Multiple sequence alignment - TraesCS7D01G459200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G459200 chr7D 100.000 3008 0 0 1 3008 576635774 576632767 0.000000e+00 5555
1 TraesCS7D01G459200 chr7D 80.804 995 140 27 1306 2284 576302790 576303749 0.000000e+00 732
2 TraesCS7D01G459200 chr7D 81.492 362 63 3 1312 1669 576747573 576747934 8.150000e-76 294
3 TraesCS7D01G459200 chr7A 88.223 1970 194 21 891 2835 667946151 667944195 0.000000e+00 2318
4 TraesCS7D01G459200 chr7A 85.569 1767 190 41 405 2149 667963880 667962157 0.000000e+00 1790
5 TraesCS7D01G459200 chr7A 84.524 672 96 4 1385 2056 667229953 667230616 0.000000e+00 658
6 TraesCS7D01G459200 chr7A 84.570 512 56 13 2151 2641 667961873 667961364 1.250000e-133 486
7 TraesCS7D01G459200 chr7A 80.501 359 64 2 1315 1667 668528390 668528748 1.370000e-68 270
8 TraesCS7D01G459200 chr7A 91.667 168 9 3 2841 3008 667944133 667943971 8.390000e-56 228
9 TraesCS7D01G459200 chr7A 79.699 266 50 4 1697 1960 668311277 668311014 3.960000e-44 189
10 TraesCS7D01G459200 chr7A 86.747 166 13 4 2835 3000 667961161 667961005 3.080000e-40 176
11 TraesCS7D01G459200 chr7A 86.777 121 13 3 2361 2480 667232374 667232492 6.770000e-27 132
12 TraesCS7D01G459200 chr7B 84.037 758 105 9 1306 2056 639039082 639039830 0.000000e+00 715
13 TraesCS7D01G459200 chr7B 79.944 359 64 4 1315 1667 639379306 639378950 1.070000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G459200 chr7D 576632767 576635774 3007 True 5555.000000 5555 100.000000 1 3008 1 chr7D.!!$R1 3007
1 TraesCS7D01G459200 chr7D 576302790 576303749 959 False 732.000000 732 80.804000 1306 2284 1 chr7D.!!$F1 978
2 TraesCS7D01G459200 chr7A 667943971 667946151 2180 True 1273.000000 2318 89.945000 891 3008 2 chr7A.!!$R2 2117
3 TraesCS7D01G459200 chr7A 667961005 667963880 2875 True 817.333333 1790 85.628667 405 3000 3 chr7A.!!$R3 2595
4 TraesCS7D01G459200 chr7A 667229953 667232492 2539 False 395.000000 658 85.650500 1385 2480 2 chr7A.!!$F2 1095
5 TraesCS7D01G459200 chr7B 639039082 639039830 748 False 715.000000 715 84.037000 1306 2056 1 chr7B.!!$F1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.030504 CATGCCGCAGAACAAACACA 59.969 50.0 0.0 0.0 0.00 3.72 F
341 342 0.035915 GGGTCTCCACTTCTCTTGCC 60.036 60.0 0.0 0.0 0.00 4.52 F
351 352 0.037326 TTCTCTTGCCGCTGACGAAT 60.037 50.0 0.0 0.0 43.93 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 1773 0.835543 AGACCAGCTTGAGCCTGTCT 60.836 55.000 15.32 15.32 43.26 3.41 R
1957 1996 0.946221 CCCACACGCAGACTTGACTC 60.946 60.000 0.00 0.00 0.00 3.36 R
2034 2081 2.480419 GCACAAACAGAGACTACGCATT 59.520 45.455 0.00 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.983791 TGGTGCTTACCCTACGCC 59.016 61.111 0.00 0.00 34.48 5.68
18 19 1.914263 TGGTGCTTACCCTACGCCA 60.914 57.895 0.00 0.00 41.50 5.69
19 20 1.153429 GGTGCTTACCCTACGCCAG 60.153 63.158 0.00 0.00 34.06 4.85
20 21 1.610554 GGTGCTTACCCTACGCCAGA 61.611 60.000 0.00 0.00 34.06 3.86
21 22 0.459759 GTGCTTACCCTACGCCAGAC 60.460 60.000 0.00 0.00 0.00 3.51
22 23 0.901114 TGCTTACCCTACGCCAGACA 60.901 55.000 0.00 0.00 0.00 3.41
23 24 0.464452 GCTTACCCTACGCCAGACAT 59.536 55.000 0.00 0.00 0.00 3.06
24 25 1.806623 GCTTACCCTACGCCAGACATG 60.807 57.143 0.00 0.00 0.00 3.21
25 26 0.177141 TTACCCTACGCCAGACATGC 59.823 55.000 0.00 0.00 0.00 4.06
26 27 0.686441 TACCCTACGCCAGACATGCT 60.686 55.000 0.00 0.00 0.00 3.79
27 28 1.221840 CCCTACGCCAGACATGCTT 59.778 57.895 0.00 0.00 0.00 3.91
28 29 1.091771 CCCTACGCCAGACATGCTTG 61.092 60.000 0.00 0.00 0.00 4.01
29 30 1.709147 CCTACGCCAGACATGCTTGC 61.709 60.000 0.00 0.00 32.18 4.01
30 31 1.003959 TACGCCAGACATGCTTGCA 60.004 52.632 11.68 0.00 35.08 4.08
31 32 0.605050 TACGCCAGACATGCTTGCAA 60.605 50.000 0.00 0.00 35.08 4.08
32 33 1.246056 ACGCCAGACATGCTTGCAAT 61.246 50.000 0.00 0.00 35.08 3.56
33 34 0.108992 CGCCAGACATGCTTGCAATT 60.109 50.000 0.00 0.00 35.08 2.32
34 35 1.670674 CGCCAGACATGCTTGCAATTT 60.671 47.619 0.00 0.00 35.08 1.82
35 36 2.415759 CGCCAGACATGCTTGCAATTTA 60.416 45.455 0.00 0.00 35.08 1.40
36 37 3.735820 CGCCAGACATGCTTGCAATTTAT 60.736 43.478 0.00 0.00 35.08 1.40
37 38 3.800506 GCCAGACATGCTTGCAATTTATC 59.199 43.478 0.00 0.00 35.45 1.75
38 39 4.678574 GCCAGACATGCTTGCAATTTATCA 60.679 41.667 0.00 0.00 35.45 2.15
39 40 4.802039 CCAGACATGCTTGCAATTTATCAC 59.198 41.667 0.00 0.00 0.00 3.06
40 41 4.802039 CAGACATGCTTGCAATTTATCACC 59.198 41.667 0.00 0.00 0.00 4.02
41 42 4.114794 GACATGCTTGCAATTTATCACCC 58.885 43.478 0.00 0.00 0.00 4.61
42 43 3.770933 ACATGCTTGCAATTTATCACCCT 59.229 39.130 0.00 0.00 0.00 4.34
43 44 4.142093 ACATGCTTGCAATTTATCACCCTC 60.142 41.667 0.00 0.00 0.00 4.30
44 45 2.423185 TGCTTGCAATTTATCACCCTCG 59.577 45.455 0.00 0.00 0.00 4.63
45 46 2.223572 GCTTGCAATTTATCACCCTCGG 60.224 50.000 0.00 0.00 0.00 4.63
46 47 2.799126 TGCAATTTATCACCCTCGGT 57.201 45.000 0.00 0.00 35.62 4.69
47 48 2.639065 TGCAATTTATCACCCTCGGTC 58.361 47.619 0.00 0.00 31.02 4.79
48 49 2.238646 TGCAATTTATCACCCTCGGTCT 59.761 45.455 0.00 0.00 31.02 3.85
49 50 3.452990 TGCAATTTATCACCCTCGGTCTA 59.547 43.478 0.00 0.00 31.02 2.59
50 51 4.058817 GCAATTTATCACCCTCGGTCTAG 58.941 47.826 0.00 0.00 31.02 2.43
51 52 4.202223 GCAATTTATCACCCTCGGTCTAGA 60.202 45.833 0.00 0.00 31.02 2.43
52 53 5.511545 GCAATTTATCACCCTCGGTCTAGAT 60.512 44.000 0.00 0.00 31.02 1.98
53 54 5.730296 ATTTATCACCCTCGGTCTAGATG 57.270 43.478 0.00 0.00 31.02 2.90
54 55 4.448720 TTATCACCCTCGGTCTAGATGA 57.551 45.455 0.00 0.00 31.02 2.92
55 56 3.534357 ATCACCCTCGGTCTAGATGAT 57.466 47.619 0.00 0.00 31.02 2.45
56 57 3.314307 TCACCCTCGGTCTAGATGATT 57.686 47.619 0.00 0.00 31.02 2.57
57 58 3.643237 TCACCCTCGGTCTAGATGATTT 58.357 45.455 0.00 0.00 31.02 2.17
58 59 3.384789 TCACCCTCGGTCTAGATGATTTG 59.615 47.826 0.00 0.00 31.02 2.32
59 60 3.384789 CACCCTCGGTCTAGATGATTTGA 59.615 47.826 0.00 0.00 31.02 2.69
60 61 3.639094 ACCCTCGGTCTAGATGATTTGAG 59.361 47.826 0.00 0.00 0.00 3.02
61 62 3.891977 CCCTCGGTCTAGATGATTTGAGA 59.108 47.826 0.00 0.00 0.00 3.27
62 63 4.342378 CCCTCGGTCTAGATGATTTGAGAA 59.658 45.833 0.00 0.00 0.00 2.87
63 64 5.163405 CCCTCGGTCTAGATGATTTGAGAAA 60.163 44.000 0.00 0.00 0.00 2.52
64 65 5.751028 CCTCGGTCTAGATGATTTGAGAAAC 59.249 44.000 0.00 0.00 0.00 2.78
65 66 6.406400 CCTCGGTCTAGATGATTTGAGAAACT 60.406 42.308 0.00 0.00 0.00 2.66
66 67 6.333416 TCGGTCTAGATGATTTGAGAAACTG 58.667 40.000 0.00 0.00 0.00 3.16
67 68 6.152831 TCGGTCTAGATGATTTGAGAAACTGA 59.847 38.462 0.00 0.00 0.00 3.41
68 69 6.813649 CGGTCTAGATGATTTGAGAAACTGAA 59.186 38.462 0.00 0.00 0.00 3.02
69 70 7.201478 CGGTCTAGATGATTTGAGAAACTGAAC 60.201 40.741 0.00 0.00 0.00 3.18
70 71 7.065204 GGTCTAGATGATTTGAGAAACTGAACC 59.935 40.741 0.00 0.00 0.00 3.62
71 72 7.604164 GTCTAGATGATTTGAGAAACTGAACCA 59.396 37.037 0.00 0.00 0.00 3.67
72 73 8.324306 TCTAGATGATTTGAGAAACTGAACCAT 58.676 33.333 0.00 0.00 0.00 3.55
73 74 7.154435 AGATGATTTGAGAAACTGAACCATG 57.846 36.000 0.00 0.00 0.00 3.66
74 75 5.125100 TGATTTGAGAAACTGAACCATGC 57.875 39.130 0.00 0.00 0.00 4.06
75 76 4.022068 TGATTTGAGAAACTGAACCATGCC 60.022 41.667 0.00 0.00 0.00 4.40
76 77 1.522668 TGAGAAACTGAACCATGCCG 58.477 50.000 0.00 0.00 0.00 5.69
77 78 0.169009 GAGAAACTGAACCATGCCGC 59.831 55.000 0.00 0.00 0.00 6.53
78 79 0.537143 AGAAACTGAACCATGCCGCA 60.537 50.000 0.00 0.00 0.00 5.69
79 80 0.109597 GAAACTGAACCATGCCGCAG 60.110 55.000 0.00 5.67 34.65 5.18
80 81 0.537143 AAACTGAACCATGCCGCAGA 60.537 50.000 12.10 0.00 32.86 4.26
81 82 0.537143 AACTGAACCATGCCGCAGAA 60.537 50.000 12.10 0.00 32.86 3.02
82 83 1.237285 ACTGAACCATGCCGCAGAAC 61.237 55.000 12.10 0.00 32.86 3.01
83 84 1.228094 TGAACCATGCCGCAGAACA 60.228 52.632 0.00 0.00 0.00 3.18
84 85 0.821301 TGAACCATGCCGCAGAACAA 60.821 50.000 0.00 0.00 0.00 2.83
85 86 0.313672 GAACCATGCCGCAGAACAAA 59.686 50.000 0.00 0.00 0.00 2.83
86 87 0.031994 AACCATGCCGCAGAACAAAC 59.968 50.000 0.00 0.00 0.00 2.93
87 88 1.106351 ACCATGCCGCAGAACAAACA 61.106 50.000 0.00 0.00 0.00 2.83
