Multiple sequence alignment - TraesCS7D01G455800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G455800 chr7D 100.000 2285 0 0 1 2285 574765151 574762867 0.000000e+00 4220.0
1 TraesCS7D01G455800 chr7D 87.685 1283 86 35 284 1537 574774853 574773614 0.000000e+00 1428.0
2 TraesCS7D01G455800 chr7D 84.746 1003 94 37 574 1551 575441201 575442169 0.000000e+00 950.0
3 TraesCS7D01G455800 chr7D 82.835 769 82 30 784 1532 575408164 575408902 0.000000e+00 643.0
4 TraesCS7D01G455800 chr7D 83.810 210 22 5 1 208 574776912 574776713 3.000000e-44 189.0
5 TraesCS7D01G455800 chr7D 76.955 243 33 14 1885 2110 572035493 572035257 1.430000e-22 117.0
6 TraesCS7D01G455800 chr7B 86.739 1478 129 37 266 1702 634580530 634579079 0.000000e+00 1581.0
7 TraesCS7D01G455800 chr7B 80.522 1340 162 68 9 1288 636982935 636984235 0.000000e+00 937.0
8 TraesCS7D01G455800 chr7B 86.136 880 71 28 789 1645 634647580 634646729 0.000000e+00 902.0
9 TraesCS7D01G455800 chr7B 85.097 671 61 20 628 1288 636940033 636940674 0.000000e+00 649.0
10 TraesCS7D01G455800 chr7B 86.849 403 30 13 378 769 634647961 634647571 1.620000e-116 429.0
11 TraesCS7D01G455800 chr7A 90.693 967 57 15 715 1672 664372199 664371257 0.000000e+00 1256.0
12 TraesCS7D01G455800 chr7A 87.825 1076 85 25 619 1682 664415345 664414304 0.000000e+00 1219.0
13 TraesCS7D01G455800 chr7A 88.095 168 14 2 1773 1934 664370832 664370665 6.440000e-46 195.0
14 TraesCS7D01G455800 chr7A 91.667 132 7 4 574 702 665426944 665427074 1.800000e-41 180.0
15 TraesCS7D01G455800 chr7A 88.793 116 8 3 530 643 664377970 664377858 1.100000e-28 137.0
16 TraesCS7D01G455800 chr7A 94.203 69 4 0 643 711 664374387 664374319 3.100000e-19 106.0
17 TraesCS7D01G455800 chr7A 74.897 243 36 15 1887 2110 661295518 661295282 1.120000e-13 87.9
18 TraesCS7D01G455800 chr1B 78.806 335 58 13 1844 2172 471202663 471202990 1.780000e-51 213.0
19 TraesCS7D01G455800 chr1B 86.747 83 11 0 1865 1947 471202206 471202124 2.420000e-15 93.5
20 TraesCS7D01G455800 chrUn 81.176 255 36 8 1 252 51453644 51453889 6.440000e-46 195.0
21 TraesCS7D01G455800 chr3A 75.735 408 73 21 1773 2164 1522892 1522495 5.010000e-42 182.0
22 TraesCS7D01G455800 chr4A 79.842 253 32 14 1763 2000 49265843 49266091 1.400000e-37 167.0
23 TraesCS7D01G455800 chr4A 77.152 302 45 18 1775 2055 4249217 4249515 1.090000e-33 154.0
24 TraesCS7D01G455800 chr4A 77.876 226 35 7 1847 2059 4481700 4481923 2.380000e-25 126.0
25 TraesCS7D01G455800 chr4A 84.286 70 9 2 2098 2165 432491004 432491073 1.460000e-07 67.6
26 TraesCS7D01G455800 chr4D 75.658 304 46 16 1775 2055 466279746 466279448 2.380000e-25 126.0
27 TraesCS7D01G455800 chr6B 88.298 94 8 2 1957 2047 649928486 649928393 2.400000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G455800 chr7D 574762867 574765151 2284 True 4220.0 4220 100.0000 1 2285 1 chr7D.!!$R2 2284
1 TraesCS7D01G455800 chr7D 575441201 575442169 968 False 950.0 950 84.7460 574 1551 1 chr7D.!!$F2 977
2 TraesCS7D01G455800 chr7D 574773614 574776912 3298 True 808.5 1428 85.7475 1 1537 2 chr7D.!!$R3 1536
3 TraesCS7D01G455800 chr7D 575408164 575408902 738 False 643.0 643 82.8350 784 1532 1 chr7D.!!$F1 748
4 TraesCS7D01G455800 chr7B 634579079 634580530 1451 True 1581.0 1581 86.7390 266 1702 1 chr7B.!!$R1 1436
5 TraesCS7D01G455800 chr7B 636982935 636984235 1300 False 937.0 937 80.5220 9 1288 1 chr7B.!!$F2 1279
6 TraesCS7D01G455800 chr7B 634646729 634647961 1232 True 665.5 902 86.4925 378 1645 2 chr7B.!!$R2 1267
7 TraesCS7D01G455800 chr7B 636940033 636940674 641 False 649.0 649 85.0970 628 1288 1 chr7B.!!$F1 660
8 TraesCS7D01G455800 chr7A 664414304 664415345 1041 True 1219.0 1219 87.8250 619 1682 1 chr7A.!!$R2 1063
9 TraesCS7D01G455800 chr7A 664370665 664377970 7305 True 423.5 1256 90.4460 530 1934 4 chr7A.!!$R3 1404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.762418 TGGCCCACCATAGAATACCG 59.238 55.0 0.0 0.0 42.67 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 9339 0.03213 CGCACGGGCACATATCTAGT 59.968 55.0 11.77 0.0 41.24 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.762418 TGGCCCACCATAGAATACCG 59.238 55.000 0.00 0.00 42.67 4.02
29 32 3.495453 GCCCACCATAGAATACCGCTTTA 60.495 47.826 0.00 0.00 0.00 1.85
58 62 6.627287 GCATGTTAATTAGAACCCCAAAGTCC 60.627 42.308 0.00 0.00 0.00 3.85
72 76 1.507140 AAGTCCACCTCACACCAAGA 58.493 50.000 0.00 0.00 0.00 3.02
77 81 3.066760 GTCCACCTCACACCAAGAAAAAG 59.933 47.826 0.00 0.00 0.00 2.27
92 96 6.646653 CCAAGAAAAAGGAAGAATTTGTAGGC 59.353 38.462 0.00 0.00 0.00 3.93
96 100 4.388577 AAGGAAGAATTTGTAGGCCAGT 57.611 40.909 5.01 0.00 0.00 4.00
100 104 4.636206 GGAAGAATTTGTAGGCCAGTACAG 59.364 45.833 5.01 0.00 34.41 2.74
139 143 2.103042 CCGTCTTGTAGCTGCTGGC 61.103 63.158 13.43 5.76 42.19 4.85
193 202 9.605955 CAAACTGATTAATATTCACGACAAACA 57.394 29.630 0.00 0.00 0.00 2.83
197 206 9.773328 CTGATTAATATTCACGACAAACATGTT 57.227 29.630 4.92 4.92 0.00 2.71
209 218 5.755330 ACAAACATGTTTTGTCAACGTTC 57.245 34.783 21.10 0.00 38.10 3.95
210 219 5.223382 ACAAACATGTTTTGTCAACGTTCA 58.777 33.333 21.10 0.00 38.10 3.18
211 220 5.344665 ACAAACATGTTTTGTCAACGTTCAG 59.655 36.000 21.10 7.83 38.10 3.02
213 222 3.692101 ACATGTTTTGTCAACGTTCAGGA 59.308 39.130 0.00 0.00 30.89 3.86
221 230 2.801111 GTCAACGTTCAGGAAAGGACTC 59.199 50.000 0.00 0.00 0.00 3.36
225 234 2.288273 ACGTTCAGGAAAGGACTCTTCG 60.288 50.000 0.38 0.00 31.82 3.79
236 245 6.091034 GGAAAGGACTCTTCGTAATCTTCAAC 59.909 42.308 0.00 0.00 31.82 3.18
250 259 3.656559 TCTTCAACGGTGGTTAGTTAGC 58.343 45.455 0.00 0.00 33.72 3.09
256 265 4.748277 ACGGTGGTTAGTTAGCATACAT 57.252 40.909 0.00 0.00 36.50 2.29
257 266 4.439057 ACGGTGGTTAGTTAGCATACATG 58.561 43.478 0.00 0.00 36.50 3.21
