Multiple sequence alignment - TraesCS7D01G455400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G455400 chr7D 100.000 4079 0 0 1 4079 574270552 574274630 0.000000e+00 7533.0
1 TraesCS7D01G455400 chr7D 90.136 294 22 5 2164 2451 573912478 573912186 3.850000e-100 375.0
2 TraesCS7D01G455400 chr7D 87.273 55 7 0 2452 2506 573912154 573912100 3.400000e-06 63.9
3 TraesCS7D01G455400 chr7A 93.656 3247 134 30 889 4079 663575715 663578945 0.000000e+00 4789.0
4 TraesCS7D01G455400 chr7A 91.379 116 8 2 443 556 663575321 663575436 1.520000e-34 158.0
5 TraesCS7D01G455400 chr7A 97.222 36 0 1 829 863 663575638 663575673 4.400000e-05 60.2
6 TraesCS7D01G455400 chr7B 94.728 2997 118 11 889 3865 632795795 632792819 0.000000e+00 4623.0
7 TraesCS7D01G455400 chr7B 92.084 2855 167 21 889 3702 633005693 633008529 0.000000e+00 3965.0
8 TraesCS7D01G455400 chr7B 92.800 250 18 0 2158 2407 632710053 632709804 3.000000e-96 363.0
9 TraesCS7D01G455400 chr7B 91.775 231 19 0 2158 2388 632942300 632942530 5.090000e-84 322.0
10 TraesCS7D01G455400 chr7B 95.361 194 7 2 3888 4079 632792650 632792457 1.420000e-79 307.0
11 TraesCS7D01G455400 chr7B 86.364 132 8 5 3956 4079 633009317 633009446 7.110000e-28 135.0
12 TraesCS7D01G455400 chr3B 98.214 168 3 0 1 168 669759293 669759460 1.110000e-75 294.0
13 TraesCS7D01G455400 chr4B 97.619 168 4 0 1 168 596789516 596789349 5.160000e-74 289.0
14 TraesCS7D01G455400 chr3A 97.024 168 5 0 1 168 733632047 733632214 2.400000e-72 283.0
15 TraesCS7D01G455400 chr3A 92.899 169 9 3 1 168 122471234 122471068 4.070000e-60 243.0
16 TraesCS7D01G455400 chr2A 94.512 164 9 0 5 168 362456406 362456569 1.880000e-63 254.0
17 TraesCS7D01G455400 chr2D 91.667 168 14 0 1 168 295177632 295177799 2.450000e-57 233.0
18 TraesCS7D01G455400 chr2D 93.182 44 2 1 500 542 445746120 445746163 3.400000e-06 63.9
19 TraesCS7D01G455400 chr2B 89.881 168 16 1 1 168 353479547 353479381 8.880000e-52 215.0
20 TraesCS7D01G455400 chr2B 95.122 41 2 0 322 362 390360641 390360601 9.460000e-07 65.8
21 TraesCS7D01G455400 chr1A 94.355 124 6 1 322 444 355626641 355626518 5.380000e-44 189.0
22 TraesCS7D01G455400 chrUn 84.000 175 11 6 938 1097 315368524 315368696 7.060000e-33 152.0
23 TraesCS7D01G455400 chrUn 84.000 175 11 6 938 1097 357400958 357400786 7.060000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G455400 chr7D 574270552 574274630 4078 False 7533.000000 7533 100.000000 1 4079 1 chr7D.!!$F1 4078
1 TraesCS7D01G455400 chr7A 663575321 663578945 3624 False 1669.066667 4789 94.085667 443 4079 3 chr7A.!!$F1 3636
2 TraesCS7D01G455400 chr7B 632792457 632795795 3338 True 2465.000000 4623 95.044500 889 4079 2 chr7B.!!$R2 3190
3 TraesCS7D01G455400 chr7B 633005693 633009446 3753 False 2050.000000 3965 89.224000 889 4079 2 chr7B.!!$F2 3190

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 331 0.108804 TTTACTTCAGCTCCGCTCCG 60.109 55.0 0.00 0.0 36.40 4.63 F
440 441 0.321996 AGAGAGAAACCGAACAGGCC 59.678 55.0 0.00 0.0 46.52 5.19 F
762 867 0.605319 TTTCGGCGCCAAAGAGATGT 60.605 50.0 28.98 0.0 0.00 3.06 F
1912 2060 0.250295 CGTGACAGTGGTGATTGGGT 60.250 55.0 0.00 0.0 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 1817 0.320771 GACACGACATCCTTGTGCCT 60.321 55.000 0.00 0.0 37.77 4.75 R
1845 1993 1.220206 CTCCCTGATCAGCGCAACT 59.780 57.895 17.76 0.0 0.00 3.16 R
1941 2089 1.745264 GATCTCCTTCCCGAGCCTG 59.255 63.158 0.00 0.0 0.00 4.85 R
3270 3445 1.608717 AAGGCAGACGCGGAGAAGAT 61.609 55.000 12.47 0.0 39.92 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.839836 TGCATTGGTTCACCGGGA 59.160 55.556 6.32 0.00 39.43 5.14
18 19 1.151679 TGCATTGGTTCACCGGGAA 59.848 52.632 6.32 3.52 39.43 3.97
19 20 0.893270 TGCATTGGTTCACCGGGAAG 60.893 55.000 6.32 0.00 39.43 3.46
24 25 3.905249 GTTCACCGGGAAGCATCC 58.095 61.111 6.32 0.00 45.77 3.51
25 26 1.299976 GTTCACCGGGAAGCATCCT 59.700 57.895 6.32 0.00 45.77 3.24
33 34 2.643551 CGGGAAGCATCCTGTAATTGT 58.356 47.619 8.72 0.00 45.68 2.71
34 35 3.804036 CGGGAAGCATCCTGTAATTGTA 58.196 45.455 8.72 0.00 45.68 2.41
