AutoCloner

Multiple sequence alignment - TraesCS7D01G456700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G456700	chr7D	100.000	2291	0	0	1	2291	575407378	575409668	0.000000e+00	4231.0
1	TraesCS7D01G456700	chr7D	87.763	760	53	24	785	1526	575441414	575442151	0.000000e+00	852.0
2	TraesCS7D01G456700	chr7D	82.580	907	99	39	658	1525	574774505	574773619	0.000000e+00	745.0
3	TraesCS7D01G456700	chr7D	82.835	769	82	30	787	1525	574764368	574763620	0.000000e+00	643.0
4	TraesCS7D01G456700	chr7D	91.489	94	7	1	2120	2213	13688839	13688747	6.640000e-26	128.0
5	TraesCS7D01G456700	chr7B	91.806	2148	111	29	1	2117	636939381	636941494	0.000000e+00	2931.0
6	TraesCS7D01G456700	chr7B	85.756	681	59	25	657	1324	634647710	634647055	0.000000e+00	686.0
7	TraesCS7D01G456700	chr7B	86.022	651	46	20	680	1295	636983596	636984236	0.000000e+00	656.0
8	TraesCS7D01G456700	chr7A	91.368	1900	93	26	248	2117	664999051	665000909	0.000000e+00	2534.0
9	TraesCS7D01G456700	chr7A	87.377	713	55	19	829	1526	665427555	665428247	0.000000e+00	785.0
10	TraesCS7D01G456700	chr7A	81.538	910	96	40	658	1525	664415335	664414456	0.000000e+00	684.0
11	TraesCS7D01G456700	chr7A	82.552	768	93	26	782	1525	664372145	664371395	2.480000e-179	638.0
12	TraesCS7D01G456700	chr7A	91.525	177	4	4	1	171	664998880	664999051	1.370000e-57	233.0
13	TraesCS7D01G456700	chr7A	90.076	131	12	1	2131	2261	665001295	665001424	3.910000e-38	169.0
14	TraesCS7D01G456700	chr7A	91.919	99	6	2	2114	2211	80430073	80429976	1.100000e-28	137.0
15	TraesCS7D01G456700	chr2D	95.604	91	3	1	2120	2209	81245538	81245628	6.600000e-31	145.0
16	TraesCS7D01G456700	chr2D	94.382	89	3	2	2123	2209	130844491	130844579	3.970000e-28	135.0
17	TraesCS7D01G456700	chrUn	91.579	95	7	1	2120	2213	51454410	51454316	1.850000e-26	130.0
18	TraesCS7D01G456700	chr1D	90.099	101	8	2	2120	2220	318585715	318585617	1.850000e-26	130.0
19	TraesCS7D01G456700	chr4A	89.216	102	7	4	2119	2218	474782013	474782112	8.590000e-25	124.0
20	TraesCS7D01G456700	chr3D	89.796	98	8	2	2120	2217	106221893	106221798	8.590000e-25	124.0
21	TraesCS7D01G456700	chr6D	77.953	127	21	6	443	563	352150238	352150363	3.160000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G456700	chr7D	575407378	575409668	2290	False	4231.000000	4231	100.000000	1	2291	1	chr7D.!!$F1	2290
1	TraesCS7D01G456700	chr7D	575441414	575442151	737	False	852.000000	852	87.763000	785	1526	1	chr7D.!!$F2	741
2	TraesCS7D01G456700	chr7D	574773619	574774505	886	True	745.000000	745	82.580000	658	1525	1	chr7D.!!$R3	867
