Multiple sequence alignment - TraesCS7D01G459800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G459800 chr7D 100.000 2783 0 0 1 2783 576749183 576751965 0.000000e+00 5140.0
1 TraesCS7D01G459800 chr7D 88.770 1211 110 17 1187 2382 576674546 576673347 0.000000e+00 1459.0
2 TraesCS7D01G459800 chr7D 88.387 155 15 3 2483 2636 576673235 576673083 1.700000e-42 183.0
3 TraesCS7D01G459800 chr7D 88.889 81 1 3 316 394 576674914 576674840 2.950000e-15 93.5
4 TraesCS7D01G459800 chr7B 86.336 2298 202 49 390 2636 639364858 639362622 0.000000e+00 2401.0
5 TraesCS7D01G459800 chr7B 80.068 1460 241 31 971 2402 639515672 639514235 0.000000e+00 1038.0
6 TraesCS7D01G459800 chr7B 89.370 254 18 6 26 271 639413838 639414090 7.480000e-81 311.0
7 TraesCS7D01G459800 chr7B 85.294 170 9 10 137 303 639377816 639377660 7.980000e-36 161.0
8 TraesCS7D01G459800 chr7B 91.667 60 5 0 2714 2773 639362540 639362481 1.780000e-12 84.2
9 TraesCS7D01G459800 chr7B 100.000 29 0 0 347 375 639364927 639364899 1.000000e-03 54.7
10 TraesCS7D01G459800 chr7A 83.576 2064 207 69 384 2393 668257891 668255906 0.000000e+00 1812.0
11 TraesCS7D01G459800 chr7A 89.103 1404 119 16 809 2199 668099638 668098256 0.000000e+00 1714.0
12 TraesCS7D01G459800 chr7A 81.970 1137 146 33 1423 2511 668770258 668769133 0.000000e+00 909.0
13 TraesCS7D01G459800 chr7A 90.058 171 15 1 1918 2086 668569742 668569912 1.300000e-53 220.0
14 TraesCS7D01G459800 chr7A 75.286 437 97 7 1703 2132 668250767 668251199 6.080000e-47 198.0
15 TraesCS7D01G459800 chr7A 88.961 154 7 3 316 469 668567824 668567967 6.120000e-42 182.0
16 TraesCS7D01G459800 chr7A 82.812 192 21 8 90 272 668567624 668567812 7.980000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G459800 chr7D 576749183 576751965 2782 False 5140.000000 5140 100.000000 1 2783 1 chr7D.!!$F1 2782
1 TraesCS7D01G459800 chr7D 576673083 576674914 1831 True 578.500000 1459 88.682000 316 2636 3 chr7D.!!$R1 2320
2 TraesCS7D01G459800 chr7B 639514235 639515672 1437 True 1038.000000 1038 80.068000 971 2402 1 chr7B.!!$R2 1431
3 TraesCS7D01G459800 chr7B 639362481 639364927 2446 True 846.633333 2401 92.667667 347 2773 3 chr7B.!!$R3 2426
4 TraesCS7D01G459800 chr7A 668255906 668257891 1985 True 1812.000000 1812 83.576000 384 2393 1 chr7A.!!$R2 2009
5 TraesCS7D01G459800 chr7A 668098256 668099638 1382 True 1714.000000 1714 89.103000 809 2199 1 chr7A.!!$R1 1390
6 TraesCS7D01G459800 chr7A 668769133 668770258 1125 True 909.000000 909 81.970000 1423 2511 1 chr7A.!!$R3 1088

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 0.031314 GCGATCCGATCTGAGCAAGA 59.969 55.0 6.81 0.0 39.94 3.02 F
526 596 0.105453 ACCTCCCTCGCTACCATCAT 60.105 55.0 0.00 0.0 0.00 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1523 1663 0.176449 CTGCAGGATCGGTGATGACA 59.824 55.0 5.57 0.0 0.00 3.58 R
2358 2512 0.112218 ACCAAGCTGGGCACACATAA 59.888 50.0 7.20 0.0 43.37 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.395519 TGTGGTTGGCGATGAAGG 57.604 55.556 0.00 0.00 0.00 3.46
18 19 1.757949 TGTGGTTGGCGATGAAGGA 59.242 52.632 0.00 0.00 0.00 3.36
19 20 0.321564 TGTGGTTGGCGATGAAGGAG 60.322 55.000 0.00 0.00 0.00 3.69
20 21 0.036388 GTGGTTGGCGATGAAGGAGA 60.036 55.000 0.00 0.00 0.00 3.71
21 22 0.690192 TGGTTGGCGATGAAGGAGAA 59.310 50.000 0.00 0.00 0.00 2.87
22 23 1.281867 TGGTTGGCGATGAAGGAGAAT 59.718 47.619 0.00 0.00 0.00 2.40
23 24 2.290896 TGGTTGGCGATGAAGGAGAATT 60.291 45.455 0.00 0.00 0.00 2.17
24 25 2.098117 GGTTGGCGATGAAGGAGAATTG 59.902 50.000 0.00 0.00 0.00 2.32
25 26 2.042686 TGGCGATGAAGGAGAATTGG 57.957 50.000 0.00 0.00 0.00 3.16
26 27 0.665298 GGCGATGAAGGAGAATTGGC 59.335 55.000 0.00 0.00 0.00 4.52
27 28 1.382522 GCGATGAAGGAGAATTGGCA 58.617 50.000 0.00 0.00 0.00 4.92
28 29 1.064654 GCGATGAAGGAGAATTGGCAC 59.935 52.381 0.00 0.00 0.00 5.01
29 30 1.672881 CGATGAAGGAGAATTGGCACC 59.327 52.381 0.00 0.00 0.00 5.01
30 31 2.726821 GATGAAGGAGAATTGGCACCA 58.273 47.619 0.00 0.00 0.00 4.17
31 32 1.909700 TGAAGGAGAATTGGCACCAC 58.090 50.000 0.00 0.00 0.00 4.16
32 33 1.177401 GAAGGAGAATTGGCACCACC 58.823 55.000 0.00 0.00 39.84 4.61
33 34 0.609131 AAGGAGAATTGGCACCACCG 60.609 55.000 0.00 0.00 43.94 4.94
34 35 2.046285 GGAGAATTGGCACCACCGG 61.046 63.158 0.00 0.00 43.94 5.28
35 36 1.303317 GAGAATTGGCACCACCGGT 60.303 57.895 0.00 0.00 43.94 5.28
36 37 0.893727 GAGAATTGGCACCACCGGTT 60.894 55.000 2.97 0.00 43.94 4.44
37 38 1.178534 AGAATTGGCACCACCGGTTG 61.179 55.000 2.97 3.38 43.94 3.77
67 68 4.586235 GCTGCTGGTGGTGGTGGT 62.586 66.667 0.00 0.00 0.00 4.16
68 69 2.595463 CTGCTGGTGGTGGTGGTG 60.595 66.667 0.00 0.00 0.00 4.17
69 70 4.202574 TGCTGGTGGTGGTGGTGG 62.203 66.667 0.00 0.00 0.00 4.61
70 71 4.204028 GCTGGTGGTGGTGGTGGT 62.204 66.667 0.00 0.00 0.00 4.16
71 72 2.824880 GCTGGTGGTGGTGGTGGTA 61.825 63.158 0.00 0.00 0.00 3.25
72 73 1.374947 CTGGTGGTGGTGGTGGTAG 59.625 63.158 0.00 0.00 0.00 3.18
73 74 2.124507 CTGGTGGTGGTGGTGGTAGG 62.125 65.000 0.00 0.00 0.00 3.18
74 75 2.033602 GTGGTGGTGGTGGTAGGC 59.966 66.667 0.00 0.00 0.00 3.93
75 76 3.632080 TGGTGGTGGTGGTAGGCG 61.632 66.667 0.00 0.00 0.00 5.52
76 77 3.633116 GGTGGTGGTGGTAGGCGT 61.633 66.667 0.00 0.00 0.00 5.68
77 78 2.428622 GTGGTGGTGGTAGGCGTT 59.571 61.111 0.00 0.00 0.00 4.84
78 79 1.672898 GTGGTGGTGGTAGGCGTTA 59.327 57.895 0.00 0.00 0.00 3.18
79 80 0.035176 GTGGTGGTGGTAGGCGTTAA 59.965 55.000 0.00 0.00 0.00 2.01
80 81 0.985760 TGGTGGTGGTAGGCGTTAAT 59.014 50.000 0.00 0.00 0.00 1.40
81 82 1.339247 TGGTGGTGGTAGGCGTTAATG 60.339 52.381 0.00 0.00 0.00 1.90
82 83 1.375551 GTGGTGGTAGGCGTTAATGG 58.624 55.000 0.00 0.00 0.00 3.16
83 84 0.393267 TGGTGGTAGGCGTTAATGGC 60.393 55.000 13.14 13.14 0.00 4.40
84 85 1.433837 GGTGGTAGGCGTTAATGGCG 61.434 60.000 14.88 0.00 39.82 5.69
85 86 0.741927 GTGGTAGGCGTTAATGGCGT 60.742 55.000 14.88 8.43 39.82 5.68
86 87 0.741574 TGGTAGGCGTTAATGGCGTG 60.742 55.000 14.88 0.00 39.82 5.34
87 88 1.433837 GGTAGGCGTTAATGGCGTGG 61.434 60.000 14.88 0.00 39.82 4.94
88 89 1.816259 TAGGCGTTAATGGCGTGGC 60.816 57.895 14.88 0.00 39.82 5.01
89 90 4.530325 GGCGTTAATGGCGTGGCG 62.530 66.667 5.37 0.00 0.00 5.69
90 91 3.795342 GCGTTAATGGCGTGGCGT 61.795 61.111 0.00 0.00 0.00 5.68
91 92 2.398036 CGTTAATGGCGTGGCGTC 59.602 61.111 0.00 0.00 0.00 5.19
93 94 1.133869 GTTAATGGCGTGGCGTCAC 59.866 57.895 10.89 10.89 46.32 3.67
94 95 2.036006 TTAATGGCGTGGCGTCACC 61.036 57.895 15.72 7.34 46.32 4.02
95 96 2.733319 TTAATGGCGTGGCGTCACCA 62.733 55.000 15.72 8.38 46.32 4.17
102 103 2.046988 TGGCGTCACCATGAGCAG 60.047 61.111 0.00 0.00 46.36 4.24
103 104 2.046892 GGCGTCACCATGAGCAGT 60.047 61.111 0.00 0.00 38.86 4.40
104 105 2.103042 GGCGTCACCATGAGCAGTC 61.103 63.158 0.00 0.00 38.86 3.51
