Multiple sequence alignment - TraesCS7D01G458400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G458400 chr7D 100.000 4994 0 0 1 4994 576281187 576286180 0.000000e+00 9223.0
1 TraesCS7D01G458400 chr7D 76.233 446 106 0 1583 2028 142610841 142611286 2.320000e-58 237.0
2 TraesCS7D01G458400 chr7D 93.750 64 2 2 2275 2337 576283312 576283374 1.480000e-15 95.3
3 TraesCS7D01G458400 chr7D 93.750 64 2 2 2126 2188 576283461 576283523 1.480000e-15 95.3
4 TraesCS7D01G458400 chr7D 100.000 51 0 0 2351 2401 576283487 576283537 1.480000e-15 95.3
5 TraesCS7D01G458400 chr7D 100.000 51 0 0 2301 2351 576283537 576283587 1.480000e-15 95.3
6 TraesCS7D01G458400 chr7D 100.000 38 0 0 2350 2387 576283337 576283374 2.490000e-08 71.3
7 TraesCS7D01G458400 chr7D 100.000 38 0 0 2151 2188 576283536 576283573 2.490000e-08 71.3
8 TraesCS7D01G458400 chr7B 95.974 2484 70 16 2525 4994 638883710 638886177 0.000000e+00 4006.0
9 TraesCS7D01G458400 chr7B 87.002 2285 167 83 3 2235 638881546 638883752 0.000000e+00 2455.0
10 TraesCS7D01G458400 chr7B 81.509 265 29 13 4431 4678 637223359 637223098 3.050000e-47 200.0
11 TraesCS7D01G458400 chr7A 88.582 2242 148 55 8 2235 667210294 667212441 0.000000e+00 2623.0
12 TraesCS7D01G458400 chr7A 92.767 1742 80 17 2677 4376 667212861 667214598 0.000000e+00 2477.0
13 TraesCS7D01G458400 chr7A 85.687 531 71 3 653 1183 104516384 104515859 5.650000e-154 555.0
14 TraesCS7D01G458400 chr7A 86.667 330 22 11 4678 4994 667214605 667214925 3.700000e-91 346.0
15 TraesCS7D01G458400 chr7A 75.579 475 114 2 1555 2028 144603848 144604321 3.010000e-57 233.0
16 TraesCS7D01G458400 chr7A 93.985 133 5 1 2525 2654 667212399 667212531 1.100000e-46 198.0
17 TraesCS7D01G458400 chr7A 94.872 78 3 1 2275 2351 667212337 667212414 2.440000e-23 121.0
18 TraesCS7D01G458400 chr7A 98.182 55 1 0 2350 2404 667212363 667212417 4.120000e-16 97.1
19 TraesCS7D01G458400 chr3D 88.115 589 62 4 651 1239 519931922 519932502 0.000000e+00 693.0
20 TraesCS7D01G458400 chr3D 94.118 136 6 2 2392 2527 758021 757888 6.550000e-49 206.0
21 TraesCS7D01G458400 chr6B 83.694 693 45 19 150 816 440454734 440455384 4.310000e-165 592.0
22 TraesCS7D01G458400 chr6B 86.558 491 56 6 651 1141 248546564 248547044 2.650000e-147 532.0
23 TraesCS7D01G458400 chr6B 86.607 112 6 5 422 525 488852732 488852842 1.140000e-21 115.0
24 TraesCS7D01G458400 chr6B 78.195 133 16 9 4536 4659 285227062 285226934 6.930000e-09 73.1
25 TraesCS7D01G458400 chr2B 87.169 491 53 7 651 1141 326724025 326724505 2.630000e-152 549.0
26 TraesCS7D01G458400 chr2B 86.558 491 56 7 651 1141 736598168 736597688 2.650000e-147 532.0
27 TraesCS7D01G458400 chr2B 86.558 491 56 7 651 1141 736602442 736601962 2.650000e-147 532.0
28 TraesCS7D01G458400 chr2B 95.312 128 5 1 2404 2531 657789128 657789254 8.480000e-48 202.0
29 TraesCS7D01G458400 chr2B 79.195 298 47 7 4373 4657 607540265 607539970 5.100000e-45 193.0
30 TraesCS7D01G458400 chr4B 84.167 600 51 16 422 1006 507774720 507775290 4.400000e-150 542.0
31 TraesCS7D01G458400 chr4B 83.500 600 54 17 427 1011 197812975 197812406 7.410000e-143 518.0
32 TraesCS7D01G458400 chr4B 94.697 132 6 1 2404 2535 510828167 510828297 2.360000e-48 204.0
33 TraesCS7D01G458400 chr4B 94.656 131 6 1 2404 2534 575797726 575797855 8.480000e-48 202.0
34 TraesCS7D01G458400 chr5B 86.762 491 55 6 651 1141 23520884 23520404 5.690000e-149 538.0
35 TraesCS7D01G458400 chr5B 86.255 502 56 9 651 1150 492964379 492963889 2.650000e-147 532.0
36 TraesCS7D01G458400 chr5B 79.567 323 44 12 4373 4679 292486129 292485813 1.410000e-50 211.0
37 TraesCS7D01G458400 chr3B 83.946 598 54 17 422 1006 326087229 326087797 7.360000e-148 534.0
38 TraesCS7D01G458400 chr5D 79.817 327 38 17 4373 4679 258256356 258256038 3.920000e-51 213.0
39 TraesCS7D01G458400 chr5D 92.806 139 9 1 2404 2542 47527033 47526896 3.050000e-47 200.0
40 TraesCS7D01G458400 chr5A 97.581 124 2 1 2404 2527 527915790 527915912 1.410000e-50 211.0
41 TraesCS7D01G458400 chr5A 79.825 228 36 7 4373 4593 318272005 318272229 1.860000e-34 158.0
42 TraesCS7D01G458400 chr1D 97.581 124 2 1 2404 2527 494172287 494172165 1.410000e-50 211.0
43 TraesCS7D01G458400 chr2D 79.193 322 51 8 4373 4680 70636824 70636505 5.070000e-50 209.0
44 TraesCS7D01G458400 chr2A 94.656 131 6 1 2404 2534 63146619 63146748 8.480000e-48 202.0
45 TraesCS7D01G458400 chr2A 80.349 229 30 7 4373 4592 659894321 659894099 5.170000e-35 159.0
46 TraesCS7D01G458400 chr4A 92.754 138 8 2 2404 2540 94143667 94143803 1.100000e-46 198.0
47 TraesCS7D01G458400 chr1B 78.221 326 48 12 4373 4681 365447165 365446846 2.370000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G458400 chr7D 576281187 576286180 4993 False 1392.400000 9223 98.214286 1 4994 7 chr7D.!!$F2 4993
1 TraesCS7D01G458400 chr7B 638881546 638886177 4631 False 3230.500000 4006 91.488000 3 4994 2 chr7B.!!$F1 4991
2 TraesCS7D01G458400 chr7A 667210294 667214925 4631 False 977.016667 2623 92.509167 8 4994 6 chr7A.!!$F2 4986
3 TraesCS7D01G458400 chr7A 104515859 104516384 525 True 555.000000 555 85.687000 653 1183 1 chr7A.!!$R1 530
4 TraesCS7D01G458400 chr3D 519931922 519932502 580 False 693.000000 693 88.115000 651 1239 1 chr3D.!!$F1 588
5 TraesCS7D01G458400 chr6B 440454734 440455384 650 False 592.000000 592 83.694000 150 816 1 chr6B.!!$F2 666
6 TraesCS7D01G458400 chr2B 736597688 736602442 4754 True 532.000000 532 86.558000 651 1141 2 chr2B.!!$R2 490
7 TraesCS7D01G458400 chr4B 507774720 507775290 570 False 542.000000 542 84.167000 422 1006 1 chr4B.!!$F1 584
8 TraesCS7D01G458400 chr4B 197812406 197812975 569 True 518.000000 518 83.500000 427 1011 1 chr4B.!!$R1 584
9 TraesCS7D01G458400 chr3B 326087229 326087797 568 False 534.000000 534 83.946000 422 1006 1 chr3B.!!$F1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 208 0.250945 TCCGACTGACTGAGCTGAGT 60.251 55.0 5.18 5.18 0.00 3.41 F
540 588 0.462759 CTTTGAGGGCCTGGATCGAC 60.463 60.0 12.95 0.00 0.00 4.20 F
1317 5684 0.107456 CCATTGCTATCGTGGAGGCT 59.893 55.0 0.00 0.00 34.94 4.58 F
2085 6452 0.540365 CCACCAACAGGGCTGACATT 60.540 55.0 0.00 0.00 42.05 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1206 5573 0.191064 TCCTGGAGGAAGACACACCT 59.809 55.0 0.00 0.0 42.18 4.00 R
2422 6789 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.0 0.00 0.0 38.20 3.49 R
2430 6797 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.0 0.00 0.0 41.84 3.21 R
3997 8716 0.745128 CAACCCTATAAACGCGGGCA 60.745 55.0 12.47 0.0 41.86 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.343788 CTCGTCGGCCAGTCAGTCC 62.344 68.421 2.24 0.00 0.00 3.85
80 83 0.388263 GCCCGCTACTTATACGCTCC 60.388 60.000 0.00 0.00 0.00 4.70
133 137 4.472310 CCCCCTTCCCCCATCCCT 62.472 72.222 0.00 0.00 0.00 4.20
189 193 1.826921 GTCACGCCTCCCTATCCGA 60.827 63.158 0.00 0.00 0.00 4.55
190 194 1.826921 TCACGCCTCCCTATCCGAC 60.827 63.158 0.00 0.00 0.00 4.79
191 195 1.828660 CACGCCTCCCTATCCGACT 60.829 63.158 0.00 0.00 0.00 4.18
204 208 0.250945 TCCGACTGACTGAGCTGAGT 60.251 55.000 5.18 5.18 0.00 3.41
205 209 0.600557 CCGACTGACTGAGCTGAGTT 59.399 55.000 7.44 0.00 0.00 3.01
