Multiple sequence alignment - TraesCS7D01G457200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G457200 chr7D 100.000 7813 0 0 1 7813 575686910 575679098 0.000000e+00 14428
1 TraesCS7D01G457200 chr7D 90.210 143 10 4 7458 7597 575529837 575529696 4.820000e-42 183
2 TraesCS7D01G457200 chr7D 90.210 143 10 4 7458 7597 575530727 575530586 4.820000e-42 183
3 TraesCS7D01G457200 chr7A 90.682 3037 186 45 4749 7738 666185995 666183009 0.000000e+00 3951
4 TraesCS7D01G457200 chr7A 90.107 2062 117 39 1 1987 666190940 666188891 0.000000e+00 2597
5 TraesCS7D01G457200 chr7A 92.231 798 48 9 3462 4257 666187193 666186408 0.000000e+00 1118
6 TraesCS7D01G457200 chr7A 94.454 595 22 8 1994 2586 666188850 666188265 0.000000e+00 905
7 TraesCS7D01G457200 chr7A 95.630 389 17 0 3069 3457 666187627 666187239 6.660000e-175 625
8 TraesCS7D01G457200 chr7A 91.627 418 33 2 4272 4689 666186422 666186007 1.890000e-160 577
9 TraesCS7D01G457200 chr7A 87.627 493 38 17 2596 3069 666188146 666187658 1.150000e-152 551
10 TraesCS7D01G457200 chr7B 93.393 2361 118 23 733 3069 637775091 637772745 0.000000e+00 3461
11 TraesCS7D01G457200 chr7B 87.849 1753 134 38 5736 7445 637769980 637768264 0.000000e+00 1984
12 TraesCS7D01G457200 chr7B 86.345 1494 141 35 4272 5740 637771523 637770068 0.000000e+00 1570
13 TraesCS7D01G457200 chr7B 85.963 805 76 15 3456 4257 637772279 637771509 0.000000e+00 826
14 TraesCS7D01G457200 chr7B 94.859 389 20 0 3069 3457 637772707 637772319 6.700000e-170 608
15 TraesCS7D01G457200 chr7B 81.224 719 77 26 1 682 637777563 637776866 1.930000e-145 527
16 TraesCS7D01G457200 chr7B 90.572 297 24 3 7430 7722 637768246 637767950 2.640000e-104 390
17 TraesCS7D01G457200 chr7B 91.228 228 18 2 7458 7684 637248210 637247984 7.610000e-80 309
18 TraesCS7D01G457200 chr3B 83.197 244 34 5 3103 3340 825764607 825764849 4.750000e-52 217
19 TraesCS7D01G457200 chr2D 84.977 213 21 6 2859 3069 343098156 343097953 1.030000e-48 206
20 TraesCS7D01G457200 chr2D 85.806 155 15 6 7542 7696 102944087 102944234 2.920000e-34 158
21 TraesCS7D01G457200 chr2D 85.256 156 15 6 7542 7697 103130058 103129911 3.780000e-33 154
22 TraesCS7D01G457200 chr2A 84.038 213 23 9 2859 3069 453452170 453451967 2.220000e-45 195
23 TraesCS7D01G457200 chr2A 83.929 168 19 7 7529 7696 102043515 102043674 3.780000e-33 154
24 TraesCS7D01G457200 chr2A 84.024 169 18 8 7529 7696 102325401 102325241 3.780000e-33 154
25 TraesCS7D01G457200 chr1D 87.586 145 8 7 7542 7685 478274027 478273892 8.110000e-35 159
26 TraesCS7D01G457200 chr1A 84.713 157 12 9 7542 7696 574489024 574488878 6.320000e-31 147
27 TraesCS7D01G457200 chr3A 87.000 100 13 0 1075 1174 38316581 38316680 6.410000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G457200 chr7D 575679098 575686910 7812 True 14428.000000 14428 100.000000 1 7813 1 chr7D.!!$R1 7812
1 TraesCS7D01G457200 chr7A 666183009 666190940 7931 True 1474.857143 3951 91.765429 1 7738 7 chr7A.!!$R1 7737
2 TraesCS7D01G457200 chr7B 637767950 637777563 9613 True 1338.000000 3461 88.600714 1 7722 7 chr7B.!!$R2 7721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 2525 1.000717 CCCAACCGTCATGTTTCCAAC 60.001 52.381 0.00 0.00 0.00 3.77 F
1976 3778 0.179150 ATGTTTTTGTGTGTGCGCGT 60.179 45.000 8.43 0.00 0.00 6.01 F
2642 4595 1.986882 AGTTTGGCACCCTTCTCAAG 58.013 50.000 0.00 0.00 0.00 3.02 F
3122 5161 0.383949 CAGAAGAGCGCCTAGAGGAC 59.616 60.000 2.29 0.00 37.39 3.85 F
3398 5437 2.708861 TCAACCCAGTGACACAGGTTAT 59.291 45.455 24.57 8.78 40.62 1.89 F
4340 6420 1.272554 GCTAGGGTGTGCCTAAGGGT 61.273 60.000 0.00 0.00 34.45 4.34 F
5766 7962 1.538047 CTGGGTCCCACATGTCAAAG 58.462 55.000 6.47 0.00 0.00 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2588 4430 0.958091 CACCAAATCAAACAGCCCGA 59.042 50.000 0.00 0.0 0.00 5.14 R
2785 4745 0.687427 GCCCAAATGTAGCCCATGGT 60.687 55.000 11.73 0.0 32.82 3.55 R
3701 5781 0.839946 AGGGCAGCATAAACGAGGAT 59.160 50.000 0.00 0.0 0.00 3.24 R
4187 6267 1.153289 CCTCAGTTGGCATCCCTCG 60.153 63.158 0.00 0.0 0.00 4.63 R
5264 7349 0.179073 AAATCCGCGGTCAGGATCTG 60.179 55.000 27.15 0.0 46.99 2.90 R
5828 8024 0.031178 CTGCAGGGTGCTTGAACAAC 59.969 55.000 5.57 0.0 45.31 3.32 R
7741 10028 0.036010 ACACACAGCTGCATCCCTAC 60.036 55.000 15.27 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.331791 ACAACCAGAATCCTAACTCTATGTTC 58.668 38.462 0.00 0.00 39.89 3.18
107 108 4.457257 AGCTTGAAGAACATTTAGTGCCTC 59.543 41.667 0.00 0.00 0.00 4.70
146 147 6.127423 TGGACTACTCAGAATAAGTTGGCTAC 60.127 42.308 0.00 0.00 29.63 3.58
236 237 3.182976 GTTTCTAGGGAAGAGGAAGGGT 58.817 50.000 0.00 0.00 35.05 4.34
281 282 4.217836 TCTCAAGATCAAGCAGCTTCAT 57.782 40.909 4.07 0.00 0.00 2.57
358 367 1.302431 TCGCACCTTGTGTCCATGG 60.302 57.895 4.97 4.97 40.78 3.66
477 510 6.072029 TGTGTTCGTTTCAAAAACAAATCG 57.928 33.333 3.72 0.00 34.90 3.34
489 522 3.302365 AACAAATCGCCATCAAACTGG 57.698 42.857 0.00 0.00 39.45 4.00
490 523 1.545582 ACAAATCGCCATCAAACTGGG 59.454 47.619 0.00 0.00 36.75 4.45
548 581 6.083098 TCTCGAAGCAAAATTTGGATTGAA 57.917 33.333 0.00 0.00 0.00 2.69
551 584 6.222389 TCGAAGCAAAATTTGGATTGAATGT 58.778 32.000 0.00 0.00 0.00 2.71
552 585 6.705381 TCGAAGCAAAATTTGGATTGAATGTT 59.295 30.769 0.00 0.00 0.00 2.71
603 636 2.869801 CAACAACCGAGCTAACTCAACA 59.130 45.455 0.00 0.00 43.66 3.33
608 641 2.288886 ACCGAGCTAACTCAACACTTCC 60.289 50.000 0.00 0.00 43.66 3.46
616 649 6.152323 AGCTAACTCAACACTTCCTACGATTA 59.848 38.462 0.00 0.00 0.00 1.75
647 689 2.704596 CCCTACTAGCCCTACCCTTTTC 59.295 54.545 0.00 0.00 0.00 2.29
649 691 1.592948 ACTAGCCCTACCCTTTTCCC 58.407 55.000 0.00 0.00 0.00 3.97