88 89 0.664166 CCATGCCGCAGAACAAACAC 60.664 55.000 0.00 0.00 0.00 3.32
89 90 0.030504 CATGCCGCAGAACAAACACA 59.969 50.000 0.00 0.00 0.00 3.72
90 91 0.743688 ATGCCGCAGAACAAACACAA 59.256 45.000 0.00 0.00 0.00 3.33
91 92 0.528017 TGCCGCAGAACAAACACAAA 59.472 45.000 0.00 0.00 0.00 2.83
92 93 1.067565 TGCCGCAGAACAAACACAAAA 60.068 42.857 0.00 0.00 0.00 2.44
93 94 1.587946 GCCGCAGAACAAACACAAAAG 59.412 47.619 0.00 0.00 0.00 2.27
94 95 2.733858 GCCGCAGAACAAACACAAAAGA 60.734 45.455 0.00 0.00 0.00 2.52
95 96 3.506810 CCGCAGAACAAACACAAAAGAA 58.493 40.909 0.00 0.00 0.00 2.52
96 97 3.547468 CCGCAGAACAAACACAAAAGAAG 59.453 43.478 0.00 0.00 0.00 2.85
97 98 4.411327 CGCAGAACAAACACAAAAGAAGA 58.589 39.130 0.00 0.00 0.00 2.87
98 99 5.036737 CGCAGAACAAACACAAAAGAAGAT 58.963 37.500 0.00 0.00 0.00 2.40
99 100 6.198687 CGCAGAACAAACACAAAAGAAGATA 58.801 36.000 0.00 0.00 0.00 1.98
100 101 6.857964 CGCAGAACAAACACAAAAGAAGATAT 59.142 34.615 0.00 0.00 0.00 1.63
101 102 7.059945 CGCAGAACAAACACAAAAGAAGATATC 59.940 37.037 0.00 0.00 0.00 1.63
102 103 7.059945 GCAGAACAAACACAAAAGAAGATATCG 59.940 37.037 0.00 0.00 0.00 2.92
103 104 8.282592 CAGAACAAACACAAAAGAAGATATCGA 58.717 33.333 0.00 0.00 0.00 3.59
104 105 8.836413 AGAACAAACACAAAAGAAGATATCGAA 58.164 29.630 0.00 0.00 0.00 3.71
105 106 9.445786 GAACAAACACAAAAGAAGATATCGAAA 57.554 29.630 0.00 0.00 0.00 3.46
106 107 8.782533 ACAAACACAAAAGAAGATATCGAAAC 57.217 30.769 0.00 0.00 0.00 2.78
107 108 7.860872 ACAAACACAAAAGAAGATATCGAAACC 59.139 33.333 0.00 0.00 0.00 3.27
108 109 6.165659 ACACAAAAGAAGATATCGAAACCG 57.834 37.500 0.00 0.00 0.00 4.44
109 110 5.699458 ACACAAAAGAAGATATCGAAACCGT 59.301 36.000 0.00 0.00 0.00 4.83
110 111 6.128634 ACACAAAAGAAGATATCGAAACCGTC 60.129 38.462 0.00 0.00 0.00 4.79
118 119 3.249999 CGAAACCGTCGCACCAAT 58.750 55.556 0.00 0.00 44.14 3.16
119 120 1.154488 CGAAACCGTCGCACCAATG 60.154 57.895 0.00 0.00 44.14 2.82
120 121 1.209127 GAAACCGTCGCACCAATGG 59.791 57.895 0.00 0.00 0.00 3.16
121 122 2.796245 GAAACCGTCGCACCAATGGC 62.796 60.000 0.00 0.00 0.00 4.40
122 123 3.842925 AACCGTCGCACCAATGGCT 62.843 57.895 0.00 0.00 0.00 4.75
123 124 2.125310 CCGTCGCACCAATGGCTA 60.125 61.111 0.00 0.00 0.00 3.93
124 125 1.523711 CCGTCGCACCAATGGCTAT 60.524 57.895 0.00 0.00 0.00 2.97
125 126 1.498865 CCGTCGCACCAATGGCTATC 61.499 60.000 0.00 0.00 0.00 2.08
126 127 1.498865 CGTCGCACCAATGGCTATCC 61.499 60.000 0.00 0.00 0.00 2.59
137 138 2.645838 TGGCTATCCAATTGCTCTCC 57.354 50.000 0.00 0.00 39.99 3.71
138 139 2.130193 TGGCTATCCAATTGCTCTCCT 58.870 47.619 0.00 0.00 39.99 3.69
139 140 2.511218 TGGCTATCCAATTGCTCTCCTT 59.489 45.455 0.00 0.00 39.99 3.36
140 141 2.883386 GGCTATCCAATTGCTCTCCTTG 59.117 50.000 0.00 0.00 0.00 3.61
141 142 3.434167 GGCTATCCAATTGCTCTCCTTGA 60.434 47.826 0.00 0.00 0.00 3.02
142 143 4.202441 GCTATCCAATTGCTCTCCTTGAA 58.798 43.478 0.00 0.00 0.00 2.69
143 144 4.275443 GCTATCCAATTGCTCTCCTTGAAG 59.725 45.833 0.00 0.00 0.00 3.02
144 145 3.077484 TCCAATTGCTCTCCTTGAAGG 57.923 47.619 4.45 4.45 36.46 3.46
145 146 2.644299 TCCAATTGCTCTCCTTGAAGGA 59.356 45.455 14.16 14.16 43.43 3.36
146 147 2.751806 CCAATTGCTCTCCTTGAAGGAC 59.248 50.000 10.46 1.29 40.06 3.85
147 148 3.415212 CAATTGCTCTCCTTGAAGGACA 58.585 45.455 10.46 4.26 40.06 4.02
148 149 4.015084 CAATTGCTCTCCTTGAAGGACAT 58.985 43.478 10.46 0.00 40.06 3.06
149 150 5.188434 CAATTGCTCTCCTTGAAGGACATA 58.812 41.667 10.46 0.00 40.06 2.29
150 151 3.895232 TGCTCTCCTTGAAGGACATAC 57.105 47.619 10.46 0.99 40.06 2.39
151 152 2.501723 TGCTCTCCTTGAAGGACATACC 59.498 50.000 10.46 0.00 40.06 2.73
152 153 2.501723 GCTCTCCTTGAAGGACATACCA 59.498 50.000 10.46 0.00 40.06 3.25
153 154 3.055094 GCTCTCCTTGAAGGACATACCAA 60.055 47.826 10.46 0.00 40.06 3.67
154 155 4.384647 GCTCTCCTTGAAGGACATACCAAT 60.385 45.833 10.46 0.00 40.06 3.16
155 156 5.359194 TCTCCTTGAAGGACATACCAATC 57.641 43.478 10.46 0.00 40.06 2.67
156 157 4.122776 CTCCTTGAAGGACATACCAATCG 58.877 47.826 10.46 0.00 40.06 3.34
157 158 2.614057 CCTTGAAGGACATACCAATCGC 59.386 50.000 4.95 0.00 37.67 4.58
158 159 2.325583 TGAAGGACATACCAATCGCC 57.674 50.000 0.00 0.00 42.04 5.54
159 160 1.557371 TGAAGGACATACCAATCGCCA 59.443 47.619 0.00 0.00 42.04 5.69
160 161 2.026729 TGAAGGACATACCAATCGCCAA 60.027 45.455 0.00 0.00 42.04 4.52
161 162 2.332063 AGGACATACCAATCGCCAAG 57.668 50.000 0.00 0.00 42.04 3.61
162 163 1.837439 AGGACATACCAATCGCCAAGA 59.163 47.619 0.00 0.00 42.04 3.02
163 164 1.940613 GGACATACCAATCGCCAAGAC 59.059 52.381 0.00 0.00 38.79 3.01
164 165 2.627945 GACATACCAATCGCCAAGACA 58.372 47.619 0.00 0.00 0.00 3.41
165 166 3.206150 GACATACCAATCGCCAAGACAT 58.794 45.455 0.00 0.00 0.00 3.06
166 167 3.620488 ACATACCAATCGCCAAGACATT 58.380 40.909 0.00 0.00 0.00 2.71
167 168 4.776349 ACATACCAATCGCCAAGACATTA 58.224 39.130 0.00 0.00 0.00 1.90
168 169 5.189928 ACATACCAATCGCCAAGACATTAA 58.810 37.500 0.00 0.00 0.00 1.40
169 170 5.650266 ACATACCAATCGCCAAGACATTAAA 59.350 36.000 0.00 0.00 0.00 1.52
170 171 6.151985 ACATACCAATCGCCAAGACATTAAAA 59.848 34.615 0.00 0.00 0.00 1.52
171 172 5.059404 ACCAATCGCCAAGACATTAAAAG 57.941 39.130 0.00 0.00 0.00 2.27
172 173 4.764823 ACCAATCGCCAAGACATTAAAAGA 59.235 37.500 0.00 0.00 0.00 2.52
173 174 5.106157 ACCAATCGCCAAGACATTAAAAGAG 60.106 40.000 0.00 0.00 0.00 2.85
174 175 4.622701 ATCGCCAAGACATTAAAAGAGC 57.377 40.909 0.00 0.00 0.00 4.09
175 176 2.747446 TCGCCAAGACATTAAAAGAGCC 59.253 45.455 0.00 0.00 0.00 4.70
176 177 2.487762 CGCCAAGACATTAAAAGAGCCA 59.512 45.455 0.00 0.00 0.00 4.75
177 178 3.057596 CGCCAAGACATTAAAAGAGCCAA 60.058 43.478 0.00 0.00 0.00 4.52
178 179 4.558496 CGCCAAGACATTAAAAGAGCCAAA 60.558 41.667 0.00 0.00 0.00 3.28
179 180 5.296748 GCCAAGACATTAAAAGAGCCAAAA 58.703 37.500 0.00 0.00 0.00 2.44
180 181 5.406477 GCCAAGACATTAAAAGAGCCAAAAG 59.594 40.000 0.00 0.00 0.00 2.27
181 182 6.738453 GCCAAGACATTAAAAGAGCCAAAAGA 60.738 38.462 0.00 0.00 0.00 2.52
182 183 7.381323 CCAAGACATTAAAAGAGCCAAAAGAT 58.619 34.615 0.00 0.00 0.00 2.40
183 184 7.874528 CCAAGACATTAAAAGAGCCAAAAGATT 59.125 33.333 0.00 0.00 0.00 2.40
184 185 9.264719 CAAGACATTAAAAGAGCCAAAAGATTT 57.735 29.630 0.00 0.00 0.00 2.17
185 186 8.822652 AGACATTAAAAGAGCCAAAAGATTTG 57.177 30.769 0.00 0.00 0.00 2.32
186 187 8.641541 AGACATTAAAAGAGCCAAAAGATTTGA 58.358 29.630 4.47 0.00 0.00 2.69
187 188 9.260002 GACATTAAAAGAGCCAAAAGATTTGAA 57.740 29.630 4.47 0.00 0.00 2.69
188 189 9.264719 ACATTAAAAGAGCCAAAAGATTTGAAG 57.735 29.630 4.47 0.00 0.00 3.02
189 190 9.480053 CATTAAAAGAGCCAAAAGATTTGAAGA 57.520 29.630 4.47 0.00 0.00 2.87
190 191 8.871686 TTAAAAGAGCCAAAAGATTTGAAGAC 57.128 30.769 4.47 0.00 0.00 3.01
191 192 6.469782 AAAGAGCCAAAAGATTTGAAGACA 57.530 33.333 4.47 0.00 0.00 3.41
192 193 5.444663 AGAGCCAAAAGATTTGAAGACAC 57.555 39.130 4.47 0.00 0.00 3.67
193 194 5.136105 AGAGCCAAAAGATTTGAAGACACT 58.864 37.500 4.47 0.00 0.00 3.55
194 195 5.240403 AGAGCCAAAAGATTTGAAGACACTC 59.760 40.000 4.47 0.00 0.00 3.51
195 196 4.279420 AGCCAAAAGATTTGAAGACACTCC 59.721 41.667 4.47 0.00 0.00 3.85
196 197 4.787598 CCAAAAGATTTGAAGACACTCCG 58.212 43.478 4.47 0.00 0.00 4.63
197 198 4.222114 CAAAAGATTTGAAGACACTCCGC 58.778 43.478 0.00 0.00 0.00 5.54
198 199 2.100605 AGATTTGAAGACACTCCGCC 57.899 50.000 0.00 0.00 0.00 6.13
199 200 1.347707 AGATTTGAAGACACTCCGCCA 59.652 47.619 0.00 0.00 0.00 5.69
200 201 1.464997 GATTTGAAGACACTCCGCCAC 59.535 52.381 0.00 0.00 0.00 5.01
201 202 0.534203 TTTGAAGACACTCCGCCACC 60.534 55.000 0.00 0.00 0.00 4.61
202 203 2.432628 GAAGACACTCCGCCACCG 60.433 66.667 0.00 0.00 0.00 4.94
212 213 2.493030 CGCCACCGGATTAGACGT 59.507 61.111 9.46 0.00 0.00 4.34
213 214 1.588139 CGCCACCGGATTAGACGTC 60.588 63.158 9.46 7.70 0.00 4.34
214 215 1.814527 GCCACCGGATTAGACGTCT 59.185 57.895 23.66 23.66 0.00 4.18
215 216 0.175073 GCCACCGGATTAGACGTCTT 59.825 55.000 25.44 6.39 0.00 3.01
216 217 1.801765 GCCACCGGATTAGACGTCTTC 60.802 57.143 25.44 15.99 0.00 2.87