105 106 2.447887 GCGTCACCATGAGCAGTCG 61.448 63.158 0.00 0.00 0.00 4.18
106 107 2.447887 CGTCACCATGAGCAGTCGC 61.448 63.158 0.00 0.00 38.99 5.19
116 117 3.649986 GCAGTCGCTGGCGTTTGT 61.650 61.111 14.55 0.00 40.74 2.83
117 118 2.551270 CAGTCGCTGGCGTTTGTC 59.449 61.111 14.55 2.74 40.74 3.18
118 119 3.036084 AGTCGCTGGCGTTTGTCG 61.036 61.111 14.55 0.00 40.74 4.35
119 120 3.033764 GTCGCTGGCGTTTGTCGA 61.034 61.111 14.55 0.00 42.86 4.20
125 126 4.036977 GGCGTTTGTCGACCAGAA 57.963 55.556 14.12 2.47 42.54 3.02
126 127 1.860078 GGCGTTTGTCGACCAGAAG 59.140 57.895 14.12 2.45 42.54 2.85
127 128 1.204312 GCGTTTGTCGACCAGAAGC 59.796 57.895 14.12 8.89 42.86 3.86
128 129 1.487231 CGTTTGTCGACCAGAAGCG 59.513 57.895 14.12 10.80 42.86 4.68
129 130 1.860078 GTTTGTCGACCAGAAGCGG 59.140 57.895 14.12 0.00 0.00 5.52
130 131 1.301401 TTTGTCGACCAGAAGCGGG 60.301 57.895 14.12 0.00 0.00 6.13
131 132 2.725203 TTTGTCGACCAGAAGCGGGG 62.725 60.000 14.12 0.00 0.00 5.73
135 136 4.821589 GACCAGAAGCGGGGCGAG 62.822 72.222 0.00 0.00 0.00 5.03
138 139 4.082523 CAGAAGCGGGGCGAGGAA 62.083 66.667 0.00 0.00 0.00 3.36
139 140 3.775654 AGAAGCGGGGCGAGGAAG 61.776 66.667 0.00 0.00 0.00 3.46
140 141 4.083862 GAAGCGGGGCGAGGAAGT 62.084 66.667 0.00 0.00 0.00 3.01
141 142 4.394712 AAGCGGGGCGAGGAAGTG 62.395 66.667 0.00 0.00 0.00 3.16
146 147 3.090532 GGGCGAGGAAGTGGGGAT 61.091 66.667 0.00 0.00 0.00 3.85
147 148 2.680370 GGGCGAGGAAGTGGGGATT 61.680 63.158 0.00 0.00 0.00 3.01
148 149 1.153147 GGCGAGGAAGTGGGGATTC 60.153 63.158 0.00 0.00 0.00 2.52
149 150 1.521681 GCGAGGAAGTGGGGATTCG 60.522 63.158 0.00 0.00 0.00 3.34
150 151 1.144057 CGAGGAAGTGGGGATTCGG 59.856 63.158 0.00 0.00 0.00 4.30
151 152 1.153147 GAGGAAGTGGGGATTCGGC 60.153 63.158 0.00 0.00 0.00 5.54
152 153 1.616628 AGGAAGTGGGGATTCGGCT 60.617 57.895 0.00 0.00 0.00 5.52
153 154 1.153147 GGAAGTGGGGATTCGGCTC 60.153 63.158 0.00 0.00 0.00 4.70
154 155 1.627297 GGAAGTGGGGATTCGGCTCT 61.627 60.000 0.00 0.00 0.00 4.09
155 156 0.462759 GAAGTGGGGATTCGGCTCTG 60.463 60.000 0.00 0.00 0.00 3.35
156 157 1.915078 AAGTGGGGATTCGGCTCTGG 61.915 60.000 0.00 0.00 0.00 3.86
157 158 2.040442 TGGGGATTCGGCTCTGGA 59.960 61.111 0.00 0.00 0.00 3.86
158 159 2.066393 TGGGGATTCGGCTCTGGAG 61.066 63.158 0.00 0.00 0.00 3.86
159 160 1.762460 GGGGATTCGGCTCTGGAGA 60.762 63.158 1.35 0.00 0.00 3.71
160 161 1.338136 GGGGATTCGGCTCTGGAGAA 61.338 60.000 1.35 0.00 0.00 2.87
161 162 0.105778 GGGATTCGGCTCTGGAGAAG 59.894 60.000 1.35 0.00 0.00 2.85
162 163 0.105778 GGATTCGGCTCTGGAGAAGG 59.894 60.000 1.35 0.00 0.00 3.46
163 164 1.115467 GATTCGGCTCTGGAGAAGGA 58.885 55.000 1.35 0.00 0.00 3.36
164 165 0.827368 ATTCGGCTCTGGAGAAGGAC 59.173 55.000 1.35 0.00 0.00 3.85
165 166 1.595993 TTCGGCTCTGGAGAAGGACG 61.596 60.000 1.35 0.00 0.00 4.79
166 167 2.896443 GGCTCTGGAGAAGGACGG 59.104 66.667 1.35 0.00 0.00 4.79
167 168 1.682684 GGCTCTGGAGAAGGACGGA 60.683 63.158 1.35 0.00 0.00 4.69
168 169 1.045911 GGCTCTGGAGAAGGACGGAT 61.046 60.000 1.35 0.00 0.00 4.18
169 170 0.387565 GCTCTGGAGAAGGACGGATC 59.612 60.000 1.35 0.00 0.00 3.36
170 171 1.036707 CTCTGGAGAAGGACGGATCC 58.963 60.000 0.00 0.00 46.69 3.36
181 182 2.822764 GGACGGATCCTTGTGTGATAC 58.177 52.381 10.75 0.00 42.45 2.24
182 183 2.167693 GGACGGATCCTTGTGTGATACA 59.832 50.000 10.75 0.00 42.45 2.29
183 184 3.448686 GACGGATCCTTGTGTGATACAG 58.551 50.000 10.75 0.00 41.10 2.74
184 185 2.205074 CGGATCCTTGTGTGATACAGC 58.795 52.381 10.75 0.00 41.10 4.40
185 186 2.418609 CGGATCCTTGTGTGATACAGCA 60.419 50.000 10.75 0.00 41.10 4.41
186 187 2.939103 GGATCCTTGTGTGATACAGCAC 59.061 50.000 3.84 0.00 41.10 4.40
187 188 2.078849 TCCTTGTGTGATACAGCACG 57.921 50.000 0.00 0.00 41.10 5.34
188 189 0.443869 CCTTGTGTGATACAGCACGC 59.556 55.000 4.29 4.29 46.57 5.34
190 191 4.162640 GTGTGATACAGCACGCGA 57.837 55.556 15.93 0.00 41.63 5.87
191 192 1.991430 GTGTGATACAGCACGCGAG 59.009 57.895 15.93 5.97 41.63 5.03
192 193 1.153842 TGTGATACAGCACGCGAGG 60.154 57.895 15.93 5.48 41.63 4.63
193 194 2.202743 TGATACAGCACGCGAGGC 60.203 61.111 15.93 16.84 0.00 4.70
194 195 2.202743 GATACAGCACGCGAGGCA 60.203 61.111 24.42 8.86 0.00 4.75
195 196 1.592669 GATACAGCACGCGAGGCAT 60.593 57.895 24.42 16.22 0.00 4.40
196 197 1.552348 GATACAGCACGCGAGGCATC 61.552 60.000 24.42 16.35 0.00 3.91
205 206 3.635204 CGAGGCATCGGATCTTGC 58.365 61.111 13.95 7.13 45.39 4.01
210 211 2.028130 GCATCGGATCTTGCCTTGG 58.972 57.895 0.00 0.00 32.66 3.61
211 212 0.749454 GCATCGGATCTTGCCTTGGT 60.749 55.000 0.00 0.00 32.66 3.67
212 213 1.755179 CATCGGATCTTGCCTTGGTT 58.245 50.000 0.00 0.00 0.00 3.67
213 214 2.094675 CATCGGATCTTGCCTTGGTTT 58.905 47.619 0.00 0.00 0.00 3.27
214 215 1.821216 TCGGATCTTGCCTTGGTTTC 58.179 50.000 0.00 0.00 0.00 2.78
215 216 0.447801 CGGATCTTGCCTTGGTTTCG 59.552 55.000 0.00 0.00 0.00 3.46
216 217 1.534729 GGATCTTGCCTTGGTTTCGT 58.465 50.000 0.00 0.00 0.00 3.85
217 218 1.468914 GGATCTTGCCTTGGTTTCGTC 59.531 52.381 0.00 0.00 0.00 4.20
218 219 2.151202 GATCTTGCCTTGGTTTCGTCA 58.849 47.619 0.00 0.00 0.00 4.35
219 220 2.045561 TCTTGCCTTGGTTTCGTCAA 57.954 45.000 0.00 0.00 0.00 3.18
220 221 2.582052 TCTTGCCTTGGTTTCGTCAAT 58.418 42.857 0.00 0.00 0.00 2.57
221 222 2.293122 TCTTGCCTTGGTTTCGTCAATG 59.707 45.455 0.00 0.00 0.00 2.82
222 223 0.958091 TGCCTTGGTTTCGTCAATGG 59.042 50.000 0.00 0.00 0.00 3.16
223 224 0.243636 GCCTTGGTTTCGTCAATGGG 59.756 55.000 0.00 0.00 0.00 4.00
224 225 0.243636 CCTTGGTTTCGTCAATGGGC 59.756 55.000 0.00 0.00 0.00 5.36
225 226 0.109781 CTTGGTTTCGTCAATGGGCG 60.110 55.000 0.00 0.00 0.00 6.13
226 227 0.535328 TTGGTTTCGTCAATGGGCGA 60.535 50.000 0.00 0.00 35.17 5.54
227 228 0.322098 TGGTTTCGTCAATGGGCGAT 60.322 50.000 0.00 0.00 36.97 4.58
228 229 0.377203 GGTTTCGTCAATGGGCGATC 59.623 55.000 0.00 0.00 36.97 3.69
229 230 0.377203 GTTTCGTCAATGGGCGATCC 59.623 55.000 0.00 0.00 36.97 3.36
230 231 1.087202 TTTCGTCAATGGGCGATCCG 61.087 55.000 0.00 0.00 38.76 4.18
231 232 1.950973 TTCGTCAATGGGCGATCCGA 61.951 55.000 0.00 0.00 38.76 4.55
232 233 1.300931 CGTCAATGGGCGATCCGAT 60.301 57.895 0.00 0.00 38.76 4.18
233 234 1.284982 CGTCAATGGGCGATCCGATC 61.285 60.000 0.00 0.00 38.76 3.69
234 235 0.034059 GTCAATGGGCGATCCGATCT 59.966 55.000 6.81 0.00 38.76 2.75
235 236 0.033920 TCAATGGGCGATCCGATCTG 59.966 55.000 6.81 2.04 38.76 2.90
236 237 0.033920 CAATGGGCGATCCGATCTGA 59.966 55.000 6.81 0.00 38.76 3.27
237 238 0.319728 AATGGGCGATCCGATCTGAG 59.680 55.000 6.81 0.00 38.76 3.35
238 239 2.048690 GGGCGATCCGATCTGAGC 60.049 66.667 6.81 2.94 0.00 4.26
239 240 2.730733 GGCGATCCGATCTGAGCA 59.269 61.111 6.81 0.00 0.00 4.26
240 241 1.068083 GGCGATCCGATCTGAGCAA 59.932 57.895 6.81 0.00 0.00 3.91