35 36 4.196193 CGGGAAGCATCCTGTAATTGTAA 58.804 43.478 8.72 0.00 45.68 2.41
36 37 4.638421 CGGGAAGCATCCTGTAATTGTAAA 59.362 41.667 8.72 0.00 45.68 2.01
37 38 5.220854 CGGGAAGCATCCTGTAATTGTAAAG 60.221 44.000 8.72 0.00 45.68 1.85
38 39 5.885912 GGGAAGCATCCTGTAATTGTAAAGA 59.114 40.000 8.09 0.00 45.77 2.52
39 40 6.377146 GGGAAGCATCCTGTAATTGTAAAGAA 59.623 38.462 8.09 0.00 45.77 2.52
40 41 7.415653 GGGAAGCATCCTGTAATTGTAAAGAAG 60.416 40.741 8.09 0.00 45.77 2.85
41 42 7.336931 GGAAGCATCCTGTAATTGTAAAGAAGA 59.663 37.037 0.00 0.00 42.93 2.87
42 43 8.814038 AAGCATCCTGTAATTGTAAAGAAGAT 57.186 30.769 0.00 0.00 0.00 2.40
43 44 8.814038 AGCATCCTGTAATTGTAAAGAAGATT 57.186 30.769 0.00 0.00 0.00 2.40
44 45 9.247861 AGCATCCTGTAATTGTAAAGAAGATTT 57.752 29.630 0.00 0.00 0.00 2.17
45 46 9.294030 GCATCCTGTAATTGTAAAGAAGATTTG 57.706 33.333 0.00 0.00 0.00 2.32
48 49 9.010029 TCCTGTAATTGTAAAGAAGATTTGTCC 57.990 33.333 0.00 0.00 0.00 4.02
49 50 8.792633 CCTGTAATTGTAAAGAAGATTTGTCCA 58.207 33.333 0.00 0.00 0.00 4.02
50 51 9.612620 CTGTAATTGTAAAGAAGATTTGTCCAC 57.387 33.333 0.00 0.00 0.00 4.02
51 52 8.286800 TGTAATTGTAAAGAAGATTTGTCCACG 58.713 33.333 0.00 0.00 0.00 4.94
52 53 6.877611 ATTGTAAAGAAGATTTGTCCACGT 57.122 33.333 0.00 0.00 0.00 4.49
53 54 5.666969 TGTAAAGAAGATTTGTCCACGTG 57.333 39.130 9.08 9.08 0.00 4.49
54 55 5.120399 TGTAAAGAAGATTTGTCCACGTGT 58.880 37.500 15.65 0.00 0.00 4.49
55 56 5.587043 TGTAAAGAAGATTTGTCCACGTGTT 59.413 36.000 15.65 0.00 0.00 3.32
56 57 6.762187 TGTAAAGAAGATTTGTCCACGTGTTA 59.238 34.615 15.65 0.00 0.00 2.41
57 58 6.687081 AAAGAAGATTTGTCCACGTGTTAA 57.313 33.333 15.65 3.55 0.00 2.01
58 59 6.877611 AAGAAGATTTGTCCACGTGTTAAT 57.122 33.333 15.65 7.95 0.00 1.40
59 60 6.241207 AGAAGATTTGTCCACGTGTTAATG 57.759 37.500 15.65 0.00 0.00 1.90
60 61 5.763204 AGAAGATTTGTCCACGTGTTAATGT 59.237 36.000 15.65 4.20 0.00 2.71
61 62 5.607119 AGATTTGTCCACGTGTTAATGTC 57.393 39.130 15.65 5.99 0.00 3.06
62 63 5.060506 AGATTTGTCCACGTGTTAATGTCA 58.939 37.500 15.65 0.00 0.00 3.58
63 64 5.705441 AGATTTGTCCACGTGTTAATGTCAT 59.295 36.000 15.65 0.00 0.00 3.06
64 65 5.759506 TTTGTCCACGTGTTAATGTCATT 57.240 34.783 15.65 3.06 0.00 2.57
65 66 6.862711 TTTGTCCACGTGTTAATGTCATTA 57.137 33.333 15.65 0.89 0.00 1.90
66 67 6.474819 TTGTCCACGTGTTAATGTCATTAG 57.525 37.500 15.65 0.00 0.00 1.73
67 68 5.543714 TGTCCACGTGTTAATGTCATTAGT 58.456 37.500 15.65 0.00 0.00 2.24
68 69 6.689554 TGTCCACGTGTTAATGTCATTAGTA 58.310 36.000 15.65 0.00 0.00 1.82
69 70 7.324935 TGTCCACGTGTTAATGTCATTAGTAT 58.675 34.615 15.65 0.00 0.00 2.12
70 71 7.820386 TGTCCACGTGTTAATGTCATTAGTATT 59.180 33.333 15.65 0.00 0.00 1.89
71 72 9.304731 GTCCACGTGTTAATGTCATTAGTATTA 57.695 33.333 15.65 0.00 0.00 0.98
72 73 9.872721 TCCACGTGTTAATGTCATTAGTATTAA 57.127 29.630 15.65 0.00 0.00 1.40
74 75 9.632969 CACGTGTTAATGTCATTAGTATTAAGC 57.367 33.333 7.58 0.00 29.71 3.09
75 76 9.373603 ACGTGTTAATGTCATTAGTATTAAGCA 57.626 29.630 5.45 0.00 29.71 3.91
97 98 7.271511 AGCATGAGTAGATATAGCATTTAGGC 58.728 38.462 0.00 0.00 0.00 3.93
98 99 6.481644 GCATGAGTAGATATAGCATTTAGGCC 59.518 42.308 0.00 0.00 0.00 5.19
99 100 6.546428 TGAGTAGATATAGCATTTAGGCCC 57.454 41.667 0.00 0.00 0.00 5.80
100 101 6.022958 TGAGTAGATATAGCATTTAGGCCCA 58.977 40.000 0.00 0.00 0.00 5.36
101 102 6.500400 TGAGTAGATATAGCATTTAGGCCCAA 59.500 38.462 0.00 0.00 0.00 4.12
102 103 7.017155 TGAGTAGATATAGCATTTAGGCCCAAA 59.983 37.037 0.00 0.00 0.00 3.28
103 104 7.168905 AGTAGATATAGCATTTAGGCCCAAAC 58.831 38.462 0.00 0.00 0.00 2.93
104 105 5.325239 AGATATAGCATTTAGGCCCAAACC 58.675 41.667 0.00 0.00 0.00 3.27
105 106 2.909504 TAGCATTTAGGCCCAAACCA 57.090 45.000 0.00 0.00 0.00 3.67
106 107 1.266178 AGCATTTAGGCCCAAACCAC 58.734 50.000 0.00 0.00 0.00 4.16
107 108 0.972883 GCATTTAGGCCCAAACCACA 59.027 50.000 0.00 0.00 0.00 4.17
108 109 1.554617 GCATTTAGGCCCAAACCACAT 59.445 47.619 0.00 0.00 0.00 3.21
109 110 2.027285 GCATTTAGGCCCAAACCACATT 60.027 45.455 0.00 0.00 0.00 2.71
110 111 3.598299 CATTTAGGCCCAAACCACATTG 58.402 45.455 0.00 0.00 0.00 2.82