259 268 5.163343 ACGGTGGTTAGTTAGCATACATGAT 60.163 40.000 0.00 0.00 36.50 2.45
260 269 5.405571 CGGTGGTTAGTTAGCATACATGATC 59.594 44.000 0.00 0.00 36.50 2.92
286 2055 5.717078 ATAATTGGATCATGGATGCACAC 57.283 39.130 0.00 0.00 39.92 3.82
301 2070 4.335082 TGCACACGCATATTTCAGTTAC 57.665 40.909 0.00 0.00 45.36 2.50
354 2156 3.193263 CTCAGTACATGTCACAGGATGC 58.807 50.000 0.00 0.00 42.53 3.91
442 2251 5.359756 TGCATGTCTAATTCGCACTCTAAT 58.640 37.500 0.00 0.00 0.00 1.73
443 2252 5.817296 TGCATGTCTAATTCGCACTCTAATT 59.183 36.000 0.00 0.00 0.00 1.40
447 2256 7.445900 TGTCTAATTCGCACTCTAATTAACG 57.554 36.000 0.00 0.00 29.62 3.18
448 2257 7.252708 TGTCTAATTCGCACTCTAATTAACGA 58.747 34.615 0.00 0.00 29.62 3.85
449 2258 7.756272 TGTCTAATTCGCACTCTAATTAACGAA 59.244 33.333 0.00 0.00 42.80 3.85
450 2259 8.049014 GTCTAATTCGCACTCTAATTAACGAAC 58.951 37.037 0.00 0.00 41.63 3.95
466 2282 3.116300 ACGAACATACATGCATCTCGAC 58.884 45.455 11.97 0.00 0.00 4.20
494 2312 8.992835 AGCATAAATTCTTCTTGTCAAATTCC 57.007 30.769 0.00 0.00 0.00 3.01
495 2313 8.587608 AGCATAAATTCTTCTTGTCAAATTCCA 58.412 29.630 0.00 0.00 0.00 3.53
567 2443 2.842394 CTAGCACACTGACCAGCCGG 62.842 65.000 0.00 0.00 38.77 6.13
702 6059 3.025322 ACATGTTTGAACCCAGTGGAA 57.975 42.857 11.95 0.00 34.81 3.53
706 6065 4.237976 TGTTTGAACCCAGTGGAAGTTA 57.762 40.909 11.95 0.00 34.81 2.24
746 8221 1.148310 CGCCACCACAGAACAGTAAG 58.852 55.000 0.00 0.00 0.00 2.34
748 8223 1.543429 GCCACCACAGAACAGTAAGCT 60.543 52.381 0.00 0.00 0.00 3.74
749 8224 2.289444 GCCACCACAGAACAGTAAGCTA 60.289 50.000 0.00 0.00 0.00 3.32
750 8225 3.805807 GCCACCACAGAACAGTAAGCTAA 60.806 47.826 0.00 0.00 0.00 3.09
751 8226 3.746492 CCACCACAGAACAGTAAGCTAAC 59.254 47.826 0.00 0.00 0.00 2.34
752 8227 3.746492 CACCACAGAACAGTAAGCTAACC 59.254 47.826 0.00 0.00 0.00 2.85
753 8228 3.389983 ACCACAGAACAGTAAGCTAACCA 59.610 43.478 0.00 0.00 0.00 3.67
754 8229 4.141574 ACCACAGAACAGTAAGCTAACCAA 60.142 41.667 0.00 0.00 0.00 3.67
755 8230 4.819630 CCACAGAACAGTAAGCTAACCAAA 59.180 41.667 0.00 0.00 0.00 3.28
756 8231 5.473504 CCACAGAACAGTAAGCTAACCAAAT 59.526 40.000 0.00 0.00 0.00 2.32
757 8232 6.016276 CCACAGAACAGTAAGCTAACCAAATT 60.016 38.462 0.00 0.00 0.00 1.82
758 8233 7.078228 CACAGAACAGTAAGCTAACCAAATTC 58.922 38.462 0.00 0.00 0.00 2.17
759 8234 6.206829 ACAGAACAGTAAGCTAACCAAATTCC 59.793 38.462 0.00 0.00 0.00 3.01
768 8243 5.029474 AGCTAACCAAATTCCTCTCTCTCT 58.971 41.667 0.00 0.00 0.00 3.10
769 8244 5.487131 AGCTAACCAAATTCCTCTCTCTCTT 59.513 40.000 0.00 0.00 0.00 2.85
770 8245 6.012945 AGCTAACCAAATTCCTCTCTCTCTTT 60.013 38.462 0.00 0.00 0.00 2.52
771 8246 6.315144 GCTAACCAAATTCCTCTCTCTCTTTC 59.685 42.308 0.00 0.00 0.00 2.62
772 8247 6.446909 AACCAAATTCCTCTCTCTCTTTCT 57.553 37.500 0.00 0.00 0.00 2.52
773 8248 7.560796 AACCAAATTCCTCTCTCTCTTTCTA 57.439 36.000 0.00 0.00 0.00 2.10
774 8249 6.941857 ACCAAATTCCTCTCTCTCTTTCTAC 58.058 40.000 0.00 0.00 0.00 2.59
775 8250 6.070481 ACCAAATTCCTCTCTCTCTTTCTACC 60.070 42.308 0.00 0.00 0.00 3.18
776 8251 6.345298 CAAATTCCTCTCTCTCTTTCTACCC 58.655 44.000 0.00 0.00 0.00 3.69
777 8252 3.284793 TCCTCTCTCTCTTTCTACCCG 57.715 52.381 0.00 0.00 0.00 5.28
778 8253 1.679153 CCTCTCTCTCTTTCTACCCGC 59.321 57.143 0.00 0.00 0.00 6.13
779 8254 1.679153 CTCTCTCTCTTTCTACCCGCC 59.321 57.143 0.00 0.00 0.00 6.13
780 8255 1.005569 TCTCTCTCTTTCTACCCGCCA 59.994 52.381 0.00 0.00 0.00 5.69
781 8256 1.135333 CTCTCTCTTTCTACCCGCCAC 59.865 57.143 0.00 0.00 0.00 5.01
782 8257 0.895530 CTCTCTTTCTACCCGCCACA 59.104 55.000 0.00 0.00 0.00 4.17
1353 8955 2.604914 CGATCGATTGACTTTCTGGGTG 59.395 50.000 10.26 0.00 0.00 4.61
1375 8977 0.251386 TGAGGAGCGACTCTCTGGTT 60.251 55.000 11.17 0.00 41.60 3.67
1494 9119 7.523542 CGCTTTTATAATGCGCATTGTAATTTG 59.476 33.333 36.74 29.99 45.70 2.32
1499 9124 0.913876 GCGCATTGTAATTTGCCGTC 59.086 50.000 0.30 0.00 35.41 4.79
1504 9129 2.172851 TTGTAATTTGCCGTCGGACT 57.827 45.000 17.49 0.00 0.00 3.85
1577 9206 8.802267 CATTTGTCCTTTCTAATCCTGGTTAAA 58.198 33.333 0.00 0.00 0.00 1.52
1581 9210 9.374711 TGTCCTTTCTAATCCTGGTTAAATTTT 57.625 29.630 0.00 0.00 0.00 1.82
1614 9244 6.788598 AAAATTTTGGTTCATTTTTGGGCT 57.211 29.167 1.75 0.00 29.98 5.19
1617 9249 7.888250 AATTTTGGTTCATTTTTGGGCTTTA 57.112 28.000 0.00 0.00 0.00 1.85
1624 9256 6.710295 GGTTCATTTTTGGGCTTTATTTCAGT 59.290 34.615 0.00 0.00 0.00 3.41
1627 9259 7.678837 TCATTTTTGGGCTTTATTTCAGTGAT 58.321 30.769 0.00 0.00 0.00 3.06
1651 9283 9.774742 GATTGAGAAATTAATTTAGTTGACGCT 57.225 29.630 13.34 4.11 0.00 5.07
1676 9308 2.328819 ACTTCTCATGATGCAGAGGC 57.671 50.000 0.00 0.00 41.68 4.70
1698 9330 4.624125 GCTGCGATATAAGCCCCTCTATTT 60.624 45.833 0.00 0.00 33.12 1.40
1699 9331 4.832248 TGCGATATAAGCCCCTCTATTTG 58.168 43.478 0.00 0.00 0.00 2.32
1701 9333 5.221843 TGCGATATAAGCCCCTCTATTTGTT 60.222 40.000 0.00 0.00 0.00 2.83
1702 9334 6.014070 TGCGATATAAGCCCCTCTATTTGTTA 60.014 38.462 0.00 0.00 0.00 2.41
1703 9335 6.877322 GCGATATAAGCCCCTCTATTTGTTAA 59.123 38.462 0.00 0.00 0.00 2.01
1704 9336 7.553044 GCGATATAAGCCCCTCTATTTGTTAAT 59.447 37.037 0.00 0.00 0.00 1.40
1712 9344 9.839185 AGCCCCTCTATTTGTTAATATACTAGA 57.161 33.333 0.00 0.00 0.00 2.43
1722 9354 9.647797 TTTGTTAATATACTAGATATGTGCCCG 57.352 33.333 0.00 0.00 0.00 6.13
1723 9355 8.357290 TGTTAATATACTAGATATGTGCCCGT 57.643 34.615 0.00 0.00 0.00 5.28
1724 9356 8.248253 TGTTAATATACTAGATATGTGCCCGTG 58.752 37.037 0.00 0.00 0.00 4.94
1725 9357 3.594603 ATACTAGATATGTGCCCGTGC 57.405 47.619 0.00 0.00 38.26 5.34
1726 9358 0.032130 ACTAGATATGTGCCCGTGCG 59.968 55.000 0.00 0.00 41.78 5.34
1742 9374 3.970721 CGCAGCCACATGAGTCAA 58.029 55.556 0.00 0.00 0.00 3.18