663 705 4.346709 CCCTTTTCCCTCCTATTCTCTCTC 59.653 50.000 0.00 0.00 0.00 3.20
683 749 9.661187 CTCTCTCAATATCGATGAAATTTTTGG 57.339 33.333 8.54 0.00 0.00 3.28
724 790 3.057526 GTGTACCCAAAGCATGAAGAACC 60.058 47.826 0.00 0.00 0.00 3.62
758 2525 1.000717 CCCAACCGTCATGTTTCCAAC 60.001 52.381 0.00 0.00 0.00 3.77
797 2566 1.445410 CGATCTTTCACGGACGGCA 60.445 57.895 0.00 0.00 0.00 5.69
821 2590 7.683578 CATAGATCTACTGGATTCCATTCCAA 58.316 38.462 5.70 0.00 45.03 3.53
831 2600 2.442236 TCCATTCCAATTCTCCCAGC 57.558 50.000 0.00 0.00 0.00 4.85
1180 2949 2.146342 TCAAGCTCTGCAAGTAAGCAC 58.854 47.619 11.26 0.00 40.11 4.40
1183 2952 0.322008 GCTCTGCAAGTAAGCACCCT 60.322 55.000 5.46 0.00 40.11 4.34
1213 2982 0.387929 TCGTTCTCTGTGCGGTTTCT 59.612 50.000 0.00 0.00 0.00 2.52
1216 2985 2.031683 CGTTCTCTGTGCGGTTTCTTTT 59.968 45.455 0.00 0.00 0.00 2.27
1384 3153 2.829003 TCCCCGTAGCTCTGCGAG 60.829 66.667 8.89 0.00 41.16 5.03
1423 3197 4.092968 CGTTTCTGGTTGCTTAGTGATACC 59.907 45.833 0.00 0.00 0.00 2.73
1497 3272 8.186821 CCTCTAATTTTACCTCATTTCAAGCAG 58.813 37.037 0.00 0.00 0.00 4.24
1545 3346 6.980593 TGCTTAGTGCTGTTATGTTTGATTT 58.019 32.000 0.00 0.00 43.37 2.17
1661 3463 3.214328 CTTGTTTCCAACCTGCTGTAGT 58.786 45.455 0.00 0.00 0.00 2.73
1662 3464 4.385825 CTTGTTTCCAACCTGCTGTAGTA 58.614 43.478 0.00 0.00 0.00 1.82
1663 3465 4.002906 TGTTTCCAACCTGCTGTAGTAG 57.997 45.455 0.00 0.00 0.00 2.57
1677 3479 7.055667 TGCTGTAGTAGATTTAGGATTCCAG 57.944 40.000 5.29 0.00 0.00 3.86
1749 3551 2.289945 GCAGGAGTTCATGGAGTGAGTT 60.290 50.000 0.00 0.00 38.29 3.01
1876 3678 0.608130 CACAATCTGGAGACCCGACA 59.392 55.000 0.00 0.00 34.29 4.35
1926 3728 5.590663 TGTACAAGTGAGCATTGTTTTACCA 59.409 36.000 0.00 0.00 41.08 3.25
1950 3752 8.386264 CCAAACTCTCAATATATGTATTCCCCT 58.614 37.037 0.00 0.00 0.00 4.79
1954 3756 9.343994 ACTCTCAATATATGTATTCCCCTCAAT 57.656 33.333 0.00 0.00 0.00 2.57
1976 3778 0.179150 ATGTTTTTGTGTGTGCGCGT 60.179 45.000 8.43 0.00 0.00 6.01
2145 3983 2.800881 TCAATGATGAGATCCGTCCG 57.199 50.000 0.00 0.00 0.00 4.79
2235 4073 6.019318 CACAGGTACAATATTACAACGCTACC 60.019 42.308 0.00 0.00 0.00 3.18
2366 4204 2.606308 CGACAAGCACACGGTTAGTAGT 60.606 50.000 0.00 0.00 0.00 2.73
2372 4210 4.335416 AGCACACGGTTAGTAGTACCTTA 58.665 43.478 0.00 0.00 33.35 2.69
2378 4216 6.434028 ACACGGTTAGTAGTACCTTATTCACA 59.566 38.462 0.00 0.00 33.35 3.58
2416 4254 3.879892 GCTGGGTGAGAGGTTGATAATTC 59.120 47.826 0.00 0.00 0.00 2.17
2434 4272 4.543590 ATTCCTTCAGTGAGTTCATCGT 57.456 40.909 0.00 0.00 0.00 3.73
2534 4372 5.642063 TGTTGATGATAAAGGAAGACCGTTC 59.358 40.000 0.00 0.00 41.83 3.95
2553 4391 6.381994 ACCGTTCAAGGACATAAGGTAGAATA 59.618 38.462 0.00 0.00 34.73 1.75
2578 4420 5.260424 TCACACCTGTGGTAAATTGCATAT 58.740 37.500 5.60 0.00 45.65 1.78
2579 4421 6.418946 TCACACCTGTGGTAAATTGCATATA 58.581 36.000 5.60 0.00 45.65 0.86
2580 4422 6.542005 TCACACCTGTGGTAAATTGCATATAG 59.458 38.462 5.60 0.00 45.65 1.31
2581 4423 5.827797 ACACCTGTGGTAAATTGCATATAGG 59.172 40.000 1.91 0.00 32.11 2.57
2582 4424 6.061441 CACCTGTGGTAAATTGCATATAGGA 58.939 40.000 7.16 0.00 32.11 2.94
2583 4425 6.017109 CACCTGTGGTAAATTGCATATAGGAC 60.017 42.308 7.16 0.00 32.11 3.85
2585 4427 6.716628 CCTGTGGTAAATTGCATATAGGACAT 59.283 38.462 0.00 0.00 0.00 3.06
2586 4428 7.231317 CCTGTGGTAAATTGCATATAGGACATT 59.769 37.037 0.00 0.00 0.00 2.71
2587 4429 9.283768 CTGTGGTAAATTGCATATAGGACATTA 57.716 33.333 0.00 0.00 0.00 1.90
2588 4430 9.806448 TGTGGTAAATTGCATATAGGACATTAT 57.194 29.630 0.00 0.00 0.00 1.28
2617 4570 2.673775 TGATTTGGTGCCCTTGAGAA 57.326 45.000 0.00 0.00 0.00 2.87
2618 4571 3.173953 TGATTTGGTGCCCTTGAGAAT 57.826 42.857 0.00 0.00 0.00 2.40
2642 4595 1.986882 AGTTTGGCACCCTTCTCAAG 58.013 50.000 0.00 0.00 0.00 3.02
2736 4694 3.181456 CCCAGTTCATTTTTGGAGCCAAA 60.181 43.478 10.49 10.49 43.23 3.28
2785 4745 3.255642 GTCTGCAGAATTTGGCTTGGTTA 59.744 43.478 20.19 0.00 0.00 2.85
2806 4766 1.193323 CATGGGCTACATTTGGGCAA 58.807 50.000 0.00 0.00 37.84 4.52
2818 4778 0.539051 TTGGGCAAACACCAAACAGG 59.461 50.000 0.00 0.00 44.52 4.00
3005 4966 2.818432 ACGTGATGAGGTAAGTCGAGTT 59.182 45.455 10.90 10.90 0.00 3.01
3006 4967 4.005650 ACGTGATGAGGTAAGTCGAGTTA 58.994 43.478 8.66 8.66 0.00 2.24
3009 4970 6.034591 CGTGATGAGGTAAGTCGAGTTATTT 58.965 40.000 15.48 7.35 0.00 1.40
3060 5030 1.073964 CGAATGCACCTGTCTCAGTG 58.926 55.000 0.00 0.00 0.00 3.66
3122 5161 0.383949 CAGAAGAGCGCCTAGAGGAC 59.616 60.000 2.29 0.00 37.39 3.85
3375 5414 9.079833 CCAGATAATGTCTTATTTGTTTGCAAG 57.920 33.333 0.00 0.00 34.00 4.01
3398 5437 2.708861 TCAACCCAGTGACACAGGTTAT 59.291 45.455 24.57 8.78 40.62 1.89
3442 5481 7.709947 TGCATAATTTTCTGCTCCTTTAGATG 58.290 34.615 8.28 0.00 39.16 2.90
3445 5484 9.727627 CATAATTTTCTGCTCCTTTAGATGTTC 57.272 33.333 0.00 0.00 0.00 3.18
3496 5576 9.778741 TTACATGTAGATTTTCTTCTGACACTT 57.221 29.630 5.56 0.00 0.00 3.16
3497 5577 8.316640 ACATGTAGATTTTCTTCTGACACTTC 57.683 34.615 0.00 0.00 0.00 3.01
3499 5579 7.953158 TGTAGATTTTCTTCTGACACTTCTG 57.047 36.000 0.00 0.00 0.00 3.02
3500 5580 6.931281 TGTAGATTTTCTTCTGACACTTCTGG 59.069 38.462 0.00 0.00 0.00 3.86
3501 5581 5.934781 AGATTTTCTTCTGACACTTCTGGT 58.065 37.500 0.00 0.00 0.00 4.00
3502 5582 6.360618 AGATTTTCTTCTGACACTTCTGGTT 58.639 36.000 0.00 0.00 0.00 3.67
3503 5583 7.509546 AGATTTTCTTCTGACACTTCTGGTTA 58.490 34.615 0.00 0.00 0.00 2.85
3504 5584 7.993183 AGATTTTCTTCTGACACTTCTGGTTAA 59.007 33.333 0.00 0.00 0.00 2.01
3505 5585 7.553881 TTTTCTTCTGACACTTCTGGTTAAG 57.446 36.000 0.00 0.00 0.00 1.85
3506 5586 5.871396 TCTTCTGACACTTCTGGTTAAGT 57.129 39.130 0.00 0.00 40.33 2.24
3507 5587 6.235231 TCTTCTGACACTTCTGGTTAAGTT 57.765 37.500 0.00 0.00 37.61 2.66