217 218 1.475280 CCACCGGATTAGACGTCTTCA 59.525 52.381 25.44 11.62 0.00 3.02
218 219 2.094390 CCACCGGATTAGACGTCTTCAA 60.094 50.000 25.44 13.57 0.00 2.69
219 220 3.179830 CACCGGATTAGACGTCTTCAAG 58.820 50.000 25.44 12.86 0.00 3.02
220 221 2.165845 ACCGGATTAGACGTCTTCAAGG 59.834 50.000 25.44 22.13 0.00 3.61
221 222 2.165845 CCGGATTAGACGTCTTCAAGGT 59.834 50.000 25.44 0.00 0.00 3.50
222 223 3.379372 CCGGATTAGACGTCTTCAAGGTA 59.621 47.826 25.44 0.00 0.00 3.08
223 224 4.497674 CCGGATTAGACGTCTTCAAGGTAG 60.498 50.000 25.44 8.00 0.00 3.18
224 225 4.497674 CGGATTAGACGTCTTCAAGGTAGG 60.498 50.000 25.44 1.08 0.00 3.18
225 226 4.643784 GGATTAGACGTCTTCAAGGTAGGA 59.356 45.833 25.44 0.00 0.00 2.94
226 227 5.126707 GGATTAGACGTCTTCAAGGTAGGAA 59.873 44.000 25.44 7.99 0.00 3.36
227 228 5.640189 TTAGACGTCTTCAAGGTAGGAAG 57.360 43.478 25.44 0.00 42.42 3.46
228 229 3.764218 AGACGTCTTCAAGGTAGGAAGA 58.236 45.455 13.58 0.99 46.21 2.87
233 234 4.127918 TCTTCAAGGTAGGAAGAGACCA 57.872 45.455 0.99 0.00 44.21 4.02
234 235 4.489737 TCTTCAAGGTAGGAAGAGACCAA 58.510 43.478 0.99 0.00 44.21 3.67
235 236 4.905456 TCTTCAAGGTAGGAAGAGACCAAA 59.095 41.667 0.99 0.00 44.21 3.28
236 237 4.618920 TCAAGGTAGGAAGAGACCAAAC 57.381 45.455 0.00 0.00 38.27 2.93
237 238 3.971305 TCAAGGTAGGAAGAGACCAAACA 59.029 43.478 0.00 0.00 38.27 2.83
238 239 4.410883 TCAAGGTAGGAAGAGACCAAACAA 59.589 41.667 0.00 0.00 38.27 2.83
239 240 5.104277 TCAAGGTAGGAAGAGACCAAACAAA 60.104 40.000 0.00 0.00 38.27 2.83
240 241 5.584551 AGGTAGGAAGAGACCAAACAAAT 57.415 39.130 0.00 0.00 38.27 2.32
241 242 5.561679 AGGTAGGAAGAGACCAAACAAATC 58.438 41.667 0.00 0.00 38.27 2.17
242 243 5.310857 AGGTAGGAAGAGACCAAACAAATCT 59.689 40.000 0.00 0.00 38.27 2.40
243 244 6.004574 GGTAGGAAGAGACCAAACAAATCTT 58.995 40.000 0.00 0.00 35.65 2.40
244 245 7.017254 AGGTAGGAAGAGACCAAACAAATCTTA 59.983 37.037 0.00 0.00 38.27 2.10
245 246 7.829706 GGTAGGAAGAGACCAAACAAATCTTAT 59.170 37.037 0.00 0.00 35.65 1.73
246 247 9.232473 GTAGGAAGAGACCAAACAAATCTTATT 57.768 33.333 0.00 0.00 30.62 1.40
247 248 8.341892 AGGAAGAGACCAAACAAATCTTATTC 57.658 34.615 0.00 0.00 30.62 1.75
248 249 7.394641 AGGAAGAGACCAAACAAATCTTATTCC 59.605 37.037 0.00 0.00 38.10 3.01
249 250 7.176690 GGAAGAGACCAAACAAATCTTATTCCA 59.823 37.037 10.93 0.00 37.92 3.53
250 251 8.477419 AAGAGACCAAACAAATCTTATTCCAA 57.523 30.769 0.00 0.00 0.00 3.53
251 252 8.655935 AGAGACCAAACAAATCTTATTCCAAT 57.344 30.769 0.00 0.00 0.00 3.16
252 253 9.753674 AGAGACCAAACAAATCTTATTCCAATA 57.246 29.630 0.00 0.00 0.00 1.90
255 256 9.087424 GACCAAACAAATCTTATTCCAATAAGC 57.913 33.333 12.49 0.00 44.71 3.09
256 257 8.040727 ACCAAACAAATCTTATTCCAATAAGCC 58.959 33.333 12.49 0.00 44.71 4.35
257 258 8.040132 CCAAACAAATCTTATTCCAATAAGCCA 58.960 33.333 12.49 0.16 44.71 4.75
258 259 9.603921 CAAACAAATCTTATTCCAATAAGCCAT 57.396 29.630 12.49 2.17 44.71 4.40
259 260 9.822185 AAACAAATCTTATTCCAATAAGCCATC 57.178 29.630 12.49 0.00 44.71 3.51
260 261 7.651808 ACAAATCTTATTCCAATAAGCCATCG 58.348 34.615 12.49 4.82 44.71 3.84
261 262 5.886960 ATCTTATTCCAATAAGCCATCGC 57.113 39.130 12.49 0.00 44.71 4.58
262 263 4.072131 TCTTATTCCAATAAGCCATCGCC 58.928 43.478 12.49 0.00 44.71 5.54
263 264 1.238439 ATTCCAATAAGCCATCGCCG 58.762 50.000 0.00 0.00 34.57 6.46
264 265 1.444119 TTCCAATAAGCCATCGCCGC 61.444 55.000 0.00 0.00 34.57 6.53
265 266 1.893808 CCAATAAGCCATCGCCGCT 60.894 57.895 0.00 0.00 38.53 5.52
266 267 0.602638 CCAATAAGCCATCGCCGCTA 60.603 55.000 0.00 0.00 34.84 4.26
267 268 0.512952 CAATAAGCCATCGCCGCTAC 59.487 55.000 0.00 0.00 34.84 3.58
268 269 0.602905 AATAAGCCATCGCCGCTACC 60.603 55.000 0.00 0.00 34.84 3.18
269 270 2.765250 ATAAGCCATCGCCGCTACCG 62.765 60.000 0.00 0.00 34.84 4.02
273 274 4.891727 CATCGCCGCTACCGCCTT 62.892 66.667 0.00 0.00 0.00 4.35
274 275 4.891727 ATCGCCGCTACCGCCTTG 62.892 66.667 0.00 0.00 0.00 3.61
277 278 4.752879 GCCGCTACCGCCTTGTCA 62.753 66.667 0.00 0.00 0.00 3.58
278 279 2.047655 CCGCTACCGCCTTGTCAA 60.048 61.111 0.00 0.00 0.00 3.18
279 280 1.449601 CCGCTACCGCCTTGTCAAT 60.450 57.895 0.00 0.00 0.00 2.57
280 281 1.705337 CCGCTACCGCCTTGTCAATG 61.705 60.000 0.00 0.00 0.00 2.82
281 282 1.019278 CGCTACCGCCTTGTCAATGT 61.019 55.000 0.00 0.00 0.00 2.71
282 283 1.737696 CGCTACCGCCTTGTCAATGTA 60.738 52.381 0.00 0.00 0.00 2.29
283 284 2.352388 GCTACCGCCTTGTCAATGTAA 58.648 47.619 0.00 0.00 0.00 2.41
284 285 2.745281 GCTACCGCCTTGTCAATGTAAA 59.255 45.455 0.00 0.00 0.00 2.01
285 286 3.425758 GCTACCGCCTTGTCAATGTAAAC 60.426 47.826 0.00 0.00 0.00 2.01
286 287 2.577700 ACCGCCTTGTCAATGTAAACA 58.422 42.857 0.00 0.00 0.00 2.83
287 288 2.952978 ACCGCCTTGTCAATGTAAACAA 59.047 40.909 0.00 0.00 34.41 2.83
288 289 3.381908 ACCGCCTTGTCAATGTAAACAAA 59.618 39.130 0.00 0.00 35.13 2.83
289 290 4.142138 ACCGCCTTGTCAATGTAAACAAAA 60.142 37.500 0.00 0.00 35.13 2.44
290 291 4.208253 CCGCCTTGTCAATGTAAACAAAAC 59.792 41.667 0.00 0.00 35.13 2.43
291 292 4.208253 CGCCTTGTCAATGTAAACAAAACC 59.792 41.667 0.00 0.00 35.13 3.27
292 293 5.356426 GCCTTGTCAATGTAAACAAAACCT 58.644 37.500 0.00 0.00 35.13 3.50
293 294 6.508777 GCCTTGTCAATGTAAACAAAACCTA 58.491 36.000 0.00 0.00 35.13 3.08
294 295 6.981559 GCCTTGTCAATGTAAACAAAACCTAA 59.018 34.615 0.00 0.00 35.13 2.69
295 296 7.655732 GCCTTGTCAATGTAAACAAAACCTAAT 59.344 33.333 0.00 0.00 35.13 1.73
323 324 2.200373 AAAAGGGAATGACCAGACGG 57.800 50.000 0.00 0.00 41.20 4.79
324 325 0.328258 AAAGGGAATGACCAGACGGG 59.672 55.000 0.00 0.00 44.81 5.28
333 334 3.793060 CCAGACGGGTCTCCACTT 58.207 61.111 0.00 0.00 37.98 3.16
334 335 1.592223 CCAGACGGGTCTCCACTTC 59.408 63.158 0.00 0.00 37.98 3.01
335 336 0.900647 CCAGACGGGTCTCCACTTCT 60.901 60.000 0.00 0.00 37.98 2.85
336 337 0.528470 CAGACGGGTCTCCACTTCTC 59.472 60.000 0.00 0.00 37.98 2.87
337 338 0.406361 AGACGGGTCTCCACTTCTCT 59.594 55.000 0.00 0.00 34.17 3.10
338 339 1.203075 AGACGGGTCTCCACTTCTCTT 60.203 52.381 0.00 0.00 34.17 2.85
339 340 0.969894 ACGGGTCTCCACTTCTCTTG 59.030 55.000 0.00 0.00 0.00 3.02
340 341 0.390472 CGGGTCTCCACTTCTCTTGC 60.390 60.000 0.00 0.00 0.00 4.01
341 342 0.035915 GGGTCTCCACTTCTCTTGCC 60.036 60.000 0.00 0.00 0.00 4.52
342 343 0.390472 GGTCTCCACTTCTCTTGCCG 60.390 60.000 0.00 0.00 0.00 5.69
343 344 1.016653 GTCTCCACTTCTCTTGCCGC 61.017 60.000 0.00 0.00 0.00 6.53
344 345 1.188219 TCTCCACTTCTCTTGCCGCT 61.188 55.000 0.00 0.00 0.00 5.52
345 346 1.004560 TCCACTTCTCTTGCCGCTG 60.005 57.895 0.00 0.00 0.00 5.18
346 347 1.004560 CCACTTCTCTTGCCGCTGA 60.005 57.895 0.00 0.00 0.00 4.26
347 348 1.294659 CCACTTCTCTTGCCGCTGAC 61.295 60.000 0.00 0.00 0.00 3.51
348 349 1.373497 ACTTCTCTTGCCGCTGACG 60.373 57.895 0.00 0.00 39.67 4.35
349 350 1.080501 CTTCTCTTGCCGCTGACGA 60.081 57.895 0.00 0.00 43.93 4.20
350 351 0.667487 CTTCTCTTGCCGCTGACGAA 60.667 55.000 0.00 0.00 43.93 3.85
351 352 0.037326 TTCTCTTGCCGCTGACGAAT 60.037 50.000 0.00 0.00 43.93 3.34
352 353 0.458543 TCTCTTGCCGCTGACGAATC 60.459 55.000 0.00 0.00 43.93 2.52
353 354 1.424493 CTCTTGCCGCTGACGAATCC 61.424 60.000 0.00 0.00 43.93 3.01
354 355 2.802667 CTTGCCGCTGACGAATCCG 61.803 63.158 0.00 0.00 43.93 4.18
355 356 4.812476 TGCCGCTGACGAATCCGG 62.812 66.667 0.00 0.00 43.93 5.14
357 358 3.833645 CCGCTGACGAATCCGGGA 61.834 66.667 0.00 0.00 43.93 5.14
358 359 2.582498 CGCTGACGAATCCGGGAC 60.582 66.667 0.00 0.00 43.93 4.46
371 372 2.269241 GGGACGGGGAAGAGCAAG 59.731 66.667 0.00 0.00 0.00 4.01
372 373 2.269241 GGACGGGGAAGAGCAAGG 59.731 66.667 0.00 0.00 0.00 3.61
373 374 2.269241 GACGGGGAAGAGCAAGGG 59.731 66.667 0.00 0.00 0.00 3.95
374 375 3.330720 ACGGGGAAGAGCAAGGGG 61.331 66.667 0.00 0.00 0.00 4.79
375 376 3.009115 CGGGGAAGAGCAAGGGGA 61.009 66.667 0.00 0.00 0.00 4.81
376 377 3.002371 GGGGAAGAGCAAGGGGAG 58.998 66.667 0.00 0.00 0.00 4.30
377 378 2.684499 GGGGAAGAGCAAGGGGAGG 61.684 68.421 0.00 0.00 0.00 4.30
378 379 2.684499 GGGAAGAGCAAGGGGAGGG 61.684 68.421 0.00 0.00 0.00 4.30
379 380 2.684499 GGAAGAGCAAGGGGAGGGG 61.684 68.421 0.00 0.00 0.00 4.79
