Multiple sequence alignment - TraesCS7D01G461900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G461900 chr7D 100.000 3975 0 0 1 3975 577842398 577846372 0.000000e+00 7341.0
1 TraesCS7D01G461900 chr7D 100.000 1906 0 0 4333 6238 577846730 577848635 0.000000e+00 3520.0
2 TraesCS7D01G461900 chr7D 93.590 78 3 2 5387 5463 6744962 6744886 1.420000e-21 115.0
3 TraesCS7D01G461900 chr7A 91.286 1859 77 31 2167 3971 670005949 670007776 0.000000e+00 2457.0
4 TraesCS7D01G461900 chr7A 92.568 1184 56 12 1000 2168 670004421 670005587 0.000000e+00 1670.0
5 TraesCS7D01G461900 chr7A 87.069 928 84 14 5329 6238 670009135 670010044 0.000000e+00 1016.0
6 TraesCS7D01G461900 chr7A 93.182 528 36 0 4681 5208 670008407 670008934 0.000000e+00 776.0
7 TraesCS7D01G461900 chr7A 93.909 394 17 5 606 997 670003986 670004374 6.970000e-164 588.0
8 TraesCS7D01G461900 chr7A 93.235 340 20 2 4333 4672 670007817 670008153 1.210000e-136 497.0
9 TraesCS7D01G461900 chr7A 88.591 298 27 5 226 517 669924372 669924668 7.690000e-94 355.0
10 TraesCS7D01G461900 chr7A 85.870 184 18 4 51 226 246853788 246853971 8.260000e-44 189.0
11 TraesCS7D01G461900 chr7A 89.773 88 7 1 526 613 669925713 669925798 1.840000e-20 111.0
12 TraesCS7D01G461900 chr7B 89.568 1946 97 29 1463 3361 641256037 641257923 0.000000e+00 2372.0
13 TraesCS7D01G461900 chr7B 88.821 1789 162 15 4478 6238 641325253 641327031 0.000000e+00 2161.0
14 TraesCS7D01G461900 chr7B 92.814 1155 70 11 4338 5490 641258607 641259750 0.000000e+00 1661.0
15 TraesCS7D01G461900 chr7B 93.604 813 26 10 639 1441 641255023 641255819 0.000000e+00 1190.0
16 TraesCS7D01G461900 chr7B 91.003 778 41 12 3189 3948 641328447 641329213 0.000000e+00 1022.0
17 TraesCS7D01G461900 chr7B 89.987 759 67 7 5483 6238 641282043 641282795 0.000000e+00 972.0
18 TraesCS7D01G461900 chr7B 92.661 654 44 4 4838 5490 641329813 641330463 0.000000e+00 939.0
19 TraesCS7D01G461900 chr7B 89.211 760 71 8 5483 6238 641331119 641331871 0.000000e+00 939.0
20 TraesCS7D01G461900 chr7B 86.949 613 57 12 4336 4937 641329215 641329815 0.000000e+00 667.0
21 TraesCS7D01G461900 chr7B 88.417 518 38 9 2696 3204 641327644 641328148 6.920000e-169 604.0
22 TraesCS7D01G461900 chr7B 88.439 519 29 9 3473 3971 641258078 641258585 1.160000e-166 597.0
23 TraesCS7D01G461900 chr7B 90.090 222 15 3 4 218 572174558 572174779 1.320000e-71 281.0
24 TraesCS7D01G461900 chr7B 91.765 170 12 2 5430 5598 641318049 641318217 1.050000e-57 235.0
25 TraesCS7D01G461900 chr7B 81.295 139 18 5 2526 2659 641327502 641327637 8.550000e-19 106.0
26 TraesCS7D01G461900 chr1D 89.238 223 17 3 3 218 290476882 290477104 7.970000e-69 272.0
27 TraesCS7D01G461900 chr1D 80.519 154 16 9 477 626 139136161 139136304 8.550000e-19 106.0
28 TraesCS7D01G461900 chr1D 79.874 159 17 10 477 630 44172165 44172017 1.110000e-17 102.0
29 TraesCS7D01G461900 chr3A 88.839 224 18 2 3 219 76212877 76212654 1.030000e-67 268.0
30 TraesCS7D01G461900 chr3A 100.000 28 0 0 2968 2995 657229208 657229235 1.100000e-02 52.8
31 TraesCS7D01G461900 chr3D 88.789 223 18 4 3 218 244129278 244129500 3.710000e-67 267.0
32 TraesCS7D01G461900 chr3D 90.000 80 8 0 5 84 207202101 207202180 3.080000e-18 104.0
33 TraesCS7D01G461900 chr3D 93.750 64 2 2 5401 5463 550996777 550996839 1.850000e-15 95.3
34 TraesCS7D01G461900 chr1A 88.688 221 18 3 4 217 527793393 527793173 4.800000e-66 263.0
35 TraesCS7D01G461900 chr1A 80.435 184 33 3 239 420 514217860 514217678 3.030000e-28 137.0
36 TraesCS7D01G461900 chr2D 82.206 281 39 8 1162 1441 121706146 121705876 1.350000e-56 231.0
37 TraesCS7D01G461900 chr2D 82.418 182 30 2 239 419 248779891 248779711 2.330000e-34 158.0
38 TraesCS7D01G461900 chr2D 95.000 80 4 0 3 82 473149658 473149737 6.560000e-25 126.0
39 TraesCS7D01G461900 chr2D 100.000 28 0 0 4737 4764 601708720 601708693 1.100000e-02 52.8
40 TraesCS7D01G461900 chr2D 100.000 28 0 0 4737 4764 601963477 601963450 1.100000e-02 52.8
41 TraesCS7D01G461900 chr2D 100.000 28 0 0 4737 4764 602774632 602774659 1.100000e-02 52.8
42 TraesCS7D01G461900 chr2B 93.706 143 8 1 85 227 152429945 152430086 4.900000e-51 213.0
43 TraesCS7D01G461900 chr2B 90.196 153 13 2 85 237 152451529 152451679 1.370000e-46 198.0
44 TraesCS7D01G461900 chr2B 87.647 170 17 4 51 218 499969508 499969675 1.770000e-45 195.0
45 TraesCS7D01G461900 chr2B 90.476 84 8 0 1 84 152429823 152429906 1.840000e-20 111.0
46 TraesCS7D01G461900 chr5D 95.455 132 6 0 86 217 360231439 360231570 1.760000e-50 211.0
47 TraesCS7D01G461900 chr5D 100.000 29 0 0 376 404 487178051 487178023 3.000000e-03 54.7
48 TraesCS7D01G461900 chr2A 87.079 178 19 4 51 224 168707179 168707002 1.370000e-46 198.0
49 TraesCS7D01G461900 chr2A 86.585 82 11 0 3 84 427177709 427177790 2.390000e-14 91.6
50 TraesCS7D01G461900 chr2A 100.000 28 0 0 4737 4764 735397865 735397892 1.100000e-02 52.8
51 TraesCS7D01G461900 chr4A 86.486 185 18 2 4 181 510231786 510231970 4.930000e-46 196.0
52 TraesCS7D01G461900 chr1B 81.761 159 18 9 477 630 401460188 401460340 8.490000e-24 122.0
53 TraesCS7D01G461900 chr1B 91.026 78 3 4 5387 5463 662552776 662552702 1.110000e-17 102.0
54 TraesCS7D01G461900 chr1B 90.000 70 5 2 5395 5463 29409010 29408942 8.610000e-14 89.8
55 TraesCS7D01G461900 chr6D 80.503 159 16 10 477 630 102930385 102930237 2.380000e-19 108.0
56 TraesCS7D01G461900 chr6D 78.431 153 21 7 477 626 102859890 102859747 8.610000e-14 89.8
57 TraesCS7D01G461900 chr4D 80.503 159 16 10 477 630 22517456 22517308 2.380000e-19 108.0
58 TraesCS7D01G461900 chr4D 80.645 155 16 11 477 627 488027944 488028088 2.380000e-19 108.0
59 TraesCS7D01G461900 chr5A 89.873 79 7 1 4 82 152001663 152001586 3.980000e-17 100.0
60 TraesCS7D01G461900 chr6A 88.095 84 8 2 5387 5469 107509477 107509395 1.430000e-16 99.0
61 TraesCS7D01G461900 chr6A 90.000 70 5 2 5387 5455 42918801 42918869 8.610000e-14 89.8