3508 5588 6.049149 TCTTCTGACACTTCTGGTTAAGTTG 58.951 40.000 0.00 0.00 37.61 3.16
3509 5589 4.127171 TCTGACACTTCTGGTTAAGTTGC 58.873 43.478 0.00 0.00 37.61 4.17
3510 5590 4.130118 CTGACACTTCTGGTTAAGTTGCT 58.870 43.478 0.00 0.00 37.61 3.91
3513 5593 6.116806 TGACACTTCTGGTTAAGTTGCTAAA 58.883 36.000 0.00 0.00 37.61 1.85
3537 5617 8.514330 AATGCTAATTATTTGGACGTCCTAAA 57.486 30.769 33.39 28.24 34.62 1.85
3538 5618 7.925043 TGCTAATTATTTGGACGTCCTAAAA 57.075 32.000 33.39 25.71 34.62 1.52
3547 5627 5.534207 TGGACGTCCTAAAACTGAACTTA 57.466 39.130 33.39 6.77 36.82 2.24
3604 5684 7.344095 TCTGGATAAGTAAGTTGGCTACTAC 57.656 40.000 1.15 1.92 35.54 2.73
3701 5781 9.665719 TTCTTAATCTCAACTAACACATGCATA 57.334 29.630 0.00 0.00 0.00 3.14
3717 5797 2.807967 TGCATATCCTCGTTTATGCTGC 59.192 45.455 14.02 0.00 46.92 5.25
3734 5814 3.009033 TGCTGCCCTTAACTTCACATACT 59.991 43.478 0.00 0.00 0.00 2.12
3807 5887 3.952967 TGCTATGCTTTCATTGGTATGCA 59.047 39.130 0.00 0.00 34.22 3.96
3926 6006 3.332761 TTGTCAATCGAACAGTTGCAC 57.667 42.857 0.00 0.00 0.00 4.57
3928 6008 2.877786 TGTCAATCGAACAGTTGCACAT 59.122 40.909 0.00 0.00 0.00 3.21
3958 6038 4.020573 CCATTTAGGCCTACGATATGGTCA 60.021 45.833 22.69 2.76 0.00 4.02
4046 6126 7.517614 TGCTAACAAACTGGTAAATGAATGA 57.482 32.000 0.00 0.00 0.00 2.57
4048 6128 6.528072 GCTAACAAACTGGTAAATGAATGAGC 59.472 38.462 0.00 0.00 0.00 4.26
4056 6136 4.811024 TGGTAAATGAATGAGCTGTCGATC 59.189 41.667 0.00 0.00 0.00 3.69
4187 6267 2.426522 TGTCTTGTGGATTAGCAGCAC 58.573 47.619 0.00 0.00 0.00 4.40
4201 6281 2.045926 GCACGAGGGATGCCAACT 60.046 61.111 5.86 0.00 37.08 3.16
4233 6313 2.820787 ACTAGTCTTCGAGGGAACACTG 59.179 50.000 0.00 0.00 33.20 3.66
4242 6322 3.512329 TCGAGGGAACACTGCTGTATTAA 59.488 43.478 0.00 0.00 0.00 1.40
4243 6323 3.865745 CGAGGGAACACTGCTGTATTAAG 59.134 47.826 0.00 0.00 0.00 1.85
4244 6324 4.192317 GAGGGAACACTGCTGTATTAAGG 58.808 47.826 0.00 0.00 0.00 2.69
4245 6325 3.844211 AGGGAACACTGCTGTATTAAGGA 59.156 43.478 0.00 0.00 0.00 3.36
4246 6326 4.475016 AGGGAACACTGCTGTATTAAGGAT 59.525 41.667 0.00 0.00 0.00 3.24
4247 6327 4.576463 GGGAACACTGCTGTATTAAGGATG 59.424 45.833 0.00 0.00 0.00 3.51
4248 6328 5.186198 GGAACACTGCTGTATTAAGGATGT 58.814 41.667 0.00 0.00 0.00 3.06
4249 6329 5.065218 GGAACACTGCTGTATTAAGGATGTG 59.935 44.000 0.00 0.00 0.00 3.21
4250 6330 5.165961 ACACTGCTGTATTAAGGATGTGT 57.834 39.130 0.00 0.00 30.77 3.72
4251 6331 6.294361 ACACTGCTGTATTAAGGATGTGTA 57.706 37.500 0.00 0.00 32.46 2.90
4252 6332 6.341316 ACACTGCTGTATTAAGGATGTGTAG 58.659 40.000 0.00 0.00 32.46 2.74
4253 6333 5.755375 CACTGCTGTATTAAGGATGTGTAGG 59.245 44.000 0.00 0.00 0.00 3.18
4254 6334 5.661312 ACTGCTGTATTAAGGATGTGTAGGA 59.339 40.000 0.00 0.00 0.00 2.94
4255 6335 6.327626 ACTGCTGTATTAAGGATGTGTAGGAT 59.672 38.462 0.00 0.00 0.00 3.24
4256 6336 7.136822 TGCTGTATTAAGGATGTGTAGGATT 57.863 36.000 0.00 0.00 0.00 3.01
4257 6337 7.573710 TGCTGTATTAAGGATGTGTAGGATTT 58.426 34.615 0.00 0.00 0.00 2.17
4258 6338 8.052748 TGCTGTATTAAGGATGTGTAGGATTTT 58.947 33.333 0.00 0.00 0.00 1.82
4259 6339 8.903820 GCTGTATTAAGGATGTGTAGGATTTTT 58.096 33.333 0.00 0.00 0.00 1.94
4340 6420 1.272554 GCTAGGGTGTGCCTAAGGGT 61.273 60.000 0.00 0.00 34.45 4.34
4424 6504 5.791336 ATTTTCTCCCACTTGAACCTTTC 57.209 39.130 0.00 0.00 0.00 2.62
4510 6590 8.040132 TGTGAATCAAGGTTCAGAACAAAATTT 58.960 29.630 15.36 3.12 38.68 1.82
4543 6623 2.022195 CTGTGCTATTGCTTGATGCCT 58.978 47.619 0.00 0.00 42.00 4.75
4624 6704 2.225019 CCTGTGCAACTTCAGTGTGATC 59.775 50.000 0.00 0.00 38.04 2.92
4670 6751 5.587844 TGAAAATCTTAGATGCAGAGAAGGC 59.412 40.000 0.00 0.00 0.00 4.35
4701 6782 3.810743 GCACAATTGTTGTCCTAGGGTCT 60.811 47.826 8.77 0.00 43.23 3.85
4703 6784 5.556915 CACAATTGTTGTCCTAGGGTCTAA 58.443 41.667 8.77 0.00 43.23 2.10
4712 6793 6.303903 TGTCCTAGGGTCTAATTTTGGTAC 57.696 41.667 9.46 0.00 0.00 3.34
4736 6817 6.946009 ACAGTATAAAGGCTACAATTGTGGTT 59.054 34.615 21.42 10.85 0.00 3.67
4764 6845 9.953697 ACTAATATATCTTTGACGACACTTCTC 57.046 33.333 0.00 0.00 0.00 2.87
4799 6880 9.271828 TGTATTAATCATCGTAGATGCACATTT 57.728 29.630 5.23 0.00 45.12 2.32
4833 6914 7.934855 ATGCTAACTGTTTCTCTTGATGATT 57.065 32.000 0.00 0.00 0.00 2.57
4943 7024 8.712228 TCTCACAGCTCCTTCTATCATAATTA 57.288 34.615 0.00 0.00 0.00 1.40
4970 7051 9.906660 TCCACTAATTTGCATTTTGTTACTTAG 57.093 29.630 0.00 0.00 0.00 2.18
4980 7064 6.143919 GCATTTTGTTACTTAGAGTTTGTGCC 59.856 38.462 0.00 0.00 0.00 5.01
4981 7065 7.425606 CATTTTGTTACTTAGAGTTTGTGCCT 58.574 34.615 0.00 0.00 0.00 4.75
4982 7066 6.613755 TTTGTTACTTAGAGTTTGTGCCTC 57.386 37.500 0.00 0.00 0.00 4.70
4983 7067 5.546621 TGTTACTTAGAGTTTGTGCCTCT 57.453 39.130 0.00 0.00 41.94 3.69
4990 7074 2.143925 GAGTTTGTGCCTCTGTGTACC 58.856 52.381 0.00 0.00 0.00 3.34
4999 7083 2.675317 GCCTCTGTGTACCATGTCAGTC 60.675 54.545 0.00 0.00 0.00 3.51
5007 7091 2.732412 ACCATGTCAGTCACTCTTCG 57.268 50.000 0.00 0.00 0.00 3.79
5013 7097 5.402398 CATGTCAGTCACTCTTCGTTGATA 58.598 41.667 0.00 0.00 0.00 2.15
5081 7165 8.726870 TTAGAATGTTTACTTATGCCCTACAC 57.273 34.615 0.00 0.00 0.00 2.90
5139 7224 9.048446 CACTATCTAGAGAACACTACTTACTCC 57.952 40.741 0.00 0.00 0.00 3.85
5166 7251 5.048224 GCTATGCTTGCAGATGGATAATTGT 60.048 40.000 0.87 0.00 0.00 2.71
5319 7412 6.205658 TGATTGTTGTCGTGAAATGTGGATTA 59.794 34.615 0.00 0.00 0.00 1.75
5329 7422 9.173021 TCGTGAAATGTGGATTATCTTTTATGT 57.827 29.630 0.00 0.00 0.00 2.29
5366 7459 2.848242 TGGTTAGCTGGGTATGGGTAA 58.152 47.619 0.00 0.00 0.00 2.85
5367 7460 2.506644 TGGTTAGCTGGGTATGGGTAAC 59.493 50.000 0.00 0.00 42.24 2.50
5371 7464 5.512576 GGTTAGCTGGGTATGGGTAACATAG 60.513 48.000 14.07 0.00 42.50 2.23