241 242 0.943359 GGCGATCCGATCTGAGCAAG 60.943 60.000 6.81 0.00 0.00 4.01
242 243 0.031314 GCGATCCGATCTGAGCAAGA 59.969 55.000 6.81 0.00 39.94 3.02
243 244 1.764851 CGATCCGATCTGAGCAAGAC 58.235 55.000 6.81 0.00 37.88 3.01
244 245 1.764851 GATCCGATCTGAGCAAGACG 58.235 55.000 0.75 0.00 37.88 4.18
245 246 1.335182 GATCCGATCTGAGCAAGACGA 59.665 52.381 0.75 1.37 37.88 4.20
246 247 1.173913 TCCGATCTGAGCAAGACGAA 58.826 50.000 0.00 0.00 37.88 3.85
247 248 1.135373 TCCGATCTGAGCAAGACGAAC 60.135 52.381 0.00 0.00 37.88 3.95
248 249 1.402852 CCGATCTGAGCAAGACGAACA 60.403 52.381 0.00 0.00 37.88 3.18
249 250 1.651138 CGATCTGAGCAAGACGAACAC 59.349 52.381 0.00 0.00 37.88 3.32
250 251 1.996191 GATCTGAGCAAGACGAACACC 59.004 52.381 0.00 0.00 37.88 4.16
251 252 0.750249 TCTGAGCAAGACGAACACCA 59.250 50.000 0.00 0.00 0.00 4.17
252 253 1.138069 TCTGAGCAAGACGAACACCAA 59.862 47.619 0.00 0.00 0.00 3.67
253 254 1.261619 CTGAGCAAGACGAACACCAAC 59.738 52.381 0.00 0.00 0.00 3.77
254 255 1.295792 GAGCAAGACGAACACCAACA 58.704 50.000 0.00 0.00 0.00 3.33
255 256 1.003866 GAGCAAGACGAACACCAACAC 60.004 52.381 0.00 0.00 0.00 3.32
256 257 0.315869 GCAAGACGAACACCAACACG 60.316 55.000 0.00 0.00 0.00 4.49
257 258 1.282817 CAAGACGAACACCAACACGA 58.717 50.000 0.00 0.00 0.00 4.35
258 259 1.661617 CAAGACGAACACCAACACGAA 59.338 47.619 0.00 0.00 0.00 3.85
259 260 1.283736 AGACGAACACCAACACGAAC 58.716 50.000 0.00 0.00 0.00 3.95
260 261 0.302589 GACGAACACCAACACGAACC 59.697 55.000 0.00 0.00 0.00 3.62
261 262 0.391395 ACGAACACCAACACGAACCA 60.391 50.000 0.00 0.00 0.00 3.67
262 263 0.727970 CGAACACCAACACGAACCAA 59.272 50.000 0.00 0.00 0.00 3.67
263 264 1.332375 CGAACACCAACACGAACCAAT 59.668 47.619 0.00 0.00 0.00 3.16
264 265 2.601266 CGAACACCAACACGAACCAATC 60.601 50.000 0.00 0.00 0.00 2.67
297 298 3.670377 GCGGCGGCCTGTTTTTCT 61.670 61.111 18.34 0.00 0.00 2.52
298 299 3.039134 CGGCGGCCTGTTTTTCTT 58.961 55.556 18.34 0.00 0.00 2.52
299 300 1.362355 CGGCGGCCTGTTTTTCTTT 59.638 52.632 18.34 0.00 0.00 2.52
300 301 0.249280 CGGCGGCCTGTTTTTCTTTT 60.249 50.000 18.34 0.00 0.00 2.27
301 302 1.804746 CGGCGGCCTGTTTTTCTTTTT 60.805 47.619 18.34 0.00 0.00 1.94
318 319 2.339728 TTTTAATCAAAGCGGCGGTG 57.660 45.000 14.17 0.08 0.00 4.94
319 320 1.240256 TTTAATCAAAGCGGCGGTGT 58.760 45.000 14.17 3.19 0.00 4.16
320 321 0.519519 TTAATCAAAGCGGCGGTGTG 59.480 50.000 22.56 22.56 0.00 3.82
321 322 1.302383 TAATCAAAGCGGCGGTGTGG 61.302 55.000 27.02 13.22 0.00 4.17
340 341 1.215647 CTTTGTAGAGGGCGCGTCT 59.784 57.895 11.94 14.58 33.11 4.18
341 342 0.802607 CTTTGTAGAGGGCGCGTCTC 60.803 60.000 11.94 16.51 30.95 3.36
342 343 2.221906 TTTGTAGAGGGCGCGTCTCC 62.222 60.000 21.70 15.09 30.95 3.71
343 344 2.829458 GTAGAGGGCGCGTCTCCT 60.829 66.667 21.70 18.83 35.82 3.69
344 345 2.044252 TAGAGGGCGCGTCTCCTT 60.044 61.111 21.70 6.77 32.74 3.36
345 346 1.681327 TAGAGGGCGCGTCTCCTTT 60.681 57.895 21.70 16.59 32.74 3.11
428 478 3.891366 ACTTCCCAGTCATTTTTCCACTG 59.109 43.478 0.00 0.00 37.81 3.66
500 570 3.855853 GGCTTCTCCCTCGCCCTC 61.856 72.222 0.00 0.00 37.86 4.30
502 572 2.364317 CTTCTCCCTCGCCCTCCA 60.364 66.667 0.00 0.00 0.00 3.86
518 588 1.152440 CCATCCTACCTCCCTCGCT 60.152 63.158 0.00 0.00 0.00 4.93
526 596 0.105453 ACCTCCCTCGCTACCATCAT 60.105 55.000 0.00 0.00 0.00 2.45
535 605 3.572642 TCGCTACCATCATCTTTCCCTA 58.427 45.455 0.00 0.00 0.00 3.53
642 741 3.470888 CCCCCTCCACCGCTACAG 61.471 72.222 0.00 0.00 0.00 2.74
643 742 4.162690 CCCCTCCACCGCTACAGC 62.163 72.222 0.00 0.00 37.78 4.40
644 743 3.077556 CCCTCCACCGCTACAGCT 61.078 66.667 0.00 0.00 39.32 4.24
645 744 2.496817 CCTCCACCGCTACAGCTC 59.503 66.667 0.00 0.00 39.32 4.09
646 745 2.055042 CCTCCACCGCTACAGCTCT 61.055 63.158 0.00 0.00 39.32 4.09
647 746 1.435515 CTCCACCGCTACAGCTCTC 59.564 63.158 0.00 0.00 39.32 3.20
648 747 2.010582 CTCCACCGCTACAGCTCTCC 62.011 65.000 0.00 0.00 39.32 3.71
649 748 2.103143 CACCGCTACAGCTCTCCG 59.897 66.667 0.00 0.00 39.32 4.63
650 749 3.827898 ACCGCTACAGCTCTCCGC 61.828 66.667 0.00 0.00 39.32 5.54
698 797 2.361610 CACCCAAATCAGGCCGCT 60.362 61.111 0.00 0.00 0.00 5.52
733 832 2.586792 GGATCTGCTTGCCGGACT 59.413 61.111 5.05 0.00 0.00 3.85
735 834 1.219124 GATCTGCTTGCCGGACTCA 59.781 57.895 5.05 0.00 0.00 3.41
736 835 1.078848 ATCTGCTTGCCGGACTCAC 60.079 57.895 5.05 0.00 0.00 3.51
746 845 2.125106 GGACTCACGGGATGCCAC 60.125 66.667 3.39 0.00 0.00 5.01
799 898 4.918201 CTCCGCCGGCCCATTCTC 62.918 72.222 23.46 0.00 0.00 2.87
805 904 2.203070 CGGCCCATTCTCCGGAAG 60.203 66.667 5.23 0.00 41.82 3.46
806 905 2.517166 GGCCCATTCTCCGGAAGC 60.517 66.667 5.23 1.53 34.70 3.86
807 906 2.592308 GCCCATTCTCCGGAAGCT 59.408 61.111 5.23 0.00 34.70 3.74
808 907 1.524849 GCCCATTCTCCGGAAGCTC 60.525 63.158 5.23 0.00 34.70 4.09
809 908 1.227380 CCCATTCTCCGGAAGCTCG 60.227 63.158 5.23 0.00 34.70 5.03
828 946 1.597461 GGACCCTTCTTCTCCGGTG 59.403 63.158 0.00 0.00 0.00 4.94
831 949 2.294078 CCCTTCTTCTCCGGTGGCT 61.294 63.158 0.00 0.00 0.00 4.75
855 973 2.753446 GGCTGCCTTTGCCTCCTC 60.753 66.667 12.43 0.00 46.38 3.71
917 1035 1.670406 GCCTGTCTCACCTGCACTG 60.670 63.158 0.00 0.00 0.00 3.66
958 1081 3.799035 CAGAAACGTTTGATCTGAACCG 58.201 45.455 20.10 0.00 42.48 4.44
1128 1251 2.030274 GTCCACTTACAACATTGGTGGC 60.030 50.000 6.65 5.83 44.79 5.01
1158 1281 1.373497 GATCTGCATCTACCCCGCG 60.373 63.158 0.00 0.00 0.00 6.46
1227 1350 0.827925 TGTTCCTCAGCGAGACCTGT 60.828 55.000 7.07 0.00 34.47 4.00
1293 1421 4.719369 AGCGTGCTTCGACCGTCC 62.719 66.667 6.11 0.00 42.86 4.79
1343 1471 2.289819 ACCGTTCATGGGTATCACGTTT 60.290 45.455 0.00 0.00 35.58 3.60
1392 1520 4.214332 AGTGAAGATTTTTCGCTTCCAGTC 59.786 41.667 0.00 0.00 39.73 3.51
1452 1580 8.552034 GGTTATCTCAGGAATGATTCTTTTACG 58.448 37.037 5.03 0.00 0.00 3.18
1460 1588 6.828785 AGGAATGATTCTTTTACGGTGCTATT 59.171 34.615 5.03 0.00 0.00 1.73
1482 1610 1.079819 CGTCACGGTGCTGAAGGAT 60.080 57.895 2.51 0.00 0.00 3.24
1523 1663 3.314693 TCCCAGGTAAAGAAGTGACTGT 58.685 45.455 0.00 0.00 0.00 3.55
1533 1673 2.061773 GAAGTGACTGTGTCATCACCG 58.938 52.381 3.65 0.00 44.63 4.94
1535 1675 1.895798 AGTGACTGTGTCATCACCGAT 59.104 47.619 3.65 0.00 44.63 4.18
1568 1708 1.079819 TTGCTGAGCTCCTGCGTAC 60.080 57.895 12.15 0.00 45.42 3.67
1669 1809 0.535335 TGTACTGATGGCCGAGTTCC 59.465 55.000 7.16 0.91 0.00 3.62
1696 1836 1.748493 ACATGAAGGAGACGAGCTCTC 59.252 52.381 12.85 8.50 44.52 3.20
1771 1911 2.164624 ACTTCATCTACACCGACTCTGC 59.835 50.000 0.00 0.00 0.00 4.26
1773 1913 1.745653 TCATCTACACCGACTCTGCTG 59.254 52.381 0.00 0.00 0.00 4.41
1774 1914 1.107114 ATCTACACCGACTCTGCTGG 58.893 55.000 0.00 0.00 0.00 4.85
1775 1915 0.037734 TCTACACCGACTCTGCTGGA 59.962 55.000 0.00 0.00 0.00 3.86