1743 9375 2.246841 CGCAGCCACATGAGTCAAA 58.753 52.632 0.00 0.00 0.00 2.69
1744 9376 0.806868 CGCAGCCACATGAGTCAAAT 59.193 50.000 0.00 0.00 0.00 2.32
1745 9377 2.009051 CGCAGCCACATGAGTCAAATA 58.991 47.619 0.00 0.00 0.00 1.40
1817 9773 9.515226 TGGTTGTAAAGTATAGATTTTTCAGCT 57.485 29.630 0.82 0.00 0.00 4.24
1856 9817 8.935614 ATGGATATATGCCCATGATTAATCTG 57.064 34.615 16.24 11.27 41.32 2.90
1860 9821 4.866508 ATGCCCATGATTAATCTGCTTG 57.133 40.909 16.24 8.60 0.00 4.01
1865 9826 5.779922 CCCATGATTAATCTGCTTGATTGG 58.220 41.667 16.24 9.50 44.40 3.16
1877 9838 3.518705 TGCTTGATTGGGTTGCCAAATAT 59.481 39.130 0.00 0.00 33.20 1.28
1924 9885 5.422145 ACTTCTTGGCCATCAATTTATTGC 58.578 37.500 6.09 0.00 37.68 3.56
1931 9892 9.715121 CTTGGCCATCAATTTATTGCTATTTAT 57.285 29.630 6.09 0.00 37.68 1.40
1933 9894 9.709495 TGGCCATCAATTTATTGCTATTTATTC 57.291 29.630 0.00 0.00 37.68 1.75
1934 9895 9.709495 GGCCATCAATTTATTGCTATTTATTCA 57.291 29.630 0.00 0.00 37.68 2.57
1953 9914 9.590451 TTTATTCAGTTACCAAAGATAGGTACG 57.410 33.333 0.00 0.00 41.13 3.67
1954 9915 6.839124 TTCAGTTACCAAAGATAGGTACGA 57.161 37.500 0.00 0.00 41.13 3.43
1955 9916 6.446781 TCAGTTACCAAAGATAGGTACGAG 57.553 41.667 0.00 0.00 41.13 4.18
1956 9917 5.359009 TCAGTTACCAAAGATAGGTACGAGG 59.641 44.000 0.00 0.00 41.13 4.63
1957 9918 5.126707 CAGTTACCAAAGATAGGTACGAGGT 59.873 44.000 0.00 0.00 41.13 3.85
1958 9919 5.718607 AGTTACCAAAGATAGGTACGAGGTT 59.281 40.000 0.00 0.00 41.13 3.50
1959 9920 6.212187 AGTTACCAAAGATAGGTACGAGGTTT 59.788 38.462 0.00 0.00 41.13 3.27
1960 9921 5.494390 ACCAAAGATAGGTACGAGGTTTT 57.506 39.130 0.00 0.00 37.67 2.43
1961 9922 6.610075 ACCAAAGATAGGTACGAGGTTTTA 57.390 37.500 0.00 0.00 37.67 1.52
1962 9923 7.191593 ACCAAAGATAGGTACGAGGTTTTAT 57.808 36.000 0.00 0.00 37.67 1.40
1963 9924 7.270779 ACCAAAGATAGGTACGAGGTTTTATC 58.729 38.462 0.00 0.00 37.67 1.75
1964 9925 7.093201 ACCAAAGATAGGTACGAGGTTTTATCA 60.093 37.037 0.00 0.00 37.67 2.15
1965 9926 7.931948 CCAAAGATAGGTACGAGGTTTTATCAT 59.068 37.037 0.00 0.00 0.00 2.45
1966 9927 9.976511 CAAAGATAGGTACGAGGTTTTATCATA 57.023 33.333 0.00 0.00 0.00 2.15
1969 9930 9.584008 AGATAGGTACGAGGTTTTATCATAAGA 57.416 33.333 0.00 0.00 0.00 2.10
1972 9933 8.713737 AGGTACGAGGTTTTATCATAAGAAAC 57.286 34.615 0.00 0.00 33.63 2.78
1973 9934 8.316214 AGGTACGAGGTTTTATCATAAGAAACA 58.684 33.333 0.00 0.00 35.53 2.83
1974 9935 8.938906 GGTACGAGGTTTTATCATAAGAAACAA 58.061 33.333 0.00 0.00 35.53 2.83
2006 9967 9.812347 TTATGGATCATGGATTTTTGCTATACT 57.188 29.630 0.00 0.00 0.00 2.12
2008 9969 9.986157 ATGGATCATGGATTTTTGCTATACTAT 57.014 29.630 0.00 0.00 0.00 2.12
2009 9970 9.812347 TGGATCATGGATTTTTGCTATACTATT 57.188 29.630 0.00 0.00 0.00 1.73
2057 10018 7.790823 CCAAAGATTGGTTTGATGAAAACTT 57.209 32.000 0.87 0.00 46.27 2.66
2058 10019 7.632721 CCAAAGATTGGTTTGATGAAAACTTG 58.367 34.615 0.87 0.00 46.27 3.16
2059 10020 7.495279 CCAAAGATTGGTTTGATGAAAACTTGA 59.505 33.333 0.87 0.00 46.27 3.02
2060 10021 8.881743 CAAAGATTGGTTTGATGAAAACTTGAA 58.118 29.630 0.00 0.00 46.27 2.69
2061 10022 8.652810 AAGATTGGTTTGATGAAAACTTGAAG 57.347 30.769 0.00 0.00 46.27 3.02
2062 10023 8.010733 AGATTGGTTTGATGAAAACTTGAAGA 57.989 30.769 0.00 0.00 46.27 2.87
2063 10024 8.139989 AGATTGGTTTGATGAAAACTTGAAGAG 58.860 33.333 0.00 0.00 46.27 2.85
2064 10025 6.147864 TGGTTTGATGAAAACTTGAAGAGG 57.852 37.500 0.00 0.00 46.27 3.69
2065 10026 5.890985 TGGTTTGATGAAAACTTGAAGAGGA 59.109 36.000 0.00 0.00 46.27 3.71
2066 10027 6.550854 TGGTTTGATGAAAACTTGAAGAGGAT 59.449 34.615 0.00 0.00 46.27 3.24
2067 10028 6.865205 GGTTTGATGAAAACTTGAAGAGGATG 59.135 38.462 0.00 0.00 46.27 3.51
2068 10029 7.255590 GGTTTGATGAAAACTTGAAGAGGATGA 60.256 37.037 0.00 0.00 46.27 2.92
2069 10030 7.822161 TTGATGAAAACTTGAAGAGGATGAA 57.178 32.000 0.00 0.00 0.00 2.57
2070 10031 7.822161 TGATGAAAACTTGAAGAGGATGAAA 57.178 32.000 0.00 0.00 0.00 2.69
2071 10032 7.651808 TGATGAAAACTTGAAGAGGATGAAAC 58.348 34.615 0.00 0.00 0.00 2.78
2072 10033 7.285172 TGATGAAAACTTGAAGAGGATGAAACA 59.715 33.333 0.00 0.00 0.00 2.83
2073 10034 6.795399 TGAAAACTTGAAGAGGATGAAACAC 58.205 36.000 0.00 0.00 0.00 3.32
2074 10035 5.424121 AAACTTGAAGAGGATGAAACACG 57.576 39.130 0.00 0.00 0.00 4.49
2075 10036 4.336889 ACTTGAAGAGGATGAAACACGA 57.663 40.909 0.00 0.00 0.00 4.35
2076 10037 4.310769 ACTTGAAGAGGATGAAACACGAG 58.689 43.478 0.00 0.00 0.00 4.18
2077 10038 3.319137 TGAAGAGGATGAAACACGAGG 57.681 47.619 0.00 0.00 0.00 4.63
2078 10039 2.897326 TGAAGAGGATGAAACACGAGGA 59.103 45.455 0.00 0.00 0.00 3.71
2079 10040 3.323691 TGAAGAGGATGAAACACGAGGAA 59.676 43.478 0.00 0.00 0.00 3.36
2080 10041 4.202315 TGAAGAGGATGAAACACGAGGAAA 60.202 41.667 0.00 0.00 0.00 3.13
2081 10042 4.351874 AGAGGATGAAACACGAGGAAAA 57.648 40.909 0.00 0.00 0.00 2.29
2082 10043 4.714632 AGAGGATGAAACACGAGGAAAAA 58.285 39.130 0.00 0.00 0.00 1.94
2083 10044 5.316987 AGAGGATGAAACACGAGGAAAAAT 58.683 37.500 0.00 0.00 0.00 1.82
2084 10045 5.412904 AGAGGATGAAACACGAGGAAAAATC 59.587 40.000 0.00 0.00 0.00 2.17
2085 10046 4.154195 AGGATGAAACACGAGGAAAAATCG 59.846 41.667 0.00 0.00 45.54 3.34
2086 10047 3.889196 TGAAACACGAGGAAAAATCGG 57.111 42.857 0.00 0.00 44.36 4.18
2087 10048 3.207778 TGAAACACGAGGAAAAATCGGT 58.792 40.909 0.00 0.00 44.36 4.69
2088 10049 3.002862 TGAAACACGAGGAAAAATCGGTG 59.997 43.478 0.00 0.00 44.36 4.94
2089 10050 1.519408 ACACGAGGAAAAATCGGTGG 58.481 50.000 0.00 0.00 44.36 4.61
2090 10051 1.071071 ACACGAGGAAAAATCGGTGGA 59.929 47.619 0.00 0.00 44.36 4.02
2091 10052 1.732259 CACGAGGAAAAATCGGTGGAG 59.268 52.381 0.00 0.00 44.36 3.86
2092 10053 1.346722 ACGAGGAAAAATCGGTGGAGT 59.653 47.619 0.00 0.00 44.36 3.85
2093 10054 1.732259 CGAGGAAAAATCGGTGGAGTG 59.268 52.381 0.00 0.00 36.54 3.51