380 381 2.615288 AAGAGCAAGGGGAGGGGG 60.615 66.667 0.00 0.00 0.00 5.40
418 419 1.072505 GCGGGGAGAAACTTGGTGA 59.927 57.895 0.00 0.00 0.00 4.02
421 422 0.605589 GGGGAGAAACTTGGTGACGG 60.606 60.000 0.00 0.00 0.00 4.79
428 429 4.619227 CTTGGTGACGGCGTGGGT 62.619 66.667 21.19 0.00 0.00 4.51
429 430 4.178169 TTGGTGACGGCGTGGGTT 62.178 61.111 21.19 0.00 0.00 4.11
430 431 4.920112 TGGTGACGGCGTGGGTTG 62.920 66.667 21.19 0.00 0.00 3.77
453 454 5.534654 TGGGTCAGTCAACCTTTGATAAAAG 59.465 40.000 0.00 0.00 42.47 2.27
529 534 1.730064 CTTCCACCGTCAATACCAACG 59.270 52.381 0.00 0.00 38.58 4.10
532 537 0.719465 CACCGTCAATACCAACGAGC 59.281 55.000 0.00 0.00 41.29 5.03
553 558 2.032302 CCAGTCGAGTCGTAATCCTCAG 59.968 54.545 13.12 0.00 0.00 3.35
584 589 4.681978 ACTCGCCGCCACCACTTC 62.682 66.667 0.00 0.00 0.00 3.01
602 607 1.830408 CCTCCTCTCGCTCCGGATT 60.830 63.158 3.57 0.00 0.00 3.01
611 616 2.040884 CTCCGGATTCCCTCCCCA 60.041 66.667 3.57 0.00 41.49 4.96
613 618 2.690881 CCGGATTCCCTCCCCACA 60.691 66.667 0.00 0.00 41.49 4.17
693 705 3.536917 CCGGCAGGCCAGTCGATA 61.537 66.667 24.96 0.00 39.34 2.92
694 706 2.279517 CGGCAGGCCAGTCGATAC 60.280 66.667 18.35 0.00 39.34 2.24
695 707 2.279517 GGCAGGCCAGTCGATACG 60.280 66.667 5.01 0.00 35.81 3.06
696 708 2.962253 GCAGGCCAGTCGATACGC 60.962 66.667 5.01 0.00 0.00 4.42
697 709 2.279517 CAGGCCAGTCGATACGCC 60.280 66.667 5.01 10.65 41.96 5.68
698 710 2.442272 AGGCCAGTCGATACGCCT 60.442 61.111 14.36 14.36 46.96 5.52
699 711 2.027751 GGCCAGTCGATACGCCTC 59.972 66.667 0.00 0.00 38.41 4.70
700 712 2.353607 GCCAGTCGATACGCCTCG 60.354 66.667 1.08 1.08 39.99 4.63
701 713 2.353607 CCAGTCGATACGCCTCGC 60.354 66.667 2.58 0.00 38.52 5.03
702 714 2.353607 CAGTCGATACGCCTCGCC 60.354 66.667 2.58 0.00 38.52 5.54
703 715 3.950254 AGTCGATACGCCTCGCCG 61.950 66.667 2.58 0.00 38.52 6.46
704 716 4.977126 GTCGATACGCCTCGCCGG 62.977 72.222 0.00 0.00 38.52 6.13
765 777 0.984230 TAGGGTTTCTGCTCCAGTGG 59.016 55.000 1.40 1.40 32.61 4.00
787 801 2.985847 GTGAGCCGCCTTTGCCTT 60.986 61.111 0.00 0.00 0.00 4.35
792 806 2.259511 CCGCCTTTGCCTTCTTGC 59.740 61.111 0.00 0.00 0.00 4.01
800 814 3.367087 CCTTTGCCTTCTTGCTTCTCATG 60.367 47.826 0.00 0.00 0.00 3.07
801 815 1.171308 TGCCTTCTTGCTTCTCATGC 58.829 50.000 0.00 0.00 0.00 4.06
802 816 0.455005 GCCTTCTTGCTTCTCATGCC 59.545 55.000 0.00 0.00 0.00 4.40
812 826 1.808945 CTTCTCATGCCTTTGCTCGTT 59.191 47.619 0.00 0.00 38.71 3.85
834 848 4.053983 TGCTTGCTGAATCGAGCTTATAG 58.946 43.478 4.83 0.00 42.58 1.31
838 852 2.608261 GCTGAATCGAGCTTATAGGCGT 60.608 50.000 0.61 0.00 35.95 5.68
839 853 3.643763 CTGAATCGAGCTTATAGGCGTT 58.356 45.455 0.61 0.00 37.29 4.84
842 856 3.944055 ATCGAGCTTATAGGCGTTCAT 57.056 42.857 0.61 0.00 37.29 2.57
851 865 0.619255 TAGGCGTTCATTCCCCAGGA 60.619 55.000 0.00 0.00 0.00 3.86
854 868 1.657751 GCGTTCATTCCCCAGGAAGC 61.658 60.000 2.08 0.00 45.48 3.86
860 874 0.322546 ATTCCCCAGGAAGCAACGTC 60.323 55.000 2.08 0.00 45.48 4.34
896 914 3.618690 AAGAAACTTCCCCTCAGATCG 57.381 47.619 0.00 0.00 0.00 3.69
959 977 0.661187 CAATGTTGTGCGGTCAGTGC 60.661 55.000 0.00 0.00 0.00 4.40
960 978 1.100463 AATGTTGTGCGGTCAGTGCA 61.100 50.000 0.00 0.00 40.70 4.57
995 1013 2.032528 CGGCTTCAGCTTGACCCA 59.967 61.111 0.00 0.00 41.70 4.51
1050 1068 3.613494 TGGAATTTCGATGGGTACGAA 57.387 42.857 0.00 0.00 45.65 3.85
1057 1075 2.043992 TCGATGGGTACGAATGGGAAT 58.956 47.619 0.00 0.00 36.84 3.01
1081 1099 3.393800 CGTGTCTATCCTAATTGCTGGG 58.606 50.000 0.00 0.00 0.00 4.45
1093 1111 1.195115 TTGCTGGGGCTACTCTGTAG 58.805 55.000 0.77 0.77 39.59 2.74
1094 1112 1.330655 TGCTGGGGCTACTCTGTAGC 61.331 60.000 18.23 18.23 39.59 3.58
1101 1119 1.825474 GGCTACTCTGTAGCAGTGGAA 59.175 52.381 24.87 0.00 42.06 3.53
1186 1204 2.740055 GCAGTGTGAGGGTCGCTG 60.740 66.667 0.00 0.00 43.57 5.18
1189 1207 0.532573 CAGTGTGAGGGTCGCTGTAT 59.467 55.000 0.00 0.00 38.24 2.29
1240 1258 5.159721 GCTTGAGCCATCCAACGAAGTTT 62.160 47.826 0.00 0.00 42.13 2.66
1269 1287 1.303317 GGTGTTCAGCCGTCCCAAT 60.303 57.895 0.00 0.00 0.00 3.16
1272 1290 0.327924 TGTTCAGCCGTCCCAATGAT 59.672 50.000 0.00 0.00 0.00 2.45
1274 1292 2.026729 TGTTCAGCCGTCCCAATGATTA 60.027 45.455 0.00 0.00 0.00 1.75
1275 1293 3.214328 GTTCAGCCGTCCCAATGATTAT 58.786 45.455 0.00 0.00 0.00 1.28
1280 1298 5.013079 TCAGCCGTCCCAATGATTATATCTT 59.987 40.000 0.00 0.00 0.00 2.40
1429 1468 0.961019 GCCATCCTCAAACTTGCACA 59.039 50.000 0.00 0.00 0.00 4.57
1437 1476 2.684881 CTCAAACTTGCACAGACACCTT 59.315 45.455 0.00 0.00 0.00 3.50
1451 1490 1.302033 ACCTTGCTGAACTCCTGCG 60.302 57.895 0.00 0.00 41.93 5.18
1487 1526 3.846023 GCAGATGTCACGTTTCTTGTGTG 60.846 47.826 0.00 0.00 38.48 3.82
1563 1602 0.984230 TGGCCGAGTTCTTTGGAGAT 59.016 50.000 0.00 0.00 31.06 2.75
1575 1614 8.100135 AGTTCTTTGGAGATATGAAGGAGAAT 57.900 34.615 0.00 0.00 0.00 2.40
1624 1663 1.026718 GCAGGCTGCGGTATTCAAGT 61.027 55.000 25.47 0.00 31.71 3.16
1750 1789 0.177604 CCTAGACAGGCTCAAGCTGG 59.822 60.000 1.46 0.00 41.70 4.85
1864 1903 0.716108 GAAGTGCGTCCAGTTCATCG 59.284 55.000 6.43 0.00 46.18 3.84
1920 1959 3.745480 CGACGGAGGGGTACAAGTATCTA 60.745 52.174 0.00 0.00 0.00 1.98
1957 1996 1.784525 GGTGTTGTCTGACCTTCTCG 58.215 55.000 5.17 0.00 0.00 4.04
2030 2077 3.005791 GTGCTGCTAGTGGTCCAAAATTT 59.994 43.478 0.00 0.00 0.00 1.82
2034 2081 5.646360 GCTGCTAGTGGTCCAAAATTTAGTA 59.354 40.000 0.00 0.00 0.00 1.82
2056 2103 1.202475 TGCGTAGTCTCTGTTTGTGCA 60.202 47.619 0.00 0.00 0.00 4.57
2061 2108 0.110056 GTCTCTGTTTGTGCATGCCG 60.110 55.000 16.68 0.00 0.00 5.69
2081 2128 5.221541 TGCCGTGTATGTGGTATGATTATCA 60.222 40.000 0.00 0.00 0.00 2.15
2114 2161 5.605564 TGTCATGTCTTAACAATGAACCG 57.394 39.130 0.00 0.00 39.30 4.44
2142 2190 4.012374 CGGTAGGTTAGTCTCTGGTTGTA 58.988 47.826 0.00 0.00 0.00 2.41
2144 2192 5.015515 GGTAGGTTAGTCTCTGGTTGTACT 58.984 45.833 0.00 0.00 0.00 2.73
2159 2492 5.722441 TGGTTGTACTAGTTATCCATGGACA 59.278 40.000 18.99 0.87 0.00 4.02
2188 2524 2.348411 AACTTGTGTTCCCCTGACTG 57.652 50.000 0.00 0.00 0.00 3.51
2194 2530 2.510382 TGTGTTCCCCTGACTGGTTTAA 59.490 45.455 0.00 0.00 0.00 1.52
2198 2534 3.449746 TCCCCTGACTGGTTTAAATGG 57.550 47.619 0.00 0.00 0.00 3.16
2199 2535 2.719705 TCCCCTGACTGGTTTAAATGGT 59.280 45.455 0.00 0.00 0.00 3.55
2200 2536 3.089284 CCCCTGACTGGTTTAAATGGTC 58.911 50.000 0.00 1.70 0.00 4.02
2202 2538 3.499563 CCCTGACTGGTTTAAATGGTCCA 60.500 47.826 0.00 0.00 0.00 4.02
2205 2541 4.991776 TGACTGGTTTAAATGGTCCATGA 58.008 39.130 4.74 0.00 0.00 3.07
2250 3388 6.096846 AGTCTAAATGGTCCATTATTTGGTGC 59.903 38.462 17.63 3.79 46.52 5.01
2312 3470 0.114954 TGGAGGGCTTTGGCAAGAAT 59.885 50.000 0.00 0.00 40.87 2.40
2320 3478 3.366781 GGCTTTGGCAAGAATCTTCTGTC 60.367 47.826 0.00 0.00 40.87 3.51
2367 4206 1.007271 CGGAGTGCGCAGGTATAGG 60.007 63.158 12.22 0.00 0.00 2.57
2411 4250 1.477558 CCTGGTGTGTCTTTCAGCCTT 60.478 52.381 0.00 0.00 33.13 4.35
2428 4267 1.204941 CCTTCACACCGGGAGTTCTAG 59.795 57.143 6.32 1.19 0.00 2.43
2470 4309 9.235537 CAAATTTGGGAATGACATTTGAAAAAC 57.764 29.630 10.49 0.00 37.11 2.43
2481 4320 6.593382 TGACATTTGAAAAACCTTCCACTTTG 59.407 34.615 0.00 0.00 0.00 2.77
2486 4325 7.941431 TTGAAAAACCTTCCACTTTGTAGTA 57.059 32.000 0.00 0.00 31.96 1.82
2517 4360 6.252015 CGCAAAGGAAGATGATTTATGTGTTG 59.748 38.462 0.00 0.00 0.00 3.33
2544 4387 4.910458 AGCCAATAGTCAACACCTAAGT 57.090 40.909 0.00 0.00 0.00 2.24
2577 4425 8.240682 GTGGTCTGCATTGTATATTTTGTACAA 58.759 33.333 3.59 3.59 43.74 2.41
2627 4481 9.905713 ATATTTGTGGACATGTAACAGAGTTAT 57.094 29.630 12.25 6.22 0.00 1.89
2672 4526 4.663636 ACCGAAAAAGAGTTAATCGCTG 57.336 40.909 0.00 0.00 32.46 5.18
2674 4528 3.125316 CCGAAAAAGAGTTAATCGCTGCT 59.875 43.478 0.00 0.00 32.46 4.24
2679 4533 5.438761 AAAGAGTTAATCGCTGCTTTGTT 57.561 34.783 0.00 0.00 0.00 2.83
2700 4554 2.265367 TGGAGATTGAAGGTACCTGCA 58.735 47.619 19.60 19.60 0.00 4.41
2713 4567 6.260700 AGGTACCTGCAATAATGGTGATTA 57.739 37.500 15.42 0.00 35.48 1.75