5384 7482 5.163205 TGGGTAACATAGCAGCATTAGATGT 60.163 40.000 0.00 0.00 39.74 3.06
5389 7487 4.509230 ACATAGCAGCATTAGATGTGAACG 59.491 41.667 0.00 0.00 32.61 3.95
5408 7506 5.046878 TGAACGGATTATGTGTCCTACAACT 60.047 40.000 0.00 0.00 43.77 3.16
5411 7509 5.046878 ACGGATTATGTGTCCTACAACTTCA 60.047 40.000 0.00 0.00 43.77 3.02
5415 7513 7.606456 GGATTATGTGTCCTACAACTTCAGAAA 59.394 37.037 0.00 0.00 43.77 2.52
5474 7572 5.168569 TGAACTCTACTGCGAACCTAATTG 58.831 41.667 0.00 0.00 0.00 2.32
5475 7573 4.124851 ACTCTACTGCGAACCTAATTGG 57.875 45.455 0.00 0.00 42.93 3.16
5476 7574 2.866762 CTCTACTGCGAACCTAATTGGC 59.133 50.000 0.00 0.00 42.08 4.52
5477 7575 2.500098 TCTACTGCGAACCTAATTGGCT 59.500 45.455 0.00 0.00 42.22 4.75
5478 7576 3.702548 TCTACTGCGAACCTAATTGGCTA 59.297 43.478 0.00 0.00 42.22 3.93
5479 7577 3.343941 ACTGCGAACCTAATTGGCTAA 57.656 42.857 0.00 0.00 42.22 3.09
5480 7578 3.886123 ACTGCGAACCTAATTGGCTAAT 58.114 40.909 0.00 0.00 42.22 1.73
5481 7579 4.270008 ACTGCGAACCTAATTGGCTAATT 58.730 39.130 12.96 12.96 42.22 1.40
5484 7582 5.676552 TGCGAACCTAATTGGCTAATTCTA 58.323 37.500 11.71 0.00 42.22 2.10
5487 7585 7.078228 GCGAACCTAATTGGCTAATTCTAATG 58.922 38.462 11.71 1.00 38.87 1.90
5538 7639 5.153950 AGTCAAGGATGTAACAGTTCCTC 57.846 43.478 0.00 0.00 38.96 3.71
5729 7830 9.717942 GACAATTGGAGATATAATCAAGTAGCT 57.282 33.333 10.83 0.00 0.00 3.32
5766 7962 1.538047 CTGGGTCCCACATGTCAAAG 58.462 55.000 6.47 0.00 0.00 2.77
5779 7975 6.455360 ACATGTCAAAGTCAGAAATGTGTT 57.545 33.333 0.00 0.00 41.26 3.32
5780 7976 6.866480 ACATGTCAAAGTCAGAAATGTGTTT 58.134 32.000 0.00 0.00 41.26 2.83
5803 7999 3.425162 AGTTCTCCTTGGGCTTTACAG 57.575 47.619 0.00 0.00 0.00 2.74
5805 8001 6.520805 AAGTTCTCCTTGGGCTTTACAGCA 62.521 45.833 2.81 0.00 38.89 4.41
5827 8023 8.618677 CAGCATGTGTCTACAATTCTGATATTT 58.381 33.333 0.00 0.00 40.84 1.40
5828 8024 8.618677 AGCATGTGTCTACAATTCTGATATTTG 58.381 33.333 0.00 0.00 40.84 2.32
5845 8062 0.459489 TTGTTGTTCAAGCACCCTGC 59.541 50.000 0.00 0.00 45.46 4.85
5854 8071 4.809070 GCACCCTGCAGAAACTCT 57.191 55.556 17.39 0.00 44.26 3.24
5855 8072 2.549332 GCACCCTGCAGAAACTCTC 58.451 57.895 17.39 0.00 44.26 3.20
5856 8073 1.294659 GCACCCTGCAGAAACTCTCG 61.295 60.000 17.39 0.00 44.26 4.04
6006 8223 8.853077 ATGTTCTGAAAGATGATAACACTCAA 57.147 30.769 0.00 0.00 46.36 3.02
6036 8253 3.582780 GAATAACCGTCGAAGGTCACTT 58.417 45.455 23.55 15.93 45.21 3.16
6048 8265 4.882842 AAGGTCACTTCTCCTTCTCTTC 57.117 45.455 0.00 0.00 39.52 2.87
6060 8277 9.184523 CTTCTCCTTCTCTTCTCTTAGACAATA 57.815 37.037 0.00 0.00 0.00 1.90
6061 8278 9.707957 TTCTCCTTCTCTTCTCTTAGACAATAT 57.292 33.333 0.00 0.00 0.00 1.28
6145 8370 0.312416 AGGATGATACTGCTCGTCGC 59.688 55.000 0.00 0.00 39.77 5.19
6193 8418 3.291584 AGTAGATGACCAGAGATCGCAA 58.708 45.455 0.00 0.00 0.00 4.85
6283 8508 1.220529 GGCAAAGCAAAGAAAGTGCC 58.779 50.000 0.00 0.00 43.27 5.01
6316 8541 3.691342 CGGAGGCCAGACGACCAA 61.691 66.667 5.01 0.00 0.00 3.67
6321 8546 1.525077 GGCCAGACGACCAACACAA 60.525 57.895 0.00 0.00 0.00 3.33
6328 8553 2.066262 GACGACCAACACAATCACGAT 58.934 47.619 0.00 0.00 0.00 3.73
6335 8560 6.465439 ACCAACACAATCACGATAGATCTA 57.535 37.500 4.57 4.57 41.38 1.98
6344 8569 4.700700 TCACGATAGATCTAGTGGTCGAA 58.299 43.478 23.49 12.21 41.38 3.71
6349 8574 2.303175 AGATCTAGTGGTCGAAGCTCC 58.697 52.381 0.00 0.00 0.00 4.70
6361 8586 2.017559 GAAGCTCCGGTAGGCACGAT 62.018 60.000 16.12 3.17 37.47 3.73
6421 8646 0.596577 TGGACGACGGTGAAGAAGAG 59.403 55.000 0.00 0.00 0.00 2.85
6577 8802 3.369261 GCCCTGATGCTGATAGACATAGG 60.369 52.174 0.00 0.00 0.00 2.57
6586 8811 4.462483 GCTGATAGACATAGGAGGGAAGAG 59.538 50.000 0.00 0.00 0.00 2.85
6684 8909 2.629656 CCAGTTTTGCCCTCGCCAG 61.630 63.158 0.00 0.00 0.00 4.85
6714 8939 4.560035 GCTTACGCTGAGTTTACGATGTAA 59.440 41.667 0.00 0.00 0.00 2.41
6768 8999 6.391227 AGAACGGAAAGTTTTCATCACATT 57.609 33.333 6.90 0.00 44.35 2.71
6772 9003 5.685511 ACGGAAAGTTTTCATCACATTTTCG 59.314 36.000 6.90 0.00 38.92 3.46
6826 9063 2.570442 ACGTTTTGTTGTGCGGAATT 57.430 40.000 0.00 0.00 0.00 2.17
6831 9068 3.791973 TTTGTTGTGCGGAATTGAACT 57.208 38.095 0.00 0.00 0.00 3.01
6886 9123 1.006832 CCCGTGTGCTGTACTAATGC 58.993 55.000 0.00 0.00 0.00 3.56
6889 9126 1.927174 CGTGTGCTGTACTAATGCTCC 59.073 52.381 0.00 0.00 0.00 4.70
6891 9128 1.134818 TGTGCTGTACTAATGCTCCCG 60.135 52.381 0.00 0.00 0.00 5.14
6920 9157 3.607078 GCGAACATTTCTGCTCGTTTCTT 60.607 43.478 0.00 0.00 41.78 2.52
6951 9188 8.801715 TTTTGCAAGTGAAATGAGAATCTTAC 57.198 30.769 0.00 0.00 34.92 2.34
6973 9210 5.953571 ACCTTACCTTTTTCTTCCAGTGAT 58.046 37.500 0.00 0.00 0.00 3.06
7129 9370 5.051240 CGTCAAATAGCCTAACACCGTTATC 60.051 44.000 0.00 0.00 0.00 1.75
7233 9474 2.133281 TGAGGGGATCTTGCATGTTG 57.867 50.000 0.00 0.00 0.00 3.33
7250 9491 2.030363 TGTTGGATCATTTTGCGTGGTC 60.030 45.455 0.00 0.00 0.00 4.02
7336 9586 1.359848 TTTTCTTCGAGCGATCTGGC 58.640 50.000 0.00 0.00 0.00 4.85
7398 9648 0.099436 CAACTGGCTTTAGCGATGCC 59.901 55.000 11.47 11.47 46.18 4.40
7414 9664 2.124403 CCTGAGGCCCATGTGAGC 60.124 66.667 0.00 0.00 0.00 4.26
7415 9665 2.513204 CTGAGGCCCATGTGAGCG 60.513 66.667 0.00 0.00 0.00 5.03
7421 9671 2.109126 GCCCATGTGAGCGAACCTC 61.109 63.158 0.00 0.00 41.15 3.85
7474 9757 2.673258 TGGAATAGTCCCACATCGCTA 58.327 47.619 6.78 0.00 44.23 4.26
7525 9808 0.392998 CATATAGGCCGGCACCATCC 60.393 60.000 30.85 9.73 0.00 3.51
7531 9814 2.897207 CCGGCACCATCCTCGTTA 59.103 61.111 0.00 0.00 0.00 3.18
7637 9920 8.739039 ACATGTGCAGCATACTCTAATTTTTAA 58.261 29.630 0.00 0.00 35.74 1.52
7718 10005 6.737254 TGCTGTTAAATTGTTCTAGCTACC 57.263 37.500 0.00 0.00 0.00 3.18
