTTGCAAGTTTTGG 58.602 47.619 7.70 0.00 42.74 3.28
4076 12184 2.034558 GCTAGCTGTTGCAAGTTTTGGA 59.965 45.455 7.70 0.00 42.74 3.53
4077 12185 3.490761 GCTAGCTGTTGCAAGTTTTGGAA 60.491 43.478 7.70 0.00 42.74 3.53
4078 12186 3.169355 AGCTGTTGCAAGTTTTGGAAG 57.831 42.857 0.00 0.00 41.75 3.46
4079 12187 2.760092 AGCTGTTGCAAGTTTTGGAAGA 59.240 40.909 0.00 0.00 41.75 2.87
4080 12188 2.860136 GCTGTTGCAAGTTTTGGAAGAC 59.140 45.455 0.00 0.00 41.75 3.01
4081 12189 3.675775 GCTGTTGCAAGTTTTGGAAGACA 60.676 43.478 0.00 0.00 41.75 3.41
4082 12190 3.843999 TGTTGCAAGTTTTGGAAGACAC 58.156 40.909 0.00 0.00 41.75 3.67
4083 12191 3.256879 TGTTGCAAGTTTTGGAAGACACA 59.743 39.130 0.00 0.00 41.75 3.72
4084 12192 4.241681 GTTGCAAGTTTTGGAAGACACAA 58.758 39.130 0.00 0.00 41.75 3.33
4085 12193 4.108699 TGCAAGTTTTGGAAGACACAAG 57.891 40.909 0.00 0.00 0.00 3.16
4086 12194 3.761218 TGCAAGTTTTGGAAGACACAAGA 59.239 39.130 0.00 0.00 0.00 3.02
4087 12195 4.402155 TGCAAGTTTTGGAAGACACAAGAT 59.598 37.500 0.00 0.00 0.00 2.40
4088 12196 5.592282 TGCAAGTTTTGGAAGACACAAGATA 59.408 36.000 0.00 0.00 0.00 1.98
4089 12197 5.915196 GCAAGTTTTGGAAGACACAAGATAC 59.085 40.000 0.00 0.00 0.00 2.24
4090 12198 6.459573 GCAAGTTTTGGAAGACACAAGATACA 60.460 38.462 0.00 0.00 0.00 2.29
4091 12199 7.651808 CAAGTTTTGGAAGACACAAGATACAT 58.348 34.615 0.00 0.00 0.00 2.29
4092 12200 8.783093 CAAGTTTTGGAAGACACAAGATACATA 58.217 33.333 0.00 0.00 0.00 2.29
4093 12201 8.918202 AGTTTTGGAAGACACAAGATACATAA 57.082 30.769 0.00 0.00 0.00 1.90
4094 12202 9.349713 AGTTTTGGAAGACACAAGATACATAAA 57.650 29.630 0.00 0.00 0.00 1.40
4098 12206 8.862325 TGGAAGACACAAGATACATAAATTGT 57.138 30.769 0.00 0.00 42.62 2.71
4099 12207 9.295825 TGGAAGACACAAGATACATAAATTGTT 57.704 29.630 0.00 0.00 39.87 2.83
4100 12208 9.559958 GGAAGACACAAGATACATAAATTGTTG 57.440 33.333 0.00 0.00 39.87 3.33
4101 12209 9.559958 GAAGACACAAGATACATAAATTGTTGG 57.440 33.333 0.00 0.00 39.87 3.77
4102 12210 8.635765 AGACACAAGATACATAAATTGTTGGT 57.364 30.769 0.00 0.00 39.87 3.67
4103 12211 8.514594 AGACACAAGATACATAAATTGTTGGTG 58.485 33.333 0.00 0.00 39.87 4.17
4104 12212 7.090173 ACACAAGATACATAAATTGTTGGTGC 58.910 34.615 0.00 0.00 39.87 5.01
4105 12213 7.039784 ACACAAGATACATAAATTGTTGGTGCT 60.040 33.333 0.00 0.00 39.87 4.40
4106 12214 8.458052 CACAAGATACATAAATTGTTGGTGCTA 58.542 33.333 0.00 0.00 39.87 3.49
4107 12215 9.019656 ACAAGATACATAAATTGTTGGTGCTAA 57.980 29.630 0.00 0.00 39.87 3.09
4108 12216 9.853555 CAAGATACATAAATTGTTGGTGCTAAA 57.146 29.630 0.00 0.00 39.87 1.85
4110 12218 8.190784 AGATACATAAATTGTTGGTGCTAAAGC 58.809 33.333 0.00 0.00 39.87 3.51
4111 12219 6.345096 ACATAAATTGTTGGTGCTAAAGCT 57.655 33.333 3.26 0.00 37.30 3.74
4112 12220 7.461182 ACATAAATTGTTGGTGCTAAAGCTA 57.539 32.000 3.26 0.00 37.30 3.32
4113 12221 7.891561 ACATAAATTGTTGGTGCTAAAGCTAA 58.108 30.769 3.26 0.00 37.30 3.09