62 TraesCS7D01G461900 chrUn 100.000 28 0 0 4737 4764 379978524 379978551 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G461900 chr7D 577842398 577848635 6237 False 5430.500000 7341 100.000000 1 6238 2 chr7D.!!$F1 6237
1 TraesCS7D01G461900 chr7A 670003986 670010044 6058 False 1167.333333 2457 91.874833 606 6238 6 chr7A.!!$F3 5632
2 TraesCS7D01G461900 chr7A 669924372 669925798 1426 False 233.000000 355 89.182000 226 613 2 chr7A.!!$F2 387
3 TraesCS7D01G461900 chr7B 641255023 641259750 4727 False 1455.000000 2372 91.106250 639 5490 4 chr7B.!!$F4 4851
4 TraesCS7D01G461900 chr7B 641282043 641282795 752 False 972.000000 972 89.987000 5483 6238 1 chr7B.!!$F2 755
5 TraesCS7D01G461900 chr7B 641325253 641331871 6618 False 919.714286 2161 88.336714 2526 6238 7 chr7B.!!$F5 3712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.034670 AGCTGATGGCAAAGACCCTC 60.035 55.000 4.85 0.00 44.79 4.30 F
165 166 0.034670 AGACCCTCTTTGCCATCAGC 60.035 55.000 0.00 0.00 44.14 4.26 F
262 263 0.093026 GCGACCACGTTCTCAAATCG 59.907 55.000 0.00 0.00 41.98 3.34 F
1445 2542 0.249489 GAGTGGCTGGTGCGTATAGG 60.249 60.000 0.00 0.00 40.82 2.57 F
2118 3471 1.406898 TGCTCCACGCACAATTTTTGA 59.593 42.857 0.00 0.00 45.47 2.69 F
2121 3474 1.680735 TCCACGCACAATTTTTGAGCT 59.319 42.857 7.79 0.00 43.70 4.09 F
3077 4832 1.408340 AGATCGAGTGCATGGACTCTG 59.592 52.381 35.13 28.73 40.33 3.35 F
3553 5718 0.313672 TTGGCTTCACGCAAATGACC 59.686 50.000 0.00 0.00 41.67 4.02 F
5046 7602 0.462375 CGTGGATGATGTTCCCGGTA 59.538 55.000 0.00 0.00 34.67 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2118 3471 0.235665 CGTCGTGCACAAATCAAGCT 59.764 50.000 18.64 0.00 0.00 3.74 R
2126 3479 1.003331 GGATTTTCACGTCGTGCACAA 60.003 47.619 20.56 12.40 32.98 3.33 R
2226 3942 8.915057 ATTAGTTAATGAGAAGTGCTATGCAT 57.085 30.769 3.79 3.79 41.91 3.96 R
2383 4106 0.506080 CAAGCGATAGATGCTGACGC 59.494 55.000 0.00 0.00 43.14 5.19 R
3065 4815 1.185315 TCGTGATCAGAGTCCATGCA 58.815 50.000 0.00 0.00 0.00 3.96 R
3219 5288 1.376424 CCACTGCGATGTTCAGCCT 60.376 57.895 0.00 0.00 35.04 4.58 R
4508 6721 0.037232 ACTTCGCCTTGTAGTCCTGC 60.037 55.000 0.00 0.00 0.00 4.85 R
5048 7604 0.253044 AAGCTACATGCATCACCGGT 59.747 50.000 0.00 0.00 45.94 5.28 R
6031 9353 1.227556 CCGAAATACGCCAGGGAGG 60.228 63.158 0.00 0.00 41.07 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.949106 CAGCAAAGACAGTGGCCG 59.051 61.111 0.00 0.00 0.00 6.13
19 20 1.152963 AGCAAAGACAGTGGCCGTT 60.153 52.632 0.00 0.00 0.00 4.44
21 22 0.517316 GCAAAGACAGTGGCCGTTAG 59.483 55.000 0.00 0.00 0.00 2.34
24 25 0.320771 AAGACAGTGGCCGTTAGCTG 60.321 55.000 0.00 3.92 43.05 4.24
25 26 2.358737 ACAGTGGCCGTTAGCTGC 60.359 61.111 0.00 0.00 43.05 5.25
26 27 3.127533 CAGTGGCCGTTAGCTGCC 61.128 66.667 5.02 5.02 44.06 4.85
29 30 3.003173 TGGCCGTTAGCTGCCTCT 61.003 61.111 12.95 0.00 44.12 3.69
30 31 2.202946 GGCCGTTAGCTGCCTCTC 60.203 66.667 4.73 0.00 41.12 3.20
31 32 2.583593 GCCGTTAGCTGCCTCTCG 60.584 66.667 0.00 0.00 38.99 4.04
32 33 2.583593 CCGTTAGCTGCCTCTCGC 60.584 66.667 0.00 0.00 38.31 5.03
33 34 2.492090 CGTTAGCTGCCTCTCGCT 59.508 61.111 0.00 0.00 40.15 4.93
34 35 1.725557 CCGTTAGCTGCCTCTCGCTA 61.726 60.000 0.00 0.00 37.68 4.26
36 37 0.596341 GTTAGCTGCCTCTCGCTAGC 60.596 60.000 4.06 4.06 39.62 3.42
37 38 2.064723 TTAGCTGCCTCTCGCTAGCG 62.065 60.000 30.91 30.91 42.73 4.26
38 39 4.940593 GCTGCCTCTCGCTAGCGG 62.941 72.222 34.76 24.91 40.25 5.52
43 44 4.577246 CTCTCGCTAGCGGCCCAC 62.577 72.222 34.76 0.00 40.25 4.61
48 49 4.237207 GCTAGCGGCCCACCCTAC 62.237 72.222 0.00 0.00 34.27 3.18
49 50 3.547513 CTAGCGGCCCACCCTACC 61.548 72.222 0.00 0.00 0.00 3.18
50 51 4.084147 TAGCGGCCCACCCTACCT 62.084 66.667 0.00 0.00 0.00 3.08
54 55 2.298661 CGGCCCACCCTACCTCTTT 61.299 63.158 0.00 0.00 0.00 2.52
55 56 1.303282 GGCCCACCCTACCTCTTTG 59.697 63.158 0.00 0.00 0.00 2.77
57 58 1.303282 CCCACCCTACCTCTTTGCC 59.697 63.158 0.00 0.00 0.00 4.52
58 59 1.078426 CCACCCTACCTCTTTGCCG 60.078 63.158 0.00 0.00 0.00 5.69
60 61 0.391263 CACCCTACCTCTTTGCCGTC 60.391 60.000 0.00 0.00 0.00 4.79
61 62 0.834687 ACCCTACCTCTTTGCCGTCA 60.835 55.000 0.00 0.00 0.00 4.35
63 64 0.741221 CCTACCTCTTTGCCGTCAGC 60.741 60.000 0.00 0.00 44.14 4.26
64 65 0.247736 CTACCTCTTTGCCGTCAGCT 59.752 55.000 0.00 0.00 44.23 4.24
65 66 0.685097 TACCTCTTTGCCGTCAGCTT 59.315 50.000 0.00 0.00 44.23 3.74
66 67 0.886490 ACCTCTTTGCCGTCAGCTTG 60.886 55.000 0.00 0.00 44.23 4.01
67 68 1.208614 CTCTTTGCCGTCAGCTTGC 59.791 57.895 0.00 0.00 44.23 4.01
76 77 1.954146 GTCAGCTTGCGGACGACAA 60.954 57.895 9.78 0.00 0.00 3.18
77 78 1.227409 TCAGCTTGCGGACGACAAA 60.227 52.632 0.00 0.00 0.00 2.83
79 80 1.961277 AGCTTGCGGACGACAAAGG 60.961 57.895 0.00 0.00 0.00 3.11
80 81 2.251642 GCTTGCGGACGACAAAGGT 61.252 57.895 0.00 0.00 0.00 3.50
81 82 1.782028 GCTTGCGGACGACAAAGGTT 61.782 55.000 0.00 0.00 0.00 3.50
82 83 0.234884 CTTGCGGACGACAAAGGTTC 59.765 55.000 0.00 0.00 0.00 3.62
83 84 0.179067 TTGCGGACGACAAAGGTTCT 60.179 50.000 0.00 0.00 0.00 3.01
84 85 0.878523 TGCGGACGACAAAGGTTCTG 60.879 55.000 0.00 0.00 0.00 3.02
85 86 1.860078 CGGACGACAAAGGTTCTGC 59.140 57.895 0.00 0.00 0.00 4.26
86 87 0.878523 CGGACGACAAAGGTTCTGCA 60.879 55.000 0.00 0.00 0.00 4.41
87 88 1.305201 GGACGACAAAGGTTCTGCAA 58.695 50.000 0.00 0.00 0.00 4.08
88 89 1.673920 GGACGACAAAGGTTCTGCAAA 59.326 47.619 0.00 0.00 0.00 3.68
89 90 2.540973 GGACGACAAAGGTTCTGCAAAC 60.541 50.000 0.00 0.00 0.00 2.93
91 92 2.490115 ACGACAAAGGTTCTGCAAACAA 59.510 40.909 11.93 0.00 0.00 2.83
92 93 3.130340 ACGACAAAGGTTCTGCAAACAAT 59.870 39.130 11.93 0.72 0.00 2.71
93 94 4.111916 CGACAAAGGTTCTGCAAACAATT 58.888 39.130 11.93 5.43 0.00 2.32
94 95 4.566360 CGACAAAGGTTCTGCAAACAATTT 59.434 37.500 11.93 9.55 0.00 1.82
95 96 5.276348 CGACAAAGGTTCTGCAAACAATTTC 60.276 40.000 11.93 3.54 0.00 2.17
96 97 5.733676 ACAAAGGTTCTGCAAACAATTTCT 58.266 33.333 11.93 0.37 0.00 2.52
97 98 6.172630 ACAAAGGTTCTGCAAACAATTTCTT 58.827 32.000 11.93 5.03 0.00 2.52