2714 4568 6.852404 AGGTACCTGCAATAATGGTGATTAT 58.148 36.000 15.42 0.00 36.48 1.28
2715 4569 7.297614 AGGTACCTGCAATAATGGTGATTATT 58.702 34.615 15.42 0.00 42.94 1.40
2739 4593 8.455598 TTGTTTTGTTTACTTTTGAGCACTAC 57.544 30.769 0.00 0.00 0.00 2.73
2755 4609 9.555727 TTGAGCACTACTACTTTTAATTTCAGT 57.444 29.630 0.00 0.00 0.00 3.41
2797 4662 7.925483 TGAACACATAAACTTTGAGAAATTGGG 59.075 33.333 0.00 0.00 0.00 4.12
2818 4683 1.926510 TCATATGTCTTCAACGCAGCG 59.073 47.619 14.82 14.82 0.00 5.18
2835 4700 1.959282 AGCGACGGGGTTACCTTATAG 59.041 52.381 0.00 0.00 36.97 1.31
2837 4702 2.287849 GCGACGGGGTTACCTTATAGAC 60.288 54.545 0.00 0.00 36.97 2.59
2839 4704 1.683385 ACGGGGTTACCTTATAGACGC 59.317 52.381 0.00 0.00 36.97 5.19
2884 4805 3.609853 CTTTAGCAGCATCCACCACTAA 58.390 45.455 0.00 0.00 0.00 2.24
2891 4812 4.399303 GCAGCATCCACCACTAATTTTAGT 59.601 41.667 0.00 0.00 44.42 2.24
2894 4815 6.375455 CAGCATCCACCACTAATTTTAGTCTT 59.625 38.462 0.00 0.00 41.82 3.01
2970 4891 6.363577 GCACTGCTAATTGCTATTCTAACA 57.636 37.500 0.00 0.00 43.37 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.153429 CTGGCGTAGGGTAAGCACC 60.153 63.158 0.00 0.00 44.96 5.01
2 3 0.459759 GTCTGGCGTAGGGTAAGCAC 60.460 60.000 0.00 0.00 34.76 4.40
3 4 0.901114 TGTCTGGCGTAGGGTAAGCA 60.901 55.000 0.00 0.00 34.76 3.91
4 5 0.464452 ATGTCTGGCGTAGGGTAAGC 59.536 55.000 0.00 0.00 0.00 3.09
5 6 1.806623 GCATGTCTGGCGTAGGGTAAG 60.807 57.143 0.00 0.00 0.00 2.34
6 7 0.177141 GCATGTCTGGCGTAGGGTAA 59.823 55.000 0.00 0.00 0.00 2.85
7 8 0.686441 AGCATGTCTGGCGTAGGGTA 60.686 55.000 0.00 0.00 36.08 3.69
8 9 1.553690 AAGCATGTCTGGCGTAGGGT 61.554 55.000 0.00 0.00 36.08 4.34
9 10 1.091771 CAAGCATGTCTGGCGTAGGG 61.092 60.000 0.00 0.00 36.08 3.53
10 11 1.709147 GCAAGCATGTCTGGCGTAGG 61.709 60.000 0.00 0.00 30.90 3.18
11 12 1.020861 TGCAAGCATGTCTGGCGTAG 61.021 55.000 10.62 0.00 45.00 3.51
12 13 0.605050 TTGCAAGCATGTCTGGCGTA 60.605 50.000 0.00 1.35 45.00 4.42
13 14 1.246056 ATTGCAAGCATGTCTGGCGT 61.246 50.000 4.94 1.86 45.00 5.68
14 15 0.108992 AATTGCAAGCATGTCTGGCG 60.109 50.000 4.94 0.00 45.00 5.69
15 16 2.088950 AAATTGCAAGCATGTCTGGC 57.911 45.000 4.94 8.95 42.29 4.85
16 17 4.802039 GTGATAAATTGCAAGCATGTCTGG 59.198 41.667 4.94 0.00 0.00 3.86
17 18 4.802039 GGTGATAAATTGCAAGCATGTCTG 59.198 41.667 4.94 0.00 0.00 3.51
18 19 4.142093 GGGTGATAAATTGCAAGCATGTCT 60.142 41.667 4.94 0.00 0.00 3.41
19 20 4.114794 GGGTGATAAATTGCAAGCATGTC 58.885 43.478 4.94 2.23 0.00 3.06
20 21 3.770933 AGGGTGATAAATTGCAAGCATGT 59.229 39.130 4.94 0.00 0.00 3.21
21 22 4.365723 GAGGGTGATAAATTGCAAGCATG 58.634 43.478 4.94 0.00 0.00 4.06
22 23 3.067180 CGAGGGTGATAAATTGCAAGCAT 59.933 43.478 4.94 0.00 0.00 3.79
23 24 2.423185 CGAGGGTGATAAATTGCAAGCA 59.577 45.455 4.94 0.00 0.00 3.91
24 25 2.223572 CCGAGGGTGATAAATTGCAAGC 60.224 50.000 4.94 0.00 0.00 4.01
25 26 3.016736 ACCGAGGGTGATAAATTGCAAG 58.983 45.455 4.94 0.00 32.98 4.01
26 27 3.013921 GACCGAGGGTGATAAATTGCAA 58.986 45.455 0.00 0.00 35.25 4.08
27 28 2.238646 AGACCGAGGGTGATAAATTGCA 59.761 45.455 0.00 0.00 35.25 4.08
28 29 2.919228 AGACCGAGGGTGATAAATTGC 58.081 47.619 0.00 0.00 35.25 3.56
29 30 5.531122 TCTAGACCGAGGGTGATAAATTG 57.469 43.478 0.00 0.00 35.25 2.32
30 31 5.839063 TCATCTAGACCGAGGGTGATAAATT 59.161 40.000 0.00 0.00 35.25 1.82
31 32 5.394738 TCATCTAGACCGAGGGTGATAAAT 58.605 41.667 0.00 0.00 35.25 1.40
32 33 4.800023 TCATCTAGACCGAGGGTGATAAA 58.200 43.478 0.00 0.00 35.25 1.40
33 34 4.448720 TCATCTAGACCGAGGGTGATAA 57.551 45.455 0.00 0.00 35.25 1.75
34 35 4.659529 ATCATCTAGACCGAGGGTGATA 57.340 45.455 0.00 0.00 35.25 2.15
35 36 3.534357 ATCATCTAGACCGAGGGTGAT 57.466 47.619 0.00 0.00 35.25 3.06
36 37 3.314307 AATCATCTAGACCGAGGGTGA 57.686 47.619 0.00 0.00 35.25 4.02
37 38 3.384789 TCAAATCATCTAGACCGAGGGTG 59.615 47.826 0.00 0.00 35.25 4.61
38 39 3.639094 CTCAAATCATCTAGACCGAGGGT 59.361 47.826 0.00 0.00 39.44 4.34
39 40 3.891977 TCTCAAATCATCTAGACCGAGGG 59.108 47.826 0.00 0.00 0.00 4.30
40 41 5.521906 TTCTCAAATCATCTAGACCGAGG 57.478 43.478 0.00 0.00 0.00 4.63
41 42 6.475076 CAGTTTCTCAAATCATCTAGACCGAG 59.525 42.308 0.00 0.00 0.00 4.63
42 43 6.152831 TCAGTTTCTCAAATCATCTAGACCGA 59.847 38.462 0.00 0.00 0.00 4.69
43 44 6.333416 TCAGTTTCTCAAATCATCTAGACCG 58.667 40.000 0.00 0.00 0.00 4.79
44 45 7.065204 GGTTCAGTTTCTCAAATCATCTAGACC 59.935 40.741 0.00 0.00 0.00 3.85
45 46 7.604164 TGGTTCAGTTTCTCAAATCATCTAGAC 59.396 37.037 0.00 0.00 0.00 2.59
46 47 7.679783 TGGTTCAGTTTCTCAAATCATCTAGA 58.320 34.615 0.00 0.00 0.00 2.43
47 48 7.912056 TGGTTCAGTTTCTCAAATCATCTAG 57.088 36.000 0.00 0.00 0.00 2.43
48 49 7.148188 GCATGGTTCAGTTTCTCAAATCATCTA 60.148 37.037 0.00 0.00 0.00 1.98
49 50 6.349944 GCATGGTTCAGTTTCTCAAATCATCT 60.350 38.462 0.00 0.00 0.00 2.90
50 51 5.803967 GCATGGTTCAGTTTCTCAAATCATC 59.196 40.000 0.00 0.00 0.00 2.92
51 52 5.337009 GGCATGGTTCAGTTTCTCAAATCAT 60.337 40.000 0.00 0.00 0.00 2.45
52 53 4.022068 GGCATGGTTCAGTTTCTCAAATCA 60.022 41.667 0.00 0.00 0.00 2.57
53 54 4.488879 GGCATGGTTCAGTTTCTCAAATC 58.511 43.478 0.00 0.00 0.00 2.17
54 55 3.057315 CGGCATGGTTCAGTTTCTCAAAT 60.057 43.478 0.00 0.00 0.00 2.32
55 56 2.293122 CGGCATGGTTCAGTTTCTCAAA 59.707 45.455 0.00 0.00 0.00 2.69
56 57 1.879380 CGGCATGGTTCAGTTTCTCAA 59.121 47.619 0.00 0.00 0.00 3.02
57 58 1.522668 CGGCATGGTTCAGTTTCTCA 58.477 50.000 0.00 0.00 0.00 3.27
58 59 0.169009 GCGGCATGGTTCAGTTTCTC 59.831 55.000 0.00 0.00 0.00 2.87
59 60 0.537143 TGCGGCATGGTTCAGTTTCT 60.537 50.000 0.00 0.00 0.00 2.52
60 61 0.109597 CTGCGGCATGGTTCAGTTTC 60.110 55.000 1.75 0.00 0.00 2.78
61 62 0.537143 TCTGCGGCATGGTTCAGTTT 60.537 50.000 1.75 0.00 0.00 2.66
62 63 0.537143 TTCTGCGGCATGGTTCAGTT 60.537 50.000 1.75 0.00 0.00 3.16
63 64 1.073025 TTCTGCGGCATGGTTCAGT 59.927 52.632 1.75 0.00 0.00 3.41
64 65 1.236616 TGTTCTGCGGCATGGTTCAG 61.237 55.000 1.75 0.00 0.00 3.02
65 66 0.821301 TTGTTCTGCGGCATGGTTCA 60.821 50.000 1.75 0.00 0.00 3.18
66 67 0.313672 TTTGTTCTGCGGCATGGTTC 59.686 50.000 1.75 0.00 0.00 3.62
67 68 0.031994 GTTTGTTCTGCGGCATGGTT 59.968 50.000 1.75 0.00 0.00 3.67
68 69 1.106351 TGTTTGTTCTGCGGCATGGT 61.106 50.000 1.75 0.00 0.00 3.55
69 70 0.664166 GTGTTTGTTCTGCGGCATGG 60.664 55.000 1.75 0.00 0.00 3.66
70 71 0.030504 TGTGTTTGTTCTGCGGCATG 59.969 50.000 1.75 0.00 0.00 4.06
71 72 0.743688 TTGTGTTTGTTCTGCGGCAT 59.256 45.000 1.75 0.00 0.00 4.40
72 73 0.528017 TTTGTGTTTGTTCTGCGGCA 59.472 45.000 1.29 1.29 0.00 5.69
73 74 1.587946 CTTTTGTGTTTGTTCTGCGGC 59.412 47.619 0.00 0.00 0.00 6.53
74 75 3.143807 TCTTTTGTGTTTGTTCTGCGG 57.856 42.857 0.00 0.00 0.00 5.69
75 76 4.411327 TCTTCTTTTGTGTTTGTTCTGCG 58.589 39.130 0.00 0.00 0.00 5.18
76 77 7.059945 CGATATCTTCTTTTGTGTTTGTTCTGC 59.940 37.037 0.34 0.00 0.00 4.26
77 78 8.282592 TCGATATCTTCTTTTGTGTTTGTTCTG 58.717 33.333 0.34 0.00 0.00 3.02
78 79 8.378172 TCGATATCTTCTTTTGTGTTTGTTCT 57.622 30.769 0.34 0.00 0.00 3.01
79 80 9.445786 TTTCGATATCTTCTTTTGTGTTTGTTC 57.554 29.630 0.34 0.00 0.00 3.18
80 81 9.233232 GTTTCGATATCTTCTTTTGTGTTTGTT 57.767 29.630 0.34 0.00 0.00 2.83
81 82 7.860872 GGTTTCGATATCTTCTTTTGTGTTTGT 59.139 33.333 0.34 0.00 0.00 2.83
82 83 7.059488 CGGTTTCGATATCTTCTTTTGTGTTTG 59.941 37.037 0.34 0.00 39.00 2.93
83 84 7.075741 CGGTTTCGATATCTTCTTTTGTGTTT 58.924 34.615 0.34 0.00 39.00 2.83
84 85 6.204108 ACGGTTTCGATATCTTCTTTTGTGTT 59.796 34.615 0.34 0.00 40.11 3.32
85 86 5.699458 ACGGTTTCGATATCTTCTTTTGTGT 59.301 36.000 0.34 0.00 40.11 3.72
86 87 6.165659 ACGGTTTCGATATCTTCTTTTGTG 57.834 37.500 0.34 0.00 40.11 3.33
87 88 6.404712 GACGGTTTCGATATCTTCTTTTGT 57.595 37.500 0.34 0.00 40.11 2.83
102 103 1.209127 CCATTGGTGCGACGGTTTC 59.791 57.895 0.00 0.00 0.00 2.78
103 104 2.914908 GCCATTGGTGCGACGGTTT 61.915 57.895 4.26 0.00 0.00 3.27
104 105 2.457743 TAGCCATTGGTGCGACGGTT 62.458 55.000 4.26 0.00 0.00 4.44
105 106 2.252072 ATAGCCATTGGTGCGACGGT 62.252 55.000 4.26 0.00 0.00 4.83
106 107 1.498865 GATAGCCATTGGTGCGACGG 61.499 60.000 4.26 0.00 0.00 4.79