3	TraesCS7D01G456700	chr7D	574763620	574764368	748	True	643.000000	643	82.835000	787	1525	1	chr7D.!!$R2	738
4	TraesCS7D01G456700	chr7B	636939381	636941494	2113	False	2931.000000	2931	91.806000	1	2117	1	chr7B.!!$F1	2116
5	TraesCS7D01G456700	chr7B	634647055	634647710	655	True	686.000000	686	85.756000	657	1324	1	chr7B.!!$R1	667
6	TraesCS7D01G456700	chr7B	636983596	636984236	640	False	656.000000	656	86.022000	680	1295	1	chr7B.!!$F2	615
7	TraesCS7D01G456700	chr7A	664998880	665001424	2544	False	978.666667	2534	90.989667	1	2261	3	chr7A.!!$F2	2260
8	TraesCS7D01G456700	chr7A	665427555	665428247	692	False	785.000000	785	87.377000	829	1526	1	chr7A.!!$F1	697
9	TraesCS7D01G456700	chr7A	664414456	664415335	879	True	684.000000	684	81.538000	658	1525	1	chr7A.!!$R3	867
10	TraesCS7D01G456700	chr7A	664371395	664372145	750	True	638.000000	638	82.552000	782	1525	1	chr7A.!!$R2	743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
383	395	0.893447	AGAAGCAAATCTTGGCTGCC	59.107	50.0	12.87	12.87	40.93	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1607	1736	0.029834	CACAGTGCTGCACCTTGAAC	59.97	55.0	27.74	2.45	34.49	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
173	183	2.202743	GCATGAGCTACACGCGGA	60.203	61.111	12.47	0.00	45.59	5.54
265	277	5.996219	TGTGACATGTTTTAGTGTGTATGC	58.004	37.500	0.00	0.00	0.00	3.14
289	301	9.358406	TGCTCATCCATTTTGATCTGTATTAAT	57.642	29.630	0.00	0.00	0.00	1.40
337	349	4.163427	TCATAATTAGGAGCAGAGGGAGG	58.837	47.826	0.00	0.00	0.00	4.30
383	395	0.893447	AGAAGCAAATCTTGGCTGCC	59.107	50.000	12.87	12.87	40.93	4.85
397	409	1.547372	GGCTGCCACATGTTCATTTCT	59.453	47.619	15.17	0.00	0.00	2.52
529	543	9.440784	CTATCGAGCTAACTGAAGTTAACTAAG	57.559	37.037	8.92	12.04	37.14	2.18
530	544	6.091437	TCGAGCTAACTGAAGTTAACTAAGC	58.909	40.000	8.92	10.79	37.14	3.09
566	580	5.743398	CCCTGTTTATTGCGTCATTTACATG	59.257	40.000	0.00	0.00	0.00	3.21
667	683	1.425831	TGTAGGGGCAGCTAACCAAAA	59.574	47.619	7.24	0.00	0.00	2.44
796	845	3.687212	CAGTAAACGCTCTCTCTCTCTCA	59.313	47.826	0.00	0.00	0.00	3.27
798	847	2.192664	AACGCTCTCTCTCTCTCACA	57.807	50.000	0.00	0.00	0.00	3.58
800	849	1.271108	ACGCTCTCTCTCTCTCACACA	60.271	52.381	0.00	0.00	0.00	3.72
802	851	2.158559	GCTCTCTCTCTCTCACACACA	58.841	52.381	0.00	0.00	0.00	3.72
882	946	2.912025	CCCAAGCCAACGCCAAGT	60.912	61.111	0.00	0.00	34.57	3.16
1387	1506	3.058432	CGTTCACTCGTTGACTCTCCTAA	60.058	47.826	0.00	0.00	32.26	2.69
1490	1615	5.164415	CGCTTTATAACGCGCATTGTAATTC	60.164	40.000	21.20	1.78	43.01	2.17