2094 10055 2.084546 GAGGAAAAATCGGTGGAGTGG 58.915 52.381 0.00 0.00 0.00 4.00
2095 10056 1.702957 AGGAAAAATCGGTGGAGTGGA 59.297 47.619 0.00 0.00 0.00 4.02
2096 10057 1.810755 GGAAAAATCGGTGGAGTGGAC 59.189 52.381 0.00 0.00 0.00 4.02
2097 10058 1.463444 GAAAAATCGGTGGAGTGGACG 59.537 52.381 0.00 0.00 0.00 4.79
2098 10059 0.321298 AAAATCGGTGGAGTGGACGG 60.321 55.000 0.00 0.00 0.00 4.79
2099 10060 1.477685 AAATCGGTGGAGTGGACGGT 61.478 55.000 0.00 0.00 0.00 4.83
2100 10061 1.477685 AATCGGTGGAGTGGACGGTT 61.478 55.000 0.00 0.00 0.00 4.44
2101 10062 2.167398 ATCGGTGGAGTGGACGGTTG 62.167 60.000 0.00 0.00 0.00 3.77
2102 10063 2.032071 GGTGGAGTGGACGGTTGG 59.968 66.667 0.00 0.00 0.00 3.77
2103 10064 2.513259 GGTGGAGTGGACGGTTGGA 61.513 63.158 0.00 0.00 0.00 3.53
2104 10065 1.677552 GTGGAGTGGACGGTTGGAT 59.322 57.895 0.00 0.00 0.00 3.41
2105 10066 0.673644 GTGGAGTGGACGGTTGGATG 60.674 60.000 0.00 0.00 0.00 3.51
2106 10067 1.125093 TGGAGTGGACGGTTGGATGT 61.125 55.000 0.00 0.00 0.00 3.06
2107 10068 0.899720 GGAGTGGACGGTTGGATGTA 59.100 55.000 0.00 0.00 0.00 2.29
2108 10069 1.276989 GGAGTGGACGGTTGGATGTAA 59.723 52.381 0.00 0.00 0.00 2.41
2109 10070 2.289819 GGAGTGGACGGTTGGATGTAAA 60.290 50.000 0.00 0.00 0.00 2.01
2110 10071 3.000727 GAGTGGACGGTTGGATGTAAAG 58.999 50.000 0.00 0.00 0.00 1.85
2111 10072 2.081462 GTGGACGGTTGGATGTAAAGG 58.919 52.381 0.00 0.00 0.00 3.11
2112 10073 1.700739 TGGACGGTTGGATGTAAAGGT 59.299 47.619 0.00 0.00 0.00 3.50
2113 10074 2.081462 GGACGGTTGGATGTAAAGGTG 58.919 52.381 0.00 0.00 0.00 4.00
2114 10075 2.081462 GACGGTTGGATGTAAAGGTGG 58.919 52.381 0.00 0.00 0.00 4.61
2115 10076 1.422402 ACGGTTGGATGTAAAGGTGGT 59.578 47.619 0.00 0.00 0.00 4.16
2116 10077 1.810151 CGGTTGGATGTAAAGGTGGTG 59.190 52.381 0.00 0.00 0.00 4.17
2117 10078 2.167662 GGTTGGATGTAAAGGTGGTGG 58.832 52.381 0.00 0.00 0.00 4.61
2118 10079 2.167662 GTTGGATGTAAAGGTGGTGGG 58.832 52.381 0.00 0.00 0.00 4.61
2119 10080 1.748732 TGGATGTAAAGGTGGTGGGA 58.251 50.000 0.00 0.00 0.00 4.37
2120 10081 1.633432 TGGATGTAAAGGTGGTGGGAG 59.367 52.381 0.00 0.00 0.00 4.30
2121 10082 1.913419 GGATGTAAAGGTGGTGGGAGA 59.087 52.381 0.00 0.00 0.00 3.71
2122 10083 2.307686 GGATGTAAAGGTGGTGGGAGAA 59.692 50.000 0.00 0.00 0.00 2.87
2123 10084 3.245122 GGATGTAAAGGTGGTGGGAGAAA 60.245 47.826 0.00 0.00 0.00 2.52
2124 10085 3.955524 TGTAAAGGTGGTGGGAGAAAA 57.044 42.857 0.00 0.00 0.00 2.29
2125 10086 3.558033 TGTAAAGGTGGTGGGAGAAAAC 58.442 45.455 0.00 0.00 0.00 2.43
2126 10087 3.203487 TGTAAAGGTGGTGGGAGAAAACT 59.797 43.478 0.00 0.00 0.00 2.66
2127 10088 2.364972 AAGGTGGTGGGAGAAAACTG 57.635 50.000 0.00 0.00 0.00 3.16
2128 10089 1.518367 AGGTGGTGGGAGAAAACTGA 58.482 50.000 0.00 0.00 0.00 3.41
2129 10090 1.421646 AGGTGGTGGGAGAAAACTGAG 59.578 52.381 0.00 0.00 0.00 3.35
2130 10091 1.143073 GGTGGTGGGAGAAAACTGAGT 59.857 52.381 0.00 0.00 0.00 3.41
2131 10092 2.222027 GTGGTGGGAGAAAACTGAGTG 58.778 52.381 0.00 0.00 0.00 3.51
2132 10093 2.123589 TGGTGGGAGAAAACTGAGTGA 58.876 47.619 0.00 0.00 0.00 3.41
2133 10094 2.507886 TGGTGGGAGAAAACTGAGTGAA 59.492 45.455 0.00 0.00 0.00 3.18
2134 10095 3.053991 TGGTGGGAGAAAACTGAGTGAAA 60.054 43.478 0.00 0.00 0.00 2.69
2135 10096 3.565902 GGTGGGAGAAAACTGAGTGAAAG 59.434 47.826 0.00 0.00 0.00 2.62
2136 10097 4.451900 GTGGGAGAAAACTGAGTGAAAGA 58.548 43.478 0.00 0.00 0.00 2.52
2137 10098 5.066593 GTGGGAGAAAACTGAGTGAAAGAT 58.933 41.667 0.00 0.00 0.00 2.40
2138 10099 5.049129 GTGGGAGAAAACTGAGTGAAAGATG 60.049 44.000 0.00 0.00 0.00 2.90
2139 10100 5.163205 TGGGAGAAAACTGAGTGAAAGATGA 60.163 40.000 0.00 0.00 0.00 2.92
2140 10101 5.765182 GGGAGAAAACTGAGTGAAAGATGAA 59.235 40.000 0.00 0.00 0.00 2.57
2141 10102 6.263168 GGGAGAAAACTGAGTGAAAGATGAAA 59.737 38.462 0.00 0.00 0.00 2.69
2142 10103 7.040132 GGGAGAAAACTGAGTGAAAGATGAAAT 60.040 37.037 0.00 0.00 0.00 2.17
2143 10104 8.020244 GGAGAAAACTGAGTGAAAGATGAAATC 58.980 37.037 0.00 0.00 46.04 2.17
2200 10161 3.830744 CATGTTCATTTCCATGCCCAT 57.169 42.857 0.00 0.00 32.80 4.00
2201 10162 3.462982 CATGTTCATTTCCATGCCCATG 58.537 45.455 1.28 1.28 34.57 3.66
2230 10191 7.380423 TTTTTGAGGGTTATTTTCATGGGAA 57.620 32.000 0.00 0.00 0.00 3.97
2231 10192 6.603940 TTTGAGGGTTATTTTCATGGGAAG 57.396 37.500 0.00 0.00 33.82 3.46
2232 10193 4.023291 TGAGGGTTATTTTCATGGGAAGC 58.977 43.478 0.00 0.00 33.82 3.86
2233 10194 3.374764 AGGGTTATTTTCATGGGAAGCC 58.625 45.455 0.00 0.00 37.83 4.35
2234 10195 3.103742 GGGTTATTTTCATGGGAAGCCA 58.896 45.455 0.00 0.00 37.56 4.75
2235 10196 3.711190 GGGTTATTTTCATGGGAAGCCAT 59.289 43.478 0.00 0.00 37.56 4.40
2236 10197 4.898861 GGGTTATTTTCATGGGAAGCCATA 59.101 41.667 0.00 0.00 37.56 2.74
2237 10198 5.543790 GGGTTATTTTCATGGGAAGCCATAT 59.456 40.000 0.00 0.00 37.56 1.78
2238 10199 6.043127 GGGTTATTTTCATGGGAAGCCATATT 59.957 38.462 0.00 0.00 37.56 1.28
2239 10200 7.420097 GGGTTATTTTCATGGGAAGCCATATTT 60.420 37.037 0.00 0.00 37.56 1.40
2240 10201 7.992608 GGTTATTTTCATGGGAAGCCATATTTT 59.007 33.333 0.00 0.00 33.82 1.82
2243 10204 5.789643 TTCATGGGAAGCCATATTTTAGC 57.210 39.130 0.00 0.00 0.00 3.09
2244 10205 4.151883 TCATGGGAAGCCATATTTTAGCC 58.848 43.478 0.00 0.00 0.00 3.93
2245 10206 3.678965 TGGGAAGCCATATTTTAGCCA 57.321 42.857 0.00 0.00 0.00 4.75
2246 10207 3.987745 TGGGAAGCCATATTTTAGCCAA 58.012 40.909 0.00 0.00 0.00 4.52
2247 10208 3.960102 TGGGAAGCCATATTTTAGCCAAG 59.040 43.478 0.00 0.00 0.00 3.61
2248 10209 3.960755 GGGAAGCCATATTTTAGCCAAGT 59.039 43.478 0.00 0.00 0.00 3.16
2249 10210 4.038042 GGGAAGCCATATTTTAGCCAAGTC 59.962 45.833 0.00 0.00 0.00 3.01
2250 10211 4.038042 GGAAGCCATATTTTAGCCAAGTCC 59.962 45.833 0.00 0.00 0.00 3.85
2251 10212 3.214328 AGCCATATTTTAGCCAAGTCCG 58.786 45.455 0.00 0.00 0.00 4.79