7722 10009 6.465948 TGTTAAATTGTTCTAGCTACCGGAA 58.534 36.000 9.46 0.00 0.00 4.30
7723 10010 6.369615 TGTTAAATTGTTCTAGCTACCGGAAC 59.630 38.462 9.46 14.40 39.54 3.62
7727 10014 4.184079 TGTTCTAGCTACCGGAACTTTC 57.816 45.455 9.46 1.23 39.73 2.62
7730 10017 2.494870 TCTAGCTACCGGAACTTTCACC 59.505 50.000 9.46 0.00 0.00 4.02
7731 10018 1.349067 AGCTACCGGAACTTTCACCT 58.651 50.000 9.46 0.00 0.00 4.00
7732 10019 1.002087 AGCTACCGGAACTTTCACCTG 59.998 52.381 9.46 0.00 0.00 4.00
7733 10020 1.439679 CTACCGGAACTTTCACCTGC 58.560 55.000 9.46 0.00 0.00 4.85
7734 10021 1.002087 CTACCGGAACTTTCACCTGCT 59.998 52.381 9.46 0.00 0.00 4.24
7735 10022 0.535102 ACCGGAACTTTCACCTGCTG 60.535 55.000 9.46 0.00 0.00 4.41
7737 10024 1.308998 CGGAACTTTCACCTGCTGTT 58.691 50.000 0.00 0.00 0.00 3.16
7738 10025 1.676006 CGGAACTTTCACCTGCTGTTT 59.324 47.619 0.00 0.00 0.00 2.83
7739 10026 2.541588 CGGAACTTTCACCTGCTGTTTG 60.542 50.000 0.00 0.00 0.00 2.93
7740 10027 2.687935 GGAACTTTCACCTGCTGTTTGA 59.312 45.455 0.00 0.00 0.00 2.69
7741 10028 3.243201 GGAACTTTCACCTGCTGTTTGAG 60.243 47.826 0.00 0.00 0.00 3.02
7742 10029 3.004752 ACTTTCACCTGCTGTTTGAGT 57.995 42.857 0.00 0.00 0.00 3.41
7743 10030 4.150897 ACTTTCACCTGCTGTTTGAGTA 57.849 40.909 0.00 0.00 0.00 2.59
7744 10031 4.130118 ACTTTCACCTGCTGTTTGAGTAG 58.870 43.478 0.00 0.00 34.28 2.57
7750 10037 2.012673 CTGCTGTTTGAGTAGGGATGC 58.987 52.381 0.00 0.00 30.96 3.91
7751 10038 1.350684 TGCTGTTTGAGTAGGGATGCA 59.649 47.619 0.00 0.00 0.00 3.96
7752 10039 2.012673 GCTGTTTGAGTAGGGATGCAG 58.987 52.381 0.00 0.00 0.00 4.41
7753 10040 2.012673 CTGTTTGAGTAGGGATGCAGC 58.987 52.381 0.00 0.00 0.00 5.25
7754 10041 1.630369 TGTTTGAGTAGGGATGCAGCT 59.370 47.619 0.22 0.00 0.00 4.24
7755 10042 2.012673 GTTTGAGTAGGGATGCAGCTG 58.987 52.381 10.11 10.11 0.00 4.24
7756 10043 1.279496 TTGAGTAGGGATGCAGCTGT 58.721 50.000 16.64 0.00 0.00 4.40
7757 10044 0.538584 TGAGTAGGGATGCAGCTGTG 59.461 55.000 16.64 0.00 0.00 3.66
7758 10045 0.539051 GAGTAGGGATGCAGCTGTGT 59.461 55.000 16.64 3.91 0.00 3.72
7759 10046 0.251354 AGTAGGGATGCAGCTGTGTG 59.749 55.000 16.64 0.00 0.00 3.82
7760 10047 0.036010 GTAGGGATGCAGCTGTGTGT 60.036 55.000 16.64 0.00 0.00 3.72
7761 10048 1.207089 GTAGGGATGCAGCTGTGTGTA 59.793 52.381 16.64 0.00 0.00 2.90
7762 10049 0.036010 AGGGATGCAGCTGTGTGTAC 60.036 55.000 16.64 2.03 0.00 2.90
7763 10050 0.321564 GGGATGCAGCTGTGTGTACA 60.322 55.000 16.64 3.54 35.08 2.90
7773 10060 2.831685 TGTGTGTACAGGTGCTAAGG 57.168 50.000 0.00 0.00 31.91 2.69
7774 10061 1.346395 TGTGTGTACAGGTGCTAAGGG 59.654 52.381 0.00 0.00 31.91 3.95
7775 10062 1.346722 GTGTGTACAGGTGCTAAGGGT 59.653 52.381 0.00 0.00 0.00 4.34
7776 10063 1.346395 TGTGTACAGGTGCTAAGGGTG 59.654 52.381 0.00 0.00 0.00 4.61
7777 10064 1.346722 GTGTACAGGTGCTAAGGGTGT 59.653 52.381 0.00 0.00 0.00 4.16
7778 10065 1.621814 TGTACAGGTGCTAAGGGTGTC 59.378 52.381 0.00 0.00 0.00 3.67
7779 10066 1.621814 GTACAGGTGCTAAGGGTGTCA 59.378 52.381 0.00 0.00 0.00 3.58
7780 10067 0.396811 ACAGGTGCTAAGGGTGTCAC 59.603 55.000 0.00 0.00 0.00 3.67
7781 10068 0.396435 CAGGTGCTAAGGGTGTCACA 59.604 55.000 5.12 0.00 0.00 3.58
7782 10069 1.003580 CAGGTGCTAAGGGTGTCACAT 59.996 52.381 5.12 0.00 0.00 3.21
7783 10070 2.236146 CAGGTGCTAAGGGTGTCACATA 59.764 50.000 5.12 0.00 0.00 2.29
7784 10071 2.910319 AGGTGCTAAGGGTGTCACATAA 59.090 45.455 5.12 0.00 0.00 1.90
7785 10072 3.055094 AGGTGCTAAGGGTGTCACATAAG 60.055 47.826 5.12 0.00 0.00 1.73
7786 10073 3.270877 GTGCTAAGGGTGTCACATAAGG 58.729 50.000 5.12 0.00 0.00 2.69
7787 10074 3.055385 GTGCTAAGGGTGTCACATAAGGA 60.055 47.826 5.12 0.00 0.00 3.36
7788 10075 3.585289 TGCTAAGGGTGTCACATAAGGAA 59.415 43.478 5.12 0.00 0.00 3.36
7789 10076 4.042311 TGCTAAGGGTGTCACATAAGGAAA 59.958 41.667 5.12 0.00 0.00 3.13
7790 10077 5.007682 GCTAAGGGTGTCACATAAGGAAAA 58.992 41.667 5.12 0.00 0.00 2.29
7791 10078 5.475564 GCTAAGGGTGTCACATAAGGAAAAA 59.524 40.000 5.12 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.548721 GTGGATTTTAACAGTGTAAGGATATCG 58.451 37.037 0.00 0.00 0.00 2.92
199 200 2.997986 AGAAACCGCAACCGTGTATAAG 59.002 45.455 0.00 0.00 0.00 1.73
208 209 1.002773 TCTTCCCTAGAAACCGCAACC 59.997 52.381 0.00 0.00 0.00 3.77
236 237 1.447140 GTTCGCCACCGCATCACTA 60.447 57.895 0.00 0.00 34.03 2.74
319 328 4.606961 GACTCATAGAAGAGCACTAGCAC 58.393 47.826 0.00 0.00 45.49 4.40
358 367 8.880878 TGGAAAGTAAAGCAAAGATAAAAACC 57.119 30.769 0.00 0.00 0.00 3.27
465 498 5.433855 CAGTTTGATGGCGATTTGTTTTTG 58.566 37.500 0.00 0.00 0.00 2.44
477 510 4.809673 CTTTAGTTTCCCAGTTTGATGGC 58.190 43.478 0.00 0.00 39.17 4.40
552 585 9.820229 GCGTCCATATTCGATTCAAATTATTTA 57.180 29.630 0.00 0.00 0.00 1.40
627 669 2.704596 GGAAAAGGGTAGGGCTAGTAGG 59.295 54.545 0.00 0.00 0.00 3.18
647 689 6.184068 TCGATATTGAGAGAGAATAGGAGGG 58.816 44.000 0.00 0.00 0.00 4.30
649 691 8.504812 TCATCGATATTGAGAGAGAATAGGAG 57.495 38.462 0.00 0.00 0.00 3.69
663 705 8.471457 CGCTTACCAAAAATTTCATCGATATTG 58.529 33.333 0.00 0.00 0.00 1.90
724 790 2.363683 GGTTGGGAATTCAGAGAGCAG 58.636 52.381 7.93 0.00 0.00 4.24
769 2538 1.254975 TGAAAGATCGGACGGCTGGA 61.255 55.000 0.00 0.00 0.00 3.86
821 2590 1.183549 AAGTACGTCGCTGGGAGAAT 58.816 50.000 0.00 0.00 0.00 2.40
831 2600 3.059393 GGGTTTTCTGGAAAAGTACGTCG 60.059 47.826 8.52 0.00 40.53 5.12
908 2677 3.756963 GTGACAATCCCAACCCTAACTTC 59.243 47.826 0.00 0.00 0.00 3.01
1071 2840 1.482593 ACCATCAGGACCGACATCTTC 59.517 52.381 0.00 0.00 38.69 2.87
1180 2949 3.886505 AGAGAACGAGCTCTATGTAAGGG 59.113 47.826 12.85 0.00 43.19 3.95
1183 2952 4.438880 GCACAGAGAACGAGCTCTATGTAA 60.439 45.833 12.85 0.00 44.11 2.41