4114 12222 8.364142 ACATAAATTGTTGGTGCTAAAGCTAAA 58.636 29.630 3.26 0.00 37.30 1.85
4115 12223 8.647226 CATAAATTGTTGGTGCTAAAGCTAAAC 58.353 33.333 3.26 5.92 42.66 2.01
4116 12224 5.782893 ATTGTTGGTGCTAAAGCTAAACA 57.217 34.783 3.26 8.20 42.66 2.83
4117 12225 5.782893 TTGTTGGTGCTAAAGCTAAACAT 57.217 34.783 14.15 0.00 42.66 2.71
4118 12226 5.119931 TGTTGGTGCTAAAGCTAAACATG 57.880 39.130 3.26 0.00 42.66 3.21
4119 12227 3.848272 TGGTGCTAAAGCTAAACATGC 57.152 42.857 3.26 0.00 42.66 4.06
4120 12228 3.153130 TGGTGCTAAAGCTAAACATGCA 58.847 40.909 3.26 0.00 42.66 3.96
4121 12229 3.763360 TGGTGCTAAAGCTAAACATGCAT 59.237 39.130 3.26 0.00 42.66 3.96
4122 12230 4.946772 TGGTGCTAAAGCTAAACATGCATA 59.053 37.500 0.00 0.00 42.66 3.14
4123 12231 5.593909 TGGTGCTAAAGCTAAACATGCATAT 59.406 36.000 0.00 0.00 42.66 1.78
4124 12232 6.145535 GGTGCTAAAGCTAAACATGCATATC 58.854 40.000 0.00 0.00 42.66 1.63
4125 12233 6.016777 GGTGCTAAAGCTAAACATGCATATCT 60.017 38.462 0.00 0.00 42.66 1.98
4126 12234 7.173218 GGTGCTAAAGCTAAACATGCATATCTA 59.827 37.037 0.00 0.00 42.66 1.98
4127 12235 8.226448 GTGCTAAAGCTAAACATGCATATCTAG 58.774 37.037 0.00 1.34 42.66 2.43
4128 12236 7.095060 TGCTAAAGCTAAACATGCATATCTAGC 60.095 37.037 18.57 18.57 42.66 3.42
4129 12237 7.118971 GCTAAAGCTAAACATGCATATCTAGCT 59.881 37.037 21.31 21.31 42.90 3.32
4130 12238 6.798315 AAGCTAAACATGCATATCTAGCTG 57.202 37.500 24.92 7.14 40.82 4.24
4131 12239 4.694509 AGCTAAACATGCATATCTAGCTGC 59.305 41.667 24.16 12.25 40.33 5.25
4132 12240 4.694509 GCTAAACATGCATATCTAGCTGCT 59.305 41.667 18.79 7.57 39.16 4.24
4133 12241 5.390673 GCTAAACATGCATATCTAGCTGCTG 60.391 44.000 13.43 2.51 39.16 4.41
4134 12242 4.347360 AACATGCATATCTAGCTGCTGA 57.653 40.909 13.43 8.28 39.16 4.26
4135 12243 4.347360 ACATGCATATCTAGCTGCTGAA 57.653 40.909 13.43 0.00 39.16 3.02
4136 12244 4.907809 ACATGCATATCTAGCTGCTGAAT 58.092 39.130 13.43 8.05 39.16 2.57
4137 12245 4.936411 ACATGCATATCTAGCTGCTGAATC 59.064 41.667 13.43 0.00 39.16 2.52
4138 12246 4.612264 TGCATATCTAGCTGCTGAATCA 57.388 40.909 13.43 0.00 39.16 2.57
4139 12247 5.161943 TGCATATCTAGCTGCTGAATCAT 57.838 39.130 13.43 0.00 39.16 2.45
4140 12248 4.935808 TGCATATCTAGCTGCTGAATCATG 59.064 41.667 13.43 9.99 39.16 3.07
4141 12249 4.201832 GCATATCTAGCTGCTGAATCATGC 60.202 45.833 13.43 15.43 35.49 4.06
4142 12250 2.994186 TCTAGCTGCTGAATCATGCA 57.006 45.000 13.43 7.06 37.63 3.96
4143 12251 3.487120 TCTAGCTGCTGAATCATGCAT 57.513 42.857 13.43 0.00 38.59 3.96
4144 12252 3.139077 TCTAGCTGCTGAATCATGCATG 58.861 45.455 21.07 21.07 38.59 4.06
4145 12253 0.385751 AGCTGCTGAATCATGCATGC 59.614 50.000 22.25 11.82 38.59 4.06
4146 12254 0.102300 GCTGCTGAATCATGCATGCA 59.898 50.000 25.04 25.04 38.59 3.96
4147 12255 1.840181 CTGCTGAATCATGCATGCAC 58.160 50.000 25.37 10.66 38.59 4.57
4148 12256 0.099791 TGCTGAATCATGCATGCACG 59.900 50.000 25.37 16.65 33.94 5.34