2252 10213 3.118038 AGCCATATTTTAGCCAAGTCCGA 60.118 43.478 0.00 0.00 0.00 4.55
2253 10214 3.251004 GCCATATTTTAGCCAAGTCCGAG 59.749 47.826 0.00 0.00 0.00 4.63
2254 10215 3.251004 CCATATTTTAGCCAAGTCCGAGC 59.749 47.826 0.00 0.00 0.00 5.03
2255 10216 1.751437 ATTTTAGCCAAGTCCGAGCC 58.249 50.000 0.00 0.00 0.00 4.70
2256 10217 0.690762 TTTTAGCCAAGTCCGAGCCT 59.309 50.000 0.00 0.00 0.00 4.58
2257 10218 0.690762 TTTAGCCAAGTCCGAGCCTT 59.309 50.000 0.00 0.00 0.00 4.35
2258 10219 1.563924 TTAGCCAAGTCCGAGCCTTA 58.436 50.000 0.00 0.00 0.00 2.69
2259 10220 0.822164 TAGCCAAGTCCGAGCCTTAC 59.178 55.000 0.00 0.00 0.00 2.34
2260 10221 1.810030 GCCAAGTCCGAGCCTTACG 60.810 63.158 0.00 0.00 0.00 3.18
2261 10222 1.888018 CCAAGTCCGAGCCTTACGA 59.112 57.895 0.00 0.00 0.00 3.43
2262 10223 0.179134 CCAAGTCCGAGCCTTACGAG 60.179 60.000 0.00 0.00 0.00 4.18
2263 10224 0.809385 CAAGTCCGAGCCTTACGAGA 59.191 55.000 0.00 0.00 0.00 4.04
2264 10225 1.201647 CAAGTCCGAGCCTTACGAGAA 59.798 52.381 0.00 0.00 0.00 2.87
2265 10226 0.810016 AGTCCGAGCCTTACGAGAAC 59.190 55.000 0.00 0.00 0.00 3.01
2266 10227 0.524862 GTCCGAGCCTTACGAGAACA 59.475 55.000 0.00 0.00 0.00 3.18
2267 10228 0.524862 TCCGAGCCTTACGAGAACAC 59.475 55.000 0.00 0.00 0.00 3.32
2268 10229 0.458025 CCGAGCCTTACGAGAACACC 60.458 60.000 0.00 0.00 0.00 4.16
2269 10230 0.458025 CGAGCCTTACGAGAACACCC 60.458 60.000 0.00 0.00 0.00 4.61
2270 10231 0.108281 GAGCCTTACGAGAACACCCC 60.108 60.000 0.00 0.00 0.00 4.95
2271 10232 0.544595 AGCCTTACGAGAACACCCCT 60.545 55.000 0.00 0.00 0.00 4.79
2272 10233 0.391263 GCCTTACGAGAACACCCCTG 60.391 60.000 0.00 0.00 0.00 4.45
2273 10234 1.263356 CCTTACGAGAACACCCCTGA 58.737 55.000 0.00 0.00 0.00 3.86
2274 10235 1.831736 CCTTACGAGAACACCCCTGAT 59.168 52.381 0.00 0.00 0.00 2.90
2275 10236 2.418746 CCTTACGAGAACACCCCTGATG 60.419 54.545 0.00 0.00 0.00 3.07
2276 10237 2.225382 TACGAGAACACCCCTGATGA 57.775 50.000 0.00 0.00 0.00 2.92
2277 10238 1.348064 ACGAGAACACCCCTGATGAA 58.652 50.000 0.00 0.00 0.00 2.57
2278 10239 1.697432 ACGAGAACACCCCTGATGAAA 59.303 47.619 0.00 0.00 0.00 2.69
2279 10240 2.105821 ACGAGAACACCCCTGATGAAAA 59.894 45.455 0.00 0.00 0.00 2.29
2280 10241 3.244911 ACGAGAACACCCCTGATGAAAAT 60.245 43.478 0.00 0.00 0.00 1.82
2281 10242 4.019681 ACGAGAACACCCCTGATGAAAATA 60.020 41.667 0.00 0.00 0.00 1.40
2282 10243 4.941263 CGAGAACACCCCTGATGAAAATAA 59.059 41.667 0.00 0.00 0.00 1.40
2283 10244 5.414454 CGAGAACACCCCTGATGAAAATAAA 59.586 40.000 0.00 0.00 0.00 1.40
2284 10245 6.072175 CGAGAACACCCCTGATGAAAATAAAA 60.072 38.462 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.605589 GCGGTATTCTATGGTGGGCC 60.606 60.000 0.00 0.00 0.00 5.80
15 16 5.364778 ACATGCATGTAAAGCGGTATTCTA 58.635 37.500 30.50 0.00 39.68 2.10
24 25 7.435192 GGGTTCTAATTAACATGCATGTAAAGC 59.565 37.037 31.55 21.87 40.80 3.51
29 32 5.268387 TGGGGTTCTAATTAACATGCATGT 58.732 37.500 26.61 26.61 44.20 3.21
58 62 3.287222 TCCTTTTTCTTGGTGTGAGGTG 58.713 45.455 0.00 0.00 0.00 4.00
72 76 5.602561 ACTGGCCTACAAATTCTTCCTTTTT 59.397 36.000 3.32 0.00 0.00 1.94
77 81 4.585879 TGTACTGGCCTACAAATTCTTCC 58.414 43.478 3.32 0.00 0.00 3.46
92 96 6.748658 CACATGCATTTATGTTTCTGTACTGG 59.251 38.462 0.00 0.00 39.17 4.00
96 100 5.649557 GCCACATGCATTTATGTTTCTGTA 58.350 37.500 0.00 0.00 39.17 2.74
139 143 2.202703 AAACCTAGCTACCGCGCG 60.203 61.111 25.67 25.67 42.32 6.86
140 144 0.529992 ATCAAACCTAGCTACCGCGC 60.530 55.000 0.00 0.00 42.32 6.86
141 145 1.859080 GAATCAAACCTAGCTACCGCG 59.141 52.381 0.00 0.00 42.32 6.46
142 146 2.901249 TGAATCAAACCTAGCTACCGC 58.099 47.619 0.00 0.00 0.00 5.68
143 147 6.093495 TGAAATTGAATCAAACCTAGCTACCG 59.907 38.462 0.00 0.00 0.00 4.02
189 198 4.862018 CCTGAACGTTGACAAAACATGTTT 59.138 37.500 18.13 18.13 44.12 2.83
193 202 4.974368 TTCCTGAACGTTGACAAAACAT 57.026 36.364 5.00 0.00 0.00 2.71
197 206 3.375922 GTCCTTTCCTGAACGTTGACAAA 59.624 43.478 5.00 0.00 0.00 2.83
204 213 2.288273 CGAAGAGTCCTTTCCTGAACGT 60.288 50.000 0.00 0.00 31.62 3.99
208 217 5.017490 AGATTACGAAGAGTCCTTTCCTGA 58.983 41.667 0.00 0.00 31.62 3.86
209 218 5.331876 AGATTACGAAGAGTCCTTTCCTG 57.668 43.478 0.00 0.00 31.62 3.86
210 219 5.480772 TGAAGATTACGAAGAGTCCTTTCCT 59.519 40.000 0.00 0.00 31.62 3.36
211 220 5.721232 TGAAGATTACGAAGAGTCCTTTCC 58.279 41.667 0.00 0.00 31.62 3.13
213 222 5.634020 CGTTGAAGATTACGAAGAGTCCTTT 59.366 40.000 0.00 0.00 40.03 3.11
221 230 3.323243 ACCACCGTTGAAGATTACGAAG 58.677 45.455 0.00 0.00 40.03 3.79
225 234 6.183360 GCTAACTAACCACCGTTGAAGATTAC 60.183 42.308 0.00 0.00 33.17 1.89
236 245 4.689071 TCATGTATGCTAACTAACCACCG 58.311 43.478 0.00 0.00 0.00 4.94
256 265 9.788889 GCATCCATGATCCAATTATATAGATCA 57.211 33.333 12.34 12.34 46.59 2.92
257 266 9.788889 TGCATCCATGATCCAATTATATAGATC 57.211 33.333 0.00 3.76 36.49 2.75
259 268 8.550585 TGTGCATCCATGATCCAATTATATAGA 58.449 33.333 0.00 0.00 0.00 1.98
260 269 8.618677 GTGTGCATCCATGATCCAATTATATAG 58.381 37.037 0.00 0.00 0.00 1.31
286 2055 2.614212 CGCGTGTAACTGAAATATGCG 58.386 47.619 0.00 0.00 36.96 4.73
442 2251 5.231357 GTCGAGATGCATGTATGTTCGTTAA 59.769 40.000 19.48 5.61 0.00 2.01
443 2252 4.738252 GTCGAGATGCATGTATGTTCGTTA 59.262 41.667 19.48 6.12 0.00 3.18
447 2256 3.372060 TCGTCGAGATGCATGTATGTTC 58.628 45.455 2.46 0.00 0.00 3.18
448 2257 3.436700 TCGTCGAGATGCATGTATGTT 57.563 42.857 2.46 0.00 0.00 2.71
449 2258 3.375642 CTTCGTCGAGATGCATGTATGT 58.624 45.455 2.46 0.00 0.00 2.29
450 2259 2.154580 GCTTCGTCGAGATGCATGTATG 59.845 50.000 2.46 0.00 45.93 2.39
466 2282 8.679288 ATTTGACAAGAAGAATTTATGCTTCG 57.321 30.769 5.08 0.00 43.94 3.79
702 6059 1.125711 AGTCGTGGCTGGGGTTAACT 61.126 55.000 5.42 0.00 0.00 2.24