107 108 1.498865 GGATAGCCATTGGTGCGACG 61.499 60.000 4.26 0.00 0.00 5.12
108 109 0.463654 TGGATAGCCATTGGTGCGAC 60.464 55.000 0.00 0.00 39.92 5.19
109 110 0.254462 TTGGATAGCCATTGGTGCGA 59.746 50.000 0.00 0.00 45.46 5.10
110 111 1.321474 ATTGGATAGCCATTGGTGCG 58.679 50.000 0.00 0.00 45.46 5.34
111 112 2.804212 GCAATTGGATAGCCATTGGTGC 60.804 50.000 17.89 13.55 45.46 5.01
112 113 2.696707 AGCAATTGGATAGCCATTGGTG 59.303 45.455 19.19 9.58 45.46 4.17
113 114 2.961062 GAGCAATTGGATAGCCATTGGT 59.039 45.455 19.66 19.66 45.46 3.67
114 115 3.228453 AGAGCAATTGGATAGCCATTGG 58.772 45.455 17.89 7.81 45.46 3.16
115 116 3.255149 GGAGAGCAATTGGATAGCCATTG 59.745 47.826 0.00 9.00 45.46 2.82
116 117 3.139770 AGGAGAGCAATTGGATAGCCATT 59.860 43.478 0.00 0.00 45.46 3.16
117 118 2.715336 AGGAGAGCAATTGGATAGCCAT 59.285 45.455 0.00 0.00 45.46 4.40
118 119 2.130193 AGGAGAGCAATTGGATAGCCA 58.870 47.619 7.72 0.00 44.17 4.75
119 120 2.883386 CAAGGAGAGCAATTGGATAGCC 59.117 50.000 7.72 0.00 0.00 3.93
120 121 3.813443 TCAAGGAGAGCAATTGGATAGC 58.187 45.455 7.72 0.00 0.00 2.97
121 122 4.820716 CCTTCAAGGAGAGCAATTGGATAG 59.179 45.833 7.72 0.00 37.67 2.08
122 123 4.474651 TCCTTCAAGGAGAGCAATTGGATA 59.525 41.667 0.34 0.00 40.06 2.59
123 124 3.267812 TCCTTCAAGGAGAGCAATTGGAT 59.732 43.478 0.34 0.00 40.06 3.41
124 125 2.644299 TCCTTCAAGGAGAGCAATTGGA 59.356 45.455 0.34 0.00 40.06 3.53
125 126 2.751806 GTCCTTCAAGGAGAGCAATTGG 59.248 50.000 6.31 0.00 46.90 3.16
126 127 3.415212 TGTCCTTCAAGGAGAGCAATTG 58.585 45.455 6.31 0.00 46.90 2.32
127 128 3.795688 TGTCCTTCAAGGAGAGCAATT 57.204 42.857 6.31 0.00 46.90 2.32
128 129 4.384647 GGTATGTCCTTCAAGGAGAGCAAT 60.385 45.833 6.31 0.00 46.90 3.56
129 130 3.055094 GGTATGTCCTTCAAGGAGAGCAA 60.055 47.826 6.31 0.00 46.90 3.91
130 131 2.501723 GGTATGTCCTTCAAGGAGAGCA 59.498 50.000 6.31 1.44 46.90 4.26
131 132 2.501723 TGGTATGTCCTTCAAGGAGAGC 59.498 50.000 6.31 5.80 46.90 4.09
132 133 4.826274 TTGGTATGTCCTTCAAGGAGAG 57.174 45.455 6.31 0.00 46.90 3.20
133 134 4.141937 CGATTGGTATGTCCTTCAAGGAGA 60.142 45.833 6.31 5.93 46.90 3.71
134 135 4.122776 CGATTGGTATGTCCTTCAAGGAG 58.877 47.826 6.31 0.00 46.90 3.69
135 136 3.681594 GCGATTGGTATGTCCTTCAAGGA 60.682 47.826 0.34 0.34 43.43 3.36
136 137 2.614057 GCGATTGGTATGTCCTTCAAGG 59.386 50.000 0.00 0.00 36.46 3.61
137 138 2.614057 GGCGATTGGTATGTCCTTCAAG 59.386 50.000 0.00 0.00 37.07 3.02
138 139 2.026729 TGGCGATTGGTATGTCCTTCAA 60.027 45.455 0.00 0.00 37.07 2.69
139 140 1.557371 TGGCGATTGGTATGTCCTTCA 59.443 47.619 0.00 0.00 37.07 3.02
140 141 2.325583 TGGCGATTGGTATGTCCTTC 57.674 50.000 0.00 0.00 37.07 3.46
141 142 2.238646 TCTTGGCGATTGGTATGTCCTT 59.761 45.455 0.00 0.00 37.07 3.36
142 143 1.837439 TCTTGGCGATTGGTATGTCCT 59.163 47.619 0.00 0.00 37.07 3.85
143 144 1.940613 GTCTTGGCGATTGGTATGTCC 59.059 52.381 0.00 0.00 0.00 4.02
144 145 2.627945 TGTCTTGGCGATTGGTATGTC 58.372 47.619 0.00 0.00 0.00 3.06
145 146 2.779755 TGTCTTGGCGATTGGTATGT 57.220 45.000 0.00 0.00 0.00 2.29
146 147 5.749596 TTAATGTCTTGGCGATTGGTATG 57.250 39.130 0.00 0.00 0.00 2.39
147 148 6.601613 TCTTTTAATGTCTTGGCGATTGGTAT 59.398 34.615 0.00 0.00 0.00 2.73
148 149 5.941058 TCTTTTAATGTCTTGGCGATTGGTA 59.059 36.000 0.00 0.00 0.00 3.25
149 150 4.764823 TCTTTTAATGTCTTGGCGATTGGT 59.235 37.500 0.00 0.00 0.00 3.67
150 151 5.309323 TCTTTTAATGTCTTGGCGATTGG 57.691 39.130 0.00 0.00 0.00 3.16
151 152 4.795278 GCTCTTTTAATGTCTTGGCGATTG 59.205 41.667 0.00 0.00 0.00 2.67
152 153 4.142381 GGCTCTTTTAATGTCTTGGCGATT 60.142 41.667 0.00 0.00 0.00 3.34
153 154 3.378427 GGCTCTTTTAATGTCTTGGCGAT 59.622 43.478 0.00 0.00 0.00 4.58
154 155 2.747446 GGCTCTTTTAATGTCTTGGCGA 59.253 45.455 0.00 0.00 0.00 5.54
155 156 2.487762 TGGCTCTTTTAATGTCTTGGCG 59.512 45.455 0.00 0.00 0.00 5.69
156 157 4.519540 TTGGCTCTTTTAATGTCTTGGC 57.480 40.909 0.00 0.00 0.00 4.52
157 158 6.748132 TCTTTTGGCTCTTTTAATGTCTTGG 58.252 36.000 0.00 0.00 0.00 3.61
158 159 8.822652 AATCTTTTGGCTCTTTTAATGTCTTG 57.177 30.769 0.00 0.00 0.00 3.02
159 160 9.264719 CAAATCTTTTGGCTCTTTTAATGTCTT 57.735 29.630 0.00 0.00 0.00 3.01
160 161 8.641541 TCAAATCTTTTGGCTCTTTTAATGTCT 58.358 29.630 0.55 0.00 0.00 3.41
161 162 8.816640 TCAAATCTTTTGGCTCTTTTAATGTC 57.183 30.769 0.55 0.00 0.00 3.06
162 163 9.264719 CTTCAAATCTTTTGGCTCTTTTAATGT 57.735 29.630 0.55 0.00 0.00 2.71
163 164 9.480053 TCTTCAAATCTTTTGGCTCTTTTAATG 57.520 29.630 0.55 0.00 0.00 1.90
164 165 9.481340 GTCTTCAAATCTTTTGGCTCTTTTAAT 57.519 29.630 0.55 0.00 0.00 1.40
165 166 8.474025 TGTCTTCAAATCTTTTGGCTCTTTTAA 58.526 29.630 0.55 0.00 0.00 1.52
166 167 7.920682 GTGTCTTCAAATCTTTTGGCTCTTTTA 59.079 33.333 0.55 0.00 0.00 1.52
167 168 6.758416 GTGTCTTCAAATCTTTTGGCTCTTTT 59.242 34.615 0.55 0.00 0.00 2.27
168 169 6.097412 AGTGTCTTCAAATCTTTTGGCTCTTT 59.903 34.615 0.55 0.00 0.00 2.52
169 170 5.595952 AGTGTCTTCAAATCTTTTGGCTCTT 59.404 36.000 0.55 0.00 0.00 2.85
170 171 5.136105 AGTGTCTTCAAATCTTTTGGCTCT 58.864 37.500 0.55 0.00 0.00 4.09
171 172 5.444663 AGTGTCTTCAAATCTTTTGGCTC 57.555 39.130 0.55 0.00 0.00 4.70
172 173 4.279420 GGAGTGTCTTCAAATCTTTTGGCT 59.721 41.667 0.55 0.00 0.00 4.75
173 174 4.550422 GGAGTGTCTTCAAATCTTTTGGC 58.450 43.478 0.55 0.00 0.00 4.52
174 175 4.787598 CGGAGTGTCTTCAAATCTTTTGG 58.212 43.478 0.55 0.00 0.00 3.28
175 176 4.222114 GCGGAGTGTCTTCAAATCTTTTG 58.778 43.478 0.00 0.00 0.00 2.44
176 177 3.253432 GGCGGAGTGTCTTCAAATCTTTT 59.747 43.478 0.00 0.00 0.00 2.27
177 178 2.814336 GGCGGAGTGTCTTCAAATCTTT 59.186 45.455 0.00 0.00 0.00 2.52
178 179 2.224523 TGGCGGAGTGTCTTCAAATCTT 60.225 45.455 0.00 0.00 0.00 2.40
179 180 1.347707 TGGCGGAGTGTCTTCAAATCT 59.652 47.619 0.00 0.00 0.00 2.40
180 181 1.464997 GTGGCGGAGTGTCTTCAAATC 59.535 52.381 0.00 0.00 0.00 2.17
181 182 1.523758 GTGGCGGAGTGTCTTCAAAT 58.476 50.000 0.00 0.00 0.00 2.32
182 183 0.534203 GGTGGCGGAGTGTCTTCAAA 60.534 55.000 0.00 0.00 0.00 2.69
183 184 1.070786 GGTGGCGGAGTGTCTTCAA 59.929 57.895 0.00 0.00 0.00 2.69
184 185 2.741092 GGTGGCGGAGTGTCTTCA 59.259 61.111 0.00 0.00 0.00 3.02
185 186 2.432628 CGGTGGCGGAGTGTCTTC 60.433 66.667 0.00 0.00 0.00 2.87
186 187 4.003788 CCGGTGGCGGAGTGTCTT 62.004 66.667 0.00 0.00 0.00 3.01
187 188 4.988716 TCCGGTGGCGGAGTGTCT 62.989 66.667 0.00 0.00 33.62 3.41
188 189 1.952102 TAATCCGGTGGCGGAGTGTC 61.952 60.000 0.00 0.00 41.77 3.67
189 190 1.956629 CTAATCCGGTGGCGGAGTGT 61.957 60.000 0.00 0.00 41.77 3.55
190 191 1.227263 CTAATCCGGTGGCGGAGTG 60.227 63.158 0.00 0.00 41.77 3.51
191 192 1.380785 TCTAATCCGGTGGCGGAGT 60.381 57.895 0.00 0.00 41.77 3.85
192 193 1.067582 GTCTAATCCGGTGGCGGAG 59.932 63.158 0.00 0.00 41.77 4.63
193 194 2.777972 CGTCTAATCCGGTGGCGGA 61.778 63.158 0.00 0.00 42.75 5.54
194 195 2.279252 CGTCTAATCCGGTGGCGG 60.279 66.667 0.00 0.00 0.00 6.13
195 196 1.588139 GACGTCTAATCCGGTGGCG 60.588 63.158 8.70 6.66 0.00 5.69
196 197 0.175073 AAGACGTCTAATCCGGTGGC 59.825 55.000 20.39 0.00 0.00 5.01
197 198 1.475280 TGAAGACGTCTAATCCGGTGG 59.525 52.381 20.39 0.00 0.00 4.61
198 199 2.933495 TGAAGACGTCTAATCCGGTG 57.067 50.000 20.39 0.00 0.00 4.94
199 200 2.165845 CCTTGAAGACGTCTAATCCGGT 59.834 50.000 20.39 0.00 0.00 5.28
200 201 2.165845 ACCTTGAAGACGTCTAATCCGG 59.834 50.000 20.39 17.30 0.00 5.14
201 202 3.505464 ACCTTGAAGACGTCTAATCCG 57.495 47.619 20.39 9.27 0.00 4.18
202 203 4.643784 TCCTACCTTGAAGACGTCTAATCC 59.356 45.833 20.39 9.17 0.00 3.01
203 204 5.831702 TCCTACCTTGAAGACGTCTAATC 57.168 43.478 20.39 14.37 0.00 1.75
204 205 5.950549 TCTTCCTACCTTGAAGACGTCTAAT 59.049 40.000 20.39 3.44 42.38 1.73
205 206 5.319453 TCTTCCTACCTTGAAGACGTCTAA 58.681 41.667 20.39 9.63 42.38 2.10
206 207 4.914983 TCTTCCTACCTTGAAGACGTCTA 58.085 43.478 20.39 0.04 42.38 2.59
207 208 3.759618 CTCTTCCTACCTTGAAGACGTCT 59.240 47.826 13.58 13.58 42.38 4.18
208 209 3.757493 TCTCTTCCTACCTTGAAGACGTC 59.243 47.826 7.70 7.70 42.38 4.34
209 210 3.506844 GTCTCTTCCTACCTTGAAGACGT 59.493 47.826 0.00 0.00 42.38 4.34