111 112 2.390225 TTAGGCCCAAACCACATTGT 57.610 45.000 0.00 0.00 0.00 2.71
112 113 3.527507 TTAGGCCCAAACCACATTGTA 57.472 42.857 0.00 0.00 0.00 2.41
113 114 2.390225 AGGCCCAAACCACATTGTAA 57.610 45.000 0.00 0.00 0.00 2.41
114 115 2.683768 AGGCCCAAACCACATTGTAAA 58.316 42.857 0.00 0.00 0.00 2.01
115 116 3.041946 AGGCCCAAACCACATTGTAAAA 58.958 40.909 0.00 0.00 0.00 1.52
116 117 3.456277 AGGCCCAAACCACATTGTAAAAA 59.544 39.130 0.00 0.00 0.00 1.94
117 118 3.812609 GGCCCAAACCACATTGTAAAAAG 59.187 43.478 0.00 0.00 0.00 2.27
118 119 4.447290 GCCCAAACCACATTGTAAAAAGT 58.553 39.130 0.00 0.00 0.00 2.66
119 120 5.453480 GGCCCAAACCACATTGTAAAAAGTA 60.453 40.000 0.00 0.00 0.00 2.24
120 121 6.227522 GCCCAAACCACATTGTAAAAAGTAT 58.772 36.000 0.00 0.00 0.00 2.12
121 122 6.147000 GCCCAAACCACATTGTAAAAAGTATG 59.853 38.462 0.00 0.00 0.00 2.39
122 123 7.437748 CCCAAACCACATTGTAAAAAGTATGA 58.562 34.615 0.00 0.00 0.00 2.15
123 124 8.093927 CCCAAACCACATTGTAAAAAGTATGAT 58.906 33.333 0.00 0.00 0.00 2.45
161 162 9.815306 AGAATAAGCATAGATAGTAGGAAGACA 57.185 33.333 0.00 0.00 0.00 3.41
165 166 7.661536 AGCATAGATAGTAGGAAGACAAACA 57.338 36.000 0.00 0.00 0.00 2.83
166 167 8.079211 AGCATAGATAGTAGGAAGACAAACAA 57.921 34.615 0.00 0.00 0.00 2.83
167 168 8.540388 AGCATAGATAGTAGGAAGACAAACAAA 58.460 33.333 0.00 0.00 0.00 2.83
168 169 8.604890 GCATAGATAGTAGGAAGACAAACAAAC 58.395 37.037 0.00 0.00 0.00 2.93
169 170 9.099454 CATAGATAGTAGGAAGACAAACAAACC 57.901 37.037 0.00 0.00 0.00 3.27
170 171 7.074653 AGATAGTAGGAAGACAAACAAACCA 57.925 36.000 0.00 0.00 0.00 3.67
171 172 7.690256 AGATAGTAGGAAGACAAACAAACCAT 58.310 34.615 0.00 0.00 0.00 3.55
172 173 8.164070 AGATAGTAGGAAGACAAACAAACCATT 58.836 33.333 0.00 0.00 0.00 3.16
173 174 9.444600 GATAGTAGGAAGACAAACAAACCATTA 57.555 33.333 0.00 0.00 0.00 1.90
174 175 9.802039 ATAGTAGGAAGACAAACAAACCATTAA 57.198 29.630 0.00 0.00 0.00 1.40
175 176 7.937649 AGTAGGAAGACAAACAAACCATTAAC 58.062 34.615 0.00 0.00 0.00 2.01
176 177 6.783708 AGGAAGACAAACAAACCATTAACA 57.216 33.333 0.00 0.00 0.00 2.41
177 178 6.569780 AGGAAGACAAACAAACCATTAACAC 58.430 36.000 0.00 0.00 0.00 3.32
178 179 6.379988 AGGAAGACAAACAAACCATTAACACT 59.620 34.615 0.00 0.00 0.00 3.55
179 180 7.558444 AGGAAGACAAACAAACCATTAACACTA 59.442 33.333 0.00 0.00 0.00 2.74
180 181 8.192110 GGAAGACAAACAAACCATTAACACTAA 58.808 33.333 0.00 0.00 0.00 2.24
181 182 9.744468 GAAGACAAACAAACCATTAACACTAAT 57.256 29.630 0.00 0.00 0.00 1.73
182 183 9.744468 AAGACAAACAAACCATTAACACTAATC 57.256 29.630 0.00 0.00 0.00 1.75
183 184 8.908903 AGACAAACAAACCATTAACACTAATCA 58.091 29.630 0.00 0.00 0.00 2.57
184 185 9.522804 GACAAACAAACCATTAACACTAATCAA 57.477 29.630 0.00 0.00 0.00 2.57
187 188 8.532977 AACAAACCATTAACACTAATCAATGC 57.467 30.769 0.00 0.00 0.00 3.56
188 189 7.665690 ACAAACCATTAACACTAATCAATGCA 58.334 30.769 0.00 0.00 0.00 3.96
189 190 7.814107 ACAAACCATTAACACTAATCAATGCAG 59.186 33.333 0.00 0.00 0.00 4.41
190 191 7.701539 AACCATTAACACTAATCAATGCAGA 57.298 32.000 0.00 0.00 0.00 4.26
191 192 7.325660 ACCATTAACACTAATCAATGCAGAG 57.674 36.000 0.00 0.00 0.00 3.35
192 193 7.112122 ACCATTAACACTAATCAATGCAGAGA 58.888 34.615 0.00 0.00 0.00 3.10
193 194 7.776969 ACCATTAACACTAATCAATGCAGAGAT 59.223 33.333 0.00 0.00 0.00 2.75
194 195 8.627403 CCATTAACACTAATCAATGCAGAGATT 58.373 33.333 17.32 17.32 38.05 2.40
198 199 8.976986 AACACTAATCAATGCAGAGATTTTTC 57.023 30.769 18.10 0.00 36.07 2.29
199 200 7.246311 ACACTAATCAATGCAGAGATTTTTCG 58.754 34.615 18.10 9.68 36.07 3.46
200 201 6.195983 CACTAATCAATGCAGAGATTTTTCGC 59.804 38.462 18.10 0.00 36.07 4.70
201 202 4.978083 ATCAATGCAGAGATTTTTCGCT 57.022 36.364 0.00 0.00 0.00 4.93
202 203 4.346734 TCAATGCAGAGATTTTTCGCTC 57.653 40.909 0.00 0.00 0.00 5.03
203 204 3.096461 CAATGCAGAGATTTTTCGCTCG 58.904 45.455 0.00 0.00 36.29 5.03
204 205 1.078709 TGCAGAGATTTTTCGCTCGG 58.921 50.000 0.00 0.00 36.29 4.63
205 206 1.079503 GCAGAGATTTTTCGCTCGGT 58.920 50.000 0.00 0.00 36.29 4.69
206 207 1.464997 GCAGAGATTTTTCGCTCGGTT 59.535 47.619 0.00 0.00 36.29 4.44