1191 2960 2.088674 AACCGCACAGAGAACGAGCT 62.089 55.000 0.00 0.00 0.00 4.09
1213 2982 0.878416 GTGGCGCATACAGACCAAAA 59.122 50.000 10.83 0.00 33.03 2.44
1216 2985 1.375396 GTGTGGCGCATACAGACCA 60.375 57.895 15.76 0.00 0.00 4.02
1302 3071 0.317519 GGCACCGCACAACACTAAAC 60.318 55.000 0.00 0.00 0.00 2.01
1423 3197 7.115520 CAGCTGACCTTATATAAGATGTTCACG 59.884 40.741 21.75 6.78 35.33 4.35
1468 3243 5.588648 TGAAATGAGGTAAAATTAGAGGCCG 59.411 40.000 0.00 0.00 0.00 6.13
1472 3247 8.186821 CCTGCTTGAAATGAGGTAAAATTAGAG 58.813 37.037 0.00 0.00 0.00 2.43
1661 3463 9.434275 TCACTGTAATCTGGAATCCTAAATCTA 57.566 33.333 0.00 0.00 0.00 1.98
1662 3464 8.324191 TCACTGTAATCTGGAATCCTAAATCT 57.676 34.615 0.00 0.00 0.00 2.40
1663 3465 9.566432 AATCACTGTAATCTGGAATCCTAAATC 57.434 33.333 0.00 0.00 0.00 2.17
1677 3479 8.920665 GCAGACACATCTATAATCACTGTAATC 58.079 37.037 0.00 0.00 32.25 1.75
1876 3678 2.078665 ACCACCACTGCCAGTTCCT 61.079 57.895 0.00 0.00 0.00 3.36
1926 3728 9.170890 TGAGGGGAATACATATATTGAGAGTTT 57.829 33.333 0.00 0.00 30.77 2.66
1939 3741 9.889128 CAAAAACATAAATTGAGGGGAATACAT 57.111 29.630 0.00 0.00 0.00 2.29
1942 3744 8.875168 ACACAAAAACATAAATTGAGGGGAATA 58.125 29.630 0.00 0.00 0.00 1.75
1943 3745 7.661027 CACACAAAAACATAAATTGAGGGGAAT 59.339 33.333 0.00 0.00 0.00 3.01
1950 3752 5.276584 GCGCACACACAAAAACATAAATTGA 60.277 36.000 0.30 0.00 0.00 2.57
1954 3756 2.531912 CGCGCACACACAAAAACATAAA 59.468 40.909 8.75 0.00 0.00 1.40
1976 3778 2.035449 AGAGCTTAGTAACACACACGCA 59.965 45.455 0.00 0.00 0.00 5.24
2145 3983 5.230182 CCAGTTTTTGAGTGCCTTAATTCC 58.770 41.667 0.00 0.00 0.00 3.01
2235 4073 8.388103 ACGTATGTCCTCAAAAATTAAAGATCG 58.612 33.333 0.00 0.00 0.00 3.69
2397 4235 4.779993 AGGAATTATCAACCTCTCACCC 57.220 45.455 0.00 0.00 0.00 4.61
2416 4254 4.273480 ACAAAACGATGAACTCACTGAAGG 59.727 41.667 0.00 0.00 0.00 3.46
2434 4272 4.402155 AGACCTGCAATTGACAGAACAAAA 59.598 37.500 23.16 0.00 37.32 2.44
2534 4372 9.046296 GTGTGAATATTCTACCTTATGTCCTTG 57.954 37.037 16.24 0.00 0.00 3.61
2578 4420 3.452990 TCAAACAGCCCGATAATGTCCTA 59.547 43.478 0.00 0.00 0.00 2.94
2579 4421 2.238646 TCAAACAGCCCGATAATGTCCT 59.761 45.455 0.00 0.00 0.00 3.85
2580 4422 2.639065 TCAAACAGCCCGATAATGTCC 58.361 47.619 0.00 0.00 0.00 4.02
2581 4423 4.900635 AATCAAACAGCCCGATAATGTC 57.099 40.909 0.00 0.00 0.00 3.06
2582 4424 4.142182 CCAAATCAAACAGCCCGATAATGT 60.142 41.667 0.00 0.00 0.00 2.71
2583 4425 4.142182 ACCAAATCAAACAGCCCGATAATG 60.142 41.667 0.00 0.00 0.00 1.90
2585 4427 3.192422 CACCAAATCAAACAGCCCGATAA 59.808 43.478 0.00 0.00 0.00 1.75
2586 4428 2.752354 CACCAAATCAAACAGCCCGATA 59.248 45.455 0.00 0.00 0.00 2.92
2587 4429 1.545582 CACCAAATCAAACAGCCCGAT 59.454 47.619 0.00 0.00 0.00 4.18
2588 4430 0.958091 CACCAAATCAAACAGCCCGA 59.042 50.000 0.00 0.00 0.00 5.14
2617 4570 3.308401 AGAAGGGTGCCAAACTTTTGAT 58.692 40.909 3.17 0.00 40.55 2.57
2618 4571 2.693074 GAGAAGGGTGCCAAACTTTTGA 59.307 45.455 3.17 0.00 40.55 2.69
2629 4582 1.239968 CCACAGCTTGAGAAGGGTGC 61.240 60.000 0.00 0.00 34.75 5.01
2632 4585 3.993535 GCCACAGCTTGAGAAGGG 58.006 61.111 0.00 0.00 35.50 3.95
2715 4670 3.749665 TTGGCTCCAAAAATGAACTGG 57.250 42.857 0.00 0.00 32.44 4.00
2736 4694 1.530013 GCAGCTCAGGTTTGCCACAT 61.530 55.000 0.00 0.00 37.19 3.21
2785 4745 0.687427 GCCCAAATGTAGCCCATGGT 60.687 55.000 11.73 0.00 32.82 3.55
2806 4766 2.837591 AGAAAAAGGCCTGTTTGGTGTT 59.162 40.909 26.09 0.00 38.35 3.32
2818 4778 5.991606 AGTTAATGCTGGAAAAGAAAAAGGC 59.008 36.000 0.00 0.00 0.00 4.35
3009 4970 9.288576 AGATCTTACTGAAATGAACACAAATGA 57.711 29.630 0.00 0.00 0.00 2.57
3060 5030 4.578105 CCAAGAAGGCAAGATAAGGATGTC 59.422 45.833 0.00 0.00 0.00 3.06
3071 5110 0.746063 TTGCACACCAAGAAGGCAAG 59.254 50.000 0.00 0.00 43.14 4.01
3122 5161 1.047002 CATCTAGAGGGACCCAGCTG 58.953 60.000 14.60 6.78 0.00 4.24
3375 5414 0.886490 CCTGTGTCACTGGGTTGAGC 60.886 60.000 18.73 0.00 34.03 4.26
3442 5481 6.873605 AGGCAGCACAAATAAATAAAAGGAAC 59.126 34.615 0.00 0.00 0.00 3.62
3445 5484 6.633856 AGAGGCAGCACAAATAAATAAAAGG 58.366 36.000 0.00 0.00 0.00 3.11
3507 5587 7.468084 GGACGTCCAAATAATTAGCATTTAGCA 60.468 37.037 29.75 0.00 40.23 3.49
3508 5588 6.856426 GGACGTCCAAATAATTAGCATTTAGC 59.144 38.462 29.75 0.00 38.80 3.09
3509 5589 8.154649 AGGACGTCCAAATAATTAGCATTTAG 57.845 34.615 35.00 0.00 38.89 1.85
3510 5590 9.616156 TTAGGACGTCCAAATAATTAGCATTTA 57.384 29.630 35.00 10.85 38.89 1.40
3513 5593 8.403236 GTTTTAGGACGTCCAAATAATTAGCAT 58.597 33.333 35.00 12.98 38.89 3.79
3537 5617 7.354751 TGGGCAAAAAGTAATAAGTTCAGTT 57.645 32.000 0.00 0.00 0.00 3.16
3538 5618 6.969993 TGGGCAAAAAGTAATAAGTTCAGT 57.030 33.333 0.00 0.00 0.00 3.41
3701 5781 0.839946 AGGGCAGCATAAACGAGGAT 59.160 50.000 0.00 0.00 0.00 3.24
3717 5797 6.677913 CAACCAAAGTATGTGAAGTTAAGGG 58.322 40.000 0.00 0.00 0.00 3.95
3734 5814 5.726980 ATTATTTCAGCTCTGCAACCAAA 57.273 34.783 0.00 0.00 0.00 3.28
3833 5913 1.003839 TTCCTCGCGGCATTTCACT 60.004 52.632 6.13 0.00 0.00 3.41
3838 5918 1.315257 AATTGCTTCCTCGCGGCATT 61.315 50.000 6.13 0.66 35.84 3.56
3892 5972 4.554723 CGATTGACAAACTGGAACCAAGAC 60.555 45.833 0.00 0.00 0.00 3.01
3958 6038 5.699097 AACTTAAACGTGCATACACCATT 57.301 34.783 0.00 0.00 44.40 3.16
4056 6136 2.436292 GACTCCCTGCTGCTGCTG 60.436 66.667 17.00 15.58 40.48 4.41
4187 6267 1.153289 CCTCAGTTGGCATCCCTCG 60.153 63.158 0.00 0.00 0.00 4.63
4221 6301 2.386661 AATACAGCAGTGTTCCCTCG 57.613 50.000 0.00 0.00 38.19 4.63
4233 6313 8.451908 AAAATCCTACACATCCTTAATACAGC 57.548 34.615 0.00 0.00 0.00 4.40
4340 6420 4.705110 ATATAGTGCTGTGCATGGGTAA 57.295 40.909 0.00 0.00 41.91 2.85
4415 6495 5.043281 AGGGAGATAGGTAGAGAAAGGTTCA 60.043 44.000 0.00 0.00 0.00 3.18