706 6065 4.643387 GCAGTCGTGGCTGGGGTT 62.643 66.667 3.35 0.00 37.00 4.11
746 8221 5.351948 AGAGAGAGAGGAATTTGGTTAGC 57.648 43.478 0.00 0.00 0.00 3.09
748 8223 7.560796 AGAAAGAGAGAGAGGAATTTGGTTA 57.439 36.000 0.00 0.00 0.00 2.85
749 8224 6.446909 AGAAAGAGAGAGAGGAATTTGGTT 57.553 37.500 0.00 0.00 0.00 3.67
750 8225 6.070481 GGTAGAAAGAGAGAGAGGAATTTGGT 60.070 42.308 0.00 0.00 0.00 3.67
751 8226 6.345298 GGTAGAAAGAGAGAGAGGAATTTGG 58.655 44.000 0.00 0.00 0.00 3.28
752 8227 6.345298 GGGTAGAAAGAGAGAGAGGAATTTG 58.655 44.000 0.00 0.00 0.00 2.32
753 8228 5.128008 CGGGTAGAAAGAGAGAGAGGAATTT 59.872 44.000 0.00 0.00 0.00 1.82
754 8229 4.647399 CGGGTAGAAAGAGAGAGAGGAATT 59.353 45.833 0.00 0.00 0.00 2.17
755 8230 4.211920 CGGGTAGAAAGAGAGAGAGGAAT 58.788 47.826 0.00 0.00 0.00 3.01
756 8231 3.622630 CGGGTAGAAAGAGAGAGAGGAA 58.377 50.000 0.00 0.00 0.00 3.36
757 8232 2.684334 GCGGGTAGAAAGAGAGAGAGGA 60.684 54.545 0.00 0.00 0.00 3.71
758 8233 1.679153 GCGGGTAGAAAGAGAGAGAGG 59.321 57.143 0.00 0.00 0.00 3.69
759 8234 1.679153 GGCGGGTAGAAAGAGAGAGAG 59.321 57.143 0.00 0.00 0.00 3.20
768 8243 1.480954 GAGAGATGTGGCGGGTAGAAA 59.519 52.381 0.00 0.00 0.00 2.52
769 8244 1.112113 GAGAGATGTGGCGGGTAGAA 58.888 55.000 0.00 0.00 0.00 2.10
770 8245 0.259065 AGAGAGATGTGGCGGGTAGA 59.741 55.000 0.00 0.00 0.00 2.59
771 8246 0.671251 GAGAGAGATGTGGCGGGTAG 59.329 60.000 0.00 0.00 0.00 3.18
772 8247 0.259065 AGAGAGAGATGTGGCGGGTA 59.741 55.000 0.00 0.00 0.00 3.69
773 8248 1.000993 AGAGAGAGATGTGGCGGGT 59.999 57.895 0.00 0.00 0.00 5.28
774 8249 0.754957 AGAGAGAGAGATGTGGCGGG 60.755 60.000 0.00 0.00 0.00 6.13
775 8250 0.667993 GAGAGAGAGAGATGTGGCGG 59.332 60.000 0.00 0.00 0.00 6.13
776 8251 1.603802 GAGAGAGAGAGAGATGTGGCG 59.396 57.143 0.00 0.00 0.00 5.69
777 8252 2.880890 GAGAGAGAGAGAGAGATGTGGC 59.119 54.545 0.00 0.00 0.00 5.01
778 8253 4.141642 TGAGAGAGAGAGAGAGAGATGTGG 60.142 50.000 0.00 0.00 0.00 4.17
779 8254 4.813161 GTGAGAGAGAGAGAGAGAGATGTG 59.187 50.000 0.00 0.00 0.00 3.21
780 8255 4.141620 GGTGAGAGAGAGAGAGAGAGATGT 60.142 50.000 0.00 0.00 0.00 3.06
781 8256 4.141642 TGGTGAGAGAGAGAGAGAGAGATG 60.142 50.000 0.00 0.00 0.00 2.90
782 8257 4.040047 TGGTGAGAGAGAGAGAGAGAGAT 58.960 47.826 0.00 0.00 0.00 2.75
816 8383 5.163488 TGGAATGTTTGATTGGATCATGAGC 60.163 40.000 1.26 1.26 39.39 4.26
865 8432 1.974265 TTGTGATTCTTGGCGTTGGA 58.026 45.000 0.00 0.00 0.00 3.53
1265 8860 5.944599 AGTAATCAGTAGTTCTTGGAGACGA 59.055 40.000 0.00 0.00 0.00 4.20
1366 8968 4.764823 AGACTAGTCAACAGAACCAGAGAG 59.235 45.833 24.44 0.00 0.00 3.20
1375 8977 1.813178 CGCAGGAGACTAGTCAACAGA 59.187 52.381 24.44 0.00 40.21 3.41
1494 9119 2.126031 GACAGGAAGTCCGACGGC 60.126 66.667 9.66 4.47 41.56 5.68
1595 9224 7.888250 AATAAAGCCCAAAAATGAACCAAAA 57.112 28.000 0.00 0.00 0.00 2.44
1597 9226 7.056635 TGAAATAAAGCCCAAAAATGAACCAA 58.943 30.769 0.00 0.00 0.00 3.67
1624 9256 9.554724 GCGTCAACTAAATTAATTTCTCAATCA 57.445 29.630 16.56 0.00 0.00 2.57
1627 9259 9.393249 CAAGCGTCAACTAAATTAATTTCTCAA 57.607 29.630 16.56 0.00 0.00 3.02
1645 9277 4.627058 TCATGAGAAGTAAACAAGCGTCA 58.373 39.130 0.00 0.00 0.00 4.35
1651 9283 5.645067 CCTCTGCATCATGAGAAGTAAACAA 59.355 40.000 0.09 0.00 32.44 2.83
1676 9308 4.744795 AATAGAGGGGCTTATATCGCAG 57.255 45.455 0.14 0.00 0.00 5.18
1698 9330 8.248253 CACGGGCACATATCTAGTATATTAACA 58.752 37.037 0.00 0.00 0.00 2.41
1699 9331 7.222224 GCACGGGCACATATCTAGTATATTAAC 59.778 40.741 3.77 0.00 40.72 2.01
1701 9333 6.459161 CGCACGGGCACATATCTAGTATATTA 60.459 42.308 11.77 0.00 41.24 0.98
1702 9334 5.661458 GCACGGGCACATATCTAGTATATT 58.339 41.667 3.77 0.00 40.72 1.28
1703 9335 4.202020 CGCACGGGCACATATCTAGTATAT 60.202 45.833 11.77 0.00 41.24 0.86
1704 9336 3.128068 CGCACGGGCACATATCTAGTATA 59.872 47.826 11.77 0.00 41.24 1.47
1705 9337 2.094700 CGCACGGGCACATATCTAGTAT 60.095 50.000 11.77 0.00 41.24 2.12
1706 9338 1.268625 CGCACGGGCACATATCTAGTA 59.731 52.381 11.77 0.00 41.24 1.82
1707 9339 0.032130 CGCACGGGCACATATCTAGT 59.968 55.000 11.77 0.00 41.24 2.57
1708 9340 1.284982 GCGCACGGGCACATATCTAG 61.285 60.000 11.77 0.00 41.24 2.43
1709 9341 1.300620 GCGCACGGGCACATATCTA 60.301 57.895 11.77 0.00 41.24 1.98
1710 9342 2.588877 GCGCACGGGCACATATCT 60.589 61.111 11.77 0.00 41.24 1.98
1711 9343 2.885676 CTGCGCACGGGCACATATC 61.886 63.158 11.77 0.00 41.24 1.63
1712 9344 2.896854 CTGCGCACGGGCACATAT 60.897 61.111 11.77 0.00 41.24 1.78
1721 9353 4.156622 CTCATGTGGCTGCGCACG 62.157 66.667 5.66 3.93 0.00 5.34
1722 9354 3.031964 GACTCATGTGGCTGCGCAC 62.032 63.158 5.66 3.30 0.00 5.34
1723 9355 2.743538 GACTCATGTGGCTGCGCA 60.744 61.111 10.98 10.98 0.00 6.09
1724 9356 1.855213 TTTGACTCATGTGGCTGCGC 61.855 55.000 0.00 0.00 0.00 6.09
1725 9357 0.806868 ATTTGACTCATGTGGCTGCG 59.193 50.000 1.72 0.00 0.00 5.18
1726 9358 4.644103 AATATTTGACTCATGTGGCTGC 57.356 40.909 1.72 0.00 0.00 5.25
1834 9790 8.350722 CAAGCAGATTAATCATGGGCATATATC 58.649 37.037 17.56 0.00 0.00 1.63
1843 9804 5.303589 ACCCAATCAAGCAGATTAATCATGG 59.696 40.000 17.56 7.66 45.06 3.66
1844 9805 6.401047 ACCCAATCAAGCAGATTAATCATG 57.599 37.500 17.56 12.81 45.06 3.07
1855 9816 2.831859 TTGGCAACCCAATCAAGCA 58.168 47.368 0.00 0.00 46.01 3.91
1865 9826 8.632679 TCAATCAATCTCTTATATTTGGCAACC 58.367 33.333 0.00 0.00 0.00 3.77
1908 9869 9.709495 TGAATAAATAGCAATAAATTGATGGCC 57.291 29.630 6.87 0.00 40.14 5.36
1931 9892 6.127535 CCTCGTACCTATCTTTGGTAACTGAA 60.128 42.308 0.00 0.00 41.16 3.02
1933 9894 5.126707 ACCTCGTACCTATCTTTGGTAACTG 59.873 44.000 0.00 0.00 41.16 3.16
1934 9895 5.267587 ACCTCGTACCTATCTTTGGTAACT 58.732 41.667 0.00 0.00 41.16 2.24
1935 9896 5.588958 ACCTCGTACCTATCTTTGGTAAC 57.411 43.478 0.00 0.00 41.16 2.50
1936 9897 6.610075 AAACCTCGTACCTATCTTTGGTAA 57.390 37.500 0.00 0.00 41.16 2.85