98 99 6.654582 ACAAAGGTTCTGCAAACAATTTCTTT 59.345 30.769 11.93 9.12 0.00 2.52
99 100 6.667007 AAGGTTCTGCAAACAATTTCTTTG 57.333 33.333 11.93 2.22 41.36 2.77
109 110 4.214980 ACAATTTCTTTGTCGTCAGCTG 57.785 40.909 7.63 7.63 45.55 4.24
110 111 2.975851 CAATTTCTTTGTCGTCAGCTGC 59.024 45.455 9.47 3.23 0.00 5.25
111 112 1.953559 TTTCTTTGTCGTCAGCTGCT 58.046 45.000 9.47 0.00 0.00 4.24
113 114 1.502231 TCTTTGTCGTCAGCTGCTTC 58.498 50.000 9.47 0.96 0.00 3.86
115 116 1.869767 CTTTGTCGTCAGCTGCTTCTT 59.130 47.619 9.47 0.00 0.00 2.52
117 118 1.220529 TGTCGTCAGCTGCTTCTTTG 58.779 50.000 9.47 0.00 0.00 2.77
118 119 0.110464 GTCGTCAGCTGCTTCTTTGC 60.110 55.000 9.47 0.00 0.00 3.68
119 120 1.208614 CGTCAGCTGCTTCTTTGCC 59.791 57.895 9.47 0.00 0.00 4.52
120 121 1.509644 CGTCAGCTGCTTCTTTGCCA 61.510 55.000 9.47 0.00 0.00 4.92
121 122 0.886563 GTCAGCTGCTTCTTTGCCAT 59.113 50.000 9.47 0.00 0.00 4.40
122 123 1.135460 GTCAGCTGCTTCTTTGCCATC 60.135 52.381 9.47 0.00 0.00 3.51
124 125 1.135373 CAGCTGCTTCTTTGCCATCAG 60.135 52.381 0.00 0.00 0.00 2.90
125 126 0.886563 GCTGCTTCTTTGCCATCAGT 59.113 50.000 0.00 0.00 0.00 3.41
126 127 1.271656 GCTGCTTCTTTGCCATCAGTT 59.728 47.619 0.00 0.00 0.00 3.16
127 128 2.288640 GCTGCTTCTTTGCCATCAGTTT 60.289 45.455 0.00 0.00 0.00 2.66
128 129 3.801293 GCTGCTTCTTTGCCATCAGTTTT 60.801 43.478 0.00 0.00 0.00 2.43
129 130 3.981211 TGCTTCTTTGCCATCAGTTTTC 58.019 40.909 0.00 0.00 0.00 2.29
130 131 3.638160 TGCTTCTTTGCCATCAGTTTTCT 59.362 39.130 0.00 0.00 0.00 2.52
131 132 4.099881 TGCTTCTTTGCCATCAGTTTTCTT 59.900 37.500 0.00 0.00 0.00 2.52
133 134 5.737063 GCTTCTTTGCCATCAGTTTTCTTCA 60.737 40.000 0.00 0.00 0.00 3.02
135 136 5.835257 TCTTTGCCATCAGTTTTCTTCAAG 58.165 37.500 0.00 0.00 0.00 3.02
136 137 3.648339 TGCCATCAGTTTTCTTCAAGC 57.352 42.857 0.00 0.00 0.00 4.01
137 138 3.225104 TGCCATCAGTTTTCTTCAAGCT 58.775 40.909 0.00 0.00 0.00 3.74
138 139 3.005050 TGCCATCAGTTTTCTTCAAGCTG 59.995 43.478 0.00 0.00 43.40 4.24
145 146 3.638160 AGTTTTCTTCAAGCTGATGGCAA 59.362 39.130 0.00 0.00 44.79 4.52
148 149 3.144657 TCTTCAAGCTGATGGCAAAGA 57.855 42.857 4.85 0.00 44.79 2.52
149 150 2.816087 TCTTCAAGCTGATGGCAAAGAC 59.184 45.455 4.85 0.00 44.79 3.01
151 152 0.529378 CAAGCTGATGGCAAAGACCC 59.471 55.000 4.85 0.00 44.79 4.46
153 154 0.034670 AGCTGATGGCAAAGACCCTC 60.035 55.000 4.85 0.00 44.79 4.30
154 155 0.034670 GCTGATGGCAAAGACCCTCT 60.035 55.000 4.85 0.00 41.35 3.69
156 157 2.800250 CTGATGGCAAAGACCCTCTTT 58.200 47.619 0.00 0.00 46.75 2.52
164 165 2.503895 AAGACCCTCTTTGCCATCAG 57.496 50.000 0.00 0.00 31.57 2.90
165 166 0.034670 AGACCCTCTTTGCCATCAGC 60.035 55.000 0.00 0.00 44.14 4.26
166 167 0.034670 GACCCTCTTTGCCATCAGCT 60.035 55.000 0.00 0.00 44.23 4.24
167 168 1.210478 GACCCTCTTTGCCATCAGCTA 59.790 52.381 0.00 0.00 44.23 3.32
168 169 1.211457 ACCCTCTTTGCCATCAGCTAG 59.789 52.381 0.00 0.00 44.23 3.42
169 170 1.307097 CCTCTTTGCCATCAGCTAGC 58.693 55.000 6.62 6.62 44.23 3.42
170 171 1.134159 CCTCTTTGCCATCAGCTAGCT 60.134 52.381 12.68 12.68 44.23 3.32
171 172 1.941294 CTCTTTGCCATCAGCTAGCTG 59.059 52.381 34.48 34.48 44.23 4.24
178 179 3.376546 TCAGCTAGCTGACGGCAA 58.623 55.556 37.64 19.05 46.80 4.52
179 180 1.671166 TCAGCTAGCTGACGGCAAA 59.329 52.632 37.64 18.34 46.80 3.68
180 181 0.390340 TCAGCTAGCTGACGGCAAAG 60.390 55.000 37.64 14.25 46.80 2.77
181 182 0.390340 CAGCTAGCTGACGGCAAAGA 60.390 55.000 36.47 0.00 46.30 2.52
182 183 0.321671 AGCTAGCTGACGGCAAAGAA 59.678 50.000 18.57 0.00 44.79 2.52
183 184 0.444260 GCTAGCTGACGGCAAAGAAC 59.556 55.000 7.70 0.00 44.79 3.01
191 192 3.758172 GGCAAAGAACCGGCTGAA 58.242 55.556 0.00 0.00 0.00 3.02
193 194 1.581447 GCAAAGAACCGGCTGAAGG 59.419 57.895 0.00 0.00 0.00 3.46
194 195 1.581447 CAAAGAACCGGCTGAAGGC 59.419 57.895 0.00 0.00 40.90 4.35
195 196 1.150536 AAAGAACCGGCTGAAGGCA 59.849 52.632 0.00 0.00 44.01 4.75
196 197 0.467290 AAAGAACCGGCTGAAGGCAA 60.467 50.000 0.00 0.00 44.01 4.52
197 198 0.467290 AAGAACCGGCTGAAGGCAAA 60.467 50.000 0.00 0.00 44.01 3.68
200 201 0.755327 AACCGGCTGAAGGCAAAGTT 60.755 50.000 0.00 2.01 44.01 2.66
201 202 1.172812 ACCGGCTGAAGGCAAAGTTC 61.173 55.000 0.00 0.00 44.01 3.01
202 203 1.581447 CGGCTGAAGGCAAAGTTCC 59.419 57.895 4.64 0.00 44.01 3.62
205 206 1.609208 GCTGAAGGCAAAGTTCCTGA 58.391 50.000 0.00 0.00 41.35 3.86
206 207 2.165998 GCTGAAGGCAAAGTTCCTGAT 58.834 47.619 0.00 0.00 41.35 2.90
208 209 3.366781 GCTGAAGGCAAAGTTCCTGATTC 60.367 47.826 0.00 0.00 41.35 2.52
209 210 3.157087 TGAAGGCAAAGTTCCTGATTCC 58.843 45.455 0.00 0.00 33.43 3.01
210 211 2.978156 AGGCAAAGTTCCTGATTCCA 57.022 45.000 0.00 0.00 31.53 3.53
211 212 3.243359 AGGCAAAGTTCCTGATTCCAA 57.757 42.857 0.00 0.00 31.53 3.53
212 213 3.782992 AGGCAAAGTTCCTGATTCCAAT 58.217 40.909 0.00 0.00 31.53 3.16
213 214 4.934356 AGGCAAAGTTCCTGATTCCAATA 58.066 39.130 0.00 0.00 31.53 1.90
215 216 4.706962 GGCAAAGTTCCTGATTCCAATAGT 59.293 41.667 0.00 0.00 0.00 2.12
216 217 5.393461 GGCAAAGTTCCTGATTCCAATAGTG 60.393 44.000 0.00 0.00 0.00 2.74
217 218 5.183904 GCAAAGTTCCTGATTCCAATAGTGT 59.816 40.000 0.00 0.00 0.00 3.55
218 219 6.374333 GCAAAGTTCCTGATTCCAATAGTGTA 59.626 38.462 0.00 0.00 0.00 2.90
219 220 7.094377 GCAAAGTTCCTGATTCCAATAGTGTAA 60.094 37.037 0.00 0.00 0.00 2.41
220 221 8.454106 CAAAGTTCCTGATTCCAATAGTGTAAG 58.546 37.037 0.00 0.00 0.00 2.34
221 222 6.116126 AGTTCCTGATTCCAATAGTGTAAGC 58.884 40.000 0.00 0.00 0.00 3.09
222 223 5.692115 TCCTGATTCCAATAGTGTAAGCA 57.308 39.130 0.00 0.00 0.00 3.91
223 224 6.252599 TCCTGATTCCAATAGTGTAAGCAT 57.747 37.500 0.00 0.00 0.00 3.79
256 257 2.050714 TGTCGCGACCACGTTCTC 60.051 61.111 34.34 8.73 41.98 2.87
260 261 0.319211 TCGCGACCACGTTCTCAAAT 60.319 50.000 3.71 0.00 41.98 2.32
262 263 0.093026 GCGACCACGTTCTCAAATCG 59.907 55.000 0.00 0.00 41.98 3.34
263 264 1.693467 CGACCACGTTCTCAAATCGA 58.307 50.000 0.00 0.00 34.56 3.59
264 265 1.385743 CGACCACGTTCTCAAATCGAC 59.614 52.381 0.00 0.00 34.56 4.20