1776 1916 0.888619 CTACACCGACTCTGCTGGAA 59.111 55.000 0.00 0.00 0.00 3.53
1777 1917 1.478510 CTACACCGACTCTGCTGGAAT 59.521 52.381 0.00 0.00 0.00 3.01
1830 1971 1.133790 GGCTCAGCATTTACTTGCAGG 59.866 52.381 0.00 0.00 45.23 4.85
1844 1985 3.007940 ACTTGCAGGTGCTGACAAGTATA 59.992 43.478 0.00 0.00 46.17 1.47
2038 2179 4.532126 ACGGATGGATATAAGCATCTGGAA 59.468 41.667 0.00 0.00 35.40 3.53
2074 2215 2.884639 GGTGTTGCCTGAGCTTCTTAAA 59.115 45.455 0.00 0.00 40.80 1.52
2098 2241 0.035458 CGGGGCAGAAAGAGTTGACT 59.965 55.000 0.00 0.00 0.00 3.41
2102 2245 1.876156 GGCAGAAAGAGTTGACTGGTG 59.124 52.381 0.00 0.00 0.00 4.17
2106 2249 2.135933 GAAAGAGTTGACTGGTGACCG 58.864 52.381 0.00 0.00 0.00 4.79
2132 2279 4.291249 AGGGTGCTAAAGGTCCAAGATTTA 59.709 41.667 0.00 0.00 0.00 1.40
2136 2283 7.258441 GGTGCTAAAGGTCCAAGATTTAAATC 58.742 38.462 18.70 18.70 35.64 2.17
2139 2286 7.669722 TGCTAAAGGTCCAAGATTTAAATCTGT 59.330 33.333 27.25 16.12 44.67 3.41
2173 2321 0.469494 ATGGTCGCCATGCATCTGTA 59.531 50.000 10.09 0.00 43.39 2.74
2179 2327 2.693074 TCGCCATGCATCTGTAGTCTAA 59.307 45.455 0.00 0.00 0.00 2.10
2187 2336 7.928167 CCATGCATCTGTAGTCTAATAGAAACA 59.072 37.037 0.00 6.57 0.00 2.83
2231 2383 6.978343 TTGGAAAACTTATGTCCATCTACG 57.022 37.500 0.00 0.00 41.05 3.51
2245 2398 5.859114 GTCCATCTACGTATGTTATGAGCAG 59.141 44.000 0.00 0.00 0.00 4.24
2270 2423 1.830279 TGCTTGCATTTCCTCTCCAG 58.170 50.000 0.00 0.00 0.00 3.86
2302 2455 9.474313 TCTAATTTAGTGCTAAATGGTCCAAAT 57.526 29.630 15.39 3.35 42.91 2.32
2318 2471 4.192429 CCAAATTTTGGTAGCCCTCTTG 57.808 45.455 18.34 0.00 45.93 3.02
2332 2486 2.551721 CCCTCTTGTTCTGTGCTGTCAT 60.552 50.000 0.00 0.00 0.00 3.06
2346 2500 5.388408 TGCTGTCATTATTTGCACAATGA 57.612 34.783 11.61 11.61 38.50 2.57
2347 2501 5.968254 TGCTGTCATTATTTGCACAATGAT 58.032 33.333 16.41 6.85 41.73 2.45
2349 2503 5.276678 GCTGTCATTATTTGCACAATGATGC 60.277 40.000 16.41 17.63 41.73 3.91
2382 2536 1.036707 TGTGCCCAGCTTGGTAAAAC 58.963 50.000 5.61 0.60 35.17 2.43
2387 2541 2.102420 GCCCAGCTTGGTAAAACTTTGT 59.898 45.455 5.61 0.00 35.17 2.83
2394 2548 7.014702 CAGCTTGGTAAAACTTTGTTGTTTTG 58.985 34.615 13.47 0.99 45.92 2.44
2410 2593 6.700960 TGTTGTTTTGGTGATGTCATGATTTC 59.299 34.615 0.00 0.00 0.00 2.17
2422 2605 4.005650 GTCATGATTTCCTCAGTTGCAGA 58.994 43.478 0.00 0.00 37.28 4.26
2442 2630 1.241165 CTGCAGCAACACAATCCTGA 58.759 50.000 0.00 0.00 0.00 3.86
2448 2636 4.321156 GCAGCAACACAATCCTGATGTTTA 60.321 41.667 0.00 0.00 34.36 2.01
2475 2663 3.818773 ACCTTGTAGTATTGTTGTGTGCC 59.181 43.478 0.00 0.00 0.00 5.01
2477 2665 1.801771 TGTAGTATTGTTGTGTGCCGC 59.198 47.619 0.00 0.00 0.00 6.53
2480 2668 0.236187 GTATTGTTGTGTGCCGCGAA 59.764 50.000 8.23 0.00 0.00 4.70
2496 2684 3.603770 CCGCGAATTCTTTTGAACACATC 59.396 43.478 8.23 0.00 41.77 3.06
2506 2694 4.730600 TTTGAACACATCGTCACATCAG 57.269 40.909 0.00 0.00 0.00 2.90
2519 2707 3.002791 TCACATCAGATTTCGGAACAGC 58.997 45.455 0.00 0.00 0.00 4.40
2520 2708 2.743664 CACATCAGATTTCGGAACAGCA 59.256 45.455 0.00 0.00 0.00 4.41
2521 2709 2.744202 ACATCAGATTTCGGAACAGCAC 59.256 45.455 0.00 0.00 0.00 4.40
2542 2730 5.178797 CACCAGGAAACTAAGTACCATCTG 58.821 45.833 0.00 0.00 40.21 2.90
2559 2747 9.431887 GTACCATCTGATTGTCTTAGTTACAAA 57.568 33.333 0.00 0.00 40.05 2.83
2580 2768 2.174854 AGTAAGGGGCTTTCTGTGTTGT 59.825 45.455 0.00 0.00 0.00 3.32
2585 2773 0.881796 GGCTTTCTGTGTTGTAGGCC 59.118 55.000 0.00 0.00 0.00 5.19
2588 2776 2.558359 GCTTTCTGTGTTGTAGGCCAAT 59.442 45.455 5.01 0.00 35.02 3.16
2590 2778 4.217550 GCTTTCTGTGTTGTAGGCCAATAA 59.782 41.667 5.01 0.00 35.02 1.40
2621 2809 3.135712 TGAACCAGCCTAGTGTTCTTGAA 59.864 43.478 0.00 0.00 39.24 2.69
2622 2810 3.857157 ACCAGCCTAGTGTTCTTGAAA 57.143 42.857 0.00 0.00 0.00 2.69
2636 2824 0.934496 TTGAAACTGTCTTGGCGACG 59.066 50.000 0.00 0.00 45.87 5.12
2642 2830 4.452733 GTCTTGGCGACGGAGGGG 62.453 72.222 0.00 0.00 32.04 4.79
2644 2832 3.072468 CTTGGCGACGGAGGGGTA 61.072 66.667 0.00 0.00 0.00 3.69
2645 2833 2.364579 TTGGCGACGGAGGGGTAT 60.365 61.111 0.00 0.00 0.00 2.73
2646 2834 1.076118 TTGGCGACGGAGGGGTATA 60.076 57.895 0.00 0.00 0.00 1.47
2647 2835 0.470456 TTGGCGACGGAGGGGTATAT 60.470 55.000 0.00 0.00 0.00 0.86
2648 2836 1.183030 TGGCGACGGAGGGGTATATG 61.183 60.000 0.00 0.00 0.00 1.78
2649 2837 1.080025 GCGACGGAGGGGTATATGC 60.080 63.158 0.00 0.00 0.00 3.14
2650 2838 1.812686 GCGACGGAGGGGTATATGCA 61.813 60.000 0.00 0.00 0.00 3.96
2651 2839 0.895530 CGACGGAGGGGTATATGCAT 59.104 55.000 3.79 3.79 0.00 3.96
2652 2840 1.135083 CGACGGAGGGGTATATGCATC 60.135 57.143 0.19 0.00 0.00 3.91
2653 2841 2.180276 GACGGAGGGGTATATGCATCT 58.820 52.381 0.19 0.00 0.00 2.90
2654 2842 1.902508 ACGGAGGGGTATATGCATCTG 59.097 52.381 0.19 0.00 0.00 2.90
2655 2843 2.179427 CGGAGGGGTATATGCATCTGA 58.821 52.381 0.19 0.00 0.00 3.27
2656 2844 2.093973 CGGAGGGGTATATGCATCTGAC 60.094 54.545 0.19 0.00 0.00 3.51
2657 2845 2.906389 GGAGGGGTATATGCATCTGACA 59.094 50.000 0.19 0.00 0.00 3.58
2658 2846 3.055530 GGAGGGGTATATGCATCTGACAG 60.056 52.174 0.19 0.00 0.00 3.51
2659 2847 2.304180 AGGGGTATATGCATCTGACAGC 59.696 50.000 0.19 0.00 0.00 4.40
2660 2848 2.038952 GGGGTATATGCATCTGACAGCA 59.961 50.000 0.19 8.76 45.92 4.41
2661 2849 3.496692 GGGGTATATGCATCTGACAGCAA 60.497 47.826 0.19 2.30 44.88 3.91
2662 2850 3.750130 GGGTATATGCATCTGACAGCAAG 59.250 47.826 0.19 0.00 44.88 4.01
2663 2851 3.188048 GGTATATGCATCTGACAGCAAGC 59.812 47.826 0.19 2.25 44.88 4.01
2664 2852 2.704464 TATGCATCTGACAGCAAGCT 57.296 45.000 0.19 0.00 44.88 3.74
2665 2853 2.704464 ATGCATCTGACAGCAAGCTA 57.296 45.000 10.15 3.24 44.88 3.32
2666 2854 1.730501 TGCATCTGACAGCAAGCTAC 58.269 50.000 12.59 0.00 37.90 3.58
2667 2855 1.012841 GCATCTGACAGCAAGCTACC 58.987 55.000 0.00 0.00 0.00 3.18
2668 2856 1.406614 GCATCTGACAGCAAGCTACCT 60.407 52.381 0.00 0.00 0.00 3.08
2672 2860 2.368548 TCTGACAGCAAGCTACCTTTCA 59.631 45.455 0.00 0.00 0.00 2.69
2700 2888 0.811915 TGACCTTCTCTAGTCTGCGC 59.188 55.000 0.00 0.00 34.02 6.09
2707 2895 2.202623 CTAGTCTGCGCGTGGGAC 60.203 66.667 8.43 13.50 0.00 4.46
2708 2896 2.675423 TAGTCTGCGCGTGGGACT 60.675 61.111 24.73 24.73 42.13 3.85
2709 2897 2.214181 CTAGTCTGCGCGTGGGACTT 62.214 60.000 25.83 15.28 40.29 3.01
2710 2898 2.486636 TAGTCTGCGCGTGGGACTTG 62.487 60.000 25.83 4.05 40.29 3.16
2711 2899 3.611674 TCTGCGCGTGGGACTTGA 61.612 61.111 8.43 0.00 0.00 3.02
2712 2900 2.434884 CTGCGCGTGGGACTTGAT 60.435 61.111 8.43 0.00 0.00 2.57
2741 2957 8.288208 CCAAAATATGATGTTGCATAGTCTCTC 58.712 37.037 0.00 0.00 34.50 3.20
2745 2961 6.922247 ATGATGTTGCATAGTCTCTCTTTG 57.078 37.500 0.00 0.00 0.00 2.77
2760 2976 6.688813 GTCTCTCTTTGTGTTTGTCATGTTTC 59.311 38.462 0.00 0.00 0.00 2.78