231 235 5.739161 CCGTGATTTGATTTCTTCCGAATTC 59.261 40.000 0.00 0.00 32.70 2.17
232 236 6.403636 CCGTGATTTGATTTCTTCCGAATTCT 60.404 38.462 3.52 0.00 33.08 2.40
261 265 1.602888 CTGCTTGCTTGAGCCCTGT 60.603 57.895 0.00 0.00 42.01 4.00
316 322 4.722700 CCCGCCTGTGGTTCTGGG 62.723 72.222 0.00 0.00 35.96 4.45
397 411 4.570874 GATTCGGGCTGGGGAGGC 62.571 72.222 0.00 0.00 0.00 4.70
407 421 3.171388 GGGGAGGCGGATGGATGT 61.171 66.667 0.00 0.00 0.00 3.06
415 441 1.597742 GCGGATGGATGTTATGCTGT 58.402 50.000 0.00 0.00 0.00 4.40
418 444 2.945008 CGGATGGATGTTATGCTGTTGT 59.055 45.455 0.00 0.00 0.00 3.32
474 500 3.448686 ACCGTTTAGATTGCTCATCTCG 58.551 45.455 2.57 1.94 41.80 4.04
504 536 8.908903 AGGTAGTAGAGTAATCTGAAGAACATG 58.091 37.037 2.23 0.00 0.00 3.21
511 553 6.409704 AGTAATCTGAAGAACATGCAAGCTA 58.590 36.000 0.00 0.00 0.00 3.32
512 554 5.814764 AATCTGAAGAACATGCAAGCTAG 57.185 39.130 0.00 0.00 0.00 3.42
540 588 0.462759 CTTTGAGGGCCTGGATCGAC 60.463 60.000 12.95 0.00 0.00 4.20
559 607 3.194062 GACAGATGGCTCTAGTTGCTTC 58.806 50.000 9.54 7.64 0.00 3.86
565 613 4.457834 TGGCTCTAGTTGCTTCTAGTTC 57.542 45.455 12.77 7.81 38.66 3.01
566 614 3.832490 TGGCTCTAGTTGCTTCTAGTTCA 59.168 43.478 12.77 8.65 38.66 3.18
574 623 2.902608 TGCTTCTAGTTCAAGGGAGGA 58.097 47.619 0.00 0.00 0.00 3.71
576 625 3.261897 TGCTTCTAGTTCAAGGGAGGAAG 59.738 47.826 0.00 0.00 33.93 3.46
580 629 4.699994 TCTAGTTCAAGGGAGGAAGGAAT 58.300 43.478 0.00 0.00 0.00 3.01
581 630 3.728385 AGTTCAAGGGAGGAAGGAATG 57.272 47.619 0.00 0.00 0.00 2.67
584 633 2.200081 TCAAGGGAGGAAGGAATGGAG 58.800 52.381 0.00 0.00 0.00 3.86
585 634 1.213926 CAAGGGAGGAAGGAATGGAGG 59.786 57.143 0.00 0.00 0.00 4.30
586 635 0.725133 AGGGAGGAAGGAATGGAGGA 59.275 55.000 0.00 0.00 0.00 3.71
587 636 1.082879 AGGGAGGAAGGAATGGAGGAA 59.917 52.381 0.00 0.00 0.00 3.36
596 648 2.024941 AGGAATGGAGGAATGGTTGGTC 60.025 50.000 0.00 0.00 0.00 4.02
631 686 5.407407 TGTCTGGTTCCATTCTAGTTCTC 57.593 43.478 0.00 0.00 0.00 2.87
679 739 1.268899 CCAAGCCTTCTTGCTGTGAAG 59.731 52.381 0.00 6.85 46.38 3.02
816 5178 1.933853 GCTCGTAGCATTGGTCGATTT 59.066 47.619 9.61 0.00 41.89 2.17
884 5246 4.651585 TGCCTGCGTGCAAAAATC 57.348 50.000 0.00 0.00 38.56 2.17
885 5247 1.738432 TGCCTGCGTGCAAAAATCA 59.262 47.368 0.00 0.00 38.56 2.57
928 5291 4.388378 TCTGTCTCTGATTGATGCTGAG 57.612 45.455 0.00 0.00 34.00 3.35
974 5341 6.435591 TCTTATTCACGCTGATGATATCTCCT 59.564 38.462 3.98 0.00 0.00 3.69
1020 5387 1.596477 GGCGCCATCCATGAGTCTC 60.596 63.158 24.80 0.00 0.00 3.36
1122 5489 1.134694 GCACAAGCCGAACGATTCC 59.865 57.895 0.00 0.00 33.58 3.01
1206 5573 2.184322 GCTCTCGCCGATGACCAA 59.816 61.111 0.00 0.00 0.00 3.67
1302 5669 2.504367 CTGTTTGAGAACGGGACCATT 58.496 47.619 0.00 0.00 38.28 3.16
1317 5684 0.107456 CCATTGCTATCGTGGAGGCT 59.893 55.000 0.00 0.00 34.94 4.58
1320 5687 3.257393 CATTGCTATCGTGGAGGCTATC 58.743 50.000 0.00 0.00 0.00 2.08
1425 5792 3.633525 AGAAGAACATTGACTTTGCTGCA 59.366 39.130 0.00 0.00 0.00 4.41
1524 5891 1.423395 GTCTGTTCTTGCTGTCGAGG 58.577 55.000 0.00 0.00 0.00 4.63
1533 5900 1.077357 GCTGTCGAGGAGAGGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
1578 5945 2.346541 GCCTGGCTTTCCTCTTGGC 61.347 63.158 12.43 0.00 0.00 4.52
1665 6032 1.597937 GGTGTTGACGAAGCAAAGCAG 60.598 52.381 0.00 0.00 0.00 4.24
2040 6407 2.918934 TGAGATGGATGGTTTTGAGGGA 59.081 45.455 0.00 0.00 0.00 4.20
2085 6452 0.540365 CCACCAACAGGGCTGACATT 60.540 55.000 0.00 0.00 42.05 2.71
2100 6467 4.380444 GCTGACATTTTGGATTCCGCTTTA 60.380 41.667 0.00 0.00 0.00 1.85
2135 6502 3.184581 CGCTTTGACAGACAGGTTAGTTC 59.815 47.826 0.00 0.00 0.00 3.01
2136 6503 3.498777 GCTTTGACAGACAGGTTAGTTCC 59.501 47.826 0.00 0.00 0.00 3.62
2137 6504 4.743955 GCTTTGACAGACAGGTTAGTTCCT 60.744 45.833 0.00 0.00 38.51 3.36
2138 6505 5.510861 GCTTTGACAGACAGGTTAGTTCCTA 60.511 44.000 0.00 0.00 35.87 2.94
2139 6506 6.681729 TTTGACAGACAGGTTAGTTCCTAT 57.318 37.500 0.00 0.00 35.87 2.57
2140 6507 5.916661 TGACAGACAGGTTAGTTCCTATC 57.083 43.478 0.00 0.00 35.87 2.08
2141 6508 4.710375 TGACAGACAGGTTAGTTCCTATCC 59.290 45.833 0.00 0.00 31.95 2.59
2142 6509 4.684724 ACAGACAGGTTAGTTCCTATCCA 58.315 43.478 0.00 0.00 31.95 3.41
2143 6510 4.712337 ACAGACAGGTTAGTTCCTATCCAG 59.288 45.833 0.00 0.00 31.95 3.86
2144 6511 3.707102 AGACAGGTTAGTTCCTATCCAGC 59.293 47.826 0.00 0.00 31.95 4.85
2145 6512 3.707102 GACAGGTTAGTTCCTATCCAGCT 59.293 47.826 0.00 0.00 35.87 4.24
2146 6513 4.104831 ACAGGTTAGTTCCTATCCAGCTT 58.895 43.478 0.00 0.00 35.87 3.74
2147 6514 4.536489 ACAGGTTAGTTCCTATCCAGCTTT 59.464 41.667 0.00 0.00 35.87 3.51
2148 6515 5.014228 ACAGGTTAGTTCCTATCCAGCTTTT 59.986 40.000 0.00 0.00 35.87 2.27
2149 6516 5.946377 CAGGTTAGTTCCTATCCAGCTTTTT 59.054 40.000 0.00 0.00 35.87 1.94
2177 6544 9.533831 AAGGTTAATAACATCAGTCTGGAATTT 57.466 29.630 5.45 0.00 0.00 1.82
2184 6551 9.807649 ATAACATCAGTCTGGAATTTAATTTGC 57.192 29.630 0.00 0.00 0.00 3.68
2185 6552 7.230849 ACATCAGTCTGGAATTTAATTTGCA 57.769 32.000 0.00 4.55 0.00 4.08
2186 6553 7.844009 ACATCAGTCTGGAATTTAATTTGCAT 58.156 30.769 4.99 0.00 0.00 3.96
2187 6554 7.762615 ACATCAGTCTGGAATTTAATTTGCATG 59.237 33.333 4.99 2.27 0.00 4.06
2188 6555 6.632909 TCAGTCTGGAATTTAATTTGCATGG 58.367 36.000 4.99 0.00 0.00 3.66
2189 6556 6.211184 TCAGTCTGGAATTTAATTTGCATGGT 59.789 34.615 4.99 0.00 0.00 3.55
2190 6557 6.532657 CAGTCTGGAATTTAATTTGCATGGTC 59.467 38.462 4.99 0.00 0.00 4.02
2191 6558 6.438425 AGTCTGGAATTTAATTTGCATGGTCT 59.562 34.615 4.99 0.00 0.00 3.85
2192 6559 7.615365 AGTCTGGAATTTAATTTGCATGGTCTA 59.385 33.333 4.99 0.00 0.00 2.59
2193 6560 8.250332 GTCTGGAATTTAATTTGCATGGTCTAA 58.750 33.333 4.99 0.00 0.00 2.10
2194 6561 8.811017 TCTGGAATTTAATTTGCATGGTCTAAA 58.189 29.630 4.99 0.00 0.00 1.85
2195 6562 8.770438 TGGAATTTAATTTGCATGGTCTAAAC 57.230 30.769 0.00 0.00 0.00 2.01
2196 6563 7.821846 TGGAATTTAATTTGCATGGTCTAAACC 59.178 33.333 0.00 0.00 46.66 3.27
2197 6564 7.279981 GGAATTTAATTTGCATGGTCTAAACCC 59.720 37.037 0.00 0.00 45.83 4.11
2198 6565 6.926630 TTTAATTTGCATGGTCTAAACCCT 57.073 33.333 0.00 0.00 45.83 4.34
2199 6566 8.602472 ATTTAATTTGCATGGTCTAAACCCTA 57.398 30.769 0.00 0.00 45.83 3.53
2200 6567 8.602472 TTTAATTTGCATGGTCTAAACCCTAT 57.398 30.769 0.00 0.00 45.83 2.57
2201 6568 8.602472 TTAATTTGCATGGTCTAAACCCTATT 57.398 30.769 0.00 0.00 45.83 1.73
2202 6569 7.494922 AATTTGCATGGTCTAAACCCTATTT 57.505 32.000 0.00 0.00 45.83 1.40
2203 6570 5.913137 TTGCATGGTCTAAACCCTATTTG 57.087 39.130 0.00 0.00 45.83 2.32
2204 6571 3.699038 TGCATGGTCTAAACCCTATTTGC 59.301 43.478 0.00 0.00 45.83 3.68
2205 6572 3.699038 GCATGGTCTAAACCCTATTTGCA 59.301 43.478 0.00 0.00 45.83 4.08
2206 6573 4.342092 GCATGGTCTAAACCCTATTTGCAT 59.658 41.667 0.00 0.00 45.83 3.96
2207 6574 5.534654 GCATGGTCTAAACCCTATTTGCATA 59.465 40.000 0.00 0.00 45.83 3.14
2208 6575 6.209391 GCATGGTCTAAACCCTATTTGCATAT 59.791 38.462 0.00 0.00 45.83 1.78
2209 6576 7.255942 GCATGGTCTAAACCCTATTTGCATATT 60.256 37.037 0.00 0.00 45.83 1.28
2210 6577 7.817418 TGGTCTAAACCCTATTTGCATATTC 57.183 36.000 0.00 0.00 45.83 1.75