303 306 8.557029 CAAACTTACCGGATAAGGAAACATATC 58.443 37.037 9.46 0.00 44.17 1.63
306 309 7.713942 ACTTACCGGATAAGGAAACATATCAAC 59.286 37.037 9.46 0.00 44.17 3.18
309 312 6.542370 ACCGGATAAGGAAACATATCAACTTG 59.458 38.462 9.46 0.00 41.62 3.16
312 315 7.516785 CGGATAAGGAAACATATCAACTTGTCG 60.517 40.741 0.00 0.00 41.62 4.35
337 340 7.039270 GGTCAAGACACCAAAAAGTAAAACAT 58.961 34.615 2.29 0.00 36.32 2.71
348 351 8.122330 CCAAAAAGTAAAACATCAAAAGGAAGC 58.878 33.333 0.00 0.00 0.00 3.86
353 356 1.514873 CATCAAAAGGAAGCCGCGC 60.515 57.895 0.00 0.00 0.00 6.86
355 358 3.365265 CAAAAGGAAGCCGCGCCT 61.365 61.111 0.00 0.00 35.61 5.52
358 361 4.767255 AAGGAAGCCGCGCCTCTG 62.767 66.667 0.00 0.00 32.07 3.35
375 378 1.695242 TCTGTAAGGCAAGGAACCGAA 59.305 47.619 0.00 0.00 0.00 4.30
463 470 1.202313 ACGCGCATAGTCTCCTCTTTC 60.202 52.381 5.73 0.00 0.00 2.62
474 481 5.293560 AGTCTCCTCTTTCTTTTCTCAACG 58.706 41.667 0.00 0.00 0.00 4.10
517 524 3.835395 AGGTCCAACTCTTCCTCAACTAG 59.165 47.826 0.00 0.00 0.00 2.57
520 527 2.237392 CCAACTCTTCCTCAACTAGGGG 59.763 54.545 0.00 0.00 46.55 4.79
523 530 1.208293 CTCTTCCTCAACTAGGGGCAC 59.792 57.143 0.00 0.00 46.55 5.01
589 1632 1.203288 TGGGCCACTTTGGGATTTCAT 60.203 47.619 0.00 0.00 38.19 2.57
622 1665 4.865905 TGAGCCAAGCCCATTTATTTCTA 58.134 39.130 0.00 0.00 0.00 2.10
661 1704 8.986477 AACATTTATTTCTAACAATCACCAGC 57.014 30.769 0.00 0.00 0.00 4.85
762 1805 7.832503 AGAGTCGAAGTAGTACTAGAAGAAC 57.167 40.000 1.87 0.11 0.00 3.01
788 1831 0.391597 ATGTATTCGGCGGTAGGTGG 59.608 55.000 7.21 0.00 0.00 4.61
856 1901 3.779759 CTCTTCATCTTCCTCCTCGTTG 58.220 50.000 0.00 0.00 0.00 4.10
926 1977 0.681733 ATCCCATCTTCCGATCCACG 59.318 55.000 0.00 0.00 42.18 4.94
955 2006 2.416747 TCAAGCTCACAATCAAGTCGG 58.583 47.619 0.00 0.00 0.00 4.79
1344 2441 3.419759 GTGTACAAGGGCGCCGTG 61.420 66.667 24.39 23.67 38.88 4.94
1442 2539 1.553690 AAGGAGTGGCTGGTGCGTAT 61.554 55.000 0.00 0.00 40.82 3.06
1443 2540 0.686441 AGGAGTGGCTGGTGCGTATA 60.686 55.000 0.00 0.00 40.82 1.47
1445 2542 0.249489 GAGTGGCTGGTGCGTATAGG 60.249 60.000 0.00 0.00 40.82 2.57
1529 2823 3.887110 TGCATGGATGGATTTGACTGATC 59.113 43.478 0.00 0.00 0.00 2.92
1534 2831 3.432186 GGATGGATTTGACTGATCGGTGA 60.432 47.826 13.13 0.00 0.00 4.02
1537 2834 3.197549 TGGATTTGACTGATCGGTGATGA 59.802 43.478 13.13 0.00 0.00 2.92
1541 2838 3.893326 TGACTGATCGGTGATGATTGT 57.107 42.857 13.13 0.00 0.00 2.71
1547 2844 3.119531 TGATCGGTGATGATTGTTTTGGC 60.120 43.478 0.00 0.00 0.00 4.52
1614 2911 2.671351 CGTGAAGCTCATCGGTTACTGT 60.671 50.000 0.00 0.00 32.54 3.55
1820 3140 8.609176 TCATGGTATTTCGTTAGTTGCTAATTC 58.391 33.333 0.00 0.00 0.00 2.17
1821 3141 7.908827 TGGTATTTCGTTAGTTGCTAATTCA 57.091 32.000 0.00 0.00 0.00 2.57
1822 3142 8.500753 TGGTATTTCGTTAGTTGCTAATTCAT 57.499 30.769 0.00 0.00 0.00 2.57
1823 3143 8.952278 TGGTATTTCGTTAGTTGCTAATTCATT 58.048 29.630 0.00 0.00 0.00 2.57
2110 3463 2.243957 CGAAACTGCTCCACGCACA 61.244 57.895 0.00 0.00 45.47 4.57
2118 3471 1.406898 TGCTCCACGCACAATTTTTGA 59.593 42.857 0.00 0.00 45.47 2.69
2121 3474 1.680735 TCCACGCACAATTTTTGAGCT 59.319 42.857 7.79 0.00 43.70 4.09
2122 3475 2.100584 TCCACGCACAATTTTTGAGCTT 59.899 40.909 7.79 0.00 43.70 3.74
2126 3479 4.209703 CACGCACAATTTTTGAGCTTGATT 59.790 37.500 9.43 0.00 44.85 2.57
2226 3942 9.738832 CTGTGAATCATGCAAAAATATGTCATA 57.261 29.630 0.00 0.00 0.00 2.15
2383 4106 4.506654 GCCATATTATATTACCAGCGTCGG 59.493 45.833 0.00 0.00 0.00 4.79
2445 4168 7.142680 GCTGACTACTACTCCATGAATTCTAC 58.857 42.308 7.05 0.00 0.00 2.59
2446 4169 7.584122 TGACTACTACTCCATGAATTCTACC 57.416 40.000 7.05 0.00 0.00 3.18
2447 4170 6.550108 TGACTACTACTCCATGAATTCTACCC 59.450 42.308 7.05 0.00 0.00 3.69
2462 4185 9.201989 TGAATTCTACCCCTGTAGCTATATATG 57.798 37.037 7.05 0.00 43.51 1.78
2650 4380 1.841663 CTGTTGACTTCGTTGGCCCG 61.842 60.000 0.00 0.00 0.00 6.13
2708 4443 2.746277 ACGGGCGTGCATTTCCTC 60.746 61.111 0.00 0.00 0.00 3.71
2893 4632 8.995220 ACTTAAAGAAAAACCTCAACAAAAACC 58.005 29.630 0.00 0.00 0.00 3.27
2921 4662 4.579753 TCTGATCAAACTTGCACATCACAA 59.420 37.500 0.00 0.00 0.00 3.33
3070 4820 7.338440 TCGATAAATAAAGATCGAGTGCATG 57.662 36.000 3.02 0.00 46.63 4.06
3077 4832 1.408340 AGATCGAGTGCATGGACTCTG 59.592 52.381 35.13 28.73 40.33 3.35
3082 4837 2.548875 GAGTGCATGGACTCTGATCAC 58.451 52.381 32.92 11.50 39.52 3.06
3219 5288 0.528901 CGTTCTGTCGTGGTCAACCA 60.529 55.000 0.00 0.00 45.30 3.67
3553 5718 0.313672 TTGGCTTCACGCAAATGACC 59.686 50.000 0.00 0.00 41.67 4.02
3565 5730 2.918131 GCAAATGACCAGCTCGTCAAAC 60.918 50.000 18.29 4.69 45.49 2.93
3637 5802 9.920826 GTGAACACACATATATACTGACAAATG 57.079 33.333 0.00 0.00 34.98 2.32
3638 5803 9.665719 TGAACACACATATATACTGACAAATGT 57.334 29.630 0.00 0.00 0.00 2.71
3655 5820 4.317671 AATGTGTGGGCGAGTAGTATAC 57.682 45.455 0.00 0.00 43.47 1.47
3663 5835 4.023792 TGGGCGAGTAGTATACACATTACG 60.024 45.833 5.50 4.56 46.26 3.18
3737 5932 4.211164 TGCATACGACTTTTCAACTCACTG 59.789 41.667 0.00 0.00 0.00 3.66
3796 5992 5.403466 CCTTGTATTTGTCAAAGCTTGCTTC 59.597 40.000 8.39 0.00 0.00 3.86
3813 6009 6.536582 GCTTGCTTCTCTGATTAAGACATGTA 59.463 38.462 0.00 0.00 0.00 2.29
3814 6010 7.065085 GCTTGCTTCTCTGATTAAGACATGTAA 59.935 37.037 0.00 0.00 0.00 2.41
3815 6011 7.834068 TGCTTCTCTGATTAAGACATGTAAC 57.166 36.000 0.00 0.00 0.00 2.50
3816 6012 7.615403 TGCTTCTCTGATTAAGACATGTAACT 58.385 34.615 0.00 0.00 0.00 2.24
3817 6013 8.749354 TGCTTCTCTGATTAAGACATGTAACTA 58.251 33.333 0.00 0.00 0.00 2.24
3818 6014 9.026074 GCTTCTCTGATTAAGACATGTAACTAC 57.974 37.037 0.00 0.00 0.00 2.73
3873 6076 7.413877 GCAGACTCTCTTCTTTACAAATGGATG 60.414 40.741 0.00 0.00 0.00 3.51
4404 6617 1.636988 CGCCTGTTTAGAACCCGTAG 58.363 55.000 0.00 0.00 0.00 3.51
4413 6626 2.865343 AGAACCCGTAGCGTCATAAG 57.135 50.000 0.00 0.00 0.00 1.73
4417 6630 1.209128 CCCGTAGCGTCATAAGCAAG 58.791 55.000 0.00 0.00 37.01 4.01
4430 6643 5.703130 GTCATAAGCAAGAACTTTCCAGAGT 59.297 40.000 0.00 0.00 0.00 3.24