207 208 2.095718 GCAGAGATTTTTCGCTCGGTTT 60.096 45.455 0.00 0.00 36.29 3.27
208 209 3.737305 CAGAGATTTTTCGCTCGGTTTC 58.263 45.455 0.00 0.00 36.29 2.78
209 210 3.433615 CAGAGATTTTTCGCTCGGTTTCT 59.566 43.478 0.00 0.00 36.29 2.52
210 211 3.680458 AGAGATTTTTCGCTCGGTTTCTC 59.320 43.478 0.00 0.00 36.29 2.87
211 212 3.665190 AGATTTTTCGCTCGGTTTCTCT 58.335 40.909 0.00 0.00 0.00 3.10
212 213 4.065789 AGATTTTTCGCTCGGTTTCTCTT 58.934 39.130 0.00 0.00 0.00 2.85
213 214 5.235516 AGATTTTTCGCTCGGTTTCTCTTA 58.764 37.500 0.00 0.00 0.00 2.10
214 215 4.720530 TTTTTCGCTCGGTTTCTCTTAC 57.279 40.909 0.00 0.00 0.00 2.34
215 216 3.374220 TTTCGCTCGGTTTCTCTTACA 57.626 42.857 0.00 0.00 0.00 2.41
216 217 3.587797 TTCGCTCGGTTTCTCTTACAT 57.412 42.857 0.00 0.00 0.00 2.29
217 218 4.707030 TTCGCTCGGTTTCTCTTACATA 57.293 40.909 0.00 0.00 0.00 2.29
218 219 4.707030 TCGCTCGGTTTCTCTTACATAA 57.293 40.909 0.00 0.00 0.00 1.90
219 220 5.063180 TCGCTCGGTTTCTCTTACATAAA 57.937 39.130 0.00 0.00 0.00 1.40
220 221 4.860907 TCGCTCGGTTTCTCTTACATAAAC 59.139 41.667 0.00 0.00 33.37 2.01
221 222 4.863131 CGCTCGGTTTCTCTTACATAAACT 59.137 41.667 0.00 0.00 34.34 2.66
222 223 5.004535 CGCTCGGTTTCTCTTACATAAACTC 59.995 44.000 0.00 0.00 34.34 3.01
223 224 6.100668 GCTCGGTTTCTCTTACATAAACTCT 58.899 40.000 0.00 0.00 34.34 3.24
224 225 6.035112 GCTCGGTTTCTCTTACATAAACTCTG 59.965 42.308 0.00 0.00 34.34 3.35
225 226 6.989659 TCGGTTTCTCTTACATAAACTCTGT 58.010 36.000 0.00 0.00 34.34 3.41
226 227 7.439381 TCGGTTTCTCTTACATAAACTCTGTT 58.561 34.615 0.00 0.00 34.34 3.16
227 228 7.929785 TCGGTTTCTCTTACATAAACTCTGTTT 59.070 33.333 1.33 1.33 34.34 2.83
228 229 8.557029 CGGTTTCTCTTACATAAACTCTGTTTT 58.443 33.333 0.94 0.00 34.34 2.43
233 234 8.774586 TCTCTTACATAAACTCTGTTTTTCTGC 58.225 33.333 0.94 0.00 0.00 4.26
234 235 7.871853 TCTTACATAAACTCTGTTTTTCTGCC 58.128 34.615 0.94 0.00 0.00 4.85
235 236 7.719633 TCTTACATAAACTCTGTTTTTCTGCCT 59.280 33.333 0.94 0.00 0.00 4.75
236 237 8.911918 TTACATAAACTCTGTTTTTCTGCCTA 57.088 30.769 0.94 0.00 0.00 3.93
237 238 7.203255 ACATAAACTCTGTTTTTCTGCCTAC 57.797 36.000 0.94 0.00 0.00 3.18
238 239 6.998673 ACATAAACTCTGTTTTTCTGCCTACT 59.001 34.615 0.94 0.00 0.00 2.57
239 240 5.757850 AAACTCTGTTTTTCTGCCTACTG 57.242 39.130 0.00 0.00 0.00 2.74
240 241 4.423625 ACTCTGTTTTTCTGCCTACTGT 57.576 40.909 0.00 0.00 0.00 3.55
241 242 4.781934 ACTCTGTTTTTCTGCCTACTGTT 58.218 39.130 0.00 0.00 0.00 3.16
242 243 4.816925 ACTCTGTTTTTCTGCCTACTGTTC 59.183 41.667 0.00 0.00 0.00 3.18
243 244 4.776349 TCTGTTTTTCTGCCTACTGTTCA 58.224 39.130 0.00 0.00 0.00 3.18
244 245 5.189928 TCTGTTTTTCTGCCTACTGTTCAA 58.810 37.500 0.00 0.00 0.00 2.69
245 246 5.650266 TCTGTTTTTCTGCCTACTGTTCAAA 59.350 36.000 0.00 0.00 0.00 2.69
246 247 6.151985 TCTGTTTTTCTGCCTACTGTTCAAAA 59.848 34.615 0.00 0.00 0.00 2.44
247 248 6.692486 TGTTTTTCTGCCTACTGTTCAAAAA 58.308 32.000 0.00 0.00 0.00 1.94
248 249 6.811170 TGTTTTTCTGCCTACTGTTCAAAAAG 59.189 34.615 0.00 0.00 0.00 2.27
249 250 4.568152 TTCTGCCTACTGTTCAAAAAGC 57.432 40.909 0.00 0.00 0.00 3.51
250 251 3.820557 TCTGCCTACTGTTCAAAAAGCT 58.179 40.909 0.00 0.00 0.00 3.74
251 252 4.968259 TCTGCCTACTGTTCAAAAAGCTA 58.032 39.130 0.00 0.00 0.00 3.32
252 253 5.373222 TCTGCCTACTGTTCAAAAAGCTAA 58.627 37.500 0.00 0.00 0.00 3.09
253 254 5.825679 TCTGCCTACTGTTCAAAAAGCTAAA 59.174 36.000 0.00 0.00 0.00 1.85
254 255 6.320164 TCTGCCTACTGTTCAAAAAGCTAAAA 59.680 34.615 0.00 0.00 0.00 1.52
255 256 6.868622 TGCCTACTGTTCAAAAAGCTAAAAA 58.131 32.000 0.00 0.00 0.00 1.94
289 290 4.871513 GGAACCATTCACCAGAAAGAAAC 58.128 43.478 0.00 0.00 37.29 2.78
290 291 4.340950 GGAACCATTCACCAGAAAGAAACA 59.659 41.667 0.00 0.00 37.29 2.83
291 292 5.163457 GGAACCATTCACCAGAAAGAAACAA 60.163 40.000 0.00 0.00 37.29 2.83
292 293 6.462909 GGAACCATTCACCAGAAAGAAACAAT 60.463 38.462 0.00 0.00 37.29 2.71
293 294 5.846203 ACCATTCACCAGAAAGAAACAATG 58.154 37.500 0.00 0.00 37.29 2.82
294 295 5.598005 ACCATTCACCAGAAAGAAACAATGA 59.402 36.000 0.00 0.00 37.29 2.57