2211 6578 7.582719 TGGTCTAAACCCTATTTGCATATTCT 58.417 34.615 0.00 0.00 45.83 2.40
2212 6579 8.058847 TGGTCTAAACCCTATTTGCATATTCTT 58.941 33.333 0.00 0.00 45.83 2.52
2213 6580 9.569122 GGTCTAAACCCTATTTGCATATTCTTA 57.431 33.333 0.00 0.00 39.93 2.10
2220 6587 8.526147 ACCCTATTTGCATATTCTTATCATTGC 58.474 33.333 0.00 0.00 0.00 3.56
2221 6588 8.525316 CCCTATTTGCATATTCTTATCATTGCA 58.475 33.333 0.00 0.00 38.24 4.08
2222 6589 9.917129 CCTATTTGCATATTCTTATCATTGCAA 57.083 29.630 0.00 0.00 45.31 4.08
2228 6595 9.687210 TGCATATTCTTATCATTGCAAATCTTC 57.313 29.630 1.71 0.00 37.17 2.87
2229 6596 9.136952 GCATATTCTTATCATTGCAAATCTTCC 57.863 33.333 1.71 0.00 0.00 3.46
2232 6599 6.140303 TCTTATCATTGCAAATCTTCCTGC 57.860 37.500 1.71 0.00 39.09 4.85
2233 6600 5.653330 TCTTATCATTGCAAATCTTCCTGCA 59.347 36.000 1.71 0.00 46.50 4.41
2239 6606 3.719924 TGCAAATCTTCCTGCAAAAGTG 58.280 40.909 8.03 2.25 45.25 3.16
2240 6607 3.132646 TGCAAATCTTCCTGCAAAAGTGT 59.867 39.130 8.03 0.00 45.25 3.55
2241 6608 4.122046 GCAAATCTTCCTGCAAAAGTGTT 58.878 39.130 8.03 3.49 38.48 3.32
2242 6609 4.571984 GCAAATCTTCCTGCAAAAGTGTTT 59.428 37.500 8.03 7.94 38.48 2.83
2243 6610 5.752955 GCAAATCTTCCTGCAAAAGTGTTTA 59.247 36.000 8.03 0.00 38.48 2.01
2244 6611 6.292328 GCAAATCTTCCTGCAAAAGTGTTTAC 60.292 38.462 8.03 3.89 38.48 2.01
2245 6612 4.911514 TCTTCCTGCAAAAGTGTTTACC 57.088 40.909 8.03 0.00 0.00 2.85
2246 6613 4.532834 TCTTCCTGCAAAAGTGTTTACCT 58.467 39.130 8.03 0.00 0.00 3.08
2247 6614 4.953579 TCTTCCTGCAAAAGTGTTTACCTT 59.046 37.500 8.03 0.00 0.00 3.50
2248 6615 6.123651 TCTTCCTGCAAAAGTGTTTACCTTA 58.876 36.000 8.03 0.00 0.00 2.69
2249 6616 5.761165 TCCTGCAAAAGTGTTTACCTTAC 57.239 39.130 0.00 0.00 0.00 2.34
2250 6617 5.442391 TCCTGCAAAAGTGTTTACCTTACT 58.558 37.500 0.00 0.00 0.00 2.24
2251 6618 5.889289 TCCTGCAAAAGTGTTTACCTTACTT 59.111 36.000 0.00 0.00 36.29 2.24
2252 6619 6.378848 TCCTGCAAAAGTGTTTACCTTACTTT 59.621 34.615 0.00 0.00 44.09 2.66
2253 6620 6.475402 CCTGCAAAAGTGTTTACCTTACTTTG 59.525 38.462 0.00 0.00 42.11 2.77
2254 6621 6.926313 TGCAAAAGTGTTTACCTTACTTTGT 58.074 32.000 0.00 0.00 42.11 2.83
2255 6622 7.379750 TGCAAAAGTGTTTACCTTACTTTGTT 58.620 30.769 0.00 0.00 42.11 2.83
2256 6623 7.542824 TGCAAAAGTGTTTACCTTACTTTGTTC 59.457 33.333 0.00 0.00 42.11 3.18
2257 6624 7.758076 GCAAAAGTGTTTACCTTACTTTGTTCT 59.242 33.333 0.00 0.00 42.11 3.01
2258 6625 9.634163 CAAAAGTGTTTACCTTACTTTGTTCTT 57.366 29.630 0.00 0.00 42.11 2.52
2260 6627 9.850628 AAAGTGTTTACCTTACTTTGTTCTTTC 57.149 29.630 0.00 0.00 41.57 2.62
2261 6628 8.803397 AGTGTTTACCTTACTTTGTTCTTTCT 57.197 30.769 0.00 0.00 0.00 2.52
2262 6629 9.239551 AGTGTTTACCTTACTTTGTTCTTTCTT 57.760 29.630 0.00 0.00 0.00 2.52
2274 6641 9.713713 ACTTTGTTCTTTCTTACTAAGATCCTC 57.286 33.333 0.00 0.00 37.38 3.71
2275 6642 9.712305 CTTTGTTCTTTCTTACTAAGATCCTCA 57.288 33.333 0.00 0.00 37.38 3.86
2276 6643 9.712305 TTTGTTCTTTCTTACTAAGATCCTCAG 57.288 33.333 0.00 0.00 37.38 3.35
2277 6644 7.841956 TGTTCTTTCTTACTAAGATCCTCAGG 58.158 38.462 0.00 0.00 37.38 3.86
2278 6645 7.455008 TGTTCTTTCTTACTAAGATCCTCAGGT 59.545 37.037 0.00 0.00 37.38 4.00
2279 6646 8.315482 GTTCTTTCTTACTAAGATCCTCAGGTT 58.685 37.037 0.00 0.00 37.38 3.50
2280 6647 8.068892 TCTTTCTTACTAAGATCCTCAGGTTC 57.931 38.462 0.00 0.00 37.38 3.62
2281 6648 7.896496 TCTTTCTTACTAAGATCCTCAGGTTCT 59.104 37.037 0.00 0.00 37.38 3.01
2282 6649 8.437274 TTTCTTACTAAGATCCTCAGGTTCTT 57.563 34.615 19.14 19.14 42.34 2.52
2347 6714 8.962884 AATTTAATTTGCATGTCCCTATTTCC 57.037 30.769 0.00 0.00 0.00 3.13
2348 6715 7.487822 TTTAATTTGCATGTCCCTATTTCCA 57.512 32.000 0.00 0.00 0.00 3.53
2349 6716 7.673641 TTAATTTGCATGTCCCTATTTCCAT 57.326 32.000 0.00 0.00 0.00 3.41
2350 6717 8.774546 TTAATTTGCATGTCCCTATTTCCATA 57.225 30.769 0.00 0.00 0.00 2.74
2351 6718 7.673641 AATTTGCATGTCCCTATTTCCATAA 57.326 32.000 0.00 0.00 0.00 1.90
2352 6719 6.713762 TTTGCATGTCCCTATTTCCATAAG 57.286 37.500 0.00 0.00 0.00 1.73
2353 6720 4.728772 TGCATGTCCCTATTTCCATAAGG 58.271 43.478 0.00 0.00 0.00 2.69
2354 6721 4.167892 TGCATGTCCCTATTTCCATAAGGT 59.832 41.667 0.00 0.00 35.89 3.50
2355 6722 5.140454 GCATGTCCCTATTTCCATAAGGTT 58.860 41.667 0.00 0.00 35.89 3.50
2356 6723 6.126332 TGCATGTCCCTATTTCCATAAGGTTA 60.126 38.462 0.00 0.00 35.89 2.85
2357 6724 6.775629 GCATGTCCCTATTTCCATAAGGTTAA 59.224 38.462 0.00 0.00 35.89 2.01
2358 6725 7.451566 GCATGTCCCTATTTCCATAAGGTTAAT 59.548 37.037 0.00 0.00 35.89 1.40
2361 6728 9.856162 TGTCCCTATTTCCATAAGGTTAATAAC 57.144 33.333 0.00 0.00 35.89 1.89
2362 6729 9.856162 GTCCCTATTTCCATAAGGTTAATAACA 57.144 33.333 5.45 0.00 35.89 2.41
2370 6737 9.613428 TTCCATAAGGTTAATAACATCAGTCTG 57.387 33.333 5.45 0.00 35.89 3.51
2371 6738 8.210946 TCCATAAGGTTAATAACATCAGTCTGG 58.789 37.037 5.45 2.59 35.89 3.86
2372 6739 8.210946 CCATAAGGTTAATAACATCAGTCTGGA 58.789 37.037 5.45 0.00 0.00 3.86
2373 6740 9.613428 CATAAGGTTAATAACATCAGTCTGGAA 57.387 33.333 5.45 0.00 0.00 3.53
2376 6743 9.533831 AAGGTTAATAACATCAGTCTGGAATTT 57.466 29.630 5.45 0.00 0.00 1.82
2383 6750 9.807649 ATAACATCAGTCTGGAATTTAATTTGC 57.192 29.630 0.00 0.00 0.00 3.68
2384 6751 7.230849 ACATCAGTCTGGAATTTAATTTGCA 57.769 32.000 0.00 4.55 0.00 4.08
2385 6752 7.844009 ACATCAGTCTGGAATTTAATTTGCAT 58.156 30.769 4.99 0.00 0.00 3.96
2386 6753 7.762615 ACATCAGTCTGGAATTTAATTTGCATG 59.237 33.333 4.99 2.27 0.00 4.06
2387 6754 7.230849 TCAGTCTGGAATTTAATTTGCATGT 57.769 32.000 4.99 0.00 0.00 3.21
2388 6755 7.315142 TCAGTCTGGAATTTAATTTGCATGTC 58.685 34.615 4.99 0.86 0.00 3.06
2389 6756 6.532657 CAGTCTGGAATTTAATTTGCATGTCC 59.467 38.462 4.99 0.00 0.00 4.02
2390 6757 5.812127 GTCTGGAATTTAATTTGCATGTCCC 59.188 40.000 4.99 0.00 0.00 4.46
2391 6758 5.721000 TCTGGAATTTAATTTGCATGTCCCT 59.279 36.000 4.99 0.00 0.00 4.20
2392 6759 6.894654 TCTGGAATTTAATTTGCATGTCCCTA 59.105 34.615 4.99 0.00 0.00 3.53
2393 6760 7.564660 TCTGGAATTTAATTTGCATGTCCCTAT 59.435 33.333 4.99 0.00 0.00 2.57
2394 6761 8.088463 TGGAATTTAATTTGCATGTCCCTATT 57.912 30.769 0.75 0.00 0.00 1.73
2395 6762 8.547173 TGGAATTTAATTTGCATGTCCCTATTT 58.453 29.630 0.75 0.00 0.00 1.40
2396 6763 9.045223 GGAATTTAATTTGCATGTCCCTATTTC 57.955 33.333 0.00 0.00 0.00 2.17
2397 6764 8.962884 AATTTAATTTGCATGTCCCTATTTCC 57.037 30.769 0.00 0.00 0.00 3.13
2398 6765 7.487822 TTTAATTTGCATGTCCCTATTTCCA 57.512 32.000 0.00 0.00 0.00 3.53
2399 6766 7.673641 TTAATTTGCATGTCCCTATTTCCAT 57.326 32.000 0.00 0.00 0.00 3.41
2400 6767 8.774546 TTAATTTGCATGTCCCTATTTCCATA 57.225 30.769 0.00 0.00 0.00 2.74
2401 6768 7.860649 AATTTGCATGTCCCTATTTCCATAT 57.139 32.000 0.00 0.00 0.00 1.78
2402 6769 7.860649 ATTTGCATGTCCCTATTTCCATATT 57.139 32.000 0.00 0.00 0.00 1.28
2403 6770 6.899393 TTGCATGTCCCTATTTCCATATTC 57.101 37.500 0.00 0.00 0.00 1.75
2404 6771 5.951204 TGCATGTCCCTATTTCCATATTCA 58.049 37.500 0.00 0.00 0.00 2.57
2405 6772 6.005823 TGCATGTCCCTATTTCCATATTCAG 58.994 40.000 0.00 0.00 0.00 3.02
2406 6773 5.416952 GCATGTCCCTATTTCCATATTCAGG 59.583 44.000 0.00 0.00 0.00 3.86
2407 6774 5.582950 TGTCCCTATTTCCATATTCAGGG 57.417 43.478 0.00 0.00 43.52 4.45
2408 6775 4.353788 TGTCCCTATTTCCATATTCAGGGG 59.646 45.833 4.69 0.00 42.59 4.79