1937 9898 6.610075 AAAACCTCGTACCTATCTTTGGTA 57.390 37.500 0.00 0.00 38.88 3.25
1938 9899 5.494390 AAAACCTCGTACCTATCTTTGGT 57.506 39.130 0.00 0.00 41.28 3.67
1939 9900 7.270047 TGATAAAACCTCGTACCTATCTTTGG 58.730 38.462 0.00 0.00 0.00 3.28
1940 9901 8.888579 ATGATAAAACCTCGTACCTATCTTTG 57.111 34.615 0.00 0.00 0.00 2.77
1943 9904 9.584008 TCTTATGATAAAACCTCGTACCTATCT 57.416 33.333 0.00 0.00 0.00 1.98
1946 9907 9.807649 GTTTCTTATGATAAAACCTCGTACCTA 57.192 33.333 0.00 0.00 0.00 3.08
1947 9908 8.316214 TGTTTCTTATGATAAAACCTCGTACCT 58.684 33.333 0.00 0.00 33.06 3.08
1948 9909 8.483307 TGTTTCTTATGATAAAACCTCGTACC 57.517 34.615 0.00 0.00 33.06 3.34
1980 9941 9.812347 AGTATAGCAAAAATCCATGATCCATAA 57.188 29.630 0.00 0.00 0.00 1.90
1982 9943 9.986157 ATAGTATAGCAAAAATCCATGATCCAT 57.014 29.630 0.00 0.00 0.00 3.41
1983 9944 9.812347 AATAGTATAGCAAAAATCCATGATCCA 57.188 29.630 0.00 0.00 0.00 3.41
2034 9995 8.422973 TCAAGTTTTCATCAAACCAATCTTTG 57.577 30.769 0.00 0.00 45.42 2.77
2035 9996 9.101655 CTTCAAGTTTTCATCAAACCAATCTTT 57.898 29.630 0.00 0.00 45.42 2.52
2036 9997 8.477256 TCTTCAAGTTTTCATCAAACCAATCTT 58.523 29.630 0.00 0.00 45.42 2.40
2037 9998 8.010733 TCTTCAAGTTTTCATCAAACCAATCT 57.989 30.769 0.00 0.00 45.42 2.40
2038 9999 7.383300 CCTCTTCAAGTTTTCATCAAACCAATC 59.617 37.037 0.00 0.00 45.42 2.67
2039 10000 7.069826 TCCTCTTCAAGTTTTCATCAAACCAAT 59.930 33.333 0.00 0.00 45.42 3.16
2040 10001 6.379703 TCCTCTTCAAGTTTTCATCAAACCAA 59.620 34.615 0.00 0.00 45.42 3.67
2041 10002 5.890985 TCCTCTTCAAGTTTTCATCAAACCA 59.109 36.000 0.00 0.00 45.42 3.67
2042 10003 6.391227 TCCTCTTCAAGTTTTCATCAAACC 57.609 37.500 0.00 0.00 45.42 3.27
2043 10004 7.651808 TCATCCTCTTCAAGTTTTCATCAAAC 58.348 34.615 0.00 0.00 44.73 2.93
2044 10005 7.822161 TCATCCTCTTCAAGTTTTCATCAAA 57.178 32.000 0.00 0.00 0.00 2.69
2045 10006 7.822161 TTCATCCTCTTCAAGTTTTCATCAA 57.178 32.000 0.00 0.00 0.00 2.57
2046 10007 7.285172 TGTTTCATCCTCTTCAAGTTTTCATCA 59.715 33.333 0.00 0.00 0.00 3.07
2047 10008 7.592903 GTGTTTCATCCTCTTCAAGTTTTCATC 59.407 37.037 0.00 0.00 0.00 2.92
2048 10009 7.428826 GTGTTTCATCCTCTTCAAGTTTTCAT 58.571 34.615 0.00 0.00 0.00 2.57
2049 10010 6.458206 CGTGTTTCATCCTCTTCAAGTTTTCA 60.458 38.462 0.00 0.00 0.00 2.69
2050 10011 5.909610 CGTGTTTCATCCTCTTCAAGTTTTC 59.090 40.000 0.00 0.00 0.00 2.29
2051 10012 5.588648 TCGTGTTTCATCCTCTTCAAGTTTT 59.411 36.000 0.00 0.00 0.00 2.43
2052 10013 5.123227 TCGTGTTTCATCCTCTTCAAGTTT 58.877 37.500 0.00 0.00 0.00 2.66
2053 10014 4.703897 TCGTGTTTCATCCTCTTCAAGTT 58.296 39.130 0.00 0.00 0.00 2.66
2054 10015 4.310769 CTCGTGTTTCATCCTCTTCAAGT 58.689 43.478 0.00 0.00 0.00 3.16
2055 10016 3.681897 CCTCGTGTTTCATCCTCTTCAAG 59.318 47.826 0.00 0.00 0.00 3.02
2056 10017 3.323691 TCCTCGTGTTTCATCCTCTTCAA 59.676 43.478 0.00 0.00 0.00 2.69
2057 10018 2.897326 TCCTCGTGTTTCATCCTCTTCA 59.103 45.455 0.00 0.00 0.00 3.02
2058 10019 3.594603 TCCTCGTGTTTCATCCTCTTC 57.405 47.619 0.00 0.00 0.00 2.87
2059 10020 4.351874 TTTCCTCGTGTTTCATCCTCTT 57.648 40.909 0.00 0.00 0.00 2.85
2060 10021 4.351874 TTTTCCTCGTGTTTCATCCTCT 57.648 40.909 0.00 0.00 0.00 3.69
2061 10022 5.629079 ATTTTTCCTCGTGTTTCATCCTC 57.371 39.130 0.00 0.00 0.00 3.71
2062 10023 4.154195 CGATTTTTCCTCGTGTTTCATCCT 59.846 41.667 0.00 0.00 0.00 3.24
2063 10024 4.403453 CGATTTTTCCTCGTGTTTCATCC 58.597 43.478 0.00 0.00 0.00 3.51
2064 10025 4.083484 ACCGATTTTTCCTCGTGTTTCATC 60.083 41.667 0.00 0.00 34.36 2.92
2065 10026 3.818773 ACCGATTTTTCCTCGTGTTTCAT 59.181 39.130 0.00 0.00 34.36 2.57
2066 10027 3.002862 CACCGATTTTTCCTCGTGTTTCA 59.997 43.478 0.00 0.00 34.36 2.69
2067 10028 3.551551 CACCGATTTTTCCTCGTGTTTC 58.448 45.455 0.00 0.00 34.36 2.78
2068 10029 2.292292 CCACCGATTTTTCCTCGTGTTT 59.708 45.455 0.00 0.00 34.36 2.83
2069 10030 1.877443 CCACCGATTTTTCCTCGTGTT 59.123 47.619 0.00 0.00 34.36 3.32
2070 10031 1.071071 TCCACCGATTTTTCCTCGTGT 59.929 47.619 0.00 0.00 34.36 4.49
2071 10032 1.732259 CTCCACCGATTTTTCCTCGTG 59.268 52.381 0.00 0.00 34.36 4.35
2072 10033 1.346722 ACTCCACCGATTTTTCCTCGT 59.653 47.619 0.00 0.00 34.36 4.18
2073 10034 1.732259 CACTCCACCGATTTTTCCTCG 59.268 52.381 0.00 0.00 35.92 4.63
2074 10035 2.084546 CCACTCCACCGATTTTTCCTC 58.915 52.381 0.00 0.00 0.00 3.71
2075 10036 1.702957 TCCACTCCACCGATTTTTCCT 59.297 47.619 0.00 0.00 0.00 3.36
2076 10037 1.810755 GTCCACTCCACCGATTTTTCC 59.189 52.381 0.00 0.00 0.00 3.13
2077 10038 1.463444 CGTCCACTCCACCGATTTTTC 59.537 52.381 0.00 0.00 0.00 2.29
2078 10039 1.519408 CGTCCACTCCACCGATTTTT 58.481 50.000 0.00 0.00 0.00 1.94
2079 10040 0.321298 CCGTCCACTCCACCGATTTT 60.321 55.000 0.00 0.00 0.00 1.82
2080 10041 1.295423 CCGTCCACTCCACCGATTT 59.705 57.895 0.00 0.00 0.00 2.17
2081 10042 1.477685 AACCGTCCACTCCACCGATT 61.478 55.000 0.00 0.00 0.00 3.34
2082 10043 1.911766 AACCGTCCACTCCACCGAT 60.912 57.895 0.00 0.00 0.00 4.18
2083 10044 2.522436 AACCGTCCACTCCACCGA 60.522 61.111 0.00 0.00 0.00 4.69
2084 10045 2.357034 CAACCGTCCACTCCACCG 60.357 66.667 0.00 0.00 0.00 4.94
2085 10046 1.838073 ATCCAACCGTCCACTCCACC 61.838 60.000 0.00 0.00 0.00 4.61
2086 10047 0.673644 CATCCAACCGTCCACTCCAC 60.674 60.000 0.00 0.00 0.00 4.02
2087 10048 1.125093 ACATCCAACCGTCCACTCCA 61.125 55.000 0.00 0.00 0.00 3.86
2088 10049 0.899720 TACATCCAACCGTCCACTCC 59.100 55.000 0.00 0.00 0.00 3.85
2089 10050 2.754946 TTACATCCAACCGTCCACTC 57.245 50.000 0.00 0.00 0.00 3.51
2090 10051 2.290071 CCTTTACATCCAACCGTCCACT 60.290 50.000 0.00 0.00 0.00 4.00
2091 10052 2.081462 CCTTTACATCCAACCGTCCAC 58.919 52.381 0.00 0.00 0.00 4.02
2092 10053 1.700739 ACCTTTACATCCAACCGTCCA 59.299 47.619 0.00 0.00 0.00 4.02
2093 10054 2.081462 CACCTTTACATCCAACCGTCC 58.919 52.381 0.00 0.00 0.00 4.79