4470 6683 6.247229 TCATTAGTGCATGGTAGGTACATT 57.753 37.500 0.00 0.00 0.00 2.71
4471 6684 6.658849 TCATTAGTGCATGGTAGGTACATTT 58.341 36.000 0.00 0.00 0.00 2.32
4506 6719 4.340666 TGCTAAAATGGCTGAACTTTGTCA 59.659 37.500 0.00 0.00 0.00 3.58
4508 6721 5.346822 GCTAAAATGGCTGAACTTTGTCATG 59.653 40.000 0.00 0.00 0.00 3.07
4547 6760 4.088634 AGTTATCTGATTTTGGCCTTGCA 58.911 39.130 3.32 0.00 0.00 4.08
4672 6885 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
4677 6890 2.170397 TCTCTCTCTCTCTCTCGTGCAT 59.830 50.000 0.00 0.00 0.00 3.96
4678 6891 2.287769 TCTCTCTCTCTCTCGTGCATG 58.712 52.381 0.00 0.00 0.00 4.06
4679 6892 0.737804 TCTCTCTCTCTCGTGCATGC 59.262 55.000 11.82 11.82 0.00 4.06
4772 7230 3.181469 ACAGCTTTGGTGTCGTTCTTCTA 60.181 43.478 0.00 0.00 40.38 2.10
4775 7233 4.056050 GCTTTGGTGTCGTTCTTCTAGAA 58.944 43.478 4.81 4.81 0.00 2.10
4808 7266 2.143594 GACGAGCCGTGGACAAGACT 62.144 60.000 4.94 0.00 41.37 3.24
4811 7269 1.174783 GAGCCGTGGACAAGACTAGA 58.825 55.000 0.00 0.00 0.00 2.43
4918 7474 1.774856 GGAGGGTAAGTATGCCACCAT 59.225 52.381 4.86 0.00 33.78 3.55
4938 7494 1.153005 GCAGCTCATAAGGCAGCCT 60.153 57.895 8.70 8.70 36.45 4.58
5004 7560 1.069513 ACATGTCGAAGGTCGTGGAAA 59.930 47.619 0.00 0.00 41.35 3.13
5046 7602 0.462375 CGTGGATGATGTTCCCGGTA 59.538 55.000 0.00 0.00 34.67 4.02
5048 7604 2.678479 CGTGGATGATGTTCCCGGTAAA 60.678 50.000 0.00 0.00 34.67 2.01
5092 7648 5.997746 CACAAGATGACACTAGGAAGGAAAA 59.002 40.000 0.00 0.00 0.00 2.29
5114 7670 5.948742 AAACAACAAGAAGAAATGGGGAA 57.051 34.783 0.00 0.00 0.00 3.97
5129 7685 2.858768 TGGGGAAAGGGAGAGCAATAAT 59.141 45.455 0.00 0.00 0.00 1.28
5141 7697 0.106918 GCAATAATGGGGGTCACCGA 60.107 55.000 0.00 0.00 41.60 4.69
5239 7795 5.029807 CCTGGAGAAGGGAAAATCTAGTC 57.970 47.826 0.00 0.00 43.15 2.59
5308 7864 4.566545 TGGTTGCACACTAGTTTTGATG 57.433 40.909 5.56 0.00 0.00 3.07
5309 7865 3.951037 TGGTTGCACACTAGTTTTGATGT 59.049 39.130 5.56 0.00 0.00 3.06
5312 7868 3.814625 TGCACACTAGTTTTGATGTGGA 58.185 40.909 10.01 5.31 42.20 4.02
5315 7871 3.753272 CACACTAGTTTTGATGTGGAGGG 59.247 47.826 0.00 0.00 39.01 4.30
5385 8023 2.234414 TGGCCTGGTTTTACCGTACTAG 59.766 50.000 3.32 0.00 42.58 2.57
5478 8116 7.857734 TTACAGAGGCAATATCATTTTCGAA 57.142 32.000 0.00 0.00 0.00 3.71
5490 8791 5.862924 TCATTTTCGAAAGTGAGATCCAC 57.137 39.130 26.47 6.29 46.03 4.02
5569 8889 2.784327 GCAAAGTGACATATGCACGACG 60.784 50.000 18.35 13.50 41.04 5.12
5572 8892 1.067846 AGTGACATATGCACGACGTGT 60.068 47.619 27.32 12.63 41.04 4.49
5590 8910 2.030185 GTGTGAGCTTTCTAGACACGGA 60.030 50.000 0.00 0.00 34.93 4.69
5631 8951 3.088532 TGATGTACATGGCCCTTTGTTC 58.911 45.455 14.43 0.07 0.00 3.18
5665 8985 5.062558 CAGTTAAACTTAACCCGGTCATACG 59.937 44.000 0.00 0.00 43.03 3.06
5846 9166 6.326323 AGGTTCTCATACCACCAACAAAAATT 59.674 34.615 0.00 0.00 40.82 1.82
5943 9265 4.356436 GAGGGAGGTTTAGTTGTAGGGTA 58.644 47.826 0.00 0.00 0.00 3.69
5949 9271 5.648247 AGGTTTAGTTGTAGGGTAGAGTCA 58.352 41.667 0.00 0.00 0.00 3.41
5988 9310 4.033709 CCCTCTCCTTCTATTCCTCAACA 58.966 47.826 0.00 0.00 0.00 3.33
5989 9311 4.657969 CCCTCTCCTTCTATTCCTCAACAT 59.342 45.833 0.00 0.00 0.00 2.71
5994 9316 6.441924 TCTCCTTCTATTCCTCAACATCAGTT 59.558 38.462 0.00 0.00 38.88 3.16
6004 9326 4.695455 CCTCAACATCAGTTCCATACGTTT 59.305 41.667 0.00 0.00 35.28 3.60
6007 9329 5.937540 TCAACATCAGTTCCATACGTTTGAT 59.062 36.000 7.64 0.00 35.28 2.57
6027 9349 9.141400 GTTTGATACTACTAAGACTTGTTCCTG 57.859 37.037 0.00 0.00 0.00 3.86
6031 9353 3.686916 ACTAAGACTTGTTCCTGAGGC 57.313 47.619 0.00 0.00 0.00 4.70
6039 9361 2.285668 TTCCTGAGGCCTCCCTGG 60.286 66.667 29.95 25.93 43.12 4.45
6110 9433 3.065233 GTGAATCGAGTGCATGCCAATAA 59.935 43.478 16.68 0.00 0.00 1.40
6169 9493 1.357272 ACCTGCCCTTGTGGTGGTAA 61.357 55.000 0.00 0.00 39.97 2.85
6220 9544 2.094675 GCACCGAGGTGTAAGTAGGTA 58.905 52.381 21.74 0.00 46.90 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.447317 AACGGCCACTGTCTTTGCTG 61.447 55.000 2.24 0.00 36.19 4.41
1 2 0.107831 TAACGGCCACTGTCTTTGCT 59.892 50.000 2.24 0.00 0.00 3.91
3 4 0.517316 GCTAACGGCCACTGTCTTTG 59.483 55.000 2.24 0.00 34.27 2.77
4 5 0.396811 AGCTAACGGCCACTGTCTTT 59.603 50.000 2.24 0.00 43.05 2.52
5 6 0.320771 CAGCTAACGGCCACTGTCTT 60.321 55.000 2.24 0.00 43.05 3.01
6 7 1.293498 CAGCTAACGGCCACTGTCT 59.707 57.895 2.24 0.00 43.05 3.41
8 9 2.358737 GCAGCTAACGGCCACTGT 60.359 61.111 2.24 0.00 43.05 3.55
14 15 2.583593 CGAGAGGCAGCTAACGGC 60.584 66.667 0.00 0.00 42.19 5.68
15 16 2.583593 GCGAGAGGCAGCTAACGG 60.584 66.667 0.00 0.00 42.87 4.44
16 17 0.317436 CTAGCGAGAGGCAGCTAACG 60.317 60.000 0.00 0.00 44.22 3.18
17 18 0.596341 GCTAGCGAGAGGCAGCTAAC 60.596 60.000 0.00 0.00 44.22 2.34
26 27 4.577246 GTGGGCCGCTAGCGAGAG 62.577 72.222 37.39 21.92 45.17 3.20
31 32 4.237207 GTAGGGTGGGCCGCTAGC 62.237 72.222 17.99 4.06 39.08 3.42
32 33 3.547513 GGTAGGGTGGGCCGCTAG 61.548 72.222 17.99 0.00 39.08 3.42
33 34 4.084147 AGGTAGGGTGGGCCGCTA 62.084 66.667 17.99 0.00 37.54 4.26
36 37 2.298661 AAAGAGGTAGGGTGGGCCG 61.299 63.158 0.00 0.00 34.97 6.13
37 38 1.303282 CAAAGAGGTAGGGTGGGCC 59.697 63.158 0.00 0.00 0.00 5.80
38 39 1.378646 GCAAAGAGGTAGGGTGGGC 60.379 63.158 0.00 0.00 0.00 5.36
39 40 1.303282 GGCAAAGAGGTAGGGTGGG 59.697 63.158 0.00 0.00 0.00 4.61
41 42 0.391263 GACGGCAAAGAGGTAGGGTG 60.391 60.000 0.00 0.00 0.00 4.61
43 44 0.108138 CTGACGGCAAAGAGGTAGGG 60.108 60.000 0.00 0.00 0.00 3.53
44 45 0.741221 GCTGACGGCAAAGAGGTAGG 60.741 60.000 0.00 0.00 41.35 3.18
46 47 0.685097 AAGCTGACGGCAAAGAGGTA 59.315 50.000 9.39 0.00 44.79 3.08
48 49 1.871772 CAAGCTGACGGCAAAGAGG 59.128 57.895 9.39 0.00 44.79 3.69
49 50 1.208614 GCAAGCTGACGGCAAAGAG 59.791 57.895 9.39 0.00 44.79 2.85
50 51 2.606961 CGCAAGCTGACGGCAAAGA 61.607 57.895 9.39 0.00 44.79 2.52
51 52 2.127118 CGCAAGCTGACGGCAAAG 60.127 61.111 9.39 0.00 44.79 2.77
52 53 3.659092 CCGCAAGCTGACGGCAAA 61.659 61.111 14.06 0.00 43.44 3.68
58 59 1.495584 TTTGTCGTCCGCAAGCTGAC 61.496 55.000 6.55 6.55 33.60 3.51