210 211 3.119424 GGTCTCTTCCTACCTTGAAGACG 60.119 52.174 0.00 0.00 42.38 4.18
211 212 3.833070 TGGTCTCTTCCTACCTTGAAGAC 59.167 47.826 0.00 0.00 42.38 3.01
212 213 4.127918 TGGTCTCTTCCTACCTTGAAGA 57.872 45.455 0.00 3.03 44.40 2.87
213 214 4.891992 TTGGTCTCTTCCTACCTTGAAG 57.108 45.455 0.00 0.00 40.45 3.02
214 215 4.410883 TGTTTGGTCTCTTCCTACCTTGAA 59.589 41.667 0.00 0.00 36.67 2.69
215 216 3.971305 TGTTTGGTCTCTTCCTACCTTGA 59.029 43.478 0.00 0.00 36.67 3.02
216 217 4.351874 TGTTTGGTCTCTTCCTACCTTG 57.648 45.455 0.00 0.00 36.67 3.61
217 218 5.382664 TTTGTTTGGTCTCTTCCTACCTT 57.617 39.130 0.00 0.00 36.67 3.50
218 219 5.310857 AGATTTGTTTGGTCTCTTCCTACCT 59.689 40.000 0.00 0.00 36.67 3.08
219 220 5.561679 AGATTTGTTTGGTCTCTTCCTACC 58.438 41.667 0.00 0.00 36.24 3.18
220 221 8.794335 ATAAGATTTGTTTGGTCTCTTCCTAC 57.206 34.615 0.00 0.00 0.00 3.18
221 222 9.449719 GAATAAGATTTGTTTGGTCTCTTCCTA 57.550 33.333 0.00 0.00 0.00 2.94
222 223 7.394641 GGAATAAGATTTGTTTGGTCTCTTCCT 59.605 37.037 0.00 0.00 34.33 3.36
223 224 7.176690 TGGAATAAGATTTGTTTGGTCTCTTCC 59.823 37.037 0.00 0.00 35.91 3.46
224 225 8.110860 TGGAATAAGATTTGTTTGGTCTCTTC 57.889 34.615 0.00 0.00 0.00 2.87
225 226 8.477419 TTGGAATAAGATTTGTTTGGTCTCTT 57.523 30.769 0.00 0.00 0.00 2.85
226 227 8.655935 ATTGGAATAAGATTTGTTTGGTCTCT 57.344 30.769 0.00 0.00 0.00 3.10
229 230 9.087424 GCTTATTGGAATAAGATTTGTTTGGTC 57.913 33.333 19.08 0.00 46.87 4.02
230 231 8.040727 GGCTTATTGGAATAAGATTTGTTTGGT 58.959 33.333 19.08 0.00 46.87 3.67
231 232 8.040132 TGGCTTATTGGAATAAGATTTGTTTGG 58.960 33.333 19.08 0.00 46.87 3.28
232 233 9.603921 ATGGCTTATTGGAATAAGATTTGTTTG 57.396 29.630 19.08 0.00 46.87 2.93
233 234 9.822185 GATGGCTTATTGGAATAAGATTTGTTT 57.178 29.630 19.08 1.25 46.87 2.83
234 235 8.137437 CGATGGCTTATTGGAATAAGATTTGTT 58.863 33.333 19.08 2.05 46.87 2.83
235 236 7.651808 CGATGGCTTATTGGAATAAGATTTGT 58.348 34.615 19.08 4.03 46.87 2.83
236 237 6.583806 GCGATGGCTTATTGGAATAAGATTTG 59.416 38.462 19.08 9.67 46.87 2.32
237 238 6.294731 GGCGATGGCTTATTGGAATAAGATTT 60.295 38.462 19.08 5.87 46.87 2.17
238 239 5.183904 GGCGATGGCTTATTGGAATAAGATT 59.816 40.000 19.08 6.14 46.87 2.40
239 240 4.702131 GGCGATGGCTTATTGGAATAAGAT 59.298 41.667 19.08 7.78 46.87 2.40
240 241 4.072131 GGCGATGGCTTATTGGAATAAGA 58.928 43.478 19.08 3.91 46.87 2.10
241 242 3.120199 CGGCGATGGCTTATTGGAATAAG 60.120 47.826 0.00 12.86 46.72 1.73
242 243 2.811431 CGGCGATGGCTTATTGGAATAA 59.189 45.455 0.00 0.00 39.81 1.40
243 244 2.422597 CGGCGATGGCTTATTGGAATA 58.577 47.619 0.00 0.00 39.81 1.75
244 245 1.238439 CGGCGATGGCTTATTGGAAT 58.762 50.000 0.00 0.00 39.81 3.01
245 246 1.444119 GCGGCGATGGCTTATTGGAA 61.444 55.000 12.98 0.00 39.81 3.53
246 247 1.891919 GCGGCGATGGCTTATTGGA 60.892 57.895 12.98 0.00 39.81 3.53
247 248 0.602638 TAGCGGCGATGGCTTATTGG 60.603 55.000 12.98 0.00 41.80 3.16
248 249 0.512952 GTAGCGGCGATGGCTTATTG 59.487 55.000 12.98 0.00 41.80 1.90
249 250 0.602905 GGTAGCGGCGATGGCTTATT 60.603 55.000 12.98 0.00 41.80 1.40
250 251 1.004918 GGTAGCGGCGATGGCTTAT 60.005 57.895 12.98 0.00 41.80 1.73
251 252 2.420043 GGTAGCGGCGATGGCTTA 59.580 61.111 12.98 0.00 41.80 3.09
252 253 4.891727 CGGTAGCGGCGATGGCTT 62.892 66.667 12.98 0.00 41.80 4.35
256 257 4.891727 AAGGCGGTAGCGGCGATG 62.892 66.667 31.02 0.00 46.35 3.84
257 258 4.891727 CAAGGCGGTAGCGGCGAT 62.892 66.667 31.02 22.53 46.35 4.58
260 261 4.752879 TGACAAGGCGGTAGCGGC 62.753 66.667 30.73 30.73 46.35 6.53
261 262 1.449601 ATTGACAAGGCGGTAGCGG 60.450 57.895 17.08 1.36 46.35 5.52
262 263 1.019278 ACATTGACAAGGCGGTAGCG 61.019 55.000 10.57 10.57 46.35 4.26
263 264 2.018542 TACATTGACAAGGCGGTAGC 57.981 50.000 0.00 0.00 44.18 3.58
264 265 3.749088 TGTTTACATTGACAAGGCGGTAG 59.251 43.478 0.00 0.00 0.00 3.18
265 266 3.741249 TGTTTACATTGACAAGGCGGTA 58.259 40.909 0.00 0.00 0.00 4.02
266 267 2.577700 TGTTTACATTGACAAGGCGGT 58.422 42.857 0.00 0.00 0.00 5.68
267 268 3.634568 TTGTTTACATTGACAAGGCGG 57.365 42.857 0.00 0.00 32.43 6.13
268 269 4.208253 GGTTTTGTTTACATTGACAAGGCG 59.792 41.667 0.00 0.00 37.12 5.52
269 270 5.356426 AGGTTTTGTTTACATTGACAAGGC 58.644 37.500 0.00 0.00 37.12 4.35
303 304 2.514803 CCGTCTGGTCATTCCCTTTTT 58.485 47.619 0.00 0.00 34.77 1.94
304 305 1.271926 CCCGTCTGGTCATTCCCTTTT 60.272 52.381 0.00 0.00 34.77 2.27
305 306 0.328258 CCCGTCTGGTCATTCCCTTT 59.672 55.000 0.00 0.00 34.77 3.11
306 307 1.991230 CCCGTCTGGTCATTCCCTT 59.009 57.895 0.00 0.00 34.77 3.95
307 308 3.727387 CCCGTCTGGTCATTCCCT 58.273 61.111 0.00 0.00 34.77 4.20
316 317 0.900647 AGAAGTGGAGACCCGTCTGG 60.901 60.000 1.17 0.00 40.61 3.86
317 318 0.528470 GAGAAGTGGAGACCCGTCTG 59.472 60.000 1.17 0.00 40.61 3.51
318 319 0.406361 AGAGAAGTGGAGACCCGTCT 59.594 55.000 0.00 0.00 43.78 4.18
319 320 1.067495 CAAGAGAAGTGGAGACCCGTC 60.067 57.143 0.00 0.00 34.29 4.79
320 321 0.969894 CAAGAGAAGTGGAGACCCGT 59.030 55.000 0.00 0.00 34.29 5.28
321 322 0.390472 GCAAGAGAAGTGGAGACCCG 60.390 60.000 0.00 0.00 34.29 5.28
322 323 0.035915 GGCAAGAGAAGTGGAGACCC 60.036 60.000 0.00 0.00 0.00 4.46
323 324 0.390472 CGGCAAGAGAAGTGGAGACC 60.390 60.000 0.00 0.00 0.00 3.85
324 325 1.016653 GCGGCAAGAGAAGTGGAGAC 61.017 60.000 0.00 0.00 0.00 3.36
325 326 1.188219 AGCGGCAAGAGAAGTGGAGA 61.188 55.000 1.45 0.00 0.00 3.71
326 327 1.018226 CAGCGGCAAGAGAAGTGGAG 61.018 60.000 1.45 0.00 0.00 3.86
327 328 1.004560 CAGCGGCAAGAGAAGTGGA 60.005 57.895 1.45 0.00 0.00 4.02
328 329 1.004560 TCAGCGGCAAGAGAAGTGG 60.005 57.895 1.45 0.00 0.00 4.00
329 330 1.621301 CGTCAGCGGCAAGAGAAGTG 61.621 60.000 1.45 0.00 0.00 3.16
330 331 1.373497 CGTCAGCGGCAAGAGAAGT 60.373 57.895 1.45 0.00 0.00 3.01
331 332 0.667487 TTCGTCAGCGGCAAGAGAAG 60.667 55.000 1.45 0.00 38.89 2.85
332 333 0.037326 ATTCGTCAGCGGCAAGAGAA 60.037 50.000 1.45 3.13 38.89 2.87
333 334 0.458543 GATTCGTCAGCGGCAAGAGA 60.459 55.000 1.45 0.00 38.89 3.10
334 335 1.424493 GGATTCGTCAGCGGCAAGAG 61.424 60.000 1.45 0.00 38.89 2.85
335 336 1.447838 GGATTCGTCAGCGGCAAGA 60.448 57.895 1.45 0.00 38.89 3.02
336 337 2.802667 CGGATTCGTCAGCGGCAAG 61.803 63.158 1.45 0.00 38.89 4.01
337 338 2.813474 CGGATTCGTCAGCGGCAA 60.813 61.111 1.45 0.00 38.89 4.52
338 339 4.812476 CCGGATTCGTCAGCGGCA 62.812 66.667 0.00 0.00 38.89 5.69
340 341 3.833645 TCCCGGATTCGTCAGCGG 61.834 66.667 0.73 0.00 38.89 5.52
341 342 2.582498 GTCCCGGATTCGTCAGCG 60.582 66.667 0.73 0.00 39.92 5.18
342 343 2.582498 CGTCCCGGATTCGTCAGC 60.582 66.667 0.73 0.00 33.95 4.26
353 354 3.665675 CTTGCTCTTCCCCGTCCCG 62.666 68.421 0.00 0.00 0.00 5.14
354 355 2.269241 CTTGCTCTTCCCCGTCCC 59.731 66.667 0.00 0.00 0.00 4.46
355 356 2.269241 CCTTGCTCTTCCCCGTCC 59.731 66.667 0.00 0.00 0.00 4.79
356 357 2.269241 CCCTTGCTCTTCCCCGTC 59.731 66.667 0.00 0.00 0.00 4.79
357 358 3.330720 CCCCTTGCTCTTCCCCGT 61.331 66.667 0.00 0.00 0.00 5.28
358 359 3.009115 TCCCCTTGCTCTTCCCCG 61.009 66.667 0.00 0.00 0.00 5.73
359 360 2.684499 CCTCCCCTTGCTCTTCCCC 61.684 68.421 0.00 0.00 0.00 4.81
360 361 2.684499 CCCTCCCCTTGCTCTTCCC 61.684 68.421 0.00 0.00 0.00 3.97
361 362 2.684499 CCCCTCCCCTTGCTCTTCC 61.684 68.421 0.00 0.00 0.00 3.46
362 363 2.684499 CCCCCTCCCCTTGCTCTTC 61.684 68.421 0.00 0.00 0.00 2.87
363 364 2.615288 CCCCCTCCCCTTGCTCTT 60.615 66.667 0.00 0.00 0.00 2.85
396 397 4.717313 AAGTTTCTCCCCGCCGCC 62.717 66.667 0.00 0.00 0.00 6.13
397 398 3.431725 CAAGTTTCTCCCCGCCGC 61.432 66.667 0.00 0.00 0.00 6.53
398 399 2.746277 CCAAGTTTCTCCCCGCCG 60.746 66.667 0.00 0.00 0.00 6.46
399 400 1.971695 CACCAAGTTTCTCCCCGCC 60.972 63.158 0.00 0.00 0.00 6.13
400 401 1.072505 TCACCAAGTTTCTCCCCGC 59.927 57.895 0.00 0.00 0.00 6.13
401 402 0.949105 CGTCACCAAGTTTCTCCCCG 60.949 60.000 0.00 0.00 0.00 5.73
402 403 0.605589 CCGTCACCAAGTTTCTCCCC 60.606 60.000 0.00 0.00 0.00 4.81
403 404 1.235281 GCCGTCACCAAGTTTCTCCC 61.235 60.000 0.00 0.00 0.00 4.30
421 422 2.668550 GACTGACCCAACCCACGC 60.669 66.667 0.00 0.00 0.00 5.34