2761 2977 5.890334 TCTCTTTGTGTTTGTCATGTTTCC 58.110 37.500 0.00 0.00 0.00 3.13
2768 2984 5.825151 TGTGTTTGTCATGTTTCCATGTCTA 59.175 36.000 2.91 0.00 46.99 2.59
2773 2989 8.564574 GTTTGTCATGTTTCCATGTCTAGTTAA 58.435 33.333 2.91 0.00 46.99 2.01
2774 2990 7.667043 TGTCATGTTTCCATGTCTAGTTAAC 57.333 36.000 0.00 0.00 46.99 2.01
2775 2991 7.450074 TGTCATGTTTCCATGTCTAGTTAACT 58.550 34.615 13.68 13.68 46.99 2.24
2776 2992 7.936847 TGTCATGTTTCCATGTCTAGTTAACTT 59.063 33.333 14.49 0.00 46.99 2.66
2777 2993 9.431887 GTCATGTTTCCATGTCTAGTTAACTTA 57.568 33.333 14.49 0.00 46.99 2.24
2780 2996 9.959721 ATGTTTCCATGTCTAGTTAACTTATGT 57.040 29.630 14.49 0.00 0.00 2.29
2781 2997 9.787435 TGTTTCCATGTCTAGTTAACTTATGTT 57.213 29.630 14.49 0.00 39.98 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.321564 CTCCTTCATCGCCAACCACA 60.322 55.000 0.00 0.00 0.00 4.17
4 5 2.098117 CCAATTCTCCTTCATCGCCAAC 59.902 50.000 0.00 0.00 0.00 3.77
5 6 2.368439 CCAATTCTCCTTCATCGCCAA 58.632 47.619 0.00 0.00 0.00 4.52
6 7 2.018644 GCCAATTCTCCTTCATCGCCA 61.019 52.381 0.00 0.00 0.00 5.69
7 8 0.665298 GCCAATTCTCCTTCATCGCC 59.335 55.000 0.00 0.00 0.00 5.54
8 9 1.064654 GTGCCAATTCTCCTTCATCGC 59.935 52.381 0.00 0.00 0.00 4.58
9 10 1.672881 GGTGCCAATTCTCCTTCATCG 59.327 52.381 0.00 0.00 0.00 3.84
10 11 2.424956 GTGGTGCCAATTCTCCTTCATC 59.575 50.000 0.00 0.00 0.00 2.92
11 12 2.450476 GTGGTGCCAATTCTCCTTCAT 58.550 47.619 0.00 0.00 0.00 2.57
12 13 1.547675 GGTGGTGCCAATTCTCCTTCA 60.548 52.381 0.00 0.00 37.17 3.02
13 14 1.177401 GGTGGTGCCAATTCTCCTTC 58.823 55.000 0.00 0.00 37.17 3.46
14 15 0.609131 CGGTGGTGCCAATTCTCCTT 60.609 55.000 0.00 0.00 36.97 3.36
15 16 1.002134 CGGTGGTGCCAATTCTCCT 60.002 57.895 0.00 0.00 36.97 3.69
16 17 2.046285 CCGGTGGTGCCAATTCTCC 61.046 63.158 0.00 0.00 36.97 3.71
17 18 0.893727 AACCGGTGGTGCCAATTCTC 60.894 55.000 8.52 0.00 35.34 2.87
18 19 1.152830 AACCGGTGGTGCCAATTCT 59.847 52.632 8.52 0.00 35.34 2.40
19 20 1.288752 CAACCGGTGGTGCCAATTC 59.711 57.895 8.52 0.00 35.34 2.17
20 21 2.206536 CCAACCGGTGGTGCCAATT 61.207 57.895 8.52 0.00 43.20 2.32
21 22 2.600173 CCAACCGGTGGTGCCAAT 60.600 61.111 8.52 0.00 43.20 3.16
50 51 4.586235 ACCACCACCACCAGCAGC 62.586 66.667 0.00 0.00 0.00 5.25
51 52 2.595463 CACCACCACCACCAGCAG 60.595 66.667 0.00 0.00 0.00 4.24
52 53 4.202574 CCACCACCACCACCAGCA 62.203 66.667 0.00 0.00 0.00 4.41
53 54 2.748058 CTACCACCACCACCACCAGC 62.748 65.000 0.00 0.00 0.00 4.85
54 55 1.374947 CTACCACCACCACCACCAG 59.625 63.158 0.00 0.00 0.00 4.00
55 56 2.150719 CCTACCACCACCACCACCA 61.151 63.158 0.00 0.00 0.00 4.17
56 57 2.754375 CCTACCACCACCACCACC 59.246 66.667 0.00 0.00 0.00 4.61
57 58 2.033602 GCCTACCACCACCACCAC 59.966 66.667 0.00 0.00 0.00 4.16
58 59 3.632080 CGCCTACCACCACCACCA 61.632 66.667 0.00 0.00 0.00 4.17
59 60 1.829523 TAACGCCTACCACCACCACC 61.830 60.000 0.00 0.00 0.00 4.61
60 61 0.035176 TTAACGCCTACCACCACCAC 59.965 55.000 0.00 0.00 0.00 4.16
61 62 0.985760 ATTAACGCCTACCACCACCA 59.014 50.000 0.00 0.00 0.00 4.17
62 63 1.375551 CATTAACGCCTACCACCACC 58.624 55.000 0.00 0.00 0.00 4.61
63 64 1.375551 CCATTAACGCCTACCACCAC 58.624 55.000 0.00 0.00 0.00 4.16
64 65 0.393267 GCCATTAACGCCTACCACCA 60.393 55.000 0.00 0.00 0.00 4.17
65 66 1.433837 CGCCATTAACGCCTACCACC 61.434 60.000 0.00 0.00 0.00 4.61
66 67 0.741927 ACGCCATTAACGCCTACCAC 60.742 55.000 0.00 0.00 0.00 4.16
67 68 0.741574 CACGCCATTAACGCCTACCA 60.742 55.000 0.00 0.00 0.00 3.25
68 69 1.433837 CCACGCCATTAACGCCTACC 61.434 60.000 0.00 0.00 0.00 3.18
69 70 2.011453 CCACGCCATTAACGCCTAC 58.989 57.895 0.00 0.00 0.00 3.18
70 71 1.816259 GCCACGCCATTAACGCCTA 60.816 57.895 0.00 0.00 0.00 3.93
71 72 3.131478 GCCACGCCATTAACGCCT 61.131 61.111 0.00 0.00 0.00 5.52
72 73 4.530325 CGCCACGCCATTAACGCC 62.530 66.667 0.00 0.00 0.00 5.68
73 74 3.711997 GACGCCACGCCATTAACGC 62.712 63.158 0.00 0.00 0.00 4.84
74 75 2.384309 TGACGCCACGCCATTAACG 61.384 57.895 0.00 0.00 0.00 3.18
75 76 1.133869 GTGACGCCACGCCATTAAC 59.866 57.895 0.00 0.00 33.10 2.01
76 77 2.036006 GGTGACGCCACGCCATTAA 61.036 57.895 0.00 0.00 44.09 1.40
77 78 2.435234 GGTGACGCCACGCCATTA 60.435 61.111 0.00 0.00 44.09 1.90
78 79 4.634703 TGGTGACGCCACGCCATT 62.635 61.111 2.83 0.00 44.09 3.16
86 87 2.046892 ACTGCTCATGGTGACGCC 60.047 61.111 0.00 0.00 37.90 5.68
87 88 2.447887 CGACTGCTCATGGTGACGC 61.448 63.158 0.00 0.00 0.00 5.19
88 89 2.447887 GCGACTGCTCATGGTGACG 61.448 63.158 0.00 0.00 38.39 4.35
89 90 3.479370 GCGACTGCTCATGGTGAC 58.521 61.111 0.00 0.00 38.39 3.67
99 100 3.579626 GACAAACGCCAGCGACTGC 62.580 63.158 20.32 7.66 42.83 4.40
100 101 2.551270 GACAAACGCCAGCGACTG 59.449 61.111 20.32 16.32 42.83 3.51
101 102 3.036084 CGACAAACGCCAGCGACT 61.036 61.111 20.32 2.09 42.83 4.18
102 103 3.033764 TCGACAAACGCCAGCGAC 61.034 61.111 20.32 3.84 42.83 5.19
103 104 3.033764 GTCGACAAACGCCAGCGA 61.034 61.111 20.32 0.00 42.83 4.93
104 105 4.072088 GGTCGACAAACGCCAGCG 62.072 66.667 18.91 11.05 46.03 5.18
105 106 2.970324 TGGTCGACAAACGCCAGC 60.970 61.111 18.91 0.00 40.84 4.85
107 108 0.878523 CTTCTGGTCGACAAACGCCA 60.879 55.000 18.91 3.77 42.38 5.69
108 109 1.860078 CTTCTGGTCGACAAACGCC 59.140 57.895 18.91 0.00 42.26 5.68
109 110 1.204312 GCTTCTGGTCGACAAACGC 59.796 57.895 18.91 8.96 42.26 4.84
110 111 1.487231 CGCTTCTGGTCGACAAACG 59.513 57.895 18.91 6.70 44.09 3.60
111 112 1.566018 CCCGCTTCTGGTCGACAAAC 61.566 60.000 18.91 0.00 0.00 2.93
112 113 1.301401 CCCGCTTCTGGTCGACAAA 60.301 57.895 18.91 7.45 0.00 2.83
113 114 2.342279 CCCGCTTCTGGTCGACAA 59.658 61.111 18.91 4.84 0.00 3.18
114 115 3.691342 CCCCGCTTCTGGTCGACA 61.691 66.667 18.91 2.63 0.00 4.35
118 119 4.821589 CTCGCCCCGCTTCTGGTC 62.822 72.222 0.00 0.00 0.00 4.02
121 122 4.082523 TTCCTCGCCCCGCTTCTG 62.083 66.667 0.00 0.00 0.00 3.02
122 123 3.775654 CTTCCTCGCCCCGCTTCT 61.776 66.667 0.00 0.00 0.00 2.85
123 124 4.083862 ACTTCCTCGCCCCGCTTC 62.084 66.667 0.00 0.00 0.00 3.86
124 125 4.394712 CACTTCCTCGCCCCGCTT 62.395 66.667 0.00 0.00 0.00 4.68
129 130 2.610532 GAATCCCCACTTCCTCGCCC 62.611 65.000 0.00 0.00 0.00 6.13
130 131 1.153147 GAATCCCCACTTCCTCGCC 60.153 63.158 0.00 0.00 0.00 5.54
131 132 1.521681 CGAATCCCCACTTCCTCGC 60.522 63.158 0.00 0.00 0.00 5.03
132 133 1.144057 CCGAATCCCCACTTCCTCG 59.856 63.158 0.00 0.00 0.00 4.63
133 134 1.153147 GCCGAATCCCCACTTCCTC 60.153 63.158 0.00 0.00 0.00 3.71
134 135 1.616628 AGCCGAATCCCCACTTCCT 60.617 57.895 0.00 0.00 0.00 3.36
135 136 1.153147 GAGCCGAATCCCCACTTCC 60.153 63.158 0.00 0.00 0.00 3.46
136 137 0.462759 CAGAGCCGAATCCCCACTTC 60.463 60.000 0.00 0.00 0.00 3.01
137 138 1.604378 CAGAGCCGAATCCCCACTT 59.396 57.895 0.00 0.00 0.00 3.16
138 139 2.370445 CCAGAGCCGAATCCCCACT 61.370 63.158 0.00 0.00 0.00 4.00