60 61 1.205064 CTTTGTCGTCCGCAAGCTG 59.795 57.895 0.00 0.00 0.00 4.24
61 62 1.961277 CCTTTGTCGTCCGCAAGCT 60.961 57.895 0.00 0.00 0.00 3.74
63 64 0.234884 GAACCTTTGTCGTCCGCAAG 59.765 55.000 0.00 0.00 0.00 4.01
64 65 0.179067 AGAACCTTTGTCGTCCGCAA 60.179 50.000 0.00 0.00 0.00 4.85
65 66 0.878523 CAGAACCTTTGTCGTCCGCA 60.879 55.000 0.00 0.00 0.00 5.69
66 67 1.860078 CAGAACCTTTGTCGTCCGC 59.140 57.895 0.00 0.00 0.00 5.54
67 68 0.878523 TGCAGAACCTTTGTCGTCCG 60.879 55.000 0.00 0.00 0.00 4.79
69 70 2.096819 TGTTTGCAGAACCTTTGTCGTC 59.903 45.455 8.60 0.00 0.00 4.20
70 71 2.088423 TGTTTGCAGAACCTTTGTCGT 58.912 42.857 8.60 0.00 0.00 4.34
71 72 2.842208 TGTTTGCAGAACCTTTGTCG 57.158 45.000 8.60 0.00 0.00 4.35
72 73 5.812127 AGAAATTGTTTGCAGAACCTTTGTC 59.188 36.000 8.60 2.53 0.00 3.18
73 74 5.733676 AGAAATTGTTTGCAGAACCTTTGT 58.266 33.333 8.60 5.59 0.00 2.83
74 75 6.667007 AAGAAATTGTTTGCAGAACCTTTG 57.333 33.333 8.60 0.00 0.00 2.77
76 77 6.667007 CAAAGAAATTGTTTGCAGAACCTT 57.333 33.333 2.67 3.37 34.16 3.50
89 90 2.975851 GCAGCTGACGACAAAGAAATTG 59.024 45.455 20.43 0.00 44.95 2.32
91 92 2.498167 AGCAGCTGACGACAAAGAAAT 58.502 42.857 20.43 0.00 0.00 2.17
92 93 1.953559 AGCAGCTGACGACAAAGAAA 58.046 45.000 20.43 0.00 0.00 2.52
93 94 1.867233 GAAGCAGCTGACGACAAAGAA 59.133 47.619 20.43 0.00 0.00 2.52
94 95 1.069204 AGAAGCAGCTGACGACAAAGA 59.931 47.619 20.43 0.00 0.00 2.52
95 96 1.506493 AGAAGCAGCTGACGACAAAG 58.494 50.000 20.43 0.00 0.00 2.77
96 97 1.953559 AAGAAGCAGCTGACGACAAA 58.046 45.000 20.43 0.00 0.00 2.83
97 98 1.599071 CAAAGAAGCAGCTGACGACAA 59.401 47.619 20.43 0.00 0.00 3.18
98 99 1.220529 CAAAGAAGCAGCTGACGACA 58.779 50.000 20.43 0.00 0.00 4.35
99 100 0.110464 GCAAAGAAGCAGCTGACGAC 60.110 55.000 20.43 5.20 0.00 4.34
101 102 1.208614 GGCAAAGAAGCAGCTGACG 59.791 57.895 20.43 0.00 35.83 4.35
102 103 0.886563 ATGGCAAAGAAGCAGCTGAC 59.113 50.000 20.43 9.11 35.83 3.51
103 104 1.171308 GATGGCAAAGAAGCAGCTGA 58.829 50.000 20.43 0.00 35.83 4.26
104 105 0.885879 TGATGGCAAAGAAGCAGCTG 59.114 50.000 10.11 10.11 35.83 4.24
105 106 1.174783 CTGATGGCAAAGAAGCAGCT 58.825 50.000 0.00 0.00 35.83 4.24
107 108 3.655276 AAACTGATGGCAAAGAAGCAG 57.345 42.857 7.48 0.00 35.83 4.24
108 109 3.638160 AGAAAACTGATGGCAAAGAAGCA 59.362 39.130 7.48 0.00 35.83 3.91
109 110 4.248691 AGAAAACTGATGGCAAAGAAGC 57.751 40.909 7.48 0.00 0.00 3.86
110 111 5.835257 TGAAGAAAACTGATGGCAAAGAAG 58.165 37.500 7.48 0.00 0.00 2.85
111 112 5.850557 TGAAGAAAACTGATGGCAAAGAA 57.149 34.783 7.48 0.00 0.00 2.52
113 114 4.446719 GCTTGAAGAAAACTGATGGCAAAG 59.553 41.667 0.00 0.00 0.00 2.77
115 116 3.638160 AGCTTGAAGAAAACTGATGGCAA 59.362 39.130 0.00 0.00 0.00 4.52
117 118 3.254166 TCAGCTTGAAGAAAACTGATGGC 59.746 43.478 0.00 0.00 32.65 4.40
118 119 5.640189 ATCAGCTTGAAGAAAACTGATGG 57.360 39.130 10.80 0.00 44.29 3.51
120 121 4.082354 GCCATCAGCTTGAAGAAAACTGAT 60.082 41.667 7.07 7.07 46.29 2.90
121 122 3.254166 GCCATCAGCTTGAAGAAAACTGA 59.746 43.478 0.00 0.00 41.28 3.41
122 123 3.005050 TGCCATCAGCTTGAAGAAAACTG 59.995 43.478 0.00 0.00 44.23 3.16
124 125 3.648339 TGCCATCAGCTTGAAGAAAAC 57.352 42.857 0.00 0.00 44.23 2.43
125 126 4.341806 TCTTTGCCATCAGCTTGAAGAAAA 59.658 37.500 0.00 0.00 44.23 2.29
126 127 3.890756 TCTTTGCCATCAGCTTGAAGAAA 59.109 39.130 0.00 0.00 44.23 2.52
127 128 3.254166 GTCTTTGCCATCAGCTTGAAGAA 59.746 43.478 0.00 0.00 44.23 2.52
128 129 2.816087 GTCTTTGCCATCAGCTTGAAGA 59.184 45.455 0.00 0.00 44.23 2.87
129 130 2.094854 GGTCTTTGCCATCAGCTTGAAG 60.095 50.000 0.00 0.00 44.23 3.02
130 131 1.888512 GGTCTTTGCCATCAGCTTGAA 59.111 47.619 0.00 0.00 44.23 2.69
131 132 1.538047 GGTCTTTGCCATCAGCTTGA 58.462 50.000 0.00 0.00 44.23 3.02
133 134 0.407139 AGGGTCTTTGCCATCAGCTT 59.593 50.000 0.00 0.00 44.23 3.74
135 136 0.034670 AGAGGGTCTTTGCCATCAGC 60.035 55.000 0.00 0.00 41.38 4.26
136 137 2.503895 AAGAGGGTCTTTGCCATCAG 57.496 50.000 0.00 0.00 41.38 2.90
137 138 2.978156 AAAGAGGGTCTTTGCCATCA 57.022 45.000 1.09 0.00 44.34 3.07
145 146 1.615384 GCTGATGGCAAAGAGGGTCTT 60.615 52.381 4.85 0.00 38.59 3.01
148 149 1.211457 CTAGCTGATGGCAAAGAGGGT 59.789 52.381 0.00 0.00 44.79 4.34
149 150 1.964552 CTAGCTGATGGCAAAGAGGG 58.035 55.000 0.00 0.00 44.79 4.30
151 152 1.941294 CAGCTAGCTGATGGCAAAGAG 59.059 52.381 36.47 7.39 46.30 2.85
153 154 2.034104 TCAGCTAGCTGATGGCAAAG 57.966 50.000 37.64 14.25 46.80 2.77
162 163 0.390340 TCTTTGCCGTCAGCTAGCTG 60.390 55.000 34.48 34.48 44.23 4.24
164 165 0.444260 GTTCTTTGCCGTCAGCTAGC 59.556 55.000 6.62 6.62 44.23 3.42
165 166 1.079503 GGTTCTTTGCCGTCAGCTAG 58.920 55.000 0.00 0.00 44.23 3.42
166 167 0.669318 CGGTTCTTTGCCGTCAGCTA 60.669 55.000 0.00 0.00 43.84 3.32
167 168 1.961277 CGGTTCTTTGCCGTCAGCT 60.961 57.895 0.00 0.00 43.84 4.24
168 169 2.556287 CGGTTCTTTGCCGTCAGC 59.444 61.111 0.00 0.00 43.84 4.26
174 175 1.581447 CTTCAGCCGGTTCTTTGCC 59.419 57.895 1.90 0.00 0.00 4.52
175 176 1.581447 CCTTCAGCCGGTTCTTTGC 59.419 57.895 1.90 0.00 0.00 3.68
177 178 0.467290 TTGCCTTCAGCCGGTTCTTT 60.467 50.000 1.90 0.00 42.71 2.52
178 179 0.467290 TTTGCCTTCAGCCGGTTCTT 60.467 50.000 1.90 0.00 42.71 2.52
179 180 0.890996 CTTTGCCTTCAGCCGGTTCT 60.891 55.000 1.90 0.00 42.71 3.01
180 181 1.172812 ACTTTGCCTTCAGCCGGTTC 61.173 55.000 1.90 0.00 42.71 3.62
181 182 0.755327 AACTTTGCCTTCAGCCGGTT 60.755 50.000 1.90 0.00 42.71 4.44
182 183 1.152756 AACTTTGCCTTCAGCCGGT 60.153 52.632 1.90 0.00 42.71 5.28
183 184 1.581447 GAACTTTGCCTTCAGCCGG 59.419 57.895 0.00 0.00 42.71 6.13
185 186 0.600057 CAGGAACTTTGCCTTCAGCC 59.400 55.000 0.00 0.00 37.31 4.85
186 187 1.609208 TCAGGAACTTTGCCTTCAGC 58.391 50.000 0.00 0.00 38.67 4.26
187 188 3.192212 GGAATCAGGAACTTTGCCTTCAG 59.808 47.826 0.00 0.00 34.60 3.02
188 189 3.157087 GGAATCAGGAACTTTGCCTTCA 58.843 45.455 0.00 0.00 34.60 3.02
189 190 3.157087 TGGAATCAGGAACTTTGCCTTC 58.843 45.455 0.00 0.00 34.60 3.46
190 191 3.243359 TGGAATCAGGAACTTTGCCTT 57.757 42.857 0.00 0.00 34.60 4.35