2094 10055 2.081462 CCACCTTTACATCCAACCGTC 58.919 52.381 0.00 0.00 0.00 4.79
2095 10056 1.422402 ACCACCTTTACATCCAACCGT 59.578 47.619 0.00 0.00 0.00 4.83
2096 10057 1.810151 CACCACCTTTACATCCAACCG 59.190 52.381 0.00 0.00 0.00 4.44
2097 10058 2.167662 CCACCACCTTTACATCCAACC 58.832 52.381 0.00 0.00 0.00 3.77
2098 10059 2.167662 CCCACCACCTTTACATCCAAC 58.832 52.381 0.00 0.00 0.00 3.77
2099 10060 2.041081 CTCCCACCACCTTTACATCCAA 59.959 50.000 0.00 0.00 0.00 3.53
2100 10061 1.633432 CTCCCACCACCTTTACATCCA 59.367 52.381 0.00 0.00 0.00 3.41
2101 10062 1.913419 TCTCCCACCACCTTTACATCC 59.087 52.381 0.00 0.00 0.00 3.51
2102 10063 3.713826 TTCTCCCACCACCTTTACATC 57.286 47.619 0.00 0.00 0.00 3.06
2103 10064 4.141018 AGTTTTCTCCCACCACCTTTACAT 60.141 41.667 0.00 0.00 0.00 2.29
2104 10065 3.203487 AGTTTTCTCCCACCACCTTTACA 59.797 43.478 0.00 0.00 0.00 2.41
2105 10066 3.568430 CAGTTTTCTCCCACCACCTTTAC 59.432 47.826 0.00 0.00 0.00 2.01
2106 10067 3.460340 TCAGTTTTCTCCCACCACCTTTA 59.540 43.478 0.00 0.00 0.00 1.85
2107 10068 2.243736 TCAGTTTTCTCCCACCACCTTT 59.756 45.455 0.00 0.00 0.00 3.11
2108 10069 1.850345 TCAGTTTTCTCCCACCACCTT 59.150 47.619 0.00 0.00 0.00 3.50
2109 10070 1.421646 CTCAGTTTTCTCCCACCACCT 59.578 52.381 0.00 0.00 0.00 4.00
2110 10071 1.143073 ACTCAGTTTTCTCCCACCACC 59.857 52.381 0.00 0.00 0.00 4.61
2111 10072 2.158813 TCACTCAGTTTTCTCCCACCAC 60.159 50.000 0.00 0.00 0.00 4.16
2112 10073 2.123589 TCACTCAGTTTTCTCCCACCA 58.876 47.619 0.00 0.00 0.00 4.17
2113 10074 2.930826 TCACTCAGTTTTCTCCCACC 57.069 50.000 0.00 0.00 0.00 4.61
2114 10075 4.451900 TCTTTCACTCAGTTTTCTCCCAC 58.548 43.478 0.00 0.00 0.00 4.61
2115 10076 4.771114 TCTTTCACTCAGTTTTCTCCCA 57.229 40.909 0.00 0.00 0.00 4.37
2116 10077 5.308825 TCATCTTTCACTCAGTTTTCTCCC 58.691 41.667 0.00 0.00 0.00 4.30
2117 10078 6.867662 TTCATCTTTCACTCAGTTTTCTCC 57.132 37.500 0.00 0.00 0.00 3.71
2118 10079 8.782144 AGATTTCATCTTTCACTCAGTTTTCTC 58.218 33.333 0.00 0.00 35.76 2.87
2119 10080 8.688747 AGATTTCATCTTTCACTCAGTTTTCT 57.311 30.769 0.00 0.00 35.76 2.52
2180 10141 3.462982 CATGGGCATGGAAATGAACATG 58.537 45.455 0.00 0.00 45.49 3.21
2181 10142 3.830744 CATGGGCATGGAAATGAACAT 57.169 42.857 0.00 0.00 35.24 2.71
2206 10167 7.380423 TTCCCATGAAAATAACCCTCAAAAA 57.620 32.000 0.00 0.00 0.00 1.94
2207 10168 6.519891 GCTTCCCATGAAAATAACCCTCAAAA 60.520 38.462 0.00 0.00 0.00 2.44
2208 10169 5.046663 GCTTCCCATGAAAATAACCCTCAAA 60.047 40.000 0.00 0.00 0.00 2.69
2209 10170 4.466015 GCTTCCCATGAAAATAACCCTCAA 59.534 41.667 0.00 0.00 0.00 3.02
2210 10171 4.023291 GCTTCCCATGAAAATAACCCTCA 58.977 43.478 0.00 0.00 0.00 3.86
2211 10172 3.384789 GGCTTCCCATGAAAATAACCCTC 59.615 47.826 0.00 0.00 0.00 4.30
2212 10173 3.245948 TGGCTTCCCATGAAAATAACCCT 60.246 43.478 0.00 0.00 35.79 4.34
2213 10174 3.103742 TGGCTTCCCATGAAAATAACCC 58.896 45.455 0.00 0.00 35.79 4.11
2226 10187 3.960755 ACTTGGCTAAAATATGGCTTCCC 59.039 43.478 0.00 0.00 0.00 3.97
2227 10188 4.038042 GGACTTGGCTAAAATATGGCTTCC 59.962 45.833 0.00 0.00 0.00 3.46
2228 10189 4.261197 CGGACTTGGCTAAAATATGGCTTC 60.261 45.833 0.00 0.00 0.00 3.86
2229 10190 3.632145 CGGACTTGGCTAAAATATGGCTT 59.368 43.478 0.00 0.00 0.00 4.35
2230 10191 3.118038 TCGGACTTGGCTAAAATATGGCT 60.118 43.478 0.00 0.00 0.00 4.75
2231 10192 3.211045 TCGGACTTGGCTAAAATATGGC 58.789 45.455 0.00 0.00 0.00 4.40
2232 10193 3.251004 GCTCGGACTTGGCTAAAATATGG 59.749 47.826 0.00 0.00 0.00 2.74
2233 10194 3.251004 GGCTCGGACTTGGCTAAAATATG 59.749 47.826 0.00 0.00 0.00 1.78
2234 10195 3.136626 AGGCTCGGACTTGGCTAAAATAT 59.863 43.478 0.00 0.00 37.32 1.28
2235 10196 2.504175 AGGCTCGGACTTGGCTAAAATA 59.496 45.455 0.00 0.00 37.32 1.40
2236 10197 1.282157 AGGCTCGGACTTGGCTAAAAT 59.718 47.619 0.00 0.00 37.32 1.82
2237 10198 0.690762 AGGCTCGGACTTGGCTAAAA 59.309 50.000 0.00 0.00 37.32 1.52
2238 10199 0.690762 AAGGCTCGGACTTGGCTAAA 59.309 50.000 0.00 0.00 38.14 1.85
2239 10200 1.206371 GTAAGGCTCGGACTTGGCTAA 59.794 52.381 2.60 0.00 38.14 3.09
2240 10201 0.822164 GTAAGGCTCGGACTTGGCTA 59.178 55.000 2.60 0.00 38.14 3.93
2241 10202 1.597461 GTAAGGCTCGGACTTGGCT 59.403 57.895 2.60 0.00 40.91 4.75
2242 10203 1.810030 CGTAAGGCTCGGACTTGGC 60.810 63.158 2.60 0.00 31.11 4.52
2243 10204 0.179134 CTCGTAAGGCTCGGACTTGG 60.179 60.000 2.60 0.00 31.11 3.61
2244 10205 0.809385 TCTCGTAAGGCTCGGACTTG 59.191 55.000 2.60 0.00 31.11 3.16
2245 10206 1.201880 GTTCTCGTAAGGCTCGGACTT 59.798 52.381 0.00 0.00 34.14 3.01
2246 10207 0.810016 GTTCTCGTAAGGCTCGGACT 59.190 55.000 0.00 0.00 38.47 3.85
2247 10208 0.524862 TGTTCTCGTAAGGCTCGGAC 59.475 55.000 0.00 0.00 38.47 4.79
2248 10209 0.524862 GTGTTCTCGTAAGGCTCGGA 59.475 55.000 0.00 0.00 38.47 4.55
2249 10210 0.458025 GGTGTTCTCGTAAGGCTCGG 60.458 60.000 0.00 0.00 38.47 4.63
2250 10211 0.458025 GGGTGTTCTCGTAAGGCTCG 60.458 60.000 0.00 0.00 38.47 5.03
2251 10212 0.108281 GGGGTGTTCTCGTAAGGCTC 60.108 60.000 0.00 0.00 38.47 4.70
2252 10213 0.544595 AGGGGTGTTCTCGTAAGGCT 60.545 55.000 0.00 0.00 38.47 4.58
2253 10214 0.391263 CAGGGGTGTTCTCGTAAGGC 60.391 60.000 0.00 0.00 38.47 4.35
2254 10215 1.263356 TCAGGGGTGTTCTCGTAAGG 58.737 55.000 0.00 0.00 38.47 2.69
2255 10216 2.496070 TCATCAGGGGTGTTCTCGTAAG 59.504 50.000 0.00 0.00 0.00 2.34
2256 10217 2.531771 TCATCAGGGGTGTTCTCGTAA 58.468 47.619 0.00 0.00 0.00 3.18
2257 10218 2.225382 TCATCAGGGGTGTTCTCGTA 57.775 50.000 0.00 0.00 0.00 3.43
2258 10219 1.348064 TTCATCAGGGGTGTTCTCGT 58.652 50.000 0.00 0.00 0.00 4.18
2259 10220 2.472695 TTTCATCAGGGGTGTTCTCG 57.527 50.000 0.00 0.00 0.00 4.04
2260 10221 6.834168 TTTATTTTCATCAGGGGTGTTCTC 57.166 37.500 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.