139 140 2.190578 CCAGAGCCGAATCCCCAC 59.809 66.667 0.00 0.00 0.00 4.61
140 141 2.040442 TCCAGAGCCGAATCCCCA 59.960 61.111 0.00 0.00 0.00 4.96
141 142 1.338136 TTCTCCAGAGCCGAATCCCC 61.338 60.000 0.00 0.00 0.00 4.81
142 143 0.105778 CTTCTCCAGAGCCGAATCCC 59.894 60.000 0.00 0.00 0.00 3.85
143 144 0.105778 CCTTCTCCAGAGCCGAATCC 59.894 60.000 0.00 0.00 0.00 3.01
144 145 1.115467 TCCTTCTCCAGAGCCGAATC 58.885 55.000 0.00 0.00 0.00 2.52
145 146 0.827368 GTCCTTCTCCAGAGCCGAAT 59.173 55.000 0.00 0.00 0.00 3.34
146 147 1.595993 CGTCCTTCTCCAGAGCCGAA 61.596 60.000 0.00 0.00 0.00 4.30
147 148 2.046864 CGTCCTTCTCCAGAGCCGA 61.047 63.158 0.00 0.00 0.00 5.54
148 149 2.492090 CGTCCTTCTCCAGAGCCG 59.508 66.667 0.00 0.00 0.00 5.52
149 150 1.045911 ATCCGTCCTTCTCCAGAGCC 61.046 60.000 0.00 0.00 0.00 4.70
150 151 0.387565 GATCCGTCCTTCTCCAGAGC 59.612 60.000 0.00 0.00 0.00 4.09
151 152 1.036707 GGATCCGTCCTTCTCCAGAG 58.963 60.000 0.00 0.00 41.60 3.35
152 153 3.209091 GGATCCGTCCTTCTCCAGA 57.791 57.895 0.00 0.00 41.60 3.86
161 162 2.167693 TGTATCACACAAGGATCCGTCC 59.832 50.000 5.98 0.00 37.18 4.79
162 163 3.448686 CTGTATCACACAAGGATCCGTC 58.551 50.000 5.98 0.00 36.48 4.79
163 164 2.418746 GCTGTATCACACAAGGATCCGT 60.419 50.000 5.98 0.00 36.48 4.69
164 165 2.205074 GCTGTATCACACAAGGATCCG 58.795 52.381 5.98 0.00 36.48 4.18
165 166 2.939103 GTGCTGTATCACACAAGGATCC 59.061 50.000 2.48 2.48 36.48 3.36
166 167 2.604914 CGTGCTGTATCACACAAGGATC 59.395 50.000 0.00 0.00 36.48 3.36
167 168 2.621338 CGTGCTGTATCACACAAGGAT 58.379 47.619 0.00 0.00 36.48 3.24
168 169 1.939381 GCGTGCTGTATCACACAAGGA 60.939 52.381 0.00 0.00 36.48 3.36
169 170 0.443869 GCGTGCTGTATCACACAAGG 59.556 55.000 0.00 0.00 36.48 3.61
170 171 0.093535 CGCGTGCTGTATCACACAAG 59.906 55.000 0.00 0.00 36.48 3.16
171 172 0.319125 TCGCGTGCTGTATCACACAA 60.319 50.000 5.77 0.00 36.48 3.33
172 173 0.732538 CTCGCGTGCTGTATCACACA 60.733 55.000 5.77 0.00 36.57 3.72
173 174 1.413767 CCTCGCGTGCTGTATCACAC 61.414 60.000 5.77 0.00 36.80 3.82
174 175 1.153842 CCTCGCGTGCTGTATCACA 60.154 57.895 5.77 0.00 36.80 3.58
175 176 2.517450 GCCTCGCGTGCTGTATCAC 61.517 63.158 5.77 0.00 0.00 3.06
176 177 2.202743 GCCTCGCGTGCTGTATCA 60.203 61.111 5.77 0.00 0.00 2.15
177 178 1.552348 GATGCCTCGCGTGCTGTATC 61.552 60.000 20.44 13.07 0.00 2.24
178 179 1.592669 GATGCCTCGCGTGCTGTAT 60.593 57.895 20.44 8.99 0.00 2.29
179 180 2.202743 GATGCCTCGCGTGCTGTA 60.203 61.111 20.44 5.00 0.00 2.74
184 185 2.960957 AAGATCCGATGCCTCGCGTG 62.961 60.000 5.77 2.75 43.66 5.34
185 186 2.786495 AAGATCCGATGCCTCGCGT 61.786 57.895 5.77 0.00 43.66 6.01
186 187 2.028190 AAGATCCGATGCCTCGCG 59.972 61.111 5.81 0.00 43.66 5.87
187 188 2.602322 GCAAGATCCGATGCCTCGC 61.602 63.158 5.81 0.00 43.66 5.03
188 189 3.635204 GCAAGATCCGATGCCTCG 58.365 61.111 4.21 4.21 44.62 4.63
192 193 0.749454 ACCAAGGCAAGATCCGATGC 60.749 55.000 7.10 7.10 41.82 3.91
193 194 1.755179 AACCAAGGCAAGATCCGATG 58.245 50.000 0.00 0.00 0.00 3.84
194 195 2.369394 GAAACCAAGGCAAGATCCGAT 58.631 47.619 0.00 0.00 0.00 4.18
195 196 1.821216 GAAACCAAGGCAAGATCCGA 58.179 50.000 0.00 0.00 0.00 4.55
196 197 0.447801 CGAAACCAAGGCAAGATCCG 59.552 55.000 0.00 0.00 0.00 4.18
197 198 1.468914 GACGAAACCAAGGCAAGATCC 59.531 52.381 0.00 0.00 0.00 3.36
198 199 2.151202 TGACGAAACCAAGGCAAGATC 58.849 47.619 0.00 0.00 0.00 2.75
199 200 2.270352 TGACGAAACCAAGGCAAGAT 57.730 45.000 0.00 0.00 0.00 2.40
200 201 2.045561 TTGACGAAACCAAGGCAAGA 57.954 45.000 0.00 0.00 30.87 3.02
201 202 2.607771 CCATTGACGAAACCAAGGCAAG 60.608 50.000 0.00 0.00 38.94 4.01
202 203 1.339610 CCATTGACGAAACCAAGGCAA 59.660 47.619 0.00 0.00 39.98 4.52
203 204 0.958091 CCATTGACGAAACCAAGGCA 59.042 50.000 0.00 0.00 0.00 4.75
204 205 0.243636 CCCATTGACGAAACCAAGGC 59.756 55.000 0.00 0.00 0.00 4.35
205 206 0.243636 GCCCATTGACGAAACCAAGG 59.756 55.000 0.00 0.00 0.00 3.61
206 207 0.109781 CGCCCATTGACGAAACCAAG 60.110 55.000 0.00 0.00 0.00 3.61
207 208 0.535328 TCGCCCATTGACGAAACCAA 60.535 50.000 0.00 0.00 34.93 3.67
208 209 0.322098 ATCGCCCATTGACGAAACCA 60.322 50.000 5.96 0.00 42.31 3.67
209 210 0.377203 GATCGCCCATTGACGAAACC 59.623 55.000 5.96 0.00 42.31 3.27
210 211 0.377203 GGATCGCCCATTGACGAAAC 59.623 55.000 5.96 4.37 42.31 2.78
211 212 1.087202 CGGATCGCCCATTGACGAAA 61.087 55.000 5.96 0.00 42.31 3.46
212 213 1.520564 CGGATCGCCCATTGACGAA 60.521 57.895 5.96 0.00 42.31 3.85
213 214 1.744320 ATCGGATCGCCCATTGACGA 61.744 55.000 4.58 4.58 43.33 4.20
214 215 1.284982 GATCGGATCGCCCATTGACG 61.285 60.000 1.62 0.00 34.14 4.35
215 216 0.034059 AGATCGGATCGCCCATTGAC 59.966 55.000 12.08 0.00 34.14 3.18
216 217 0.033920 CAGATCGGATCGCCCATTGA 59.966 55.000 12.08 0.00 34.14 2.57
217 218 0.033920 TCAGATCGGATCGCCCATTG 59.966 55.000 12.08 4.59 34.14 2.82
218 219 0.319728 CTCAGATCGGATCGCCCATT 59.680 55.000 12.08 0.00 34.14 3.16
219 220 1.970639 CTCAGATCGGATCGCCCAT 59.029 57.895 12.08 0.00 34.14 4.00
220 221 2.861101 GCTCAGATCGGATCGCCCA 61.861 63.158 12.08 0.00 34.14 5.36
221 222 2.048690 GCTCAGATCGGATCGCCC 60.049 66.667 12.08 0.00 0.00 6.13
222 223 0.943359 CTTGCTCAGATCGGATCGCC 60.943 60.000 12.08 3.45 0.00 5.54
223 224 0.031314 TCTTGCTCAGATCGGATCGC 59.969 55.000 12.08 10.25 0.00 4.58
224 225 1.764851 GTCTTGCTCAGATCGGATCG 58.235 55.000 12.08 7.72 32.60 3.69
225 226 1.335182 TCGTCTTGCTCAGATCGGATC 59.665 52.381 10.02 10.02 32.60 3.36
226 227 1.393603 TCGTCTTGCTCAGATCGGAT 58.606 50.000 0.00 0.00 32.60 4.18
227 228 1.135373 GTTCGTCTTGCTCAGATCGGA 60.135 52.381 0.00 0.00 32.60 4.55
228 229 1.272781 GTTCGTCTTGCTCAGATCGG 58.727 55.000 0.00 0.00 32.60 4.18
229 230 1.651138 GTGTTCGTCTTGCTCAGATCG 59.349 52.381 0.00 0.00 32.60 3.69
230 231 1.996191 GGTGTTCGTCTTGCTCAGATC 59.004 52.381 0.00 0.00 32.60 2.75
231 232 1.344438 TGGTGTTCGTCTTGCTCAGAT 59.656 47.619 0.00 0.00 32.60 2.90
232 233 0.750249 TGGTGTTCGTCTTGCTCAGA 59.250 50.000 0.00 0.00 0.00 3.27
233 234 1.261619 GTTGGTGTTCGTCTTGCTCAG 59.738 52.381 0.00 0.00 0.00 3.35
234 235 1.295792 GTTGGTGTTCGTCTTGCTCA 58.704 50.000 0.00 0.00 0.00 4.26
235 236 1.003866 GTGTTGGTGTTCGTCTTGCTC 60.004 52.381 0.00 0.00 0.00 4.26
236 237 1.014352 GTGTTGGTGTTCGTCTTGCT 58.986 50.000 0.00 0.00 0.00 3.91
237 238 0.315869 CGTGTTGGTGTTCGTCTTGC 60.316 55.000 0.00 0.00 0.00 4.01
238 239 1.282817 TCGTGTTGGTGTTCGTCTTG 58.717 50.000 0.00 0.00 0.00 3.02
239 240 1.662122 GTTCGTGTTGGTGTTCGTCTT 59.338 47.619 0.00 0.00 0.00 3.01
240 241 1.283736 GTTCGTGTTGGTGTTCGTCT 58.716 50.000 0.00 0.00 0.00 4.18
241 242 0.302589 GGTTCGTGTTGGTGTTCGTC 59.697 55.000 0.00 0.00 0.00 4.20
242 243 0.391395 TGGTTCGTGTTGGTGTTCGT 60.391 50.000 0.00 0.00 0.00 3.85
243 244 0.727970 TTGGTTCGTGTTGGTGTTCG 59.272 50.000 0.00 0.00 0.00 3.95