2409 6776 4.354087 GTCCCTATTTCCATATTCAGGGGT 59.646 45.833 4.69 0.00 42.59 4.95
2410 6777 4.353788 TCCCTATTTCCATATTCAGGGGTG 59.646 45.833 4.69 0.00 42.59 4.61
2411 6778 4.082125 CCTATTTCCATATTCAGGGGTGC 58.918 47.826 0.00 0.00 0.00 5.01
2412 6779 3.686227 ATTTCCATATTCAGGGGTGCA 57.314 42.857 0.00 0.00 0.00 4.57
2413 6780 3.686227 TTTCCATATTCAGGGGTGCAT 57.314 42.857 0.00 0.00 0.00 3.96
2414 6781 2.662535 TCCATATTCAGGGGTGCATG 57.337 50.000 0.00 0.00 0.00 4.06
2415 6782 1.145531 TCCATATTCAGGGGTGCATGG 59.854 52.381 0.00 0.00 35.33 3.66
2416 6783 1.145531 CCATATTCAGGGGTGCATGGA 59.854 52.381 0.00 0.00 35.92 3.41
2417 6784 2.424667 CCATATTCAGGGGTGCATGGAA 60.425 50.000 0.00 0.00 35.92 3.53
2418 6785 2.734755 TATTCAGGGGTGCATGGAAG 57.265 50.000 0.00 0.00 0.00 3.46
2419 6786 0.685458 ATTCAGGGGTGCATGGAAGC 60.685 55.000 0.00 0.00 0.00 3.86
2420 6787 1.792757 TTCAGGGGTGCATGGAAGCT 61.793 55.000 0.00 0.00 34.99 3.74
2421 6788 1.304713 CAGGGGTGCATGGAAGCTT 60.305 57.895 0.00 0.00 34.99 3.74
2422 6789 0.901580 CAGGGGTGCATGGAAGCTTT 60.902 55.000 0.00 0.00 34.99 3.51
2423 6790 0.901580 AGGGGTGCATGGAAGCTTTG 60.902 55.000 0.00 0.00 34.99 2.77
2424 6791 1.079612 GGGTGCATGGAAGCTTTGC 60.080 57.895 13.54 13.54 36.91 3.68
2425 6792 1.538687 GGGTGCATGGAAGCTTTGCT 61.539 55.000 19.45 0.00 42.56 3.91
2426 6793 1.176527 GGTGCATGGAAGCTTTGCTA 58.823 50.000 19.45 6.45 38.25 3.49
2427 6794 1.753073 GGTGCATGGAAGCTTTGCTAT 59.247 47.619 19.45 1.17 38.25 2.97
2428 6795 2.223665 GGTGCATGGAAGCTTTGCTATC 60.224 50.000 19.45 11.29 38.25 2.08
2429 6796 2.026641 TGCATGGAAGCTTTGCTATCC 58.973 47.619 19.45 7.90 38.25 2.59
2430 6797 2.026641 GCATGGAAGCTTTGCTATCCA 58.973 47.619 13.22 18.29 43.79 3.41
2431 6798 2.626743 GCATGGAAGCTTTGCTATCCAT 59.373 45.455 20.09 20.09 46.59 3.41
2433 6800 3.370840 TGGAAGCTTTGCTATCCATGT 57.629 42.857 0.00 0.00 39.22 3.21
2434 6801 3.018856 TGGAAGCTTTGCTATCCATGTG 58.981 45.455 0.00 0.00 39.22 3.21
2435 6802 2.223665 GGAAGCTTTGCTATCCATGTGC 60.224 50.000 0.00 0.00 38.25 4.57
2436 6803 1.396653 AGCTTTGCTATCCATGTGCC 58.603 50.000 0.00 0.00 36.99 5.01
2437 6804 1.105457 GCTTTGCTATCCATGTGCCA 58.895 50.000 0.00 0.00 0.00 4.92
2438 6805 1.066605 GCTTTGCTATCCATGTGCCAG 59.933 52.381 0.00 0.00 0.00 4.85
2439 6806 2.646930 CTTTGCTATCCATGTGCCAGA 58.353 47.619 0.00 0.00 0.00 3.86
2440 6807 2.336945 TTGCTATCCATGTGCCAGAG 57.663 50.000 0.00 0.00 0.00 3.35
2441 6808 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
2442 6809 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
2443 6810 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
2444 6811 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
2445 6812 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
2446 6813 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
2447 6814 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
2448 6815 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
2449 6816 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
2450 6817 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
2458 6825 3.786101 CCATGAGTTGGTCGCGAG 58.214 61.111 10.24 0.00 40.99 5.03
2459 6826 1.215382 CCATGAGTTGGTCGCGAGA 59.785 57.895 10.24 0.00 40.99 4.04
2460 6827 0.179100 CCATGAGTTGGTCGCGAGAT 60.179 55.000 10.24 0.00 45.19 2.75
2461 6828 1.203928 CATGAGTTGGTCGCGAGATC 58.796 55.000 10.24 2.63 45.19 2.75
2462 6829 1.107114 ATGAGTTGGTCGCGAGATCT 58.893 50.000 10.24 5.84 43.23 2.75
2463 6830 0.888619 TGAGTTGGTCGCGAGATCTT 59.111 50.000 10.24 0.00 43.23 2.40
2464 6831 2.089201 TGAGTTGGTCGCGAGATCTTA 58.911 47.619 10.24 0.00 43.23 2.10
2465 6832 2.688446 TGAGTTGGTCGCGAGATCTTAT 59.312 45.455 10.24 0.00 43.23 1.73
2466 6833 3.046390 GAGTTGGTCGCGAGATCTTATG 58.954 50.000 10.24 0.00 43.23 1.90
2467 6834 2.128035 GTTGGTCGCGAGATCTTATGG 58.872 52.381 10.24 0.00 43.23 2.74
2468 6835 1.687563 TGGTCGCGAGATCTTATGGA 58.312 50.000 10.24 0.00 43.23 3.41
2469 6836 2.239400 TGGTCGCGAGATCTTATGGAT 58.761 47.619 10.24 0.00 43.23 3.41
2470 6837 2.628178 TGGTCGCGAGATCTTATGGATT 59.372 45.455 10.24 0.00 43.23 3.01
2471 6838 3.069586 TGGTCGCGAGATCTTATGGATTT 59.930 43.478 10.24 0.00 43.23 2.17
2472 6839 3.675698 GGTCGCGAGATCTTATGGATTTC 59.324 47.826 10.24 0.00 45.19 2.17
2473 6840 4.299155 GTCGCGAGATCTTATGGATTTCA 58.701 43.478 10.24 0.00 45.19 2.69
2474 6841 4.149046 GTCGCGAGATCTTATGGATTTCAC 59.851 45.833 10.24 0.00 45.19 3.18
2475 6842 3.430218 CGCGAGATCTTATGGATTTCACC 59.570 47.826 0.00 0.00 35.90 4.02
2476 6843 4.636249 GCGAGATCTTATGGATTTCACCT 58.364 43.478 0.00 0.00 35.90 4.00
2477 6844 4.688413 GCGAGATCTTATGGATTTCACCTC 59.312 45.833 0.00 0.00 35.90 3.85
2478 6845 5.510520 GCGAGATCTTATGGATTTCACCTCT 60.511 44.000 0.00 0.00 35.90 3.69
2479 6846 6.294787 GCGAGATCTTATGGATTTCACCTCTA 60.295 42.308 0.00 0.00 35.90 2.43
2480 6847 7.312154 CGAGATCTTATGGATTTCACCTCTAG 58.688 42.308 0.00 0.00 35.90 2.43
2481 6848 7.003402 AGATCTTATGGATTTCACCTCTAGC 57.997 40.000 0.00 0.00 34.33 3.42
2482 6849 5.552870 TCTTATGGATTTCACCTCTAGCC 57.447 43.478 0.00 0.00 0.00 3.93
2483 6850 5.219739 TCTTATGGATTTCACCTCTAGCCT 58.780 41.667 0.00 0.00 0.00 4.58
2484 6851 6.382087 TCTTATGGATTTCACCTCTAGCCTA 58.618 40.000 0.00 0.00 0.00 3.93
2485 6852 4.965200 ATGGATTTCACCTCTAGCCTAC 57.035 45.455 0.00 0.00 0.00 3.18
2486 6853 3.039011 TGGATTTCACCTCTAGCCTACC 58.961 50.000 0.00 0.00 0.00 3.18
2487 6854 2.369203 GGATTTCACCTCTAGCCTACCC 59.631 54.545 0.00 0.00 0.00 3.69
2488 6855 1.875488 TTTCACCTCTAGCCTACCCC 58.125 55.000 0.00 0.00 0.00 4.95
2489 6856 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
2490 6857 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
2491 6858 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
2492 6859 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
2493 6860 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
2494 6861 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
2495 6862 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
2496 6863 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
2497 6864 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
2498 6865 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
2510 6877 5.213891 CAACTTGTTTGGGATTAAAGGCT 57.786 39.130 0.00 0.00 0.00 4.58
2511 6878 5.610398 CAACTTGTTTGGGATTAAAGGCTT 58.390 37.500 0.00 0.00 0.00 4.35
2512 6879 5.887214 ACTTGTTTGGGATTAAAGGCTTT 57.113 34.783 17.76 17.76 0.00 3.51
2513 6880 5.610398 ACTTGTTTGGGATTAAAGGCTTTG 58.390 37.500 22.32 3.36 0.00 2.77
2514 6881 5.130311 ACTTGTTTGGGATTAAAGGCTTTGT 59.870 36.000 22.32 10.79 0.00 2.83
2515 6882 5.622346 TGTTTGGGATTAAAGGCTTTGTT 57.378 34.783 22.32 9.32 0.00 2.83
2516 6883 5.363939 TGTTTGGGATTAAAGGCTTTGTTG 58.636 37.500 22.32 0.00 0.00 3.33
2517 6884 5.104735 TGTTTGGGATTAAAGGCTTTGTTGT 60.105 36.000 22.32 5.45 0.00 3.32
2518 6885 5.622346 TTGGGATTAAAGGCTTTGTTGTT 57.378 34.783 22.32 2.54 0.00 2.83
2519 6886 4.954875 TGGGATTAAAGGCTTTGTTGTTG 58.045 39.130 22.32 0.00 0.00 3.33
2520 6887 4.407296 TGGGATTAAAGGCTTTGTTGTTGT 59.593 37.500 22.32 0.00 0.00 3.32