4149 12257 0.379316 GCTGAATCATGCATGCACGA 59.621 50.000 25.37 22.52 0.00 4.35
4150 12258 1.858798 GCTGAATCATGCATGCACGAC 60.859 52.381 25.37 10.13 0.00 4.34
4151 12259 1.399089 CTGAATCATGCATGCACGACA 59.601 47.619 25.37 14.54 0.00 4.35
4152 12260 1.130938 TGAATCATGCATGCACGACAC 59.869 47.619 25.37 17.63 0.00 3.67
4153 12261 0.452987 AATCATGCATGCACGACACC 59.547 50.000 25.37 0.00 0.00 4.16
4154 12262 0.677414 ATCATGCATGCACGACACCA 60.677 50.000 25.37 0.00 0.00 4.17
4155 12263 0.888285 TCATGCATGCACGACACCAA 60.888 50.000 25.37 0.00 0.00 3.67
4156 12264 0.730155 CATGCATGCACGACACCAAC 60.730 55.000 25.37 0.00 0.00 3.77
4157 12265 1.171549 ATGCATGCACGACACCAACA 61.172 50.000 25.37 0.00 0.00 3.33
4158 12266 1.081906 GCATGCACGACACCAACAG 60.082 57.895 14.21 0.00 0.00 3.16
4159 12267 1.506309 GCATGCACGACACCAACAGA 61.506 55.000 14.21 0.00 0.00 3.41
4160 12268 0.235665 CATGCACGACACCAACAGAC 59.764 55.000 0.00 0.00 0.00 3.51
4161 12269 1.221466 ATGCACGACACCAACAGACG 61.221 55.000 0.00 0.00 0.00 4.18
4162 12270 2.594962 GCACGACACCAACAGACGG 61.595 63.158 0.00 0.00 0.00 4.79
4163 12271 1.066752 CACGACACCAACAGACGGA 59.933 57.895 0.00 0.00 0.00 4.69
4164 12272 0.319555 CACGACACCAACAGACGGAT 60.320 55.000 0.00 0.00 0.00 4.18
4165 12273 0.391597 ACGACACCAACAGACGGATT 59.608 50.000 0.00 0.00 0.00 3.01
4166 12274 0.790207 CGACACCAACAGACGGATTG 59.210 55.000 0.00 0.00 0.00 2.67
4169 12277 3.177600 CCAACAGACGGATTGGCG 58.822 61.111 0.00 0.00 39.07 5.69
4170 12278 2.480555 CAACAGACGGATTGGCGC 59.519 61.111 0.00 0.00 0.00 6.53
4171 12279 2.031919 AACAGACGGATTGGCGCA 59.968 55.556 10.83 0.00 0.00 6.09
4172 12280 2.325082 AACAGACGGATTGGCGCAC 61.325 57.895 10.83 0.00 0.00 5.34
4173 12281 3.499737 CAGACGGATTGGCGCACC 61.500 66.667 10.83 5.89 0.00 5.01
4174 12282 4.778143 AGACGGATTGGCGCACCC 62.778 66.667 10.83 2.88 33.59 4.61
4175 12283 4.778143 GACGGATTGGCGCACCCT 62.778 66.667 10.83 0.00 33.59 4.34
4176 12284 4.778143 ACGGATTGGCGCACCCTC 62.778 66.667 10.83 0.00 33.59 4.30
4177 12285 4.776322 CGGATTGGCGCACCCTCA 62.776 66.667 10.83 0.00 33.59 3.86
4178 12286 2.361104 GGATTGGCGCACCCTCAA 60.361 61.111 10.83 3.74 33.59 3.02
4179 12287 2.700773 GGATTGGCGCACCCTCAAC 61.701 63.158 10.83 0.00 33.59 3.18
4180 12288 1.971167 GATTGGCGCACCCTCAACA 60.971 57.895 10.83 0.00 33.59 3.33
4181 12289 2.200170 GATTGGCGCACCCTCAACAC 62.200 60.000 10.83 0.00 33.59 3.32
4182 12290 2.697147 ATTGGCGCACCCTCAACACT 62.697 55.000 10.83 0.00 33.59 3.55
4183 12291 3.357079 GGCGCACCCTCAACACTG 61.357 66.667 10.83 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
419 776 2.949447 AGCAAAAGGATCAACACCAGT 58.051 42.857 0.00 0.00 0.00 4.00
440 797 7.205297 CCTAATCTTCGTATTTCCGTCCTTTA 58.795 38.462 0.00 0.00 0.00 1.85
574 961 8.997621 AGCGTTATATAAGAAACTTGAGTTGA 57.002 30.769 0.00 0.00 38.44 3.18
656 1072 2.360165 GGTAGATCCGCTTTAGTTCCGA 59.640 50.000 0.00 0.00 0.00 4.55