295 296 6.154445 CCATTCACCAGAAAGAAACAATGAG 58.846 40.000 0.00 0.00 37.29 2.90
296 297 4.836125 TCACCAGAAAGAAACAATGAGC 57.164 40.909 0.00 0.00 0.00 4.26
297 298 4.464008 TCACCAGAAAGAAACAATGAGCT 58.536 39.130 0.00 0.00 0.00 4.09
298 299 4.889409 TCACCAGAAAGAAACAATGAGCTT 59.111 37.500 0.00 0.00 0.00 3.74
299 300 4.980434 CACCAGAAAGAAACAATGAGCTTG 59.020 41.667 0.00 0.00 40.90 4.01
300 301 3.985925 CCAGAAAGAAACAATGAGCTTGC 59.014 43.478 0.00 0.00 38.50 4.01
301 302 4.500205 CCAGAAAGAAACAATGAGCTTGCA 60.500 41.667 0.00 0.00 38.50 4.08
302 303 5.227908 CAGAAAGAAACAATGAGCTTGCAT 58.772 37.500 0.00 0.00 38.50 3.96
303 304 5.694910 CAGAAAGAAACAATGAGCTTGCATT 59.305 36.000 0.00 0.00 38.50 3.56
304 305 5.924825 AGAAAGAAACAATGAGCTTGCATTC 59.075 36.000 0.00 0.00 38.50 2.67
305 306 4.859304 AGAAACAATGAGCTTGCATTCA 57.141 36.364 0.00 0.00 38.50 2.57
306 307 4.806330 AGAAACAATGAGCTTGCATTCAG 58.194 39.130 0.00 0.00 38.50 3.02
307 308 2.649331 ACAATGAGCTTGCATTCAGC 57.351 45.000 0.36 0.36 45.96 4.26
321 322 5.446031 GCATTCAGCAAATTTACTTCAGC 57.554 39.130 0.00 0.00 44.79 4.26
322 323 5.166398 GCATTCAGCAAATTTACTTCAGCT 58.834 37.500 0.00 0.00 44.79 4.24
323 324 5.287992 GCATTCAGCAAATTTACTTCAGCTC 59.712 40.000 0.00 0.00 44.79 4.09
324 325 5.376854 TTCAGCAAATTTACTTCAGCTCC 57.623 39.130 0.00 0.00 0.00 4.70
325 326 3.436704 TCAGCAAATTTACTTCAGCTCCG 59.563 43.478 0.00 0.00 0.00 4.63
326 327 2.162408 AGCAAATTTACTTCAGCTCCGC 59.838 45.455 0.00 0.00 0.00 5.54
327 328 2.162408 GCAAATTTACTTCAGCTCCGCT 59.838 45.455 0.00 0.00 40.77 5.52
328 329 3.729163 GCAAATTTACTTCAGCTCCGCTC 60.729 47.826 0.00 0.00 36.40 5.03
329 330 2.317530 ATTTACTTCAGCTCCGCTCC 57.682 50.000 0.00 0.00 36.40 4.70
330 331 0.108804 TTTACTTCAGCTCCGCTCCG 60.109 55.000 0.00 0.00 36.40 4.63
331 332 2.558554 TTACTTCAGCTCCGCTCCGC 62.559 60.000 0.00 0.00 36.40 5.54
332 333 4.140599 CTTCAGCTCCGCTCCGCT 62.141 66.667 0.00 0.00 36.40 5.52
333 334 4.135153 TTCAGCTCCGCTCCGCTC 62.135 66.667 0.00 0.00 36.40 5.03
335 336 4.441695 CAGCTCCGCTCCGCTCAA 62.442 66.667 0.00 0.00 36.40 3.02
336 337 4.443266 AGCTCCGCTCCGCTCAAC 62.443 66.667 0.00 0.00 30.62 3.18
337 338 4.443266 GCTCCGCTCCGCTCAACT 62.443 66.667 0.00 0.00 0.00 3.16
338 339 2.202676 CTCCGCTCCGCTCAACTC 60.203 66.667 0.00 0.00 0.00 3.01
339 340 3.708220 CTCCGCTCCGCTCAACTCC 62.708 68.421 0.00 0.00 0.00 3.85
340 341 4.069232 CCGCTCCGCTCAACTCCA 62.069 66.667 0.00 0.00 0.00 3.86
341 342 2.811317 CGCTCCGCTCAACTCCAC 60.811 66.667 0.00 0.00 0.00 4.02
342 343 2.811317 GCTCCGCTCAACTCCACG 60.811 66.667 0.00 0.00 0.00 4.94
343 344 2.125912 CTCCGCTCAACTCCACGG 60.126 66.667 0.00 0.00 46.97 4.94
348 349 4.586618 CTCAACTCCACGGAGCTG 57.413 61.111 13.16 11.35 45.54 4.24
349 350 1.739562 CTCAACTCCACGGAGCTGC 60.740 63.158 13.16 0.00 45.54 5.25
350 351 3.114616 CAACTCCACGGAGCTGCG 61.115 66.667 26.95 26.95 45.54 5.18
351 352 4.379243 AACTCCACGGAGCTGCGG 62.379 66.667 31.29 19.25 45.54 5.69
353 354 4.504916 CTCCACGGAGCTGCGGAG 62.505 72.222 31.29 23.31 39.20 4.63
373 374 1.714794 CTCGATTTGAGTTGCTCCGT 58.285 50.000 0.00 0.00 40.03 4.69
374 375 2.876091 CTCGATTTGAGTTGCTCCGTA 58.124 47.619 0.00 0.00 40.03 4.02
375 376 3.250744 CTCGATTTGAGTTGCTCCGTAA 58.749 45.455 0.00 0.00 40.03 3.18
376 377 3.655486 TCGATTTGAGTTGCTCCGTAAA 58.345 40.909 0.00 0.00 0.00 2.01
377 378 4.059511 TCGATTTGAGTTGCTCCGTAAAA 58.940 39.130 0.00 0.00 0.00 1.52
378 379 4.512198 TCGATTTGAGTTGCTCCGTAAAAA 59.488 37.500 0.00 0.00 0.00 1.94
379 380 4.611366 CGATTTGAGTTGCTCCGTAAAAAC 59.389 41.667 0.00 0.00 0.00 2.43
380 381 5.560183 CGATTTGAGTTGCTCCGTAAAAACT 60.560 40.000 0.00 0.00 35.62 2.66
381 382 4.545823 TTGAGTTGCTCCGTAAAAACTG 57.454 40.909 0.00 0.00 33.14 3.16
382 383 2.289547 TGAGTTGCTCCGTAAAAACTGC 59.710 45.455 0.00 0.00 33.14 4.40
383 384 2.289547 GAGTTGCTCCGTAAAAACTGCA 59.710 45.455 0.00 0.00 33.14 4.41
384 385 2.290641 AGTTGCTCCGTAAAAACTGCAG 59.709 45.455 13.48 13.48 31.82 4.41
385 386 1.234821 TGCTCCGTAAAAACTGCAGG 58.765 50.000 19.93 0.00 0.00 4.85