1526	1654	9.390795	CTCTTGTCAGAAATAACAAGTGAAATG	57.609	33.333	13.22	0.00	40.11	2.32
1585	1714	5.057149	GCTGGTTATATGTAAGTGGAGTGG	58.943	45.833	0.00	0.00	0.00	4.00
1607	1736	5.102313	GGAAATTTTCTTGGCATAACTCGG	58.898	41.667	8.93	0.00	0.00	4.63
1615	1744	1.349688	TGGCATAACTCGGTTCAAGGT	59.650	47.619	0.00	0.00	0.00	3.50
1689	1826	0.034337	GCCACGACCAGGAACAAGTA	59.966	55.000	0.00	0.00	0.00	2.24
1736	1873	3.995506	GATGGTTCGGGGTGCAGGG	62.996	68.421	0.00	0.00	0.00	4.45
1751	1888	0.958382	CAGGGTCGCCGGAAAAATCA	60.958	55.000	5.05	0.00	0.00	2.57
1846	1986	0.739561	GAGAGGTCGAACGGTAGCAT	59.260	55.000	0.00	0.00	0.00	3.79
1931	2072	3.558931	ATGAACAATGGCACGATCCTA	57.441	42.857	0.00	0.00	0.00	2.94
2002	2143	9.559958	GAAAATAATCCAGTCAACTTACACATG	57.440	33.333	0.00	0.00	0.00	3.21
2043	2200	2.353803	GGTATGCACGTGTTTCCTCTCT	60.354	50.000	18.38	0.00	0.00	3.10
2044	2201	3.119245	GGTATGCACGTGTTTCCTCTCTA	60.119	47.826	18.38	0.00	0.00	2.43
2045	2202	3.678056	ATGCACGTGTTTCCTCTCTAA	57.322	42.857	18.38	0.00	0.00	2.10
2046	2203	3.678056	TGCACGTGTTTCCTCTCTAAT	57.322	42.857	18.38	0.00	0.00	1.73
2047	2204	4.794278	TGCACGTGTTTCCTCTCTAATA	57.206	40.909	18.38	0.00	0.00	0.98
2048	2205	5.339008	TGCACGTGTTTCCTCTCTAATAT	57.661	39.130	18.38	0.00	0.00	1.28
2049	2206	5.730550	TGCACGTGTTTCCTCTCTAATATT	58.269	37.500	18.38	0.00	0.00	1.28
2050	2207	5.580691	TGCACGTGTTTCCTCTCTAATATTG	59.419	40.000	18.38	0.00	0.00	1.90
2052	2209	6.106673	CACGTGTTTCCTCTCTAATATTGGT	58.893	40.000	7.58	0.00	0.00	3.67
2053	2210	6.594159	CACGTGTTTCCTCTCTAATATTGGTT	59.406	38.462	7.58	0.00	0.00	3.67
2054	2211	6.817140	ACGTGTTTCCTCTCTAATATTGGTTC	59.183	38.462	0.00	0.00	0.00	3.62
2055	2212	6.816640	CGTGTTTCCTCTCTAATATTGGTTCA	59.183	38.462	0.00	0.00	0.00	3.18
2056	2213	7.201530	CGTGTTTCCTCTCTAATATTGGTTCAC	60.202	40.741	0.00	2.27	0.00	3.18
2057	2214	7.824779	GTGTTTCCTCTCTAATATTGGTTCACT	59.175	37.037	0.00	0.00	0.00	3.41
2058	2215	8.041323	TGTTTCCTCTCTAATATTGGTTCACTC	58.959	37.037	0.00	0.00	0.00	3.51
2059	2216	6.392625	TCCTCTCTAATATTGGTTCACTCG	57.607	41.667	0.00	0.00	0.00	4.18
2060	2217	5.302059	TCCTCTCTAATATTGGTTCACTCGG	59.698	44.000	0.00	0.00	0.00	4.63
2061	2218	4.945246	TCTCTAATATTGGTTCACTCGGC	58.055	43.478	0.00	0.00	0.00	5.54
2062	2219	4.649674	TCTCTAATATTGGTTCACTCGGCT	59.350	41.667	0.00	0.00	0.00	5.52
2063	2220	4.693283	TCTAATATTGGTTCACTCGGCTG	58.307	43.478	0.00	0.00	0.00	4.85
2064	2221	3.350219	AATATTGGTTCACTCGGCTGT	57.650	42.857	0.00	0.00	0.00	4.40
2092	2249	1.645034	ACGAATGAGAATGAGCGTGG	58.355	50.000	0.00	0.00	0.00	4.94