657 1073 2.361438 AGGTAGATCCGCTTTAGTTCCG 59.639 50.000 0.00 0.00 41.99 4.30
1298 3728 6.525629 ACAGATCTTGGGGTAATAATCTTCG 58.474 40.000 0.00 0.00 0.00 3.79
1306 3736 7.734865 TGATAGTGATACAGATCTTGGGGTAAT 59.265 37.037 0.00 0.00 32.79 1.89
1308 3738 6.620429 TGATAGTGATACAGATCTTGGGGTA 58.380 40.000 0.00 0.00 32.79 3.69
1344 3774 5.287226 ACCGATGGTTCAATACGAATAGTC 58.713 41.667 0.00 0.00 35.63 2.59
1348 3778 3.120792 CGACCGATGGTTCAATACGAAT 58.879 45.455 0.00 0.00 35.25 3.34
1361 3791 2.582498 GGACCGCTTCGACCGATG 60.582 66.667 6.26 0.00 0.00 3.84
1382 3812 7.079048 ACCTTCCAATTCATCTAGTAGATCCT 58.921 38.462 9.84 0.00 31.32 3.24
1437 3871 3.706389 TGTATCCCCTTCAGAGATGGA 57.294 47.619 0.91 0.00 0.00 3.41
1532 3973 6.830324 TCTGAATCATGGATTAACCCTTCAAG 59.170 38.462 0.00 0.00 38.00 3.02
1538 3979 7.607991 ACGAATATCTGAATCATGGATTAACCC 59.392 37.037 0.00 0.00 38.00 4.11
1752 6231 8.956426 GGATAACTCAGTTGAATATTCACCAAA 58.044 33.333 17.76 0.38 36.83 3.28
1798 6277 1.689258 GCCCCAAAGGTGCTCCATAAT 60.689 52.381 7.70 0.00 38.26 1.28
1850 6333 6.127925 TGGCTAAGATTACACAAGCAATTGAG 60.128 38.462 10.34 0.27 34.85 3.02
2131 6644 6.209589 TCAGATCACTTCTAAGTAACAGCACT 59.790 38.462 0.00 0.00 37.08 4.40
2148 6661 6.443934 TCTGCTAGTAGAAACTCAGATCAC 57.556 41.667 8.22 0.00 33.75 3.06
2186 6699 7.278724 TCTTTGTTAGGATCCTCCCAAATTA 57.721 36.000 26.71 19.30 37.19 1.40
2314 6835 3.892588 AGGACAGTTAGATAGTGCTAGGC 59.107 47.826 0.00 0.00 31.95 3.93
2315 6836 6.999272 TCTAAGGACAGTTAGATAGTGCTAGG 59.001 42.308 0.00 0.00 34.69 3.02
2434 7027 1.180029 ACATCACCCATTGCAAGCTC 58.820 50.000 4.94 0.00 0.00 4.09
2549 7156 0.544833 ATTTGCAGGGAATGGTGGCA 60.545 50.000 0.00 0.00 0.00 4.92
3243 10449 8.729805 ATTGCAAAACCTGAAAATTAGTTTGA 57.270 26.923 1.71 0.00 32.97 2.69
3321 10541 5.288232 CGACAAAACAAAACTTGCATGAAGA 59.712 36.000 6.60 0.00 35.42 2.87
3387 10617 6.349777 CCACACAACGGTATGGTAAATTTCAT 60.350 38.462 0.00 0.00 36.81 2.57
3436 11179 1.024271 GCAAGCAAACAGGTCACTCA 58.976 50.000 0.00 0.00 0.00 3.41
3479 11222 4.380761 CCCGCAACATGATCTGAAATTTCA 60.381 41.667 19.45 19.45 35.57 2.69
3578 11324 1.078759 GACGTGCTCGACCTGAATGG 61.079 60.000 16.04 0.00 40.62 3.16
3716 11492 2.352686 GCACACAAGCACGCACAG 60.353 61.111 0.00 0.00 0.00 3.66
3762 11538 4.074970 GCTCTTTTTGGAAGGACTCATCA 58.925 43.478 0.00 0.00 0.00 3.07
3792 11568 0.884704 ACTGATGCCAACACCACGAC 60.885 55.000 0.00 0.00 0.00 4.34
3921 12027 3.760035 TCGTCTTGCTCTCCGGCC 61.760 66.667 0.00 0.00 0.00 6.13
3943 12049 1.002087 AGGAAGTTTCTAGCACCACGG 59.998 52.381 0.00 0.00 0.00 4.94
3944 12050 2.457366 AGGAAGTTTCTAGCACCACG 57.543 50.000 0.00 0.00 0.00 4.94
3945 12051 3.597255 GGTAGGAAGTTTCTAGCACCAC 58.403 50.000 14.38 0.00 35.84 4.16
3946 12052 2.570302 GGGTAGGAAGTTTCTAGCACCA 59.430 50.000 19.62 0.00 37.06 4.17
3947 12053 2.093075 GGGGTAGGAAGTTTCTAGCACC 60.093 54.545 19.62 14.62 37.06 5.01