2521 6888 5.104735 TGGGATTAAAGGCTTTGTTGTTGTT 60.105 36.000 22.32 0.00 0.00 2.83
2522 6889 5.236263 GGGATTAAAGGCTTTGTTGTTGTTG 59.764 40.000 22.32 0.00 0.00 3.33
2523 6890 5.815222 GGATTAAAGGCTTTGTTGTTGTTGT 59.185 36.000 22.32 0.00 0.00 3.32
2524 6891 6.315144 GGATTAAAGGCTTTGTTGTTGTTGTT 59.685 34.615 22.32 0.00 0.00 2.83
2525 6892 6.473397 TTAAAGGCTTTGTTGTTGTTGTTG 57.527 33.333 22.32 0.00 0.00 3.33
2526 6893 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
2527 6894 3.584834 AGGCTTTGTTGTTGTTGTTGTC 58.415 40.909 0.00 0.00 0.00 3.18
2528 6895 2.670905 GGCTTTGTTGTTGTTGTTGTCC 59.329 45.455 0.00 0.00 0.00 4.02
2529 6896 2.670905 GCTTTGTTGTTGTTGTTGTCCC 59.329 45.455 0.00 0.00 0.00 4.46
2530 6897 3.616317 GCTTTGTTGTTGTTGTTGTCCCT 60.616 43.478 0.00 0.00 0.00 4.20
2531 6898 4.381079 GCTTTGTTGTTGTTGTTGTCCCTA 60.381 41.667 0.00 0.00 0.00 3.53
2532 6899 5.681179 GCTTTGTTGTTGTTGTTGTCCCTAT 60.681 40.000 0.00 0.00 0.00 2.57
2533 6900 5.923733 TTGTTGTTGTTGTTGTCCCTATT 57.076 34.783 0.00 0.00 0.00 1.73
2534 6901 5.923733 TGTTGTTGTTGTTGTCCCTATTT 57.076 34.783 0.00 0.00 0.00 1.40
2535 6902 5.897050 TGTTGTTGTTGTTGTCCCTATTTC 58.103 37.500 0.00 0.00 0.00 2.17
2618 6988 4.623932 TCTCATGTGCTTGTAAACCTCT 57.376 40.909 0.00 0.00 0.00 3.69
2729 7409 9.646522 ATCTTGCTTAACATTTGGATATACCTT 57.353 29.630 0.00 0.00 39.86 3.50
3057 7737 1.069049 GAAGTTGGGCATGCAGTTTGT 59.931 47.619 21.36 0.00 0.00 2.83
3065 7745 1.067635 GCATGCAGTTTGTGGGTAAGG 60.068 52.381 14.21 0.00 0.00 2.69
3067 7747 0.178975 TGCAGTTTGTGGGTAAGGGG 60.179 55.000 0.00 0.00 0.00 4.79
3105 7803 3.617288 CGAATCCCGCATTGGATCTGATA 60.617 47.826 0.31 0.00 44.49 2.15
3256 7973 0.179040 TTTCAGGCGTTTCCCGTTCT 60.179 50.000 0.00 0.00 39.32 3.01
3588 8307 4.637483 ATGCTCCCATTTTGTCATAACG 57.363 40.909 0.00 0.00 0.00 3.18
3589 8308 3.417101 TGCTCCCATTTTGTCATAACGT 58.583 40.909 0.00 0.00 0.00 3.99
3645 8364 2.665056 TCGTACTGATCGCGATTCTC 57.335 50.000 24.55 12.40 0.00 2.87
3997 8716 3.704151 CCGTCCCGGTCTAGGTTT 58.296 61.111 0.00 0.00 42.73 3.27
4075 8794 7.782049 TCTTGGATGTACACTAATTCCTACTG 58.218 38.462 12.50 2.66 0.00 2.74
4142 8861 8.753497 AGATGTAATTACTTGGGAAGGATTTC 57.247 34.615 16.33 0.00 0.00 2.17
4275 8996 5.992217 ACCTGAACTTCTACATTCAACAGTC 59.008 40.000 0.00 0.00 34.52 3.51
4300 9021 6.253512 CAGTTCATCGTATGATCTTTCGAACA 59.746 38.462 19.39 0.00 37.25 3.18
4402 9124 0.738975 TCGGATGCCAAGTCTACTCG 59.261 55.000 0.00 0.00 0.00 4.18
4403 9125 0.456221 CGGATGCCAAGTCTACTCGT 59.544 55.000 0.00 0.00 0.00 4.18
4424 9146 4.202158 CGTGTGTGATGTTTCGTGAAAAAG 59.798 41.667 0.00 0.00 31.33 2.27
4445 9169 4.261801 AGAAACCAGGAAATGTATCCGTG 58.738 43.478 0.00 0.00 44.60 4.94
4458 9182 3.866910 TGTATCCGTGGCGAAGAAAATAC 59.133 43.478 0.00 0.00 0.00 1.89
4465 9189 3.994392 GTGGCGAAGAAAATACAGTCTGA 59.006 43.478 6.91 0.00 0.00 3.27
4467 9191 3.060895 GGCGAAGAAAATACAGTCTGACG 59.939 47.826 6.91 0.34 0.00 4.35
4472 9196 6.248839 CGAAGAAAATACAGTCTGACGTACTC 59.751 42.308 6.91 10.16 0.00 2.59
4482 9206 3.192844 GTCTGACGTACTCTCCATCCAAA 59.807 47.826 0.00 0.00 0.00 3.28
4578 9309 4.221703 CAGAAGTAGATTGGACACTCAGGT 59.778 45.833 0.00 0.00 0.00 4.00
4587 9318 4.487714 TGGACACTCAGGTTTGATATCC 57.512 45.455 0.00 0.00 32.82 2.59
4588 9319 3.199946 TGGACACTCAGGTTTGATATCCC 59.800 47.826 0.00 0.00 31.91 3.85
4595 9326 6.604795 CACTCAGGTTTGATATCCCAAAATCT 59.395 38.462 0.00 0.00 37.72 2.40
4666 9397 3.971702 GGAGCACCCAGTTGCCCT 61.972 66.667 0.00 0.00 44.14 5.19
4668 9399 1.378762 GAGCACCCAGTTGCCCTAA 59.621 57.895 0.00 0.00 44.14 2.69
4712 9444 3.066760 GCTTCACAAGTTTTGGCTAGTGT 59.933 43.478 0.00 0.00 34.12 3.55
4730 9462 8.198109 GGCTAGTGTATCACTTCTCTGATTTAA 58.802 37.037 7.70 0.00 42.59 1.52
4941 9681 2.938451 CTCTGCCATCGCATAGAACAAA 59.062 45.455 0.00 0.00 46.11 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.848886 TTTTTCCTCCTCCTCCGGCC 61.849 60.000 0.00 0.00 0.00 6.13
59 60 0.314302 AGCGTATAAGTAGCGGGCAG 59.686 55.000 0.00 0.00 35.78 4.85
91 94 2.766229 GAGGGGAGAGGGGTGAGC 60.766 72.222 0.00 0.00 0.00 4.26
92 95 1.687493 GTGAGGGGAGAGGGGTGAG 60.687 68.421 0.00 0.00 0.00 3.51
93 96 2.043527 TTGTGAGGGGAGAGGGGTGA 62.044 60.000 0.00 0.00 0.00 4.02
94 97 0.916358 ATTGTGAGGGGAGAGGGGTG 60.916 60.000 0.00 0.00 0.00 4.61
95 98 0.621862 GATTGTGAGGGGAGAGGGGT 60.622 60.000 0.00 0.00 0.00 4.95
100 103 2.367202 GGGCGATTGTGAGGGGAGA 61.367 63.158 0.00 0.00 0.00 3.71
182 186 2.290367 CTCAGCTCAGTCAGTCGGATAG 59.710 54.545 0.00 0.00 0.00 2.08
184 188 1.102154 CTCAGCTCAGTCAGTCGGAT 58.898 55.000 0.00 0.00 0.00 4.18
185 189 0.250945 ACTCAGCTCAGTCAGTCGGA 60.251 55.000 0.00 0.00 0.00 4.55
189 193 0.972883 GGGAACTCAGCTCAGTCAGT 59.027 55.000 0.00 0.00 0.00 3.41
190 194 0.108898 CGGGAACTCAGCTCAGTCAG 60.109 60.000 0.00 0.00 0.00 3.51
191 195 0.827925 ACGGGAACTCAGCTCAGTCA 60.828 55.000 0.00 0.00 0.00 3.41
204 208 3.438781 CGGAAGAAATCAAATCACGGGAA 59.561 43.478 0.00 0.00 0.00 3.97
205 209 3.006940 CGGAAGAAATCAAATCACGGGA 58.993 45.455 0.00 0.00 0.00 5.14
231 235 0.098376 GCAAGCAGGATTGAAGCGAG 59.902 55.000 0.81 0.00 31.55 5.03
232 236 0.321919 AGCAAGCAGGATTGAAGCGA 60.322 50.000 0.81 0.00 31.55 4.93
277 283 2.158370 AGGGGGAAAACAACGGAATCTT 60.158 45.455 0.00 0.00 0.00 2.40
316 322 0.030101 TAGCACACAAAACGCTTGCC 59.970 50.000 0.00 0.00 37.20 4.52
397 411 2.945008 ACAACAGCATAACATCCATCCG 59.055 45.455 0.00 0.00 0.00 4.18
407 421 7.552687 CCAGAACCTAGATTAACAACAGCATAA 59.447 37.037 0.00 0.00 0.00 1.90
415 441 6.640518 CAGCTACCAGAACCTAGATTAACAA 58.359 40.000 0.00 0.00 0.00 2.83
418 444 4.202121 CGCAGCTACCAGAACCTAGATTAA 60.202 45.833 0.00 0.00 0.00 1.40
474 500 8.977267 TCTTCAGATTACTCTACTACCTAACC 57.023 38.462 0.00 0.00 0.00 2.85
504 536 3.198489 GCGCTCCCACTAGCTTGC 61.198 66.667 0.00 0.00 40.49 4.01
511 553 2.348998 CCTCAAAGCGCTCCCACT 59.651 61.111 12.06 0.00 0.00 4.00
512 554 2.747855 CCCTCAAAGCGCTCCCAC 60.748 66.667 12.06 0.00 0.00 4.61
520 562 1.821332 CGATCCAGGCCCTCAAAGC 60.821 63.158 0.00 0.00 0.00 3.51
531 579 1.039068 AGAGCCATCTGTCGATCCAG 58.961 55.000 0.00 0.00 33.30 3.86
540 588 3.540314 AGAAGCAACTAGAGCCATCTG 57.460 47.619 0.00 0.00 36.96 2.90
559 607 4.384647 CCATTCCTTCCTCCCTTGAACTAG 60.385 50.000 0.00 0.00 0.00 2.57
565 613 1.213926 CCTCCATTCCTTCCTCCCTTG 59.786 57.143 0.00 0.00 0.00 3.61
566 614 1.082879 TCCTCCATTCCTTCCTCCCTT 59.917 52.381 0.00 0.00 0.00 3.95
574 623 2.383338 ACCAACCATTCCTCCATTCCTT 59.617 45.455 0.00 0.00 0.00 3.36
576 625 2.379005 GACCAACCATTCCTCCATTCC 58.621 52.381 0.00 0.00 0.00 3.01
580 629 1.002624 GCGACCAACCATTCCTCCA 60.003 57.895 0.00 0.00 0.00 3.86
581 630 1.002624 TGCGACCAACCATTCCTCC 60.003 57.895 0.00 0.00 0.00 4.30
584 633 1.303317 AGGTGCGACCAACCATTCC 60.303 57.895 7.86 0.00 41.95 3.01
585 634 0.889186 ACAGGTGCGACCAACCATTC 60.889 55.000 7.86 0.00 41.95 2.67
586 635 0.398696 TACAGGTGCGACCAACCATT 59.601 50.000 7.86 0.00 41.95 3.16
587 636 0.036388 CTACAGGTGCGACCAACCAT 60.036 55.000 7.86 0.00 41.95 3.55
596 648 1.148310 CCAGACAAACTACAGGTGCG 58.852 55.000 0.00 0.00 0.00 5.34