2097	2254	0.538584	TGAGAATGAGCGTGGCATCT	59.461	50.000	0.00	0.00	0.00	2.90
2099	2256	1.329906	GAGAATGAGCGTGGCATCTTG	59.670	52.381	0.00	0.00	0.00	3.02
2100	2257	0.248377	GAATGAGCGTGGCATCTTGC	60.248	55.000	0.00	0.00	44.08	4.01
2117	2276	5.798125	TCTTGCAAAAGAGAGAGAGAGAA	57.202	39.130	0.00	0.00	0.00	2.87
2118	2277	6.357579	TCTTGCAAAAGAGAGAGAGAGAAT	57.642	37.500	0.00	0.00	0.00	2.40
2119	2278	6.767456	TCTTGCAAAAGAGAGAGAGAGAATT	58.233	36.000	0.00	0.00	0.00	2.17
2120	2279	6.873076	TCTTGCAAAAGAGAGAGAGAGAATTC	59.127	38.462	0.00	0.00	0.00	2.17
2123	2282	7.845037	TGCAAAAGAGAGAGAGAGAATTCATA	58.155	34.615	8.44	0.00	0.00	2.15
2143	2670	3.750373	GAGTGGGGTGTGCGTGTGT	62.750	63.158	0.00	0.00	0.00	3.72
2155	2682	0.787787	GCGTGTGTGCGTTCATAAGA	59.212	50.000	0.00	0.00	0.00	2.10
2156	2683	1.193650	GCGTGTGTGCGTTCATAAGAA	59.806	47.619	0.00	0.00	0.00	2.52
2160	2687	4.641954	GTGTGTGCGTTCATAAGAATGAG	58.358	43.478	4.12	0.00	42.97	2.90
2170	2697	3.735746	TCATAAGAATGAGTGTATGCGCG	59.264	43.478	0.00	0.00	37.20	6.86
2187	2714	0.111089	GCGTATGTATGAGCGCTTGC	60.111	55.000	13.26	0.00	45.48	4.01
2197	2724	0.179171	GAGCGCTTGCGTCTGTACTA	60.179	55.000	13.26	0.00	45.69	1.82
2202	2729	3.431856	CGCTTGCGTCTGTACTATGTTA	58.568	45.455	6.86	0.00	0.00	2.41
2203	2730	3.482472	CGCTTGCGTCTGTACTATGTTAG	59.518	47.826	6.86	0.00	0.00	2.34
2248	2775	6.931838	AGAAACATAGTTGAGGTCGATAACA	58.068	36.000	0.00	0.00	0.00	2.41
2250	2777	8.041323	AGAAACATAGTTGAGGTCGATAACATT	58.959	33.333	0.00	0.00	0.00	2.71
2256	2783	4.585955	TGAGGTCGATAACATTCTAGCC	57.414	45.455	0.00	0.00	0.00	3.93
2261	2788	4.208666	GGTCGATAACATTCTAGCCGTTTC	59.791	45.833	0.00	0.00	0.00	2.78
2262	2789	5.041940	GTCGATAACATTCTAGCCGTTTCT	58.958	41.667	0.00	0.00	0.00	2.52
2263	2790	5.173492	GTCGATAACATTCTAGCCGTTTCTC	59.827	44.000	0.00	0.00	0.00	2.87
2264	2791	5.041287	CGATAACATTCTAGCCGTTTCTCA	58.959	41.667	0.00	0.00	0.00	3.27
2265	2792	5.518847	CGATAACATTCTAGCCGTTTCTCAA	59.481	40.000	0.00	0.00	0.00	3.02
2266	2793	6.291849	CGATAACATTCTAGCCGTTTCTCAAG	60.292	42.308	0.00	0.00	0.00	3.02
2267	2794	4.537135	ACATTCTAGCCGTTTCTCAAGA	57.463	40.909	0.00	0.00	0.00	3.02
2268	2795	4.894784	ACATTCTAGCCGTTTCTCAAGAA	58.105	39.130	0.00	0.00	0.00	2.52
2269	2796	5.491982	ACATTCTAGCCGTTTCTCAAGAAT	58.508	37.500	0.00	0.00	34.80	2.40
2270	2797	5.582665	ACATTCTAGCCGTTTCTCAAGAATC	59.417	40.000	0.00	0.00	32.76	2.52
2271	2798	4.801330	TCTAGCCGTTTCTCAAGAATCA	57.199	40.909	0.00	0.00	33.54	2.57
2272	2799	4.748892	TCTAGCCGTTTCTCAAGAATCAG	58.251	43.478	0.00	0.00	33.54	2.90