386 387 1.202710 TGCTCCGTAAAAACTGCAGGA 60.203 47.619 19.93 2.49 0.00 3.86
387 388 1.464997 GCTCCGTAAAAACTGCAGGAG 59.535 52.381 19.93 13.93 45.79 3.69
388 389 1.464997 CTCCGTAAAAACTGCAGGAGC 59.535 52.381 19.93 0.98 38.78 4.70
389 390 0.521735 CCGTAAAAACTGCAGGAGCC 59.478 55.000 19.93 0.00 41.13 4.70
390 391 0.521735 CGTAAAAACTGCAGGAGCCC 59.478 55.000 19.93 0.02 41.13 5.19
391 392 0.521735 GTAAAAACTGCAGGAGCCCG 59.478 55.000 19.93 0.00 41.13 6.13
392 393 1.241315 TAAAAACTGCAGGAGCCCGC 61.241 55.000 19.93 0.00 41.13 6.13
393 394 2.983725 AAAAACTGCAGGAGCCCGCT 62.984 55.000 19.93 0.00 41.13 5.52
394 395 3.909086 AAACTGCAGGAGCCCGCTC 62.909 63.158 19.93 8.23 41.13 5.03
414 415 2.493973 CTCTGGGAGCTGAGTCGC 59.506 66.667 0.00 0.00 0.00 5.19
415 416 3.408501 CTCTGGGAGCTGAGTCGCG 62.409 68.421 0.00 0.00 34.40 5.87
416 417 4.504916 CTGGGAGCTGAGTCGCGG 62.505 72.222 6.13 0.00 34.40 6.46
419 420 4.200283 GGAGCTGAGTCGCGGGAG 62.200 72.222 6.13 0.00 34.40 4.30
431 432 4.921834 CGGGAGCAGAGAGAAACC 57.078 61.111 0.00 0.00 0.00 3.27
432 433 1.153745 CGGGAGCAGAGAGAAACCG 60.154 63.158 0.00 0.00 0.00 4.44
433 434 1.595993 CGGGAGCAGAGAGAAACCGA 61.596 60.000 0.00 0.00 42.19 4.69
434 435 0.608640 GGGAGCAGAGAGAAACCGAA 59.391 55.000 0.00 0.00 0.00 4.30
435 436 1.673329 GGGAGCAGAGAGAAACCGAAC 60.673 57.143 0.00 0.00 0.00 3.95
436 437 1.000955 GGAGCAGAGAGAAACCGAACA 59.999 52.381 0.00 0.00 0.00 3.18
437 438 2.333014 GAGCAGAGAGAAACCGAACAG 58.667 52.381 0.00 0.00 0.00 3.16
439 440 1.433534 CAGAGAGAAACCGAACAGGC 58.566 55.000 0.00 0.00 46.52 4.85
440 441 0.321996 AGAGAGAAACCGAACAGGCC 59.678 55.000 0.00 0.00 46.52 5.19
441 442 0.673956 GAGAGAAACCGAACAGGCCC 60.674 60.000 0.00 0.00 46.52 5.80
480 482 2.292016 CGGGCCGTGAATATTGCAATAA 59.708 45.455 22.37 4.24 0.00 1.40
515 517 7.485825 TGCAATAATTTATGTTGAAACGACG 57.514 32.000 0.00 0.00 0.00 5.12
547 652 8.926715 AATTTATTGGCTAATTCGAAAAGGTC 57.073 30.769 0.00 0.00 0.00 3.85
552 657 3.756963 GGCTAATTCGAAAAGGTCCTTGT 59.243 43.478 4.45 0.00 0.00 3.16
556 661 7.364970 GCTAATTCGAAAAGGTCCTTGTTTTA 58.635 34.615 4.45 0.00 0.00 1.52
599 704 9.537192 TCTTTCTCTTTTGATGTCGTAAAGTTA 57.463 29.630 0.00 0.00 32.22 2.24
609 714 7.188157 TGATGTCGTAAAGTTAAAACACCAAC 58.812 34.615 0.00 0.00 0.00 3.77
664 769 8.615878 TTGTGTGTATATATTCAGTTATGGGC 57.384 34.615 0.00 0.00 0.00 5.36
665 770 7.740805 TGTGTGTATATATTCAGTTATGGGCA 58.259 34.615 0.00 0.00 0.00 5.36
666 771 8.382405 TGTGTGTATATATTCAGTTATGGGCAT 58.618 33.333 0.00 0.00 0.00 4.40
667 772 8.883731 GTGTGTATATATTCAGTTATGGGCATC 58.116 37.037 0.00 0.00 0.00 3.91
668 773 8.825774 TGTGTATATATTCAGTTATGGGCATCT 58.174 33.333 0.00 0.00 0.00 2.90
669 774 9.319143 GTGTATATATTCAGTTATGGGCATCTC 57.681 37.037 0.00 0.00 0.00 2.75
670 775 9.045745 TGTATATATTCAGTTATGGGCATCTCA 57.954 33.333 0.00 0.00 0.00 3.27
671 776 9.890629 GTATATATTCAGTTATGGGCATCTCAA 57.109 33.333 0.00 0.00 0.00 3.02
673 778 3.565764 TCAGTTATGGGCATCTCAAGG 57.434 47.619 0.00 0.00 0.00 3.61
674 779 1.952296 CAGTTATGGGCATCTCAAGGC 59.048 52.381 0.00 0.00 0.00 4.35
675 780 1.849039 AGTTATGGGCATCTCAAGGCT 59.151 47.619 0.00 0.00 31.41 4.58
676 781 2.243221 AGTTATGGGCATCTCAAGGCTT 59.757 45.455 0.00 0.00 31.41 4.35
677 782 2.620585 GTTATGGGCATCTCAAGGCTTC 59.379 50.000 0.00 0.00 31.41 3.86
678 783 0.924823 ATGGGCATCTCAAGGCTTCT 59.075 50.000 0.00 0.00 31.41 2.85
679 784 0.700564 TGGGCATCTCAAGGCTTCTT 59.299 50.000 0.00 0.00 31.41 2.52
680 785 1.076024 TGGGCATCTCAAGGCTTCTTT 59.924 47.619 0.00 0.00 31.41 2.52
681 786 2.174360 GGGCATCTCAAGGCTTCTTTT 58.826 47.619 0.00 0.00 31.41 2.27
682 787 2.165234 GGGCATCTCAAGGCTTCTTTTC 59.835 50.000 0.00 0.00 31.41 2.29
683 788 2.159462 GGCATCTCAAGGCTTCTTTTCG 60.159 50.000 0.00 0.00 31.41 3.46
684 789 2.730402 GCATCTCAAGGCTTCTTTTCGC 60.730 50.000 0.00 0.00 0.00 4.70
685 790 1.523758 TCTCAAGGCTTCTTTTCGCC 58.476 50.000 0.00 0.00 46.65 5.54
693 798 4.893424 GGCTTCTTTTCGCCATACATAA 57.107 40.909 0.00 0.00 45.59 1.90
694 799 5.243426 GGCTTCTTTTCGCCATACATAAA 57.757 39.130 0.00 0.00 45.59 1.40