631 686 2.836981 AGACAAGAGTTCCTCCTGATGG 59.163 50.000 0.00 0.00 0.00 3.51
679 739 2.674357 CAAGCCTTGGCATGTAAAATGC 59.326 45.455 14.54 1.65 43.85 3.56
710 794 6.676237 ACAATTTGTTTCATTTTGGACACC 57.324 33.333 0.00 0.00 0.00 4.16
928 5291 7.454260 AAGAGACAGGAAATAATTGTTGTCC 57.546 36.000 2.26 5.14 36.49 4.02
1122 5489 1.736612 GCTTCAGGAGCTTCCTCTTG 58.263 55.000 0.00 0.00 45.66 3.02
1206 5573 0.191064 TCCTGGAGGAAGACACACCT 59.809 55.000 0.00 0.00 42.18 4.00
1299 5666 2.820059 TAGCCTCCACGATAGCAATG 57.180 50.000 0.00 0.00 42.67 2.82
1302 5669 2.163509 GAGATAGCCTCCACGATAGCA 58.836 52.381 0.00 0.00 36.09 3.49
1425 5792 1.056700 AGTCCTCCTGCTGGTTGTGT 61.057 55.000 9.73 0.00 34.23 3.72
1524 5891 0.689080 TGCCACCAGATCCTCCTCTC 60.689 60.000 0.00 0.00 0.00 3.20
1533 5900 1.930133 TCCACCCATGCCACCAGAT 60.930 57.895 0.00 0.00 0.00 2.90
1926 6293 5.231702 CCAACAGCATCAATTTCATCAACA 58.768 37.500 0.00 0.00 0.00 3.33
2085 6452 4.939439 GGTCTAAGTAAAGCGGAATCCAAA 59.061 41.667 0.00 0.00 0.00 3.28
2100 6467 1.968493 TCAAAGCGTCCAGGTCTAAGT 59.032 47.619 0.00 0.00 0.00 2.24
2151 6518 9.533831 AAATTCCAGACTGATGTTATTAACCTT 57.466 29.630 3.32 0.00 0.00 3.50
2158 6525 9.807649 GCAAATTAAATTCCAGACTGATGTTAT 57.192 29.630 3.32 0.00 0.00 1.89
2159 6526 8.801299 TGCAAATTAAATTCCAGACTGATGTTA 58.199 29.630 3.32 0.00 0.00 2.41
2160 6527 7.669427 TGCAAATTAAATTCCAGACTGATGTT 58.331 30.769 3.32 0.00 0.00 2.71
2161 6528 7.230849 TGCAAATTAAATTCCAGACTGATGT 57.769 32.000 3.32 0.00 0.00 3.06
2162 6529 7.223971 CCATGCAAATTAAATTCCAGACTGATG 59.776 37.037 3.32 0.00 0.00 3.07
2163 6530 7.093201 ACCATGCAAATTAAATTCCAGACTGAT 60.093 33.333 3.32 0.00 0.00 2.90
2164 6531 6.211184 ACCATGCAAATTAAATTCCAGACTGA 59.789 34.615 3.32 0.00 0.00 3.41
2165 6532 6.400568 ACCATGCAAATTAAATTCCAGACTG 58.599 36.000 0.00 0.00 0.00 3.51
2166 6533 6.438425 AGACCATGCAAATTAAATTCCAGACT 59.562 34.615 0.00 0.00 0.00 3.24
2167 6534 6.633856 AGACCATGCAAATTAAATTCCAGAC 58.366 36.000 0.00 0.00 0.00 3.51
2168 6535 6.855763 AGACCATGCAAATTAAATTCCAGA 57.144 33.333 0.00 0.00 0.00 3.86
2169 6536 8.872845 GTTTAGACCATGCAAATTAAATTCCAG 58.127 33.333 0.00 0.00 0.00 3.86
2170 6537 7.821846 GGTTTAGACCATGCAAATTAAATTCCA 59.178 33.333 0.00 0.00 45.77 3.53
2171 6538 8.196802 GGTTTAGACCATGCAAATTAAATTCC 57.803 34.615 0.00 0.00 45.77 3.01
2187 6554 8.465273 AAGAATATGCAAATAGGGTTTAGACC 57.535 34.615 0.00 0.00 45.75 3.85
2194 6561 8.526147 GCAATGATAAGAATATGCAAATAGGGT 58.474 33.333 0.00 0.00 34.10 4.34
2195 6562 8.525316 TGCAATGATAAGAATATGCAAATAGGG 58.475 33.333 0.00 0.00 40.47 3.53
2196 6563 9.917129 TTGCAATGATAAGAATATGCAAATAGG 57.083 29.630 8.37 0.00 46.93 2.57
2202 6569 9.687210 GAAGATTTGCAATGATAAGAATATGCA 57.313 29.630 0.00 0.00 41.57 3.96
2203 6570 9.136952 GGAAGATTTGCAATGATAAGAATATGC 57.863 33.333 0.00 0.00 0.00 3.14
2206 6573 8.355169 GCAGGAAGATTTGCAATGATAAGAATA 58.645 33.333 0.00 0.00 40.02 1.75
2207 6574 7.147794 TGCAGGAAGATTTGCAATGATAAGAAT 60.148 33.333 0.00 0.00 46.42 2.40
2208 6575 6.153170 TGCAGGAAGATTTGCAATGATAAGAA 59.847 34.615 0.00 0.00 46.42 2.52
2209 6576 5.653330 TGCAGGAAGATTTGCAATGATAAGA 59.347 36.000 0.00 0.00 46.42 2.10
2210 6577 5.898174 TGCAGGAAGATTTGCAATGATAAG 58.102 37.500 0.00 0.00 46.42 1.73
2211 6578 5.918426 TGCAGGAAGATTTGCAATGATAA 57.082 34.783 0.00 0.00 46.42 1.75
2219 6586 3.721035 ACACTTTTGCAGGAAGATTTGC 58.279 40.909 16.11 0.00 40.67 3.68
2220 6587 6.200854 GGTAAACACTTTTGCAGGAAGATTTG 59.799 38.462 16.11 8.46 0.00 2.32
2221 6588 6.098266 AGGTAAACACTTTTGCAGGAAGATTT 59.902 34.615 16.11 15.83 0.00 2.17
2222 6589 5.598417 AGGTAAACACTTTTGCAGGAAGATT 59.402 36.000 16.11 10.90 0.00 2.40
2223 6590 5.140454 AGGTAAACACTTTTGCAGGAAGAT 58.860 37.500 16.11 4.11 0.00 2.40
2224 6591 4.532834 AGGTAAACACTTTTGCAGGAAGA 58.467 39.130 16.11 0.00 0.00 2.87
2225 6592 4.918810 AGGTAAACACTTTTGCAGGAAG 57.081 40.909 9.58 9.58 0.00 3.46
2226 6593 5.889289 AGTAAGGTAAACACTTTTGCAGGAA 59.111 36.000 0.00 0.00 0.00 3.36
2227 6594 5.442391 AGTAAGGTAAACACTTTTGCAGGA 58.558 37.500 0.00 0.00 0.00 3.86
2228 6595 5.767816 AGTAAGGTAAACACTTTTGCAGG 57.232 39.130 0.00 0.00 0.00 4.85
2229 6596 7.033185 ACAAAGTAAGGTAAACACTTTTGCAG 58.967 34.615 0.00 0.00 39.78 4.41
2230 6597 6.926313 ACAAAGTAAGGTAAACACTTTTGCA 58.074 32.000 0.00 0.00 39.78 4.08
2231 6598 7.758076 AGAACAAAGTAAGGTAAACACTTTTGC 59.242 33.333 0.00 0.00 39.78 3.68
2232 6599 9.634163 AAGAACAAAGTAAGGTAAACACTTTTG 57.366 29.630 0.00 0.00 39.78 2.44
2234 6601 9.850628 GAAAGAACAAAGTAAGGTAAACACTTT 57.149 29.630 0.00 0.00 41.86 2.66
2235 6602 9.239551 AGAAAGAACAAAGTAAGGTAAACACTT 57.760 29.630 0.00 0.00 34.03 3.16
2236 6603 8.803397 AGAAAGAACAAAGTAAGGTAAACACT 57.197 30.769 0.00 0.00 0.00 3.55
2248 6615 9.713713 GAGGATCTTAGTAAGAAAGAACAAAGT 57.286 33.333 16.37 0.00 41.63 2.66
2249 6616 9.712305 TGAGGATCTTAGTAAGAAAGAACAAAG 57.288 33.333 16.37 0.00 41.63 2.77
2250 6617 9.712305 CTGAGGATCTTAGTAAGAAAGAACAAA 57.288 33.333 16.37 0.00 41.63 2.83
2251 6618 8.314751 CCTGAGGATCTTAGTAAGAAAGAACAA 58.685 37.037 16.37 0.05 41.63 2.83
2252 6619 7.455008 ACCTGAGGATCTTAGTAAGAAAGAACA 59.545 37.037 16.37 11.59 41.63 3.18
2253 6620 7.842982 ACCTGAGGATCTTAGTAAGAAAGAAC 58.157 38.462 16.37 8.16 41.63 3.01
2254 6621 8.437274 AACCTGAGGATCTTAGTAAGAAAGAA 57.563 34.615 16.37 1.95 41.63 2.52
2255 6622 7.896496 AGAACCTGAGGATCTTAGTAAGAAAGA 59.104 37.037 16.37 0.00 41.63 2.52
2256 6623 8.073467 AGAACCTGAGGATCTTAGTAAGAAAG 57.927 38.462 16.37 9.06 41.63 2.62
2257 6624 8.437274 AAGAACCTGAGGATCTTAGTAAGAAA 57.563 34.615 20.79 0.00 41.84 2.52
2258 6625 8.437274 AAAGAACCTGAGGATCTTAGTAAGAA 57.563 34.615 22.14 0.00 42.61 2.52
2259 6626 7.896496 AGAAAGAACCTGAGGATCTTAGTAAGA 59.104 37.037 22.14 14.87 42.61 2.10
2260 6627 8.073467 AGAAAGAACCTGAGGATCTTAGTAAG 57.927 38.462 22.14 3.29 42.61 2.34
2261 6628 9.716556 ATAGAAAGAACCTGAGGATCTTAGTAA 57.283 33.333 22.14 10.31 42.61 2.24
2262 6629 9.357161 GATAGAAAGAACCTGAGGATCTTAGTA 57.643 37.037 22.14 16.51 42.61 1.82
2263 6630 7.289084 GGATAGAAAGAACCTGAGGATCTTAGT 59.711 40.741 22.14 15.11 42.61 2.24
2264 6631 7.288852 TGGATAGAAAGAACCTGAGGATCTTAG 59.711 40.741 22.14 0.00 42.61 2.18
2265 6632 7.132805 TGGATAGAAAGAACCTGAGGATCTTA 58.867 38.462 22.14 9.30 42.61 2.10
2266 6633 5.966935 TGGATAGAAAGAACCTGAGGATCTT 59.033 40.000 17.19 17.19 44.75 2.40
2267 6634 5.533112 TGGATAGAAAGAACCTGAGGATCT 58.467 41.667 4.99 5.18 36.37 2.75
2268 6635 5.741673 GCTGGATAGAAAGAACCTGAGGATC 60.742 48.000 4.99 2.04 0.00 3.36
2269 6636 4.102367 GCTGGATAGAAAGAACCTGAGGAT 59.898 45.833 4.99 0.00 0.00 3.24
2270 6637 3.452627 GCTGGATAGAAAGAACCTGAGGA 59.547 47.826 4.99 0.00 0.00 3.71
2271 6638 3.454082 AGCTGGATAGAAAGAACCTGAGG 59.546 47.826 0.00 0.00 0.00 3.86
2272 6639 4.751767 AGCTGGATAGAAAGAACCTGAG 57.248 45.455 0.00 0.00 0.00 3.35
2273 6640 5.505181 AAAGCTGGATAGAAAGAACCTGA 57.495 39.130 0.00 0.00 0.00 3.86
2274 6641 6.581171 AAAAAGCTGGATAGAAAGAACCTG 57.419 37.500 0.00 0.00 0.00 4.00
2299 6666 9.533831 AATTCCAGACTGATGTTATTAACCTTT 57.466 29.630 3.32 0.00 0.00 3.11
2347 6714 9.613428 TTCCAGACTGATGTTATTAACCTTATG 57.387 33.333 3.32 0.00 0.00 1.90