3948 12054 2.093075 GGGGGTAGGAAGTTTCTAGCAC 60.093 54.545 19.62 16.71 37.75 4.40
3949 12055 2.193993 GGGGGTAGGAAGTTTCTAGCA 58.806 52.381 19.62 0.00 37.06 3.49
4014 12122 0.798776 CATTTCACACTCGGCCAGTC 59.201 55.000 2.24 0.00 30.26 3.51
4022 12130 8.454106 ACATACAAAAGCTATCATTTCACACTC 58.546 33.333 0.00 0.00 0.00 3.51
4023 12131 8.340618 ACATACAAAAGCTATCATTTCACACT 57.659 30.769 0.00 0.00 0.00 3.55
4024 12132 9.490663 GTACATACAAAAGCTATCATTTCACAC 57.509 33.333 0.00 0.00 0.00 3.82
4025 12133 9.225436 TGTACATACAAAAGCTATCATTTCACA 57.775 29.630 0.00 0.00 32.40 3.58
4026 12134 9.708222 CTGTACATACAAAAGCTATCATTTCAC 57.292 33.333 0.00 0.00 35.50 3.18
4027 12135 9.665719 TCTGTACATACAAAAGCTATCATTTCA 57.334 29.630 0.00 0.00 35.50 2.69
4029 12137 9.113838 CCTCTGTACATACAAAAGCTATCATTT 57.886 33.333 0.00 0.00 35.50 2.32
4032 12140 6.049149 GCCTCTGTACATACAAAAGCTATCA 58.951 40.000 0.00 0.00 35.50 2.15
4033 12141 6.284459 AGCCTCTGTACATACAAAAGCTATC 58.716 40.000 0.00 0.00 34.74 2.08
4034 12142 6.240549 AGCCTCTGTACATACAAAAGCTAT 57.759 37.500 0.00 0.00 34.74 2.97
4035 12143 5.677319 AGCCTCTGTACATACAAAAGCTA 57.323 39.130 0.00 0.00 34.74 3.32
4036 12144 4.559862 AGCCTCTGTACATACAAAAGCT 57.440 40.909 0.00 0.00 35.50 3.74
4037 12145 4.271291 GCTAGCCTCTGTACATACAAAAGC 59.729 45.833 2.29 0.00 35.50 3.51
4038 12146 5.521735 CAGCTAGCCTCTGTACATACAAAAG 59.478 44.000 12.13 0.00 35.50 2.27
4039 12147 5.046591 ACAGCTAGCCTCTGTACATACAAAA 60.047 40.000 12.13 0.00 42.45 2.44
4040 12148 4.466370 ACAGCTAGCCTCTGTACATACAAA 59.534 41.667 12.13 0.00 42.45 2.83
4041 12149 4.023980 ACAGCTAGCCTCTGTACATACAA 58.976 43.478 12.13 0.00 42.45 2.41
4042 12150 3.632333 ACAGCTAGCCTCTGTACATACA 58.368 45.455 12.13 0.00 42.45 2.29
4043 12151 4.363999 CAACAGCTAGCCTCTGTACATAC 58.636 47.826 12.13 0.00 43.36 2.39
4044 12152 3.181475 GCAACAGCTAGCCTCTGTACATA 60.181 47.826 12.13 0.00 43.36 2.29
4045 12153 2.419297 GCAACAGCTAGCCTCTGTACAT 60.419 50.000 12.13 0.00 43.36 2.29
4046 12154 1.066858 GCAACAGCTAGCCTCTGTACA 60.067 52.381 12.13 0.00 43.36 2.90
4047 12155 1.066858 TGCAACAGCTAGCCTCTGTAC 60.067 52.381 12.13 6.37 43.36 2.90
4048 12156 1.266178 TGCAACAGCTAGCCTCTGTA 58.734 50.000 12.13 2.57 43.36 2.74
4049 12157 0.397941 TTGCAACAGCTAGCCTCTGT 59.602 50.000 12.13 6.70 45.83 3.41
4050 12158 1.085091 CTTGCAACAGCTAGCCTCTG 58.915 55.000 12.13 5.96 37.56 3.35
4051 12159 0.689623 ACTTGCAACAGCTAGCCTCT 59.310 50.000 12.13 0.00 35.03 3.69
4052 12160 1.528129 AACTTGCAACAGCTAGCCTC 58.472 50.000 12.13 0.00 35.03 4.70
4053 12161 1.986882 AAACTTGCAACAGCTAGCCT 58.013 45.000 12.13 0.00 35.03 4.58
4054 12162 2.397549 CAAAACTTGCAACAGCTAGCC 58.602 47.619 12.13 0.00 35.03 3.93
4055 12163 2.034558 TCCAAAACTTGCAACAGCTAGC 59.965 45.455 6.62 6.62 35.03 3.42
4056 12164 3.988379 TCCAAAACTTGCAACAGCTAG 57.012 42.857 0.00 0.00 37.19 3.42