2273	2800	3.685139	AGCCGTTTCTCAAGAATCAGA	57.315	42.857	0.00	0.00	33.54	3.27
2274	2801	4.008074	AGCCGTTTCTCAAGAATCAGAA	57.992	40.909	0.00	0.00	33.54	3.02
2275	2802	3.999663	AGCCGTTTCTCAAGAATCAGAAG	59.000	43.478	0.00	0.00	33.54	2.85
2276	2803	3.997021	GCCGTTTCTCAAGAATCAGAAGA	59.003	43.478	0.00	0.00	33.54	2.87
2277	2804	4.633565	GCCGTTTCTCAAGAATCAGAAGAT	59.366	41.667	0.00	0.00	33.54	2.40
2278	2805	5.812642	GCCGTTTCTCAAGAATCAGAAGATA	59.187	40.000	0.00	0.00	33.08	1.98
2279	2806	6.313905	GCCGTTTCTCAAGAATCAGAAGATAA	59.686	38.462	0.00	0.00	33.08	1.75
2280	2807	7.148407	GCCGTTTCTCAAGAATCAGAAGATAAA	60.148	37.037	0.00	0.00	33.08	1.40
2281	2808	8.171840	CCGTTTCTCAAGAATCAGAAGATAAAC	58.828	37.037	0.00	0.00	33.08	2.01
2282	2809	8.712363	CGTTTCTCAAGAATCAGAAGATAAACA	58.288	33.333	0.00	0.00	33.08	2.83

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
260	272	6.630444	ACAGATCAAAATGGATGAGCATAC	57.370	37.500	0.00	0.00	35.71	2.39
327	339	4.689612	TTAATGTGTATCCTCCCTCTGC	57.310	45.455	0.00	0.00	0.00	4.26
377	389	1.547372	AGAAATGAACATGTGGCAGCC	59.453	47.619	3.66	3.66	0.00	4.85
383	395	9.173939	GTTTTTACAGAGAGAAATGAACATGTG	57.826	33.333	0.00	0.00	0.00	3.21
397	409	5.076182	TGGGCATGAATGTTTTTACAGAGA	58.924	37.500	0.00	0.00	0.00	3.10
566	580	2.133742	AAACAGCTCGTGCATGTGGC	62.134	55.000	12.58	15.16	42.74	5.01
796	845	0.181114	AGAGCATGTGGTGTGTGTGT	59.819	50.000	0.00	0.00	0.00	3.72
798	847	0.535780	CCAGAGCATGTGGTGTGTGT	60.536	55.000	8.27	0.00	46.08	3.72
800	849	4.806936	CCAGAGCATGTGGTGTGT	57.193	55.556	8.27	0.00	46.08	3.72
1104	1202	4.407694	TCGCATTCGTCGTCGCCA	62.408	61.111	0.00	0.00	36.96	5.69
1387	1506	2.620585	GCAAAAGAGAAGACAACAGGCT	59.379	45.455	0.00	0.00	0.00	4.58
1490	1615	1.068588	TCTGACAAGAGGTCCAACGTG	59.931	52.381	0.00	0.00	46.38	4.49
1556	1685	5.006358	CCACTTACATATAACCAGCACGAAC	59.994	44.000	0.00	0.00	0.00	3.95
1560	1689	5.523916	CACTCCACTTACATATAACCAGCAC	59.476	44.000	0.00	0.00	0.00	4.40
1585	1714	5.709966	ACCGAGTTATGCCAAGAAAATTTC	58.290	37.500	0.00	0.00	0.00	2.17
1607	1736	0.029834	CACAGTGCTGCACCTTGAAC	59.970	55.000	27.74	2.45	34.49	3.18
1736	1873	1.401018	CCAACTGATTTTTCCGGCGAC	60.401	52.381	9.30	0.00	0.00	5.19
1751	1888	1.964373	CTAAACCGGCGCACCAACT	60.964	57.895	10.83	0.00	34.57	3.16
1803	1943	3.003173	CCGCCCTCCTTCACCTCA	61.003	66.667	0.00	0.00	0.00	3.86
1830	1970	1.112113	ATGATGCTACCGTTCGACCT	58.888	50.000	0.00	0.00	0.00	3.85
1831	1971	1.593006	CAATGATGCTACCGTTCGACC	59.407	52.381	0.00	0.00	0.00	4.79
1894	2035	3.140325	TCATTTTCTTTCTCCCGTGCT	57.860	42.857	0.00	0.00	0.00	4.40