695 800 5.034797 GGCTTCTTTTCGCCATACATAAAC 58.965 41.667 0.00 0.00 45.59 2.01
696 801 5.163652 GGCTTCTTTTCGCCATACATAAACT 60.164 40.000 0.00 0.00 45.59 2.66
697 802 6.037830 GGCTTCTTTTCGCCATACATAAACTA 59.962 38.462 0.00 0.00 45.59 2.24
698 803 7.414762 GGCTTCTTTTCGCCATACATAAACTAA 60.415 37.037 0.00 0.00 45.59 2.24
699 804 7.966204 GCTTCTTTTCGCCATACATAAACTAAA 59.034 33.333 0.00 0.00 0.00 1.85
700 805 9.274065 CTTCTTTTCGCCATACATAAACTAAAC 57.726 33.333 0.00 0.00 0.00 2.01
701 806 7.457868 TCTTTTCGCCATACATAAACTAAACG 58.542 34.615 0.00 0.00 0.00 3.60
702 807 5.721876 TTCGCCATACATAAACTAAACGG 57.278 39.130 0.00 0.00 0.00 4.44
703 808 3.556775 TCGCCATACATAAACTAAACGGC 59.443 43.478 0.00 0.00 0.00 5.68
704 809 3.558418 CGCCATACATAAACTAAACGGCT 59.442 43.478 0.00 0.00 34.83 5.52
705 810 4.746115 CGCCATACATAAACTAAACGGCTA 59.254 41.667 0.00 0.00 34.83 3.93
706 811 5.107607 CGCCATACATAAACTAAACGGCTAG 60.108 44.000 0.00 0.00 34.83 3.42
707 812 5.756833 GCCATACATAAACTAAACGGCTAGT 59.243 40.000 0.00 0.00 34.17 2.57
708 813 6.292703 GCCATACATAAACTAAACGGCTAGTG 60.293 42.308 0.00 0.00 32.35 2.74
709 814 6.202188 CCATACATAAACTAAACGGCTAGTGG 59.798 42.308 0.02 0.00 32.35 4.00
710 815 5.410355 ACATAAACTAAACGGCTAGTGGA 57.590 39.130 0.02 0.00 32.35 4.02
711 816 5.797051 ACATAAACTAAACGGCTAGTGGAA 58.203 37.500 0.02 0.00 32.35 3.53
712 817 6.232692 ACATAAACTAAACGGCTAGTGGAAA 58.767 36.000 0.02 0.00 32.35 3.13
713 818 6.148315 ACATAAACTAAACGGCTAGTGGAAAC 59.852 38.462 0.02 0.00 32.35 2.78
714 819 3.756933 ACTAAACGGCTAGTGGAAACA 57.243 42.857 0.00 0.00 38.70 2.83
731 836 7.184800 TGGAAACACCGATATATTTCATTCG 57.815 36.000 0.00 0.00 42.61 3.34
732 837 6.764085 TGGAAACACCGATATATTTCATTCGT 59.236 34.615 0.00 0.00 42.61 3.85
733 838 7.281324 TGGAAACACCGATATATTTCATTCGTT 59.719 33.333 0.00 0.00 42.61 3.85
734 839 8.126700 GGAAACACCGATATATTTCATTCGTTT 58.873 33.333 0.00 0.00 33.58 3.60
735 840 9.498307 GAAACACCGATATATTTCATTCGTTTT 57.502 29.630 0.00 0.00 32.46 2.43
736 841 9.849166 AAACACCGATATATTTCATTCGTTTTT 57.151 25.926 0.00 0.00 0.00 1.94
737 842 9.498307 AACACCGATATATTTCATTCGTTTTTC 57.502 29.630 0.00 0.00 0.00 2.29
738 843 8.889717 ACACCGATATATTTCATTCGTTTTTCT 58.110 29.630 0.00 0.00 0.00 2.52
739 844 9.716507 CACCGATATATTTCATTCGTTTTTCTT 57.283 29.630 0.00 0.00 0.00 2.52
749 854 7.328157 TCATTCGTTTTTCTTTTATTTCGGC 57.672 32.000 0.00 0.00 0.00 5.54
750 855 5.793023 TTCGTTTTTCTTTTATTTCGGCG 57.207 34.783 0.00 0.00 0.00 6.46
751 856 3.664947 TCGTTTTTCTTTTATTTCGGCGC 59.335 39.130 0.00 0.00 0.00 6.53
752 857 3.181547 CGTTTTTCTTTTATTTCGGCGCC 60.182 43.478 19.07 19.07 0.00 6.53
753 858 3.644884 TTTTCTTTTATTTCGGCGCCA 57.355 38.095 28.98 11.20 0.00 5.69
754 859 3.644884 TTTCTTTTATTTCGGCGCCAA 57.355 38.095 28.98 15.18 0.00 4.52
755 860 3.644884 TTCTTTTATTTCGGCGCCAAA 57.355 38.095 28.98 24.19 0.00 3.28
756 861 3.210358 TCTTTTATTTCGGCGCCAAAG 57.790 42.857 28.98 24.94 0.00 2.77
757 862 2.814919 TCTTTTATTTCGGCGCCAAAGA 59.185 40.909 28.98 26.71 0.00 2.52
758 863 2.911819 TTTATTTCGGCGCCAAAGAG 57.088 45.000 28.98 9.94 0.00 2.85
759 864 2.102070 TTATTTCGGCGCCAAAGAGA 57.898 45.000 28.98 12.55 0.00 3.10
760 865 2.325583 TATTTCGGCGCCAAAGAGAT 57.674 45.000 28.98 17.91 0.00 2.75
761 866 0.734889 ATTTCGGCGCCAAAGAGATG 59.265 50.000 28.98 7.38 0.00 2.90
762 867 0.605319 TTTCGGCGCCAAAGAGATGT 60.605 50.000 28.98 0.00 0.00 3.06
763 868 0.605319 TTCGGCGCCAAAGAGATGTT 60.605 50.000 28.98 0.00 0.00 2.71
764 869 1.019278 TCGGCGCCAAAGAGATGTTC 61.019 55.000 28.98 0.00 0.00 3.18
765 870 1.298157 CGGCGCCAAAGAGATGTTCA 61.298 55.000 28.98 0.00 0.00 3.18
766 871 1.098050 GGCGCCAAAGAGATGTTCAT 58.902 50.000 24.80 0.00 0.00 2.57
767 872 2.288666 GGCGCCAAAGAGATGTTCATA 58.711 47.619 24.80 0.00 0.00 2.15
768 873 2.289002 GGCGCCAAAGAGATGTTCATAG 59.711 50.000 24.80 0.00 0.00 2.23
769 874 2.939103 GCGCCAAAGAGATGTTCATAGT 59.061 45.455 0.00 0.00 0.00 2.12
770 875 4.119862 GCGCCAAAGAGATGTTCATAGTA 58.880 43.478 0.00 0.00 0.00 1.82
771 876 4.025647 GCGCCAAAGAGATGTTCATAGTAC 60.026 45.833 0.00 0.00 0.00 2.73