191 192 2.978156 TGGAATCAGGAACTTTGCCT 57.022 45.000 0.00 0.00 34.60 4.75
193 194 5.183904 ACACTATTGGAATCAGGAACTTTGC 59.816 40.000 0.00 0.00 34.60 3.68
194 195 6.824305 ACACTATTGGAATCAGGAACTTTG 57.176 37.500 0.00 0.00 34.60 2.77
195 196 7.121315 GCTTACACTATTGGAATCAGGAACTTT 59.879 37.037 0.00 0.00 34.60 2.66
196 197 6.599638 GCTTACACTATTGGAATCAGGAACTT 59.400 38.462 0.00 0.00 34.60 2.66
197 198 6.116126 GCTTACACTATTGGAATCAGGAACT 58.884 40.000 0.00 0.00 43.88 3.01
200 201 5.692115 TGCTTACACTATTGGAATCAGGA 57.308 39.130 0.00 0.00 0.00 3.86
201 202 6.057533 TGATGCTTACACTATTGGAATCAGG 58.942 40.000 0.00 0.00 25.06 3.86
202 203 7.741027 ATGATGCTTACACTATTGGAATCAG 57.259 36.000 0.00 0.00 25.06 2.90
217 218 9.586435 CGACACAATTCCTATATATGATGCTTA 57.414 33.333 0.00 0.00 0.00 3.09
218 219 7.065085 GCGACACAATTCCTATATATGATGCTT 59.935 37.037 0.00 0.00 0.00 3.91
219 220 6.536582 GCGACACAATTCCTATATATGATGCT 59.463 38.462 0.00 0.00 0.00 3.79
220 221 6.508563 CGCGACACAATTCCTATATATGATGC 60.509 42.308 0.00 0.00 0.00 3.91
221 222 6.751888 TCGCGACACAATTCCTATATATGATG 59.248 38.462 3.71 0.00 0.00 3.07
222 223 6.752351 GTCGCGACACAATTCCTATATATGAT 59.248 38.462 33.09 0.00 0.00 2.45
223 224 6.090783 GTCGCGACACAATTCCTATATATGA 58.909 40.000 33.09 0.00 0.00 2.15
237 238 2.656007 GAACGTGGTCGCGACACA 60.656 61.111 37.26 28.72 41.18 3.72
260 261 6.677781 AAGTTTGACTTGAAAATCAGTCGA 57.322 33.333 0.00 0.00 37.00 4.20
262 263 6.851330 CGGTAAGTTTGACTTGAAAATCAGTC 59.149 38.462 3.70 0.00 39.11 3.51
263 264 6.238648 CCGGTAAGTTTGACTTGAAAATCAGT 60.239 38.462 0.00 0.00 39.11 3.41
264 265 6.017440 TCCGGTAAGTTTGACTTGAAAATCAG 60.017 38.462 0.00 0.00 39.11 2.90
309 312 2.681344 ACTTTTTGGTGTCTTGACCGAC 59.319 45.455 0.00 0.00 39.07 4.79
312 315 6.391537 TGTTTTACTTTTTGGTGTCTTGACC 58.608 36.000 0.00 0.00 36.43 4.02
318 321 8.387354 CCTTTTGATGTTTTACTTTTTGGTGTC 58.613 33.333 0.00 0.00 0.00 3.67
337 340 3.361977 GGCGCGGCTTCCTTTTGA 61.362 61.111 27.05 0.00 0.00 2.69
355 358 1.344065 TCGGTTCCTTGCCTTACAGA 58.656 50.000 0.00 0.00 0.00 3.41
358 361 3.425758 CGAAATTCGGTTCCTTGCCTTAC 60.426 47.826 7.61 0.00 36.00 2.34
375 378 1.024271 CATGAATGGTCCGCCGAAAT 58.976 50.000 0.00 0.00 37.67 2.17
474 481 5.010820 ACCTCTTTATATAGTGGGTTCTCGC 59.989 44.000 13.64 0.00 33.97 5.03
517 524 3.064958 GCTAAAGTTTAATCTCGTGCCCC 59.935 47.826 0.00 0.00 0.00 5.80
520 527 4.142902 TGCTGCTAAAGTTTAATCTCGTGC 60.143 41.667 0.00 0.00 0.00 5.34
523 530 4.201822 GGGTGCTGCTAAAGTTTAATCTCG 60.202 45.833 0.00 0.00 0.00 4.04
554 1597 1.201414 GGCCCATGTGAAAACGGTAAG 59.799 52.381 0.00 0.00 0.00 2.34
555 1598 1.249407 GGCCCATGTGAAAACGGTAA 58.751 50.000 0.00 0.00 0.00 2.85
556 1599 0.110678 TGGCCCATGTGAAAACGGTA 59.889 50.000 0.00 0.00 0.00 4.02
557 1600 1.152652 TGGCCCATGTGAAAACGGT 60.153 52.632 0.00 0.00 0.00 4.83
558 1601 1.178534 AGTGGCCCATGTGAAAACGG 61.179 55.000 0.00 0.00 0.00 4.44
560 1603 2.482864 CAAAGTGGCCCATGTGAAAAC 58.517 47.619 0.00 0.00 0.00 2.43
589 1632 4.774726 TGGGCTTGGCTCATTAACAATTTA 59.225 37.500 0.00 0.00 32.27 1.40
602 1645 5.022787 TGTTAGAAATAAATGGGCTTGGCT 58.977 37.500 0.00 0.00 0.00 4.75
603 1646 5.337578 TGTTAGAAATAAATGGGCTTGGC 57.662 39.130 0.00 0.00 0.00 4.52
608 1651 4.158949 ACGGGTTGTTAGAAATAAATGGGC 59.841 41.667 0.00 0.00 0.00 5.36
622 1665 7.766738 AGAAATAAATGTTTTTGACGGGTTGTT 59.233 29.630 0.00 0.00 0.00 2.83
661 1704 2.724977 TGACTCGTCAAAGCTACAGG 57.275 50.000 0.00 0.00 36.53 4.00
762 1805 1.487452 CCGCCGAATACATGGACGTG 61.487 60.000 0.00 0.00 0.00 4.49
788 1831 1.633561 GACCGTACGAGCCTTTTACC 58.366 55.000 18.76 0.00 0.00 2.85
856 1901 2.128771 TGTAGCAGGGAAGAAATGGC 57.871 50.000 0.00 0.00 0.00 4.40
926 1977 2.849880 TGTGAGCTTGAAAGTGTTGC 57.150 45.000 0.00 0.00 0.00 4.17
955 2006 2.731976 GACCTTGATTGTGAGTCGTGAC 59.268 50.000 0.00 0.00 0.00 3.67
1329 2426 4.382320 TCCACGGCGCCCTTGTAC 62.382 66.667 23.46 0.00 0.00 2.90
1344 2441 2.027625 CGGCTTGACCTTGTCGTCC 61.028 63.158 0.00 0.00 34.95 4.79
1475 2769 2.462456 TCACACGTACTCCTACTCGT 57.538 50.000 0.00 0.00 36.99 4.18
1476 2770 2.539142 GCATCACACGTACTCCTACTCG 60.539 54.545 0.00 0.00 0.00 4.18
1479 2773 2.527100 GTGCATCACACGTACTCCTAC 58.473 52.381 0.00 0.00 40.07 3.18
1480 2774 2.933495 GTGCATCACACGTACTCCTA 57.067 50.000 0.00 0.00 40.07 2.94
1481 2775 3.814577 GTGCATCACACGTACTCCT 57.185 52.632 0.00 0.00 40.07 3.69
1529 2823 1.616620 CGCCAAAACAATCATCACCG 58.383 50.000 0.00 0.00 0.00 4.94
1534 2831 1.401409 CGACTGCGCCAAAACAATCAT 60.401 47.619 4.18 0.00 0.00 2.45
1537 2834 1.169661 TCCGACTGCGCCAAAACAAT 61.170 50.000 4.18 0.00 35.83 2.71
1541 2838 2.668212 CCTCCGACTGCGCCAAAA 60.668 61.111 4.18 0.00 35.83 2.44
1547 2844 0.526524 GAAGATCACCTCCGACTGCG 60.527 60.000 0.00 0.00 37.24 5.18
1614 2911 2.257371 CGGTTCTCGTCCTCGCAA 59.743 61.111 0.00 0.00 36.96 4.85
1863 3185 4.627467 ACGTATGTGCAAGTCTTCAAGATC 59.373 41.667 0.00 0.00 0.00 2.75
2110 3463 5.276963 CGTGCACAAATCAAGCTCAAAAATT 60.277 36.000 18.64 0.00 0.00 1.82
2118 3471 0.235665 CGTCGTGCACAAATCAAGCT 59.764 50.000 18.64 0.00 0.00 3.74
2121 3474 1.291132 TCACGTCGTGCACAAATCAA 58.709 45.000 20.56 0.00 32.98 2.57
2122 3475 1.291132 TTCACGTCGTGCACAAATCA 58.709 45.000 20.56 0.00 32.98 2.57
2126 3479 1.003331 GGATTTTCACGTCGTGCACAA 60.003 47.619 20.56 12.40 32.98 3.33
2226 3942 8.915057 ATTAGTTAATGAGAAGTGCTATGCAT 57.085 30.769 3.79 3.79 41.91 3.96
2383 4106 0.506080 CAAGCGATAGATGCTGACGC 59.494 55.000 0.00 0.00 43.14 5.19
2586 4312 1.145803 GCTCGTGTGTAAACCCTCAC 58.854 55.000 0.00 0.00 35.43 3.51
2650 4380 5.942826 AGAATCAAAGGATGGAAGTTCAGAC 59.057 40.000 5.01 0.00 32.92 3.51
2708 4443 2.572333 ATCAATTCCCACCCGCCCAG 62.572 60.000 0.00 0.00 0.00 4.45
2893 4632 0.519999 GCAAGTTTGATCAGAGCGCG 60.520 55.000 0.00 0.00 0.00 6.86
2948 4689 8.353423 AGCTATCATAAAACAACCAATCAACT 57.647 30.769 0.00 0.00 0.00 3.16
2966 4707 2.224042 CGGCATGAGTGGTTAGCTATCA 60.224 50.000 0.00 0.00 0.00 2.15