428 429 3.593442 ATCAAAGGTTGACTGACCCAA 57.407 42.857 0.00 0.00 43.48 4.12
429 430 4.715534 TTATCAAAGGTTGACTGACCCA 57.284 40.909 0.00 0.00 43.48 4.51
430 431 6.013842 CTTTTATCAAAGGTTGACTGACCC 57.986 41.667 0.00 0.00 43.48 4.46
501 504 1.003718 GACGGTGGAAGACCTTGGG 60.004 63.158 0.00 0.00 43.55 4.12
529 534 1.268640 GGATTACGACTCGACTGGCTC 60.269 57.143 5.20 0.00 0.00 4.70
532 537 2.014857 TGAGGATTACGACTCGACTGG 58.985 52.381 5.20 0.00 36.53 4.00
538 543 3.065648 GTGAGGTCTGAGGATTACGACTC 59.934 52.174 0.00 0.00 0.00 3.36
544 549 4.264397 TGAGGAAGTGAGGTCTGAGGATTA 60.264 45.833 0.00 0.00 0.00 1.75
545 550 3.103742 GAGGAAGTGAGGTCTGAGGATT 58.896 50.000 0.00 0.00 0.00 3.01
553 558 0.109039 GCGAGTGAGGAAGTGAGGTC 60.109 60.000 0.00 0.00 0.00 3.85
584 589 1.801309 GAATCCGGAGCGAGAGGAGG 61.801 65.000 11.34 0.00 37.49 4.30
602 607 0.547712 CCTTCTCTTGTGGGGAGGGA 60.548 60.000 0.00 0.00 0.00 4.20
611 616 1.674057 CGGACCTGCCTTCTCTTGT 59.326 57.895 0.00 0.00 0.00 3.16
613 618 2.960688 GCCGGACCTGCCTTCTCTT 61.961 63.158 5.05 0.00 0.00 2.85
678 690 2.279517 CGTATCGACTGGCCTGCC 60.280 66.667 9.95 0.00 0.00 4.85
679 691 2.962253 GCGTATCGACTGGCCTGC 60.962 66.667 9.95 1.84 0.00 4.85
680 692 2.279517 GGCGTATCGACTGGCCTG 60.280 66.667 8.29 8.29 42.29 4.85
681 693 2.442272 AGGCGTATCGACTGGCCT 60.442 61.111 16.72 16.72 46.62 5.19
702 714 4.025401 GTTGGTGTTCAGGCGCCG 62.025 66.667 23.20 16.49 41.67 6.46
703 715 3.670377 GGTTGGTGTTCAGGCGCC 61.670 66.667 21.89 21.89 39.37 6.53
704 716 2.130073 GAAGGTTGGTGTTCAGGCGC 62.130 60.000 0.00 0.00 0.00 6.53
705 717 1.841663 CGAAGGTTGGTGTTCAGGCG 61.842 60.000 0.00 0.00 0.00 5.52
706 718 0.818040 ACGAAGGTTGGTGTTCAGGC 60.818 55.000 0.00 0.00 0.00 4.85
707 719 1.226746 GACGAAGGTTGGTGTTCAGG 58.773 55.000 0.00 0.00 0.00 3.86
708 720 1.597663 GTGACGAAGGTTGGTGTTCAG 59.402 52.381 0.00 0.00 0.00 3.02
778 790 2.233271 TGAGAAGCAAGAAGGCAAAGG 58.767 47.619 0.00 0.00 35.83 3.11
787 801 1.542915 GCAAAGGCATGAGAAGCAAGA 59.457 47.619 0.00 0.00 40.72 3.02
792 806 1.446907 ACGAGCAAAGGCATGAGAAG 58.553 50.000 0.00 0.00 44.61 2.85
812 826 2.385013 TAAGCTCGATTCAGCAAGCA 57.615 45.000 9.67 0.00 42.40 3.91
834 848 1.001393 TTCCTGGGGAATGAACGCC 60.001 57.895 0.00 0.00 36.71 5.68
838 852 1.886222 CGTTGCTTCCTGGGGAATGAA 60.886 52.381 0.00 0.00 41.23 2.57
839 853 0.322456 CGTTGCTTCCTGGGGAATGA 60.322 55.000 0.00 0.00 41.23 2.57
842 856 1.072505 GACGTTGCTTCCTGGGGAA 59.927 57.895 0.00 0.00 39.66 3.97
851 865 3.123674 GTCAGATCGGACGTTGCTT 57.876 52.632 10.29 0.00 0.00 3.91
873 887 4.762251 CGATCTGAGGGGAAGTTTCTTTTT 59.238 41.667 0.00 0.00 0.00 1.94
889 907 2.415608 GGCCGGACAGTCGATCTGA 61.416 63.158 5.05 0.00 46.27 3.27
959 977 0.886490 GTCCACCTTGACCAGCTGTG 60.886 60.000 13.81 6.81 0.00 3.66
960 978 1.451936 GTCCACCTTGACCAGCTGT 59.548 57.895 13.81 0.11 0.00 4.40
975 993 2.035442 GGTCAAGCTGAAGCCGTCC 61.035 63.158 0.00 0.00 43.38 4.79
995 1013 1.899437 ATCGTTGTCGCCCATGGTCT 61.899 55.000 11.73 0.00 36.96 3.85
1050 1068 3.318313 AGGATAGACACGGAATTCCCAT 58.682 45.455 19.01 4.43 34.14 4.00
1057 1075 4.442893 CCAGCAATTAGGATAGACACGGAA 60.443 45.833 0.00 0.00 0.00 4.30
1081 1099 1.475403 TCCACTGCTACAGAGTAGCC 58.525 55.000 22.21 8.57 38.90 3.93
1093 1111 1.268079 GAGAAAGGCAAGTTCCACTGC 59.732 52.381 0.00 0.00 0.00 4.40
1094 1112 2.551459 CTGAGAAAGGCAAGTTCCACTG 59.449 50.000 0.00 0.00 0.00 3.66
1101 1119 1.683385 GGTTTGCTGAGAAAGGCAAGT 59.317 47.619 0.00 0.00 46.75 3.16
1186 1204 2.461110 CGACCAACCGGCAGCATAC 61.461 63.158 0.00 0.00 34.57 2.39
1189 1207 3.950794 GATCGACCAACCGGCAGCA 62.951 63.158 0.00 0.00 34.57 4.41
1210 1228 3.984193 ATGGCTCAAGCGTCCCTGC 62.984 63.158 0.00 0.00 43.26 4.85
1217 1235 1.298157 TTCGTTGGATGGCTCAAGCG 61.298 55.000 0.00 0.00 43.26 4.68
1240 1258 2.280797 GAACACCCGCTGCTCACA 60.281 61.111 0.00 0.00 0.00 3.58
1287 1305 7.278868 GCTGCTAGCTTACTTCTCAAGATAAAA 59.721 37.037 17.23 0.00 38.45 1.52
1290 1308 5.360999 TGCTGCTAGCTTACTTCTCAAGATA 59.639 40.000 17.23 0.00 42.97 1.98
1294 1312 3.961480 TGCTGCTAGCTTACTTCTCAA 57.039 42.857 17.23 0.00 42.97 3.02
1303 1324 3.390639 AGATAACCTGATGCTGCTAGCTT 59.609 43.478 17.23 0.61 42.97 3.74
1429 1468 1.071385 CAGGAGTTCAGCAAGGTGTCT 59.929 52.381 0.00 0.19 0.00 3.41
1451 1490 1.965754 ATCTGCTCCCGTCTTGCTCC 61.966 60.000 0.00 0.00 0.00 4.70
1487 1526 0.936297 CGCAGCAAAAGACTTGCCAC 60.936 55.000 5.87 0.00 45.98 5.01
1563 1602 1.933181 CGTGCGCAATTCTCCTTCATA 59.067 47.619 14.00 0.00 0.00 2.15
1596 1635 1.450134 CGCAGCCTGCATGTCCTTA 60.450 57.895 18.21 0.00 45.36 2.69
1624 1663 2.231235 TGTAGATGAAGTGAAGCAGCGA 59.769 45.455 0.00 0.00 0.00 4.93
1728 1767 0.898320 GCTTGAGCCTGTCTAGGTCA 59.102 55.000 0.00 0.00 46.41 4.02
1730 1769 0.901124 CAGCTTGAGCCTGTCTAGGT 59.099 55.000 0.00 0.00 46.41 3.08
1734 1773 0.835543 AGACCAGCTTGAGCCTGTCT 60.836 55.000 15.32 15.32 43.26 3.41
1750 1789 2.479656 CAGAGAGCTTGCTTTCACAGAC 59.520 50.000 14.19 0.00 0.00 3.51
1864 1903 4.817517 TCAAGAACCTCACGATTCCTAAC 58.182 43.478 0.00 0.00 0.00 2.34
1957 1996 0.946221 CCCACACGCAGACTTGACTC 60.946 60.000 0.00 0.00 0.00 3.36
2030 2077 6.090783 CACAAACAGAGACTACGCATTACTA 58.909 40.000 0.00 0.00 0.00 1.82
2034 2081 2.480419 GCACAAACAGAGACTACGCATT 59.520 45.455 0.00 0.00 0.00 3.56
2056 2103 3.769739 ATCATACCACATACACGGCAT 57.230 42.857 0.00 0.00 0.00 4.40
2081 2128 9.502091 TTGTTAAGACATGACATAGCTTAACTT 57.498 29.630 29.30 15.09 45.37 2.66
2114 2161 3.065648 CAGAGACTAACCTACCGAGCTTC 59.934 52.174 0.00 0.00 0.00 3.86
2159 2492 8.387813 TCAGGGGAACACAAGTTACTAAAATAT 58.612 33.333 0.00 0.00 38.69 1.28
2188 2524 7.823799 ACATTGAAATCATGGACCATTTAAACC 59.176 33.333 3.52 0.00 0.00 3.27
2194 2530 6.155565 ACATCACATTGAAATCATGGACCATT 59.844 34.615 3.52 0.00 0.00 3.16
2198 2534 9.590451 AAATTACATCACATTGAAATCATGGAC 57.410 29.630 0.00 0.00 0.00 4.02
2250 3388 7.547370 GCAGTTATAAGCATACAAGGAGATAGG 59.453 40.741 0.00 0.00 0.00 2.57
2312 3470 6.042093 ACTCTTTAACATCACTGGACAGAAGA 59.958 38.462 6.29 4.22 0.00 2.87
2320 3478 5.551233 TCCTTCACTCTTTAACATCACTGG 58.449 41.667 0.00 0.00 0.00 4.00
2367 4206 1.876156 CTGTGGCTGAAGGTGAGAAAC 59.124 52.381 0.00 0.00 0.00 2.78
2411 4250 1.202964 TCACTAGAACTCCCGGTGTGA 60.203 52.381 0.00 0.00 0.00 3.58
2428 4267 7.125053 TCCCAAATTTGATAATAAGGGGTTCAC 59.875 37.037 19.86 0.00 38.00 3.18
2470 4309 5.519206 GCGACTAATACTACAAAGTGGAAGG 59.481 44.000 0.00 0.00 36.36 3.46
2481 4320 7.201145 TCATCTTCCTTTGCGACTAATACTAC 58.799 38.462 0.00 0.00 0.00 2.73
2486 4325 8.562892 CATAAATCATCTTCCTTTGCGACTAAT 58.437 33.333 0.00 0.00 0.00 1.73
2517 4360 3.939592 GGTGTTGACTATTGGCTTAGACC 59.060 47.826 2.69 0.00 0.00 3.85
2544 4387 1.528076 AATGCAGACCACAACCGCA 60.528 52.632 0.00 0.00 36.95 5.69
2546 4389 1.518325 TACAATGCAGACCACAACCG 58.482 50.000 0.00 0.00 0.00 4.44
2552 4395 7.929941 TGTACAAAATATACAATGCAGACCA 57.070 32.000 0.00 0.00 29.59 4.02
2672 4526 4.590850 ACCTTCAATCTCCAAACAAAGC 57.409 40.909 0.00 0.00 0.00 3.51
2674 4528 5.534654 CAGGTACCTTCAATCTCCAAACAAA 59.465 40.000 13.15 0.00 0.00 2.83
2679 4533 2.642311 TGCAGGTACCTTCAATCTCCAA 59.358 45.455 13.15 0.00 0.00 3.53
2713 4567 9.083080 GTAGTGCTCAAAAGTAAACAAAACAAT 57.917 29.630 0.00 0.00 0.00 2.71
2714 4568 8.301002 AGTAGTGCTCAAAAGTAAACAAAACAA 58.699 29.630 0.00 0.00 0.00 2.83
2715 4569 7.822658 AGTAGTGCTCAAAAGTAAACAAAACA 58.177 30.769 0.00 0.00 0.00 2.83
2716 4570 9.218359 GTAGTAGTGCTCAAAAGTAAACAAAAC 57.782 33.333 0.00 0.00 0.00 2.43
2772 4637 7.926018 ACCCAATTTCTCAAAGTTTATGTGTTC 59.074 33.333 0.00 0.00 0.00 3.18
2797 4662 2.285256 CGCTGCGTTGAAGACATATGAC 60.285 50.000 14.93 2.89 0.00 3.06
2818 4683 2.287849 GCGTCTATAAGGTAACCCCGTC 60.288 54.545 0.00 0.00 38.74 4.79
2835 4700 2.061740 ACACTAGAGAAAACCGCGTC 57.938 50.000 4.92 0.00 0.00 5.19
2837 4702 2.281762 GCATACACTAGAGAAAACCGCG 59.718 50.000 0.00 0.00 0.00 6.46
2839 4704 4.124851 AGGCATACACTAGAGAAAACCG 57.875 45.455 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.