244 245 2.601266 CGATTGGTTCGTGTTGGTGTTC 60.601 50.000 0.00 0.00 43.01 3.18
245 246 1.332375 CGATTGGTTCGTGTTGGTGTT 59.668 47.619 0.00 0.00 43.01 3.32
246 247 0.941542 CGATTGGTTCGTGTTGGTGT 59.058 50.000 0.00 0.00 43.01 4.16
247 248 3.746108 CGATTGGTTCGTGTTGGTG 57.254 52.632 0.00 0.00 43.01 4.17
280 281 2.693250 AAAGAAAAACAGGCCGCCGC 62.693 55.000 3.05 0.00 0.00 6.53
281 282 0.249280 AAAAGAAAAACAGGCCGCCG 60.249 50.000 3.05 1.53 0.00 6.46
282 283 1.948104 AAAAAGAAAAACAGGCCGCC 58.052 45.000 0.00 0.00 0.00 6.13
298 299 2.034812 ACACCGCCGCTTTGATTAAAAA 59.965 40.909 0.00 0.00 0.00 1.94
299 300 1.609555 ACACCGCCGCTTTGATTAAAA 59.390 42.857 0.00 0.00 0.00 1.52
300 301 1.068885 CACACCGCCGCTTTGATTAAA 60.069 47.619 0.00 0.00 0.00 1.52
301 302 0.519519 CACACCGCCGCTTTGATTAA 59.480 50.000 0.00 0.00 0.00 1.40
302 303 1.302383 CCACACCGCCGCTTTGATTA 61.302 55.000 0.00 0.00 0.00 1.75
303 304 2.625823 CCACACCGCCGCTTTGATT 61.626 57.895 0.00 0.00 0.00 2.57
304 305 3.055719 CCACACCGCCGCTTTGAT 61.056 61.111 0.00 0.00 0.00 2.57
311 312 2.666862 TACAAAGCCACACCGCCG 60.667 61.111 0.00 0.00 0.00 6.46
312 313 1.298859 CTCTACAAAGCCACACCGCC 61.299 60.000 0.00 0.00 0.00 6.13
313 314 1.298859 CCTCTACAAAGCCACACCGC 61.299 60.000 0.00 0.00 0.00 5.68
314 315 0.673644 CCCTCTACAAAGCCACACCG 60.674 60.000 0.00 0.00 0.00 4.94
315 316 0.960861 GCCCTCTACAAAGCCACACC 60.961 60.000 0.00 0.00 0.00 4.16
316 317 1.298859 CGCCCTCTACAAAGCCACAC 61.299 60.000 0.00 0.00 0.00 3.82
317 318 1.003839 CGCCCTCTACAAAGCCACA 60.004 57.895 0.00 0.00 0.00 4.17
318 319 2.399356 GCGCCCTCTACAAAGCCAC 61.399 63.158 0.00 0.00 0.00 5.01
319 320 2.046314 GCGCCCTCTACAAAGCCA 60.046 61.111 0.00 0.00 0.00 4.75
320 321 3.195698 CGCGCCCTCTACAAAGCC 61.196 66.667 0.00 0.00 0.00 4.35
321 322 2.434359 ACGCGCCCTCTACAAAGC 60.434 61.111 5.73 0.00 0.00 3.51
322 323 0.802607 GAGACGCGCCCTCTACAAAG 60.803 60.000 18.32 0.00 0.00 2.77
340 341 5.556006 TTCTAGTCGGAAAAGGAAAAGGA 57.444 39.130 0.00 0.00 0.00 3.36
341 342 7.065923 CCTTATTCTAGTCGGAAAAGGAAAAGG 59.934 40.741 0.00 0.00 36.61 3.11
342 343 7.606839 ACCTTATTCTAGTCGGAAAAGGAAAAG 59.393 37.037 16.76 0.00 37.18 2.27
343 344 7.455891 ACCTTATTCTAGTCGGAAAAGGAAAA 58.544 34.615 16.76 0.00 37.18 2.29
344 345 7.012661 ACCTTATTCTAGTCGGAAAAGGAAA 57.987 36.000 16.76 0.00 37.18 3.13
345 346 6.616237 ACCTTATTCTAGTCGGAAAAGGAA 57.384 37.500 16.76 0.00 37.18 3.36
428 478 2.741211 GACGGCGGGTGACTTTCC 60.741 66.667 13.24 0.00 0.00 3.13
430 480 1.890510 GTTGACGGCGGGTGACTTT 60.891 57.895 13.24 0.00 0.00 2.66
495 565 1.843832 GGGAGGTAGGATGGAGGGC 60.844 68.421 0.00 0.00 0.00 5.19
498 568 1.182385 GCGAGGGAGGTAGGATGGAG 61.182 65.000 0.00 0.00 0.00 3.86
499 569 1.152525 GCGAGGGAGGTAGGATGGA 60.153 63.158 0.00 0.00 0.00 3.41
500 570 0.112606 TAGCGAGGGAGGTAGGATGG 59.887 60.000 0.00 0.00 0.00 3.51
502 572 0.112801 GGTAGCGAGGGAGGTAGGAT 59.887 60.000 0.00 0.00 0.00 3.24
518 588 4.597507 GTGGGATAGGGAAAGATGATGGTA 59.402 45.833 0.00 0.00 0.00 3.25
526 596 2.777692 GTGATGGTGGGATAGGGAAAGA 59.222 50.000 0.00 0.00 0.00 2.52
535 605 0.552848 GGTGATGGTGATGGTGGGAT 59.447 55.000 0.00 0.00 0.00 3.85
643 742 3.385384 TGTCCAGCCAGCGGAGAG 61.385 66.667 3.91 0.00 31.65 3.20
644 743 3.695606 GTGTCCAGCCAGCGGAGA 61.696 66.667 3.91 0.91 31.65 3.71
650 749 4.007644 TCTGCCGTGTCCAGCCAG 62.008 66.667 0.00 0.00 0.00 4.85
651 750 4.314440 GTCTGCCGTGTCCAGCCA 62.314 66.667 0.00 0.00 0.00 4.75
698 797 0.172578 CCGAACAGATCCGTGCTACA 59.827 55.000 0.00 0.00 0.00 2.74
741 840 1.605453 GAGGGTTAATCGGGTGGCA 59.395 57.895 0.00 0.00 0.00 4.92
746 845 0.031178 CGTACGGAGGGTTAATCGGG 59.969 60.000 7.57 0.00 0.00 5.14
792 891 4.427394 CGAGCTTCCGGAGAATGG 57.573 61.111 3.34 0.00 0.00 3.16
801 900 1.554583 AAGAAGGGTCCCGAGCTTCC 61.555 60.000 0.99 0.00 0.00 3.46
802 901 0.108089 GAAGAAGGGTCCCGAGCTTC 60.108 60.000 18.52 18.52 0.00 3.86
803 902 0.545548 AGAAGAAGGGTCCCGAGCTT 60.546 55.000 11.34 11.34 0.00 3.74
804 903 0.973496 GAGAAGAAGGGTCCCGAGCT 60.973 60.000 0.99 0.00 0.00 4.09
805 904 1.518302 GAGAAGAAGGGTCCCGAGC 59.482 63.158 0.99 0.00 0.00 5.03
806 905 1.668101 CGGAGAAGAAGGGTCCCGAG 61.668 65.000 0.99 0.00 39.31 4.63
807 906 1.681327 CGGAGAAGAAGGGTCCCGA 60.681 63.158 0.99 0.00 39.31 5.14
808 907 2.722201 CCGGAGAAGAAGGGTCCCG 61.722 68.421 0.99 0.00 36.98 5.14
809 908 1.612739 ACCGGAGAAGAAGGGTCCC 60.613 63.158 9.46 0.00 0.00 4.46
810 909 1.597461 CACCGGAGAAGAAGGGTCC 59.403 63.158 9.46 0.00 0.00 4.46
812 911 2.593956 GCCACCGGAGAAGAAGGGT 61.594 63.158 9.46 0.00 0.00 4.34
831 949 2.032528 CAAAGGCAGCCTGACCGA 59.967 61.111 17.05 0.00 32.13 4.69
839 957 3.130160 CGAGGAGGCAAAGGCAGC 61.130 66.667 0.00 0.00 43.71 5.25
841 959 3.612247 GAGCGAGGAGGCAAAGGCA 62.612 63.158 0.00 0.00 43.71 4.75
871 989 4.623932 ACAACTTACAAGATCCAGAGCA 57.376 40.909 0.00 0.00 0.00 4.26
917 1035 0.307760 CGTGGGAACAGTTGCAGTTC 59.692 55.000 7.16 8.43 44.46 3.01
976 1099 4.814771 GGTAAAGATTGGATAGGGAACACG 59.185 45.833 0.00 0.00 0.00 4.49
1128 1251 3.833650 AGATGCAGATCTCCCACTCATAG 59.166 47.826 0.00 0.00 33.20 2.23
1293 1421 6.712241 ATACATGACACACTCTTTTCTTCG 57.288 37.500 0.00 0.00 0.00 3.79
1343 1471 1.742880 GGCGAGCACATCTGCAGAA 60.743 57.895 22.50 4.23 46.97 3.02
1452 1580 0.719465 CCGTGACGACAAATAGCACC 59.281 55.000 6.54 0.00 0.00 5.01
1460 1588 0.874175 CTTCAGCACCGTGACGACAA 60.874 55.000 6.54 0.00 0.00 3.18
1482 1610 1.171549 TTGCTCGTGCTGGCAAATCA 61.172 50.000 11.19 0.00 44.01 2.57
1523 1663 0.176449 CTGCAGGATCGGTGATGACA 59.824 55.000 5.57 0.00 0.00 3.58
1533 1673 1.457346 CAAGGTGGTTCTGCAGGATC 58.543 55.000 15.13 5.96 0.00 3.36
1535 1675 1.228245 GCAAGGTGGTTCTGCAGGA 60.228 57.895 15.13 0.46 0.00 3.86
1568 1708 1.002134 ACATCCGCTTCCAACCCAG 60.002 57.895 0.00 0.00 0.00 4.45
1669 1809 1.457346 GTCTCCTTCATGTGGCCAAG 58.543 55.000 7.24 0.00 0.00 3.61
1697 1837 2.806856 CTTGATCTCCACGCGCTGC 61.807 63.158 5.73 0.00 0.00 5.25
1771 1911 6.203808 TCATGCTGAAGATCAAAATTCCAG 57.796 37.500 0.00 0.00 0.00 3.86
1773 1913 5.589192 CCTCATGCTGAAGATCAAAATTCC 58.411 41.667 0.00 0.00 0.00 3.01
1774 1914 5.041940 GCCTCATGCTGAAGATCAAAATTC 58.958 41.667 0.00 0.00 36.87 2.17
1775 1915 4.464951 TGCCTCATGCTGAAGATCAAAATT 59.535 37.500 0.00 0.00 42.00 1.82
1776 1916 4.021229 TGCCTCATGCTGAAGATCAAAAT 58.979 39.130 0.00 0.00 42.00 1.82
1777 1917 3.423749 TGCCTCATGCTGAAGATCAAAA 58.576 40.909 0.00 0.00 42.00 2.44
1830 1971 4.082190 TGTCCAGTCTATACTTGTCAGCAC 60.082 45.833 0.00 0.00 31.97 4.40
1844 1985 0.178921 TCCTTGAGCCTGTCCAGTCT 60.179 55.000 0.00 0.00 0.00 3.24
1906 2047 0.617413 ATGCCAGAGTAGTTGCTGCT 59.383 50.000 0.00 0.00 0.00 4.24
2038 2179 0.987294 ACACCATAGGACAGCTTGCT 59.013 50.000 0.00 0.00 0.00 3.91