4416 6496 5.460416 AGGGAGATAGGTAGAGAAAGGTTC 58.540 45.833 0.00 0.00 0.00 3.62
4424 6504 3.074687 TGGCTGTAGGGAGATAGGTAGAG 59.925 52.174 0.00 0.00 0.00 2.43
4463 6543 6.597672 TCACAACAATATAACTACCTTGCTGG 59.402 38.462 0.00 0.00 42.93 4.85
4543 6623 5.053811 TCTTCAACGAGCATTCAGTTGTTA 58.946 37.500 7.32 0.00 43.87 2.41
4587 6667 7.827236 AGTTGCACAGGTAGCTAACATATTTTA 59.173 33.333 12.26 0.00 0.00 1.52
4591 6671 5.359194 AGTTGCACAGGTAGCTAACATAT 57.641 39.130 12.26 0.00 0.00 1.78
4592 6672 4.819105 AGTTGCACAGGTAGCTAACATA 57.181 40.909 12.26 0.00 0.00 2.29
4595 6675 3.399330 TGAAGTTGCACAGGTAGCTAAC 58.601 45.455 0.00 0.00 0.00 2.34
4604 6684 2.874086 TGATCACACTGAAGTTGCACAG 59.126 45.455 0.00 0.75 39.65 3.66
4670 6751 4.095483 GGACAACAATTGTGCCATCTAGAG 59.905 45.833 12.82 0.00 45.52 2.43
4695 6776 9.901172 CTTTATACTGTACCAAAATTAGACCCT 57.099 33.333 0.00 0.00 0.00 4.34
4696 6777 9.117183 CCTTTATACTGTACCAAAATTAGACCC 57.883 37.037 0.00 0.00 0.00 4.46
4703 6784 9.695155 ATTGTAGCCTTTATACTGTACCAAAAT 57.305 29.630 0.00 0.00 0.00 1.82
4712 6793 7.391148 AACCACAATTGTAGCCTTTATACTG 57.609 36.000 11.53 0.00 0.00 2.74
4762 6843 5.402568 CGATGATTAATACAGGTGGAACGAG 59.597 44.000 0.00 0.00 38.12 4.18
4764 6845 5.047847 ACGATGATTAATACAGGTGGAACG 58.952 41.667 0.00 0.00 38.12 3.95
4838 6919 4.565652 CCTCCTTTTCCTCGAATTCTGGAA 60.566 45.833 19.41 19.41 38.00 3.53
4840 6921 3.274288 CCTCCTTTTCCTCGAATTCTGG 58.726 50.000 3.52 5.99 0.00 3.86
4902 6983 9.717942 GAGCTGTGAGAATAATTACAGGAATAT 57.282 33.333 0.00 0.00 0.00 1.28
4918 6999 7.609097 AATTATGATAGAAGGAGCTGTGAGA 57.391 36.000 0.00 0.00 0.00 3.27
4970 7051 2.143925 GGTACACAGAGGCACAAACTC 58.856 52.381 0.00 0.00 35.20 3.01
4990 7074 3.642705 TCAACGAAGAGTGACTGACATG 58.357 45.455 0.00 0.00 0.00 3.21
4999 7083 6.525121 TGTGACTTTTATCAACGAAGAGTG 57.475 37.500 0.00 0.00 0.00 3.51
5007 7091 8.878769 ACCAACAATTTTGTGACTTTTATCAAC 58.121 29.630 0.00 0.00 41.31 3.18
5013 7097 5.244755 AGCACCAACAATTTTGTGACTTTT 58.755 33.333 0.00 0.00 41.31 2.27
5059 7143 7.625828 AAGTGTAGGGCATAAGTAAACATTC 57.374 36.000 0.00 0.00 0.00 2.67
5107 7192 5.756918 AGTGTTCTCTAGATAGTGCTACCA 58.243 41.667 0.00 0.00 0.00 3.25
5139 7224 2.227194 TCCATCTGCAAGCATAGCATG 58.773 47.619 0.00 0.00 41.82 4.06
5166 7251 3.513119 GGATCCTCCGATCATCAATCAGA 59.487 47.826 3.84 0.00 45.89 3.27
5264 7349 0.179073 AAATCCGCGGTCAGGATCTG 60.179 55.000 27.15 0.00 46.99 2.90
5289 7374 6.087159 CACATTTCACGACAACAATCATGAAG 59.913 38.462 0.00 0.00 0.00 3.02
5290 7375 5.914074 CACATTTCACGACAACAATCATGAA 59.086 36.000 0.00 0.00 0.00 2.57
5292 7377 4.618067 CCACATTTCACGACAACAATCATG 59.382 41.667 0.00 0.00 0.00 3.07
5293 7378 4.518590 TCCACATTTCACGACAACAATCAT 59.481 37.500 0.00 0.00 0.00 2.45
5294 7379 3.879892 TCCACATTTCACGACAACAATCA 59.120 39.130 0.00 0.00 0.00 2.57
5295 7380 4.481930 TCCACATTTCACGACAACAATC 57.518 40.909 0.00 0.00 0.00 2.67
5296 7381 5.452078 AATCCACATTTCACGACAACAAT 57.548 34.783 0.00 0.00 0.00 2.71
5299 7392 6.422776 AGATAATCCACATTTCACGACAAC 57.577 37.500 0.00 0.00 0.00 3.32
5329 7422 6.940298 AGCTAACCATTAGAGCTTTGTTTACA 59.060 34.615 0.00 0.00 44.08 2.41
5366 7459 4.509230 CGTTCACATCTAATGCTGCTATGT 59.491 41.667 0.00 0.75 0.00 2.29
5367 7460 4.084171 CCGTTCACATCTAATGCTGCTATG 60.084 45.833 0.00 0.14 0.00 2.23
5371 7464 2.279741 TCCGTTCACATCTAATGCTGC 58.720 47.619 0.00 0.00 0.00 5.25
5384 7482 5.046878 AGTTGTAGGACACATAATCCGTTCA 60.047 40.000 0.00 0.00 41.52 3.18
5389 7487 6.640518 TCTGAAGTTGTAGGACACATAATCC 58.359 40.000 0.00 0.00 36.90 3.01
5408 7506 6.633500 ACGAATTCACATTTCCTTTCTGAA 57.367 33.333 6.22 0.00 0.00 3.02
5411 7509 8.846211 TCTTAAACGAATTCACATTTCCTTTCT 58.154 29.630 6.22 0.00 0.00 2.52
5415 7513 9.244799 GTTTTCTTAAACGAATTCACATTTCCT 57.755 29.630 6.22 0.00 34.79 3.36
5480 7578 9.625747 TCATGTGATTTTACATAGGCATTAGAA 57.374 29.630 0.00 0.00 39.17 2.10
5481 7579 9.276590 CTCATGTGATTTTACATAGGCATTAGA 57.723 33.333 0.00 0.00 39.17 2.10
5484 7582 7.201848 CCACTCATGTGATTTTACATAGGCATT 60.202 37.037 0.94 0.00 46.55 3.56
5487 7585 5.822519 TCCACTCATGTGATTTTACATAGGC 59.177 40.000 0.94 0.00 46.55 3.93
5505 7603 5.091261 ACATCCTTGACTATGTTCCACTC 57.909 43.478 0.00 0.00 32.43 3.51
5538 7639 4.713824 ATGATGTCATCTTTGGTTGCAG 57.286 40.909 13.90 0.00 28.78 4.41
5676 7777 4.314740 AAGTTTTGCGATACTTGCCAAA 57.685 36.364 8.80 0.00 33.55 3.28
5718 7819 4.275936 AGAAAAACGTGCAGCTACTTGATT 59.724 37.500 0.00 0.00 0.00 2.57
5720 7821 3.002246 CAGAAAAACGTGCAGCTACTTGA 59.998 43.478 0.00 0.00 0.00 3.02
5729 7830 1.034838 AGGTGGCAGAAAAACGTGCA 61.035 50.000 0.00 0.00 41.75 4.57
5766 7962 6.038714 AGGAGAACTTGAAACACATTTCTGAC 59.961 38.462 1.82 0.00 44.02 3.51
5803 7999 8.400947 ACAAATATCAGAATTGTAGACACATGC 58.599 33.333 0.00 0.00 35.63 4.06
5827 8023 0.682532 TGCAGGGTGCTTGAACAACA 60.683 50.000 0.00 0.00 45.31 3.33
5828 8024 0.031178 CTGCAGGGTGCTTGAACAAC 59.969 55.000 5.57 0.00 45.31 3.32
5854 8071 4.629634 AGTCGCACATTATTCATTTGACGA 59.370 37.500 0.00 0.00 0.00 4.20
5855 8072 4.897224 AGTCGCACATTATTCATTTGACG 58.103 39.130 0.00 0.00 0.00 4.35
5856 8073 5.961843 CAGAGTCGCACATTATTCATTTGAC 59.038 40.000 0.00 0.00 0.00 3.18
6006 8223 2.497770 CGGTTATTCCCGCCTCGT 59.502 61.111 0.00 0.00 41.78 4.18
6036 8253 9.707957 AATATTGTCTAAGAGAAGAGAAGGAGA 57.292 33.333 0.00 0.00 32.86 3.71
6048 8265 9.478019 CAACGCTGTAAAAATATTGTCTAAGAG 57.522 33.333 0.00 0.00 0.00 2.85
6060 8277 5.768317 AGCATGTAACAACGCTGTAAAAAT 58.232 33.333 0.00 0.00 33.45 1.82
6061 8278 5.008217 AGAGCATGTAACAACGCTGTAAAAA 59.992 36.000 0.00 0.00 33.45 1.94
6145 8370 2.968675 ACCTTTCTTCGGTCCGTATTG 58.031 47.619 11.88 0.46 0.00 1.90