4057 12165 3.951037 TCTTCCAAAACTTGCAACAGCTA 59.049 39.130 0.00 0.00 0.00 3.32
4058 12166 2.760092 TCTTCCAAAACTTGCAACAGCT 59.240 40.909 0.00 0.00 0.00 4.24
4059 12167 2.860136 GTCTTCCAAAACTTGCAACAGC 59.140 45.455 0.00 0.00 0.00 4.40
4060 12168 3.859386 GTGTCTTCCAAAACTTGCAACAG 59.141 43.478 0.00 0.00 0.00 3.16
4061 12169 3.256879 TGTGTCTTCCAAAACTTGCAACA 59.743 39.130 0.00 0.00 0.00 3.33
4062 12170 3.843999 TGTGTCTTCCAAAACTTGCAAC 58.156 40.909 0.00 0.00 0.00 4.17
4063 12171 4.219507 TCTTGTGTCTTCCAAAACTTGCAA 59.780 37.500 0.00 0.00 0.00 4.08
4064 12172 3.761218 TCTTGTGTCTTCCAAAACTTGCA 59.239 39.130 0.00 0.00 0.00 4.08
4065 12173 4.370364 TCTTGTGTCTTCCAAAACTTGC 57.630 40.909 0.00 0.00 0.00 4.01
4066 12174 7.026631 TGTATCTTGTGTCTTCCAAAACTTG 57.973 36.000 0.00 0.00 0.00 3.16
4067 12175 7.823745 ATGTATCTTGTGTCTTCCAAAACTT 57.176 32.000 0.00 0.00 0.00 2.66
4068 12176 8.918202 TTATGTATCTTGTGTCTTCCAAAACT 57.082 30.769 0.00 0.00 0.00 2.66
4072 12180 9.295825 ACAATTTATGTATCTTGTGTCTTCCAA 57.704 29.630 0.00 0.00 41.63 3.53
4073 12181 8.862325 ACAATTTATGTATCTTGTGTCTTCCA 57.138 30.769 0.00 0.00 41.63 3.53
4074 12182 9.559958 CAACAATTTATGTATCTTGTGTCTTCC 57.440 33.333 0.00 0.00 42.99 3.46
4075 12183 9.559958 CCAACAATTTATGTATCTTGTGTCTTC 57.440 33.333 0.00 0.00 42.99 2.87
4076 12184 9.077885 ACCAACAATTTATGTATCTTGTGTCTT 57.922 29.630 0.00 0.00 42.99 3.01
4077 12185 8.514594 CACCAACAATTTATGTATCTTGTGTCT 58.485 33.333 0.00 0.00 42.99 3.41
4078 12186 7.273381 GCACCAACAATTTATGTATCTTGTGTC 59.727 37.037 0.00 0.00 42.99 3.67
4079 12187 7.039784 AGCACCAACAATTTATGTATCTTGTGT 60.040 33.333 0.00 0.00 42.99 3.72
4080 12188 7.315142 AGCACCAACAATTTATGTATCTTGTG 58.685 34.615 0.00 0.00 42.99 3.33
4081 12189 7.466746 AGCACCAACAATTTATGTATCTTGT 57.533 32.000 0.00 0.00 42.99 3.16
4082 12190 9.853555 TTTAGCACCAACAATTTATGTATCTTG 57.146 29.630 0.00 0.00 42.99 3.02
4084 12192 8.190784 GCTTTAGCACCAACAATTTATGTATCT 58.809 33.333 0.00 0.00 40.54 1.98
4085 12193 8.190784 AGCTTTAGCACCAACAATTTATGTATC 58.809 33.333 4.33 0.00 42.38 2.24
4086 12194 8.066612 AGCTTTAGCACCAACAATTTATGTAT 57.933 30.769 4.33 0.00 42.38 2.29
4087 12195 7.461182 AGCTTTAGCACCAACAATTTATGTA 57.539 32.000 4.33 0.00 42.38 2.29
4088 12196 6.345096 AGCTTTAGCACCAACAATTTATGT 57.655 33.333 4.33 0.00 44.14 2.29
4089 12197 8.647226 GTTTAGCTTTAGCACCAACAATTTATG 58.353 33.333 4.33 0.00 45.16 1.90
4090 12198 8.364142 TGTTTAGCTTTAGCACCAACAATTTAT 58.636 29.630 4.33 0.00 45.16 1.40
4091 12199 7.717568 TGTTTAGCTTTAGCACCAACAATTTA 58.282 30.769 4.33 0.00 45.16 1.40
4092 12200 6.578023 TGTTTAGCTTTAGCACCAACAATTT 58.422 32.000 4.33 0.00 45.16 1.82
4093 12201 6.155475 TGTTTAGCTTTAGCACCAACAATT 57.845 33.333 4.33 0.00 45.16 2.32
4094 12202 5.782893 TGTTTAGCTTTAGCACCAACAAT 57.217 34.783 4.33 0.00 45.16 2.71