3065 4815 1.185315 TCGTGATCAGAGTCCATGCA 58.815 50.000 0.00 0.00 0.00 3.96
3082 4837 1.788886 CACATAGGCGTCATCACATCG 59.211 52.381 0.00 0.00 0.00 3.84
3219 5288 1.376424 CCACTGCGATGTTCAGCCT 60.376 57.895 0.00 0.00 35.04 4.58
3376 5445 4.754618 CCCCAGCCAAACAAAATAAACTTC 59.245 41.667 0.00 0.00 0.00 3.01
3388 5457 1.527433 GAACTGCTCCCCAGCCAAAC 61.527 60.000 0.00 0.00 46.26 2.93
3553 5718 1.593196 TTTCAGGGTTTGACGAGCTG 58.407 50.000 0.00 0.00 34.94 4.24
3565 5730 3.031013 ACCAACTTCAAGGTTTTCAGGG 58.969 45.455 0.00 0.00 33.39 4.45
3637 5802 2.424601 TGTGTATACTACTCGCCCACAC 59.575 50.000 4.17 0.00 36.28 3.82
3638 5803 2.725637 TGTGTATACTACTCGCCCACA 58.274 47.619 4.17 0.00 0.00 4.17
3737 5932 3.854286 TCAACGTTCTCGCTTTCTTTC 57.146 42.857 0.00 0.00 41.18 2.62
3813 6009 9.574516 ACCTGAACTGATTTTTGATTAGTAGTT 57.425 29.630 0.00 0.00 0.00 2.24
3816 6012 9.162764 GCTACCTGAACTGATTTTTGATTAGTA 57.837 33.333 0.00 0.00 0.00 1.82
3817 6013 7.121315 GGCTACCTGAACTGATTTTTGATTAGT 59.879 37.037 0.00 0.00 0.00 2.24
3818 6014 7.121168 TGGCTACCTGAACTGATTTTTGATTAG 59.879 37.037 0.00 0.00 0.00 1.73
3819 6015 6.945435 TGGCTACCTGAACTGATTTTTGATTA 59.055 34.615 0.00 0.00 0.00 1.75
3823 6019 5.222631 GTTGGCTACCTGAACTGATTTTTG 58.777 41.667 0.00 0.00 0.00 2.44
3873 6076 7.331934 GCCTTCCAATTTGTTTCCTTTCTTATC 59.668 37.037 0.00 0.00 0.00 1.75
3953 6159 4.379143 GTCGTTCGGCGCCCAAAC 62.379 66.667 23.46 23.23 41.07 2.93
4334 6540 0.577269 CTTTCGAATAGGCCTTCGCG 59.423 55.000 19.93 16.22 45.80 5.87
4349 6555 5.573337 ATTTGGCTAGAGTGCATTCTTTC 57.427 39.130 17.59 9.12 34.04 2.62
4404 6617 3.188460 TGGAAAGTTCTTGCTTATGACGC 59.812 43.478 0.00 0.00 0.00 5.19
4413 6626 4.142381 ACACAAACTCTGGAAAGTTCTTGC 60.142 41.667 0.00 0.00 38.52 4.01
4417 6630 4.331717 TCGAACACAAACTCTGGAAAGTTC 59.668 41.667 0.00 0.00 38.52 3.01
4430 6643 2.542020 TGAGCTCCATCGAACACAAA 57.458 45.000 12.15 0.00 0.00 2.83
4470 6683 3.717400 TTTTAGCACCACATCGCAAAA 57.283 38.095 0.00 0.00 0.00 2.44
4471 6684 3.573598 CATTTTAGCACCACATCGCAAA 58.426 40.909 0.00 0.00 0.00 3.68
4506 6719 0.613260 TTCGCCTTGTAGTCCTGCAT 59.387 50.000 0.00 0.00 0.00 3.96
4508 6721 0.037232 ACTTCGCCTTGTAGTCCTGC 60.037 55.000 0.00 0.00 0.00 4.85
4547 6760 2.040412 GTCACCTTCTGGTCCATCCTTT 59.960 50.000 0.00 0.00 46.60 3.11
4559 6772 0.898320 CATGGGTCTCGTCACCTTCT 59.102 55.000 5.66 0.00 36.57 2.85
4808 7266 2.091994 GTGGTGCTCCCTACTAGGTCTA 60.092 54.545 1.59 0.00 31.93 2.59
4811 7269 0.325390 GGTGGTGCTCCCTACTAGGT 60.325 60.000 1.59 0.00 31.93 3.08
4918 7474 1.452651 GCTGCCTTATGAGCTGCCA 60.453 57.895 0.00 0.00 46.05 4.92
5004 7560 2.551071 GGTTGAGCAGCAGTTCTAGGTT 60.551 50.000 0.00 0.00 0.00 3.50
5046 7602 1.094785 GCTACATGCATCACCGGTTT 58.905 50.000 2.97 0.00 42.31 3.27
5048 7604 0.253044 AAGCTACATGCATCACCGGT 59.747 50.000 0.00 0.00 45.94 5.28
5092 7648 5.948742 TTCCCCATTTCTTCTTGTTGTTT 57.051 34.783 0.00 0.00 0.00 2.83
5098 7654 3.766051 CTCCCTTTCCCCATTTCTTCTTG 59.234 47.826 0.00 0.00 0.00 3.02
5111 7667 3.225940 CCCATTATTGCTCTCCCTTTCC 58.774 50.000 0.00 0.00 0.00 3.13
5114 7670 1.500736 CCCCCATTATTGCTCTCCCTT 59.499 52.381 0.00 0.00 0.00 3.95
5129 7685 1.614850 GCTTTATTTCGGTGACCCCCA 60.615 52.381 0.00 0.00 0.00 4.96
5141 7697 0.623723 TCGGAGGCCTGGCTTTATTT 59.376 50.000 12.00 0.00 0.00 1.40
5239 7795 7.549488 CACCCAAAGAAAGTGTCCTACTATTAG 59.451 40.741 0.00 0.00 39.18 1.73
5320 7876 5.602291 TTAACAAATTAGGGAAGGGTGGA 57.398 39.130 0.00 0.00 0.00 4.02
5321 7877 6.867519 AATTAACAAATTAGGGAAGGGTGG 57.132 37.500 0.00 0.00 0.00 4.61
5361 7997 0.538746 ACGGTAAAACCAGGCCAAGG 60.539 55.000 5.01 9.48 38.47 3.61
5455 8093 7.552687 ACTTTCGAAAATGATATTGCCTCTGTA 59.447 33.333 12.41 0.00 0.00 2.74
5463 8101 8.615211 TGGATCTCACTTTCGAAAATGATATTG 58.385 33.333 20.97 10.56 0.00 1.90
5465 8103 7.770433 TGTGGATCTCACTTTCGAAAATGATAT 59.230 33.333 20.97 18.76 46.20 1.63
5478 8116 4.505742 GGACTTTCCTTGTGGATCTCACTT 60.506 45.833 13.32 0.00 42.81 3.16
5490 8791 3.107642 ACTGTACGTGGACTTTCCTTG 57.892 47.619 0.00 0.00 37.46 3.61
5554 8874 1.068194 TCACACGTCGTGCATATGTCA 60.068 47.619 24.80 0.11 45.92 3.58
5569 8889 2.030185 TCCGTGTCTAGAAAGCTCACAC 60.030 50.000 10.12 5.24 35.89 3.82
5572 8892 2.231478 CCTTCCGTGTCTAGAAAGCTCA 59.769 50.000 0.00 0.00 0.00 4.26
5590 8910 0.468029 CTGGTGTGGCCTTTGTCCTT 60.468 55.000 3.32 0.00 38.35 3.36
5631 8951 7.096230 CGGGTTAAGTTTAACTGCAAAGAAATG 60.096 37.037 12.89 0.00 42.00 2.32
5665 8985 2.047179 GGCCTCGTGAACTGGACC 60.047 66.667 0.00 0.00 0.00 4.46
5709 9029 2.297701 GGTTGCACTTTGGACTTGAGA 58.702 47.619 0.00 0.00 0.00 3.27
5760 9080 7.812191 TCATTGTTGCTCGCTAATGTTTTATTT 59.188 29.630 0.00 0.00 33.46 1.40
5763 9083 6.247727 TCATTGTTGCTCGCTAATGTTTTA 57.752 33.333 0.00 0.00 33.46 1.52
5768 9088 4.034858 ACTGATCATTGTTGCTCGCTAATG 59.965 41.667 0.00 0.00 33.09 1.90
5917 9239 4.891756 CCTACAACTAAACCTCCCTCGATA 59.108 45.833 0.00 0.00 0.00 2.92
5949 9271 5.367060 GGAGAGGGTATTTGGAGTCTTGTAT 59.633 44.000 0.00 0.00 0.00 2.29
5988 9310 8.008513 AGTAGTATCAAACGTATGGAACTGAT 57.991 34.615 0.00 0.00 0.00 2.90
5989 9311 7.400599 AGTAGTATCAAACGTATGGAACTGA 57.599 36.000 0.00 0.00 0.00 3.41
5994 9316 8.743085 AGTCTTAGTAGTATCAAACGTATGGA 57.257 34.615 0.00 0.00 0.00 3.41
6004 9326 7.339721 CCTCAGGAACAAGTCTTAGTAGTATCA 59.660 40.741 0.00 0.00 0.00 2.15
6007 9329 5.418209 GCCTCAGGAACAAGTCTTAGTAGTA 59.582 44.000 0.00 0.00 0.00 1.82
6031 9353 1.227556 CCGAAATACGCCAGGGAGG 60.228 63.158 0.00 0.00 41.07 4.30
6039 9361 2.534757 GCACTAGAACTCCGAAATACGC 59.465 50.000 0.00 0.00 41.07 4.42
6040 9362 3.114065 GGCACTAGAACTCCGAAATACG 58.886 50.000 0.00 0.00 42.18 3.06
6042 9364 3.101437 TGGGCACTAGAACTCCGAAATA 58.899 45.455 0.00 0.00 0.00 1.40
6110 9433 4.282496 ACCTAGAGCATATATAAGCCGCT 58.718 43.478 6.34 7.14 35.14 5.52
6201 9525 7.908458 GGCAATACCTACTTACACCTCGGTG 62.908 52.000 14.30 14.30 42.96 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.