2350 6717 9.533831 AAATTCCAGACTGATGTTATTAACCTT 57.466 29.630 3.32 0.00 0.00 3.50
2357 6724 9.807649 GCAAATTAAATTCCAGACTGATGTTAT 57.192 29.630 3.32 0.00 0.00 1.89
2358 6725 8.801299 TGCAAATTAAATTCCAGACTGATGTTA 58.199 29.630 3.32 0.00 0.00 2.41
2359 6726 7.669427 TGCAAATTAAATTCCAGACTGATGTT 58.331 30.769 3.32 0.00 0.00 2.71
2360 6727 7.230849 TGCAAATTAAATTCCAGACTGATGT 57.769 32.000 3.32 0.00 0.00 3.06
2361 6728 7.762615 ACATGCAAATTAAATTCCAGACTGATG 59.237 33.333 3.32 0.00 0.00 3.07
2362 6729 7.844009 ACATGCAAATTAAATTCCAGACTGAT 58.156 30.769 3.32 0.00 0.00 2.90
2363 6730 7.230849 ACATGCAAATTAAATTCCAGACTGA 57.769 32.000 3.32 0.00 0.00 3.41
2364 6731 6.532657 GGACATGCAAATTAAATTCCAGACTG 59.467 38.462 0.00 0.00 0.00 3.51
2365 6732 6.351286 GGGACATGCAAATTAAATTCCAGACT 60.351 38.462 0.00 0.00 0.00 3.24
2366 6733 5.812127 GGGACATGCAAATTAAATTCCAGAC 59.188 40.000 0.00 0.00 0.00 3.51
2367 6734 5.721000 AGGGACATGCAAATTAAATTCCAGA 59.279 36.000 0.00 0.00 0.00 3.86
2368 6735 5.981174 AGGGACATGCAAATTAAATTCCAG 58.019 37.500 0.00 0.00 0.00 3.86
2369 6736 7.673641 ATAGGGACATGCAAATTAAATTCCA 57.326 32.000 0.00 0.00 0.00 3.53
2370 6737 8.962884 AAATAGGGACATGCAAATTAAATTCC 57.037 30.769 0.00 0.00 0.00 3.01
2371 6738 9.045223 GGAAATAGGGACATGCAAATTAAATTC 57.955 33.333 0.00 0.00 0.00 2.17
2372 6739 8.547173 TGGAAATAGGGACATGCAAATTAAATT 58.453 29.630 0.00 0.00 0.00 1.82
2373 6740 8.088463 TGGAAATAGGGACATGCAAATTAAAT 57.912 30.769 0.00 0.00 0.00 1.40
2374 6741 7.487822 TGGAAATAGGGACATGCAAATTAAA 57.512 32.000 0.00 0.00 0.00 1.52
2375 6742 7.673641 ATGGAAATAGGGACATGCAAATTAA 57.326 32.000 0.00 0.00 0.00 1.40
2376 6743 8.954834 ATATGGAAATAGGGACATGCAAATTA 57.045 30.769 0.00 0.00 0.00 1.40
2377 6744 7.860649 ATATGGAAATAGGGACATGCAAATT 57.139 32.000 0.00 0.00 0.00 1.82
2378 6745 7.510001 TGAATATGGAAATAGGGACATGCAAAT 59.490 33.333 0.00 0.00 0.00 2.32
2379 6746 6.838090 TGAATATGGAAATAGGGACATGCAAA 59.162 34.615 0.00 0.00 0.00 3.68
2380 6747 6.372104 TGAATATGGAAATAGGGACATGCAA 58.628 36.000 0.00 0.00 0.00 4.08
2381 6748 5.951204 TGAATATGGAAATAGGGACATGCA 58.049 37.500 0.00 0.00 0.00 3.96
2382 6749 5.416952 CCTGAATATGGAAATAGGGACATGC 59.583 44.000 0.00 0.00 0.00 4.06
2383 6750 5.948162 CCCTGAATATGGAAATAGGGACATG 59.052 44.000 0.00 0.00 46.19 3.21
2384 6751 5.015603 CCCCTGAATATGGAAATAGGGACAT 59.984 44.000 8.64 0.00 46.19 3.06
2385 6752 4.353788 CCCCTGAATATGGAAATAGGGACA 59.646 45.833 8.64 0.00 46.19 4.02
2386 6753 4.354087 ACCCCTGAATATGGAAATAGGGAC 59.646 45.833 8.64 0.00 46.19 4.46
2387 6754 4.353788 CACCCCTGAATATGGAAATAGGGA 59.646 45.833 8.64 0.00 46.19 4.20
2388 6755 4.666512 CACCCCTGAATATGGAAATAGGG 58.333 47.826 0.00 0.00 43.57 3.53
2389 6756 4.082125 GCACCCCTGAATATGGAAATAGG 58.918 47.826 0.00 0.00 0.00 2.57
2390 6757 4.728772 TGCACCCCTGAATATGGAAATAG 58.271 43.478 0.00 0.00 0.00 1.73
2391 6758 4.805140 TGCACCCCTGAATATGGAAATA 57.195 40.909 0.00 0.00 0.00 1.40
2392 6759 3.686227 TGCACCCCTGAATATGGAAAT 57.314 42.857 0.00 0.00 0.00 2.17
2393 6760 3.298619 CATGCACCCCTGAATATGGAAA 58.701 45.455 0.00 0.00 0.00 3.13
2394 6761 2.424667 CCATGCACCCCTGAATATGGAA 60.425 50.000 0.00 0.00 37.79 3.53
2395 6762 1.145531 CCATGCACCCCTGAATATGGA 59.854 52.381 0.00 0.00 37.79 3.41
2396 6763 1.145531 TCCATGCACCCCTGAATATGG 59.854 52.381 0.00 0.00 37.11 2.74
2397 6764 2.662535 TCCATGCACCCCTGAATATG 57.337 50.000 0.00 0.00 0.00 1.78
2398 6765 2.754186 GCTTCCATGCACCCCTGAATAT 60.754 50.000 0.00 0.00 0.00 1.28
2399 6766 1.410083 GCTTCCATGCACCCCTGAATA 60.410 52.381 0.00 0.00 0.00 1.75
2400 6767 0.685458 GCTTCCATGCACCCCTGAAT 60.685 55.000 0.00 0.00 0.00 2.57
2401 6768 1.304381 GCTTCCATGCACCCCTGAA 60.304 57.895 0.00 0.00 0.00 3.02
2402 6769 1.792757 AAGCTTCCATGCACCCCTGA 61.793 55.000 0.00 0.00 34.99 3.86
2403 6770 0.901580 AAAGCTTCCATGCACCCCTG 60.902 55.000 0.00 0.00 34.99 4.45
2404 6771 0.901580 CAAAGCTTCCATGCACCCCT 60.902 55.000 0.00 0.00 34.99 4.79
2405 6772 1.593265 CAAAGCTTCCATGCACCCC 59.407 57.895 0.00 0.00 34.99 4.95
2406 6773 1.079612 GCAAAGCTTCCATGCACCC 60.080 57.895 15.16 0.00 39.81 4.61
2407 6774 1.176527 TAGCAAAGCTTCCATGCACC 58.823 50.000 20.61 0.00 42.45 5.01
2408 6775 2.223665 GGATAGCAAAGCTTCCATGCAC 60.224 50.000 20.61 12.34 42.45 4.57
2409 6776 2.026641 GGATAGCAAAGCTTCCATGCA 58.973 47.619 20.61 9.41 42.45 3.96
2410 6777 2.026641 TGGATAGCAAAGCTTCCATGC 58.973 47.619 12.71 12.71 39.22 4.06
2412 6779 3.635373 CACATGGATAGCAAAGCTTCCAT 59.365 43.478 20.18 20.18 46.59 3.41
2413 6780 3.018856 CACATGGATAGCAAAGCTTCCA 58.981 45.455 18.33 18.33 43.79 3.53
2414 6781 2.223665 GCACATGGATAGCAAAGCTTCC 60.224 50.000 0.00 0.00 40.44 3.46
2415 6782 2.223665 GGCACATGGATAGCAAAGCTTC 60.224 50.000 0.00 0.00 40.44 3.86
2416 6783 1.753073 GGCACATGGATAGCAAAGCTT 59.247 47.619 0.00 0.00 40.44 3.74
2417 6784 1.341285 TGGCACATGGATAGCAAAGCT 60.341 47.619 0.00 0.00 43.41 3.74
2418 6785 1.066605 CTGGCACATGGATAGCAAAGC 59.933 52.381 0.00 0.00 38.20 3.51
2419 6786 2.617308 CTCTGGCACATGGATAGCAAAG 59.383 50.000 0.00 0.00 38.20 2.77
2420 6787 2.646930 CTCTGGCACATGGATAGCAAA 58.353 47.619 0.00 0.00 38.20 3.68
2421 6788 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
2422 6789 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
2423 6790 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
2424 6791 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
2425 6792 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
2426 6793 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
2427 6794 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
2428 6795 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
2429 6796 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
2430 6797 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
2431 6798 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
2432 6799 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
2433 6800 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
2434 6801 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
2442 6809 1.202348 AGATCTCGCGACCAACTCATG 60.202 52.381 3.71 0.00 0.00 3.07
2443 6810 1.107114 AGATCTCGCGACCAACTCAT 58.893 50.000 3.71 0.00 0.00 2.90
2444 6811 0.888619 AAGATCTCGCGACCAACTCA 59.111 50.000 3.71 0.00 0.00 3.41
2445 6812 2.846039 TAAGATCTCGCGACCAACTC 57.154 50.000 3.71 0.00 0.00 3.01
2446 6813 2.223829 CCATAAGATCTCGCGACCAACT 60.224 50.000 3.71 0.00 0.00 3.16
2447 6814 2.128035 CCATAAGATCTCGCGACCAAC 58.872 52.381 3.71 0.00 0.00 3.77
2448 6815 2.028876 TCCATAAGATCTCGCGACCAA 58.971 47.619 3.71 0.00 0.00 3.67
2449 6816 1.687563 TCCATAAGATCTCGCGACCA 58.312 50.000 3.71 0.00 0.00 4.02
2450 6817 3.305398 AATCCATAAGATCTCGCGACC 57.695 47.619 3.71 0.00 32.47 4.79
2451 6818 4.149046 GTGAAATCCATAAGATCTCGCGAC 59.851 45.833 3.71 0.00 32.47 5.19
2452 6819 4.299155 GTGAAATCCATAAGATCTCGCGA 58.701 43.478 9.26 9.26 32.47 5.87
2453 6820 3.430218 GGTGAAATCCATAAGATCTCGCG 59.570 47.826 0.00 0.00 33.91 5.87
2454 6821 4.636249 AGGTGAAATCCATAAGATCTCGC 58.364 43.478 0.00 0.00 32.57 5.03