4095 12203 5.527951 CATGTTTAGCTTTAGCACCAACAA 58.472 37.500 13.73 3.30 45.16 2.83
4096 12204 4.558496 GCATGTTTAGCTTTAGCACCAACA 60.558 41.667 12.70 12.70 45.16 3.33
4097 12205 3.920412 GCATGTTTAGCTTTAGCACCAAC 59.080 43.478 4.33 4.50 45.16 3.77
4098 12206 3.571828 TGCATGTTTAGCTTTAGCACCAA 59.428 39.130 4.33 0.00 45.16 3.67
4099 12207 3.153130 TGCATGTTTAGCTTTAGCACCA 58.847 40.909 4.33 0.00 45.16 4.17
4100 12208 3.848272 TGCATGTTTAGCTTTAGCACC 57.152 42.857 4.33 0.00 45.16 5.01
4101 12209 6.963796 AGATATGCATGTTTAGCTTTAGCAC 58.036 36.000 10.16 0.00 45.16 4.40
4102 12210 7.095060 GCTAGATATGCATGTTTAGCTTTAGCA 60.095 37.037 27.99 0.00 45.16 3.49
4103 12211 7.118971 AGCTAGATATGCATGTTTAGCTTTAGC 59.881 37.037 30.65 16.81 40.49 3.09
4104 12212 8.441608 CAGCTAGATATGCATGTTTAGCTTTAG 58.558 37.037 32.53 22.72 41.19 1.85
4105 12213 7.095060 GCAGCTAGATATGCATGTTTAGCTTTA 60.095 37.037 32.53 3.62 41.19 1.85
4106 12214 6.293845 GCAGCTAGATATGCATGTTTAGCTTT 60.294 38.462 32.53 18.69 41.19 3.51
4107 12215 5.180868 GCAGCTAGATATGCATGTTTAGCTT 59.819 40.000 32.53 20.93 41.19 3.74
4108 12216 4.694509 GCAGCTAGATATGCATGTTTAGCT 59.305 41.667 30.65 30.65 43.19 3.32
4109 12217 4.694509 AGCAGCTAGATATGCATGTTTAGC 59.305 41.667 28.03 28.03 45.01 3.09
4110 12218 5.930569 TCAGCAGCTAGATATGCATGTTTAG 59.069 40.000 10.16 12.79 45.01 1.85
4111 12219 5.857268 TCAGCAGCTAGATATGCATGTTTA 58.143 37.500 10.16 1.02 45.01 2.01
4112 12220 4.711399 TCAGCAGCTAGATATGCATGTTT 58.289 39.130 10.16 0.00 45.01 2.83
4113 12221 4.347360 TCAGCAGCTAGATATGCATGTT 57.653 40.909 10.16 0.00 45.01 2.71
4114 12222 4.347360 TTCAGCAGCTAGATATGCATGT 57.653 40.909 10.16 1.23 45.01 3.21
4115 12223 4.935808 TGATTCAGCAGCTAGATATGCATG 59.064 41.667 10.16 10.75 45.01 4.06
4116 12224 5.161943 TGATTCAGCAGCTAGATATGCAT 57.838 39.130 3.79 3.79 45.01 3.96
4117 12225 4.612264 TGATTCAGCAGCTAGATATGCA 57.388 40.909 14.87 0.00 45.01 3.96
4118 12226 4.201832 GCATGATTCAGCAGCTAGATATGC 60.202 45.833 12.30 12.30 42.87 3.14
4119 12227 4.935808 TGCATGATTCAGCAGCTAGATATG 59.064 41.667 0.00 0.00 35.51 1.78
4120 12228 5.161943 TGCATGATTCAGCAGCTAGATAT 57.838 39.130 0.00 0.00 35.51 1.63
4121 12229 4.612264 TGCATGATTCAGCAGCTAGATA 57.388 40.909 0.00 0.00 35.51 1.98
4122 12230 3.487120 TGCATGATTCAGCAGCTAGAT 57.513 42.857 0.00 0.00 35.51 1.98
4123 12231 2.994186 TGCATGATTCAGCAGCTAGA 57.006 45.000 0.00 0.00 35.51 2.43
4124 12232 2.350868 GCATGCATGATTCAGCAGCTAG 60.351 50.000 30.64 0.00 44.94 3.42
4125 12233 1.607148 GCATGCATGATTCAGCAGCTA 59.393 47.619 30.64 0.00 44.94 3.32
4126 12234 0.385751 GCATGCATGATTCAGCAGCT 59.614 50.000 30.64 0.00 44.94 4.24
4127 12235 0.102300 TGCATGCATGATTCAGCAGC 59.898 50.000 30.64 11.74 44.94 5.25
4128 12236 1.840181 GTGCATGCATGATTCAGCAG 58.160 50.000 30.64 0.20 44.94 4.24
4129 12237 0.099791 CGTGCATGCATGATTCAGCA 59.900 50.000 31.95 16.63 45.92 4.41