2098 2241 0.542467 TAGCACCCTTACGGTCACCA 60.542 55.000 0.00 0.00 43.58 4.17
2102 2245 1.277273 ACCTTTAGCACCCTTACGGTC 59.723 52.381 0.00 0.00 43.58 4.79
2106 2249 3.008704 TCTTGGACCTTTAGCACCCTTAC 59.991 47.826 0.00 0.00 0.00 2.34
2132 2279 6.652481 CCATGAACAGAGACTACAACAGATTT 59.348 38.462 0.00 0.00 0.00 2.17
2136 2283 4.887748 ACCATGAACAGAGACTACAACAG 58.112 43.478 0.00 0.00 0.00 3.16
2139 2286 3.614150 GCGACCATGAACAGAGACTACAA 60.614 47.826 0.00 0.00 0.00 2.41
2245 2398 4.357996 GAGAGGAAATGCAAGCATTAAGC 58.642 43.478 19.45 12.14 44.86 3.09
2302 2455 3.117663 ACAGAACAAGAGGGCTACCAAAA 60.118 43.478 0.00 0.00 40.13 2.44
2310 2463 0.536006 ACAGCACAGAACAAGAGGGC 60.536 55.000 0.00 0.00 0.00 5.19
2312 2465 2.245159 TGACAGCACAGAACAAGAGG 57.755 50.000 0.00 0.00 0.00 3.69
2318 2471 4.797471 TGCAAATAATGACAGCACAGAAC 58.203 39.130 0.00 0.00 0.00 3.01
2344 2498 5.048573 GGCACACATAATCACATATGCATCA 60.049 40.000 0.19 0.00 36.87 3.07
2345 2499 5.396484 GGCACACATAATCACATATGCATC 58.604 41.667 0.19 0.00 36.87 3.91
2346 2500 4.219070 GGGCACACATAATCACATATGCAT 59.781 41.667 3.79 3.79 36.87 3.96
2347 2501 3.569277 GGGCACACATAATCACATATGCA 59.431 43.478 1.58 0.00 36.87 3.96
2349 2503 4.320714 GCTGGGCACACATAATCACATATG 60.321 45.833 0.00 0.00 38.86 1.78
2351 2505 3.117926 AGCTGGGCACACATAATCACATA 60.118 43.478 0.00 0.00 0.00 2.29
2353 2507 1.004628 AGCTGGGCACACATAATCACA 59.995 47.619 0.00 0.00 0.00 3.58
2354 2508 1.755179 AGCTGGGCACACATAATCAC 58.245 50.000 0.00 0.00 0.00 3.06
2355 2509 2.093890 CAAGCTGGGCACACATAATCA 58.906 47.619 0.00 0.00 0.00 2.57
2356 2510 1.406539 CCAAGCTGGGCACACATAATC 59.593 52.381 0.00 0.00 32.67 1.75
2357 2511 1.272648 ACCAAGCTGGGCACACATAAT 60.273 47.619 7.20 0.00 43.37 1.28
2358 2512 0.112218 ACCAAGCTGGGCACACATAA 59.888 50.000 7.20 0.00 43.37 1.90
2382 2536 6.041511 TCATGACATCACCAAAACAACAAAG 58.958 36.000 0.00 0.00 0.00 2.77
2387 2541 6.041865 AGGAAATCATGACATCACCAAAACAA 59.958 34.615 0.00 0.00 0.00 2.83
2394 2548 4.521146 ACTGAGGAAATCATGACATCACC 58.479 43.478 0.00 0.00 37.28 4.02
2422 2605 0.956633 CAGGATTGTGTTGCTGCAGT 59.043 50.000 16.64 0.00 0.00 4.40
2430 2618 9.088987 AGGTAAAATAAACATCAGGATTGTGTT 57.911 29.630 0.00 0.00 37.66 3.32
2448 2636 8.079809 GCACACAACAATACTACAAGGTAAAAT 58.920 33.333 0.00 0.00 0.00 1.82
2471 2659 1.713932 GTTCAAAAGAATTCGCGGCAC 59.286 47.619 6.13 0.00 0.00 5.01
2475 2663 3.295397 CGATGTGTTCAAAAGAATTCGCG 59.705 43.478 0.00 0.00 0.00 5.87
2477 2665 5.336990 GTGACGATGTGTTCAAAAGAATTCG 59.663 40.000 0.00 0.00 0.00 3.34
2480 2668 5.749596 TGTGACGATGTGTTCAAAAGAAT 57.250 34.783 0.00 0.00 0.00 2.40
2496 2684 2.993220 TGTTCCGAAATCTGATGTGACG 59.007 45.455 0.00 0.00 0.00 4.35
2506 2694 0.804989 CCTGGTGCTGTTCCGAAATC 59.195 55.000 0.00 0.00 0.00 2.17
2519 2707 5.046591 TCAGATGGTACTTAGTTTCCTGGTG 60.047 44.000 0.00 0.00 0.00 4.17
2520 2708 5.091552 TCAGATGGTACTTAGTTTCCTGGT 58.908 41.667 0.00 0.00 0.00 4.00
2521 2709 5.677319 TCAGATGGTACTTAGTTTCCTGG 57.323 43.478 0.00 0.00 0.00 4.45
2542 2730 7.148289 GCCCCTTACTTTGTAACTAAGACAATC 60.148 40.741 0.00 0.00 36.71 2.67
2559 2747 2.174854 ACAACACAGAAAGCCCCTTACT 59.825 45.455 0.00 0.00 0.00 2.24
2580 2768 2.645297 TCAGGTGTTGGTTATTGGCCTA 59.355 45.455 3.32 0.00 0.00 3.93
2585 2773 3.305335 GCTGGTTCAGGTGTTGGTTATTG 60.305 47.826 0.00 0.00 31.21 1.90
2588 2776 1.477923 GGCTGGTTCAGGTGTTGGTTA 60.478 52.381 0.00 0.00 31.21 2.85
2590 2778 1.152756 GGCTGGTTCAGGTGTTGGT 60.153 57.895 0.00 0.00 31.21 3.67
2636 2824 2.906389 TGTCAGATGCATATACCCCTCC 59.094 50.000 0.00 0.00 0.00 4.30
2637 2825 3.618507 GCTGTCAGATGCATATACCCCTC 60.619 52.174 3.32 0.00 0.00 4.30
2638 2826 2.304180 GCTGTCAGATGCATATACCCCT 59.696 50.000 3.32 0.00 0.00 4.79
2639 2827 2.038952 TGCTGTCAGATGCATATACCCC 59.961 50.000 3.32 0.00 33.94 4.95
2640 2828 3.407424 TGCTGTCAGATGCATATACCC 57.593 47.619 3.32 0.00 33.94 3.69
2642 2830 4.063689 AGCTTGCTGTCAGATGCATATAC 58.936 43.478 3.32 0.00 39.07 1.47
2643 2831 4.347360 AGCTTGCTGTCAGATGCATATA 57.653 40.909 3.32 0.00 39.07 0.86
2644 2832 3.210232 AGCTTGCTGTCAGATGCATAT 57.790 42.857 3.32 0.00 39.07 1.78
2645 2833 2.704464 AGCTTGCTGTCAGATGCATA 57.296 45.000 3.32 0.00 39.07 3.14
2646 2834 2.286872 GTAGCTTGCTGTCAGATGCAT 58.713 47.619 0.00 0.00 39.07 3.96
2647 2835 1.676916 GGTAGCTTGCTGTCAGATGCA 60.677 52.381 3.32 0.00 37.42 3.96
2648 2836 1.012841 GGTAGCTTGCTGTCAGATGC 58.987 55.000 3.32 4.13 0.00 3.91
2649 2837 2.687700 AGGTAGCTTGCTGTCAGATG 57.312 50.000 3.32 0.00 0.00 2.90
2650 2838 3.008375 TGAAAGGTAGCTTGCTGTCAGAT 59.992 43.478 13.76 0.00 0.00 2.90
2651 2839 2.368548 TGAAAGGTAGCTTGCTGTCAGA 59.631 45.455 13.76 0.00 0.00 3.27
2652 2840 2.771089 TGAAAGGTAGCTTGCTGTCAG 58.229 47.619 13.76 0.00 0.00 3.51
2653 2841 2.928801 TGAAAGGTAGCTTGCTGTCA 57.071 45.000 13.76 8.25 0.00 3.58
2654 2842 3.671702 GCATTGAAAGGTAGCTTGCTGTC 60.672 47.826 13.76 5.76 0.00 3.51
2655 2843 2.229784 GCATTGAAAGGTAGCTTGCTGT 59.770 45.455 13.76 0.00 0.00 4.40
2656 2844 2.490903 AGCATTGAAAGGTAGCTTGCTG 59.509 45.455 15.35 7.27 37.55 4.41
2657 2845 2.490903 CAGCATTGAAAGGTAGCTTGCT 59.509 45.455 13.76 12.48 39.38 3.91
2658 2846 2.416431 CCAGCATTGAAAGGTAGCTTGC 60.416 50.000 8.16 6.85 32.35 4.01
2659 2847 2.165030 CCCAGCATTGAAAGGTAGCTTG 59.835 50.000 8.16 0.00 32.35 4.01
2660 2848 2.225117 ACCCAGCATTGAAAGGTAGCTT 60.225 45.455 0.12 0.12 32.35 3.74
2661 2849 1.355720 ACCCAGCATTGAAAGGTAGCT 59.644 47.619 0.00 0.00 35.63 3.32
2662 2850 1.474077 CACCCAGCATTGAAAGGTAGC 59.526 52.381 0.00 0.00 0.00 3.58
2663 2851 2.749621 GTCACCCAGCATTGAAAGGTAG 59.250 50.000 0.00 0.00 0.00 3.18
2664 2852 2.554344 GGTCACCCAGCATTGAAAGGTA 60.554 50.000 0.00 0.00 0.00 3.08
2665 2853 1.620822 GTCACCCAGCATTGAAAGGT 58.379 50.000 0.00 0.00 0.00 3.50
2666 2854 0.890683 GGTCACCCAGCATTGAAAGG 59.109 55.000 0.00 0.00 0.00 3.11
2667 2855 1.915141 AGGTCACCCAGCATTGAAAG 58.085 50.000 0.00 0.00 0.00 2.62
2668 2856 2.158475 AGAAGGTCACCCAGCATTGAAA 60.158 45.455 0.00 0.00 0.00 2.69
2672 2860 1.366319 AGAGAAGGTCACCCAGCATT 58.634 50.000 0.00 0.00 0.00 3.56
2691 2879 2.273179 AAGTCCCACGCGCAGACTA 61.273 57.895 21.82 0.00 39.92 2.59
2707 2895 7.036829 TGCAACATCATATTTTGGACATCAAG 58.963 34.615 0.00 0.00 36.62 3.02
2708 2896 6.932947 TGCAACATCATATTTTGGACATCAA 58.067 32.000 0.00 0.00 0.00 2.57
2709 2897 6.527057 TGCAACATCATATTTTGGACATCA 57.473 33.333 0.00 0.00 0.00 3.07
2710 2898 8.355169 ACTATGCAACATCATATTTTGGACATC 58.645 33.333 0.00 0.00 0.00 3.06
2711 2899 8.241497 ACTATGCAACATCATATTTTGGACAT 57.759 30.769 0.00 0.00 0.00 3.06
2712 2900 7.557358 AGACTATGCAACATCATATTTTGGACA 59.443 33.333 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.