2455 6822 6.095432 AGAGGTGAAATCCATAAGATCTCG 57.905 41.667 0.00 0.00 32.47 4.04
2456 6823 7.096551 GCTAGAGGTGAAATCCATAAGATCTC 58.903 42.308 0.00 0.00 32.47 2.75
2457 6824 6.013812 GGCTAGAGGTGAAATCCATAAGATCT 60.014 42.308 0.00 0.00 32.47 2.75
2458 6825 6.013812 AGGCTAGAGGTGAAATCCATAAGATC 60.014 42.308 0.00 0.00 32.47 2.75
2459 6826 5.848921 AGGCTAGAGGTGAAATCCATAAGAT 59.151 40.000 0.00 0.00 36.48 2.40
2460 6827 5.219739 AGGCTAGAGGTGAAATCCATAAGA 58.780 41.667 0.00 0.00 0.00 2.10
2461 6828 5.559148 AGGCTAGAGGTGAAATCCATAAG 57.441 43.478 0.00 0.00 0.00 1.73
2462 6829 5.307196 GGTAGGCTAGAGGTGAAATCCATAA 59.693 44.000 0.00 0.00 0.00 1.90
2463 6830 4.838986 GGTAGGCTAGAGGTGAAATCCATA 59.161 45.833 0.00 0.00 0.00 2.74
2464 6831 3.648545 GGTAGGCTAGAGGTGAAATCCAT 59.351 47.826 0.00 0.00 0.00 3.41
2465 6832 3.039011 GGTAGGCTAGAGGTGAAATCCA 58.961 50.000 0.00 0.00 0.00 3.41
2466 6833 2.369203 GGGTAGGCTAGAGGTGAAATCC 59.631 54.545 0.00 0.00 0.00 3.01
2467 6834 2.369203 GGGGTAGGCTAGAGGTGAAATC 59.631 54.545 0.00 0.00 0.00 2.17
2468 6835 2.293586 TGGGGTAGGCTAGAGGTGAAAT 60.294 50.000 0.00 0.00 0.00 2.17
2469 6836 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
2470 6837 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
2471 6838 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
2472 6839 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
2473 6840 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
2474 6841 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
2475 6842 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
2476 6843 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
2477 6844 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
2478 6845 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
2479 6846 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
2488 6855 5.213891 AGCCTTTAATCCCAAACAAGTTG 57.786 39.130 0.00 0.00 36.94 3.16
2489 6856 5.887214 AAGCCTTTAATCCCAAACAAGTT 57.113 34.783 0.00 0.00 0.00 2.66
2490 6857 5.130311 ACAAAGCCTTTAATCCCAAACAAGT 59.870 36.000 0.00 0.00 0.00 3.16
2491 6858 5.610398 ACAAAGCCTTTAATCCCAAACAAG 58.390 37.500 0.00 0.00 0.00 3.16
2492 6859 5.622346 ACAAAGCCTTTAATCCCAAACAA 57.378 34.783 0.00 0.00 0.00 2.83
2493 6860 5.104735 ACAACAAAGCCTTTAATCCCAAACA 60.105 36.000 0.00 0.00 0.00 2.83
2494 6861 5.364778 ACAACAAAGCCTTTAATCCCAAAC 58.635 37.500 0.00 0.00 0.00 2.93
2495 6862 5.622346 ACAACAAAGCCTTTAATCCCAAA 57.378 34.783 0.00 0.00 0.00 3.28
2496 6863 5.104735 ACAACAACAAAGCCTTTAATCCCAA 60.105 36.000 0.00 0.00 0.00 4.12
2497 6864 4.407296 ACAACAACAAAGCCTTTAATCCCA 59.593 37.500 0.00 0.00 0.00 4.37
2498 6865 4.956085 ACAACAACAAAGCCTTTAATCCC 58.044 39.130 0.00 0.00 0.00 3.85
2499 6866 5.815222 ACAACAACAACAAAGCCTTTAATCC 59.185 36.000 0.00 0.00 0.00 3.01
2500 6867 6.902224 ACAACAACAACAAAGCCTTTAATC 57.098 33.333 0.00 0.00 0.00 1.75
2501 6868 6.652900 ACAACAACAACAACAAAGCCTTTAAT 59.347 30.769 0.00 0.00 0.00 1.40
2502 6869 5.992217 ACAACAACAACAACAAAGCCTTTAA 59.008 32.000 0.00 0.00 0.00 1.52
2503 6870 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
2504 6871 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
2505 6872 3.993736 GACAACAACAACAACAAAGCCTT 59.006 39.130 0.00 0.00 0.00 4.35
2506 6873 3.584834 GACAACAACAACAACAAAGCCT 58.415 40.909 0.00 0.00 0.00 4.58
2507 6874 2.670905 GGACAACAACAACAACAAAGCC 59.329 45.455 0.00 0.00 0.00 4.35
2508 6875 2.670905 GGGACAACAACAACAACAAAGC 59.329 45.455 0.00 0.00 0.00 3.51
2509 6876 4.186856 AGGGACAACAACAACAACAAAG 57.813 40.909 0.00 0.00 0.00 2.77
2510 6877 5.923733 ATAGGGACAACAACAACAACAAA 57.076 34.783 0.00 0.00 0.00 2.83
2511 6878 5.923733 AATAGGGACAACAACAACAACAA 57.076 34.783 0.00 0.00 0.00 2.83
2512 6879 5.163499 GGAAATAGGGACAACAACAACAACA 60.163 40.000 0.00 0.00 0.00 3.33
2513 6880 5.163499 TGGAAATAGGGACAACAACAACAAC 60.163 40.000 0.00 0.00 0.00 3.32
2514 6881 4.956700 TGGAAATAGGGACAACAACAACAA 59.043 37.500 0.00 0.00 0.00 2.83
2515 6882 4.537751 TGGAAATAGGGACAACAACAACA 58.462 39.130 0.00 0.00 0.00 3.33
2516 6883 5.722021 ATGGAAATAGGGACAACAACAAC 57.278 39.130 0.00 0.00 0.00 3.32
2517 6884 7.893302 AGAATATGGAAATAGGGACAACAACAA 59.107 33.333 0.00 0.00 0.00 2.83
2518 6885 7.410174 AGAATATGGAAATAGGGACAACAACA 58.590 34.615 0.00 0.00 0.00 3.33
2519 6886 7.881775 AGAATATGGAAATAGGGACAACAAC 57.118 36.000 0.00 0.00 0.00 3.32
2521 6888 9.793259 GATAAGAATATGGAAATAGGGACAACA 57.207 33.333 0.00 0.00 0.00 3.33
2522 6889 9.793259 TGATAAGAATATGGAAATAGGGACAAC 57.207 33.333 0.00 0.00 0.00 3.32
2526 6893 9.466497 GCAATGATAAGAATATGGAAATAGGGA 57.534 33.333 0.00 0.00 0.00 4.20
2527 6894 9.246670 TGCAATGATAAGAATATGGAAATAGGG 57.753 33.333 0.00 0.00 0.00 3.53
2554 6921 9.691362 TTTTCTAAAATCTGTTGCAGGAATAAC 57.309 29.630 0.00 0.00 31.51 1.89
2602 6972 3.644265 TGGACTAGAGGTTTACAAGCACA 59.356 43.478 0.00 0.00 0.00 4.57
2618 6988 6.437477 TCAAGCTCTGAACTAGAATTGGACTA 59.563 38.462 0.00 0.00 34.91 2.59
3057 7737 2.369668 TGAAGATTCCCCCTTACCCA 57.630 50.000 0.00 0.00 0.00 4.51
3065 7745 4.408182 TTCGAAGAGATGAAGATTCCCC 57.592 45.455 0.00 0.00 38.43 4.81
3067 7747 4.994217 GGGATTCGAAGAGATGAAGATTCC 59.006 45.833 3.35 0.59 38.43 3.01
3274 7993 1.202521 CCAGGTTGTTGGGAAGTTTGC 60.203 52.381 0.00 0.00 34.46 3.68
3645 8364 2.044555 CACCACCATCTGCAGCAGG 61.045 63.158 22.62 19.07 31.51 4.85
3997 8716 0.745128 CAACCCTATAAACGCGGGCA 60.745 55.000 12.47 0.00 41.86 5.36
4075 8794 0.748005 ACATTACATGCCGTGCCTCC 60.748 55.000 0.00 0.00 0.00 4.30
4142 8861 4.869440 CCAGGAGCTCTCGCGCAG 62.869 72.222 14.64 4.17 42.32 5.18
4275 8996 6.253512 TGTTCGAAAGATCATACGATGAACTG 59.746 38.462 0.00 0.00 40.91 3.16
4402 9124 5.328691 TCTTTTTCACGAAACATCACACAC 58.671 37.500 0.00 0.00 0.00 3.82
4403 9125 5.553290 TCTTTTTCACGAAACATCACACA 57.447 34.783 0.00 0.00 0.00 3.72
4424 9146 3.377172 CCACGGATACATTTCCTGGTTTC 59.623 47.826 0.00 0.00 33.18 2.78
4445 9169 3.060895 CGTCAGACTGTATTTTCTTCGCC 59.939 47.826 1.59 0.00 0.00 5.54
4458 9182 2.356382 GGATGGAGAGTACGTCAGACTG 59.644 54.545 0.00 0.00 0.00 3.51
4465 9189 2.897969 ACTGTTTGGATGGAGAGTACGT 59.102 45.455 0.00 0.00 0.00 3.57
4467 9191 6.635030 AAAAACTGTTTGGATGGAGAGTAC 57.365 37.500 6.53 0.00 0.00 2.73
4542 9267 8.733458 CCAATCTACTTCTGTGAAATTTCATGA 58.267 33.333 23.05 19.71 39.73 3.07
4543 9268 8.733458 TCCAATCTACTTCTGTGAAATTTCATG 58.267 33.333 23.05 17.98 39.73 3.07
4546 9271 8.017946 GTGTCCAATCTACTTCTGTGAAATTTC 58.982 37.037 11.41 11.41 0.00 2.17
4547 9272 7.721399 AGTGTCCAATCTACTTCTGTGAAATTT 59.279 33.333 0.00 0.00 0.00 1.82
4557 9288 4.810191 ACCTGAGTGTCCAATCTACTTC 57.190 45.455 0.00 0.00 0.00 3.01
4560 9291 4.894784 TCAAACCTGAGTGTCCAATCTAC 58.105 43.478 0.00 0.00 0.00 2.59
4632 9363 2.357154 GCTCCACACCCCAATATGAACT 60.357 50.000 0.00 0.00 0.00 3.01
4646 9377 2.203337 GCAACTGGGTGCTCCACA 60.203 61.111 7.20 1.73 41.46 4.17
4647 9378 2.985847 GGCAACTGGGTGCTCCAC 60.986 66.667 10.51 0.00 44.31 4.02
4702 9434 5.016831 TCAGAGAAGTGATACACTAGCCAA 58.983 41.667 4.84 0.00 44.62 4.52
4730 9462 6.936968 ACAGTCCTACCAAAAGTCTAGATT 57.063 37.500 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.