4130 12238 0.379316 TCGTGCATGCATGATTCAGC 59.621 50.000 33.51 14.03 37.08 4.26
4131 12239 1.399089 TGTCGTGCATGCATGATTCAG 59.601 47.619 37.65 17.54 42.92 3.02
4132 12240 1.130938 GTGTCGTGCATGCATGATTCA 59.869 47.619 37.65 29.70 42.92 2.57
4133 12241 1.532505 GGTGTCGTGCATGCATGATTC 60.533 52.381 37.65 30.69 42.92 2.52
4134 12242 0.452987 GGTGTCGTGCATGCATGATT 59.547 50.000 37.65 0.00 42.92 2.57
4135 12243 0.677414 TGGTGTCGTGCATGCATGAT 60.677 50.000 37.65 0.00 42.92 2.45
4136 12244 0.888285 TTGGTGTCGTGCATGCATGA 60.888 50.000 33.51 33.51 39.38 3.07
4137 12245 0.730155 GTTGGTGTCGTGCATGCATG 60.730 55.000 30.20 30.20 0.00 4.06
4138 12246 1.171549 TGTTGGTGTCGTGCATGCAT 61.172 50.000 25.64 0.00 0.00 3.96
4139 12247 1.784036 CTGTTGGTGTCGTGCATGCA 61.784 55.000 18.46 18.46 0.00 3.96
4140 12248 1.081906 CTGTTGGTGTCGTGCATGC 60.082 57.895 11.82 11.82 0.00 4.06
4141 12249 0.235665 GTCTGTTGGTGTCGTGCATG 59.764 55.000 0.00 0.00 0.00 4.06
4142 12250 1.221466 CGTCTGTTGGTGTCGTGCAT 61.221 55.000 0.00 0.00 0.00 3.96
4143 12251 1.880796 CGTCTGTTGGTGTCGTGCA 60.881 57.895 0.00 0.00 0.00 4.57
4144 12252 2.594962 CCGTCTGTTGGTGTCGTGC 61.595 63.158 0.00 0.00 0.00 5.34
4145 12253 0.319555 ATCCGTCTGTTGGTGTCGTG 60.320 55.000 0.00 0.00 0.00 4.35
4146 12254 0.391597 AATCCGTCTGTTGGTGTCGT 59.608 50.000 0.00 0.00 0.00 4.34
4147 12255 0.790207 CAATCCGTCTGTTGGTGTCG 59.210 55.000 0.00 0.00 0.00 4.35
4148 12256 1.156736 CCAATCCGTCTGTTGGTGTC 58.843 55.000 0.00 0.00 39.97 3.67
4149 12257 0.889186 GCCAATCCGTCTGTTGGTGT 60.889 55.000 6.07 0.00 45.25 4.16
4150 12258 1.875963 GCCAATCCGTCTGTTGGTG 59.124 57.895 6.07 0.00 45.25 4.17
4151 12259 1.671054 CGCCAATCCGTCTGTTGGT 60.671 57.895 6.07 0.00 45.25 3.67
4152 12260 3.039202 GCGCCAATCCGTCTGTTGG 62.039 63.158 0.00 0.00 46.03 3.77
4153 12261 2.324330 TGCGCCAATCCGTCTGTTG 61.324 57.895 4.18 0.00 0.00 3.33
4154 12262 2.031919 TGCGCCAATCCGTCTGTT 59.968 55.556 4.18 0.00 0.00 3.16
4155 12263 2.742372 GTGCGCCAATCCGTCTGT 60.742 61.111 4.18 0.00 0.00 3.41
4156 12264 3.499737 GGTGCGCCAATCCGTCTG 61.500 66.667 12.58 0.00 34.09 3.51
4157 12265 4.778143 GGGTGCGCCAATCCGTCT 62.778 66.667 19.98 0.00 36.17 4.18
4158 12266 4.778143 AGGGTGCGCCAATCCGTC 62.778 66.667 19.98 0.00 36.17 4.79
4159 12267 4.778143 GAGGGTGCGCCAATCCGT 62.778 66.667 19.98 3.84 36.17 4.69
4160 12268 4.776322 TGAGGGTGCGCCAATCCG 62.776 66.667 19.98 0.00 36.17 4.18
4161 12269 2.361104 TTGAGGGTGCGCCAATCC 60.361 61.111 19.98 0.00 36.17 3.01
4162 12270 1.971167 TGTTGAGGGTGCGCCAATC 60.971 57.895 19.98 15.72 36.17 2.67
4163 12271 2.115052 TGTTGAGGGTGCGCCAAT 59.885 55.556 19.98 5.68 36.17 3.16
4164 12272 2.904866 GTGTTGAGGGTGCGCCAA 60.905 61.111 19.98 0.18 36.17 4.52
4165 12273 3.872603 AGTGTTGAGGGTGCGCCA 61.873 61.111 19.98 0.00 36.17 5.69
4166 12274 3.357079 CAGTGTTGAGGGTGCGCC 61.357 66.667 8.12 8.12 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.