6151 8376 4.097437 ACTTTTTGAACCTTTCTTCGGTCC 59.903 41.667 0.00 0.00 32.46 4.46
6193 8418 2.282674 TCACCACGAGGCGGTAGT 60.283 61.111 0.00 0.00 39.06 2.73
6283 8508 4.180946 CGACCTCCTCGGCTCACG 62.181 72.222 0.00 0.00 46.11 4.35
6316 8541 5.594725 ACCACTAGATCTATCGTGATTGTGT 59.405 40.000 18.91 8.57 0.00 3.72
6321 8546 4.895961 TCGACCACTAGATCTATCGTGAT 58.104 43.478 18.91 6.26 0.00 3.06
6328 8553 3.478509 GGAGCTTCGACCACTAGATCTA 58.521 50.000 1.69 1.69 0.00 1.98
6335 8560 1.303888 TACCGGAGCTTCGACCACT 60.304 57.895 18.24 0.00 0.00 4.00
6344 8569 2.442272 ATCGTGCCTACCGGAGCT 60.442 61.111 9.46 0.00 0.00 4.09
6361 8586 0.319555 GCTTGCTGTAGTCACGGTCA 60.320 55.000 0.00 0.00 33.19 4.02
6421 8646 2.166664 AGCTCCTGATCTCCGTTTGTAC 59.833 50.000 0.00 0.00 0.00 2.90
6520 8745 2.336478 ACGCTCGTCTCTCCTGTGG 61.336 63.158 0.00 0.00 0.00 4.17
6577 8802 2.683933 TGTCCGGCCTCTTCCCTC 60.684 66.667 0.00 0.00 0.00 4.30
6611 8836 4.459089 GTGCCGCCTCTCCCTGTC 62.459 72.222 0.00 0.00 0.00 3.51
6714 8939 1.344763 ACAGTCTACGCCTTTCAAGCT 59.655 47.619 0.00 0.00 0.00 3.74
6768 8999 9.627395 TCTAAAAACAACATTCTGAAAACGAAA 57.373 25.926 0.00 0.00 0.00 3.46
6796 9031 5.344933 GCACAACAAAACGTTCTCTCTTTTT 59.655 36.000 0.00 0.00 34.86 1.94
6801 9038 2.363220 CGCACAACAAAACGTTCTCTC 58.637 47.619 0.00 0.00 34.86 3.20
6802 9039 1.063469 CCGCACAACAAAACGTTCTCT 59.937 47.619 0.00 0.00 34.86 3.10
6803 9040 1.062880 TCCGCACAACAAAACGTTCTC 59.937 47.619 0.00 0.00 34.86 2.87
6806 9043 2.570442 ATTCCGCACAACAAAACGTT 57.430 40.000 0.00 0.00 38.83 3.99
6889 9126 2.563086 GAAATGTTCGCGGCAGACGG 62.563 60.000 6.13 0.00 44.51 4.79
6891 9128 0.179215 CAGAAATGTTCGCGGCAGAC 60.179 55.000 6.13 0.78 34.02 3.51
6946 9183 6.996282 CACTGGAAGAAAAAGGTAAGGTAAGA 59.004 38.462 0.00 0.00 37.43 2.10
6951 9188 6.901081 AATCACTGGAAGAAAAAGGTAAGG 57.099 37.500 0.00 0.00 37.43 2.69
7058 9295 9.788889 CCCGTAATAACCCTTCTATTTCTTTAT 57.211 33.333 0.00 0.00 0.00 1.40
7069 9308 2.744166 GCCAGACCCGTAATAACCCTTC 60.744 54.545 0.00 0.00 0.00 3.46
7233 9474 1.083489 TCGACCACGCAAAATGATCC 58.917 50.000 0.00 0.00 39.58 3.36
7324 9574 3.699955 TTCCACGCCAGATCGCTCG 62.700 63.158 2.80 2.80 0.00 5.03
7330 9580 2.094675 CATTTCCTTTCCACGCCAGAT 58.905 47.619 0.00 0.00 0.00 2.90
7336 9586 3.758554 ACCATTCTCATTTCCTTTCCACG 59.241 43.478 0.00 0.00 0.00 4.94
7398 9648 2.513204 CGCTCACATGGGCCTCAG 60.513 66.667 4.53 0.00 0.00 3.35
7414 9664 3.248171 GCTGCTACGCGAGGTTCG 61.248 66.667 15.93 0.00 43.89 3.95
7415 9665 2.126071 TGCTGCTACGCGAGGTTC 60.126 61.111 15.93 0.00 0.00 3.62
7424 9674 2.124942 GCTGGGGAGTGCTGCTAC 60.125 66.667 0.00 0.00 0.00 3.58
7474 9757 1.758906 GGGTAGCTCCTCCTTCGCT 60.759 63.158 0.00 0.00 37.77 4.93
7525 9808 2.802816 AGCTGCTTGAGTTTGTAACGAG 59.197 45.455 0.00 0.00 36.23 4.18
7531 9814 1.097547 ACGCAGCTGCTTGAGTTTGT 61.098 50.000 34.22 19.91 39.32 2.83
7637 9920 0.476611 AAAGAGAGGAGGCCACCCTT 60.477 55.000 16.55 9.40 43.12 3.95
7661 9947 2.396590 TATTTGTCAGGCGACCTTCC 57.603 50.000 6.94 0.00 41.85 3.46
7718 10005 1.308998 AACAGCAGGTGAAAGTTCCG 58.691 50.000 6.61 0.00 0.00 4.30
7722 10009 3.004752 ACTCAAACAGCAGGTGAAAGT 57.995 42.857 6.61 1.29 0.00 2.66
7723 10010 3.499918 CCTACTCAAACAGCAGGTGAAAG 59.500 47.826 6.61 0.68 0.00 2.62
7727 10014 1.347707 TCCCTACTCAAACAGCAGGTG 59.652 52.381 0.00 0.00 0.00 4.00
7730 10017 2.012673 GCATCCCTACTCAAACAGCAG 58.987 52.381 0.00 0.00 0.00 4.24
7731 10018 1.350684 TGCATCCCTACTCAAACAGCA 59.649 47.619 0.00 0.00 0.00 4.41
7732 10019 2.012673 CTGCATCCCTACTCAAACAGC 58.987 52.381 0.00 0.00 0.00 4.40
7733 10020 2.012673 GCTGCATCCCTACTCAAACAG 58.987 52.381 0.00 0.00 0.00 3.16
7734 10021 1.630369 AGCTGCATCCCTACTCAAACA 59.370 47.619 1.02 0.00 0.00 2.83
7735 10022 2.012673 CAGCTGCATCCCTACTCAAAC 58.987 52.381 0.00 0.00 0.00 2.93
7737 10024 1.065926 CACAGCTGCATCCCTACTCAA 60.066 52.381 15.27 0.00 0.00 3.02
7738 10025 0.538584 CACAGCTGCATCCCTACTCA 59.461 55.000 15.27 0.00 0.00 3.41
7739 10026 0.539051 ACACAGCTGCATCCCTACTC 59.461 55.000 15.27 0.00 0.00 2.59
7740 10027 0.251354 CACACAGCTGCATCCCTACT 59.749 55.000 15.27 0.00 0.00 2.57
7741 10028 0.036010 ACACACAGCTGCATCCCTAC 60.036 55.000 15.27 0.00 0.00 3.18
7742 10029 1.207089 GTACACACAGCTGCATCCCTA 59.793 52.381 15.27 0.00 0.00 3.53
7743 10030 0.036010 GTACACACAGCTGCATCCCT 60.036 55.000 15.27 0.00 0.00 4.20
7744 10031 0.321564 TGTACACACAGCTGCATCCC 60.322 55.000 15.27 0.00 0.00 3.85
7745 10032 1.081892 CTGTACACACAGCTGCATCC 58.918 55.000 15.27 0.00 45.44 3.51
7754 10041 1.346395 CCCTTAGCACCTGTACACACA 59.654 52.381 0.00 0.00 0.00 3.72
7755 10042 1.346722 ACCCTTAGCACCTGTACACAC 59.653 52.381 0.00 0.00 0.00 3.82
7756 10043 1.346395 CACCCTTAGCACCTGTACACA 59.654 52.381 0.00 0.00 0.00 3.72
7757 10044 1.346722 ACACCCTTAGCACCTGTACAC 59.653 52.381 0.00 0.00 0.00 2.90
7758 10045 1.621814 GACACCCTTAGCACCTGTACA 59.378 52.381 0.00 0.00 0.00 2.90
7759 10046 1.621814 TGACACCCTTAGCACCTGTAC 59.378 52.381 0.00 0.00 0.00 2.90
7760 10047 1.621814 GTGACACCCTTAGCACCTGTA 59.378 52.381 0.00 0.00 0.00 2.74
7761 10048 0.396811 GTGACACCCTTAGCACCTGT 59.603 55.000 0.00 0.00 0.00 4.00
7762 10049 0.396435 TGTGACACCCTTAGCACCTG 59.604 55.000 2.45 0.00 0.00 4.00
7763 10050 1.362224 ATGTGACACCCTTAGCACCT 58.638 50.000 2.45 0.00 0.00 4.00
7764 10051 3.270877 CTTATGTGACACCCTTAGCACC 58.729 50.000 2.45 0.00 0.00 5.01
7765 10052 3.055385 TCCTTATGTGACACCCTTAGCAC 60.055 47.826 2.45 0.00 0.00 4.40
7766 10053 3.178046 TCCTTATGTGACACCCTTAGCA 58.822 45.455 2.45 0.00 0.00 3.49
7767 10054 3.906720 TCCTTATGTGACACCCTTAGC 57.093 47.619 2.45 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.