1897	2038	5.278957	CCATTGTTCATTTTCTTTCTCCCGT	60.279	40.000	0.00	0.00	0.00	5.28
1931	2072	2.305927	ACCAGATCTCAATCCAACGGTT	59.694	45.455	0.00	0.00	31.78	4.44
2002	2143	5.722021	ACCAAATATTCAAGTGACCAACC	57.278	39.130	0.00	0.00	0.00	3.77
2043	2200	4.481368	ACAGCCGAGTGAACCAATATTA	57.519	40.909	0.00	0.00	0.00	0.98
2044	2201	3.350219	ACAGCCGAGTGAACCAATATT	57.650	42.857	0.00	0.00	0.00	1.28
2045	2202	3.350219	AACAGCCGAGTGAACCAATAT	57.650	42.857	0.00	0.00	0.00	1.28
2046	2203	2.851263	AACAGCCGAGTGAACCAATA	57.149	45.000	0.00	0.00	0.00	1.90
2047	2204	1.981256	AAACAGCCGAGTGAACCAAT	58.019	45.000	0.00	0.00	0.00	3.16
2048	2205	1.757682	AAAACAGCCGAGTGAACCAA	58.242	45.000	0.00	0.00	0.00	3.67
2049	2206	1.757682	AAAAACAGCCGAGTGAACCA	58.242	45.000	0.00	0.00	0.00	3.67
2092	2249	4.252073	TCTCTCTCTCTTTTGCAAGATGC	58.748	43.478	0.00	0.00	45.29	3.91
2097	2254	6.528321	TGAATTCTCTCTCTCTCTTTTGCAA	58.472	36.000	7.05	0.00	0.00	4.08
2099	2256	7.439056	CCTATGAATTCTCTCTCTCTCTTTTGC	59.561	40.741	7.05	0.00	0.00	3.68
2100	2257	8.694540	TCCTATGAATTCTCTCTCTCTCTTTTG	58.305	37.037	7.05	0.00	0.00	2.44
2101	2258	8.837099	TCCTATGAATTCTCTCTCTCTCTTTT	57.163	34.615	7.05	0.00	0.00	2.27
2103	2260	7.503566	CACTCCTATGAATTCTCTCTCTCTCTT	59.496	40.741	7.05	0.00	0.00	2.85
2117	2276	1.212935	GCACACCCCACTCCTATGAAT	59.787	52.381	0.00	0.00	0.00	2.57
2118	2277	0.618458	GCACACCCCACTCCTATGAA	59.382	55.000	0.00	0.00	0.00	2.57
2119	2278	1.613317	CGCACACCCCACTCCTATGA	61.613	60.000	0.00	0.00	0.00	2.15
2120	2279	1.153369	CGCACACCCCACTCCTATG	60.153	63.158	0.00	0.00	0.00	2.23
2123	2282	3.941188	CACGCACACCCCACTCCT	61.941	66.667	0.00	0.00	0.00	3.69
2143	2670	5.006649	GCATACACTCATTCTTATGAACGCA	59.993	40.000	0.00	0.00	40.17	5.24
2155	2682	2.821546	ACATACGCGCATACACTCATT	58.178	42.857	5.73	0.00	0.00	2.57
2156	2683	2.509052	ACATACGCGCATACACTCAT	57.491	45.000	5.73	0.00	0.00	2.90
2160	2687	2.090658	GCTCATACATACGCGCATACAC	59.909	50.000	5.73	0.00	0.00	2.90
2170	2697	1.190323	GACGCAAGCGCTCATACATAC	59.810	52.381	12.06	0.00	44.19	2.39
2187	2714	8.738199	TGTCTTTTTCTAACATAGTACAGACG	57.262	34.615	0.00	0.00	0.00	4.18
2219	2746	6.989659	TCGACCTCAACTATGTTTCTACTTT	58.010	36.000	0.00	0.00	0.00	2.66
2248	2775	5.734720	TGATTCTTGAGAAACGGCTAGAAT	58.265	37.500	0.00	0.00	37.61	2.40
2250	2777	4.462834	TCTGATTCTTGAGAAACGGCTAGA	59.537	41.667	0.00	0.00	37.61	2.43
2256	2783	8.712363	TGTTTATCTTCTGATTCTTGAGAAACG	58.288	33.333	0.00	0.00	39.91	3.60

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.