772 877 5.109210 CGCCAAAGAGATGTTCATAGTACA 58.891 41.667 0.00 0.00 0.00 2.90
773 878 5.755375 CGCCAAAGAGATGTTCATAGTACAT 59.245 40.000 0.00 0.00 38.86 2.29
860 965 7.081976 ACATCTGTTTAACTGTAATTTTCCGC 58.918 34.615 0.00 0.00 0.00 5.54
862 967 4.785417 TGTTTAACTGTAATTTTCCGCCG 58.215 39.130 0.00 0.00 0.00 6.46
863 968 4.275443 TGTTTAACTGTAATTTTCCGCCGT 59.725 37.500 0.00 0.00 0.00 5.68
864 969 5.468072 TGTTTAACTGTAATTTTCCGCCGTA 59.532 36.000 0.00 0.00 0.00 4.02
866 971 6.551385 TTAACTGTAATTTTCCGCCGTAAA 57.449 33.333 0.00 0.00 0.00 2.01
867 972 5.632244 AACTGTAATTTTCCGCCGTAAAT 57.368 34.783 0.00 0.00 0.00 1.40
868 973 5.632244 ACTGTAATTTTCCGCCGTAAATT 57.368 34.783 10.59 10.59 37.61 1.82
869 974 5.395642 ACTGTAATTTTCCGCCGTAAATTG 58.604 37.500 13.89 4.33 35.41 2.32
870 975 5.048573 ACTGTAATTTTCCGCCGTAAATTGT 60.049 36.000 13.89 4.78 35.41 2.71
871 976 5.770417 TGTAATTTTCCGCCGTAAATTGTT 58.230 33.333 13.89 0.00 35.41 2.83
872 977 6.214399 TGTAATTTTCCGCCGTAAATTGTTT 58.786 32.000 13.89 0.00 35.41 2.83
873 978 5.832568 AATTTTCCGCCGTAAATTGTTTC 57.167 34.783 6.43 0.00 33.84 2.78
921 1050 1.737838 CCGCTGGATCTTGCAAGTAA 58.262 50.000 25.19 8.37 0.00 2.24
947 1080 1.666872 GGTACGGGCCGATACATGC 60.667 63.158 35.78 13.39 0.00 4.06
954 1087 3.337889 CCGATACATGCCACCGCG 61.338 66.667 0.00 0.00 38.08 6.46
997 1130 2.823147 GCGGCATCAGCTCAGCTT 60.823 61.111 0.00 0.00 36.40 3.74
1404 1552 3.181461 CCTACAACATCCTCATGTCCTCC 60.181 52.174 0.00 0.00 42.89 4.30
1669 1817 0.682852 AAGGGTGTTCGACGGAATGA 59.317 50.000 0.00 0.00 34.05 2.57
1698 1846 1.546476 GATGTCGTGTCCTGGAACTCT 59.454 52.381 0.00 0.00 0.00 3.24
1740 1888 2.685999 GGGCAATGGGAAGAGGCT 59.314 61.111 0.00 0.00 0.00 4.58
1746 1894 1.064166 CAATGGGAAGAGGCTGTGGAT 60.064 52.381 0.00 0.00 0.00 3.41
1762 1910 5.485620 CTGTGGATCTGTTTCAGAAGATGA 58.514 41.667 3.58 0.00 44.04 2.92
1764 1912 4.874966 GTGGATCTGTTTCAGAAGATGAGG 59.125 45.833 3.58 0.00 44.04 3.86
1845 1993 2.511373 CGCGACCATAAGGCAGCA 60.511 61.111 0.00 0.00 39.65 4.41
1912 2060 0.250295 CGTGACAGTGGTGATTGGGT 60.250 55.000 0.00 0.00 0.00 4.51
1965 2113 0.764369 TCGGGAAGGAGATCCATGGG 60.764 60.000 13.02 0.00 41.55 4.00
1971 2119 1.526917 GGAGATCCATGGGTTGGCG 60.527 63.158 13.02 0.00 46.01 5.69
2160 2311 4.190772 CAGAAGAGGCTTCCAGATTTCTC 58.809 47.826 3.71 0.00 0.00 2.87
2180 2331 5.198207 TCTCCGTGAAATGGTATCTAGTGA 58.802 41.667 0.00 0.00 45.66 3.41
2301 2452 3.951680 AGCATGGGTTTAAAGGTTATCGG 59.048 43.478 0.00 0.00 0.00 4.18
2424 2575 7.455953 TCCTACACTTCAATGATAGCAGGATAT 59.544 37.037 0.00 0.00 0.00 1.63
2451 2602 1.821136 CAAGGGAAAGGATCAGTTGCC 59.179 52.381 9.37 9.37 35.58 4.52
2553 2704 2.301296 CCACTCTGGACTTGTGACTCAT 59.699 50.000 0.00 0.00 40.96 2.90
2671 2822 4.464947 CCTATTAGAAAAGGCAGAAGGGG 58.535 47.826 0.00 0.00 0.00 4.79
2856 3007 2.598394 GCTGCAGGTTGCTGGGAA 60.598 61.111 17.12 0.00 45.31 3.97
2869 3020 1.065854 GCTGGGAAGAGCTAGCAGAAA 60.066 52.381 18.83 0.00 35.95 2.52
2931 3082 0.685458 GGTTGGCATGGGCTGATCTT 60.685 55.000 0.00 0.00 40.87 2.40
2946 3097 4.035208 GCTGATCTTGGTAATGGGTTTACG 59.965 45.833 0.00 0.00 41.01 3.18
2973 3124 3.593442 TTGGTTGGAGACAGGTCAAAT 57.407 42.857 1.84 0.00 44.54 2.32
2993 3144 2.942804 TCCTCTAGCACCAGAGATCTG 58.057 52.381 0.00 2.72 44.11 2.90
3270 3445 8.821147 AACAAGACACGTTTATAACTGACATA 57.179 30.769 0.00 0.00 0.00 2.29
3377 3568 2.153645 TCGCAGCACTCATGATTTTGT 58.846 42.857 0.00 0.00 0.00 2.83
3387 3578 5.301045 CACTCATGATTTTGTATCCATGGCT 59.699 40.000 6.96 0.00 37.55 4.75
3542 3738 6.024552 TGTGATTTGGCTAAATTCTTGTCC 57.975 37.500 9.60 0.00 36.66 4.02
3799 4028 2.224402 GCTCCCTCTCTCTCTCTCTCTC 60.224 59.091 0.00 0.00 0.00 3.20
3956 4331 4.452795 GCCTCTTGACTACTTTTGGAGAAC 59.547 45.833 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.893270 CTTCCCGGTGAACCAATGCA 60.893 55.000 0.00 0.00 35.14 3.96
1 2 1.883021 CTTCCCGGTGAACCAATGC 59.117 57.895 0.00 0.00 35.14 3.56
2 3 0.893270 TGCTTCCCGGTGAACCAATG 60.893 55.000 0.00 0.00 35.14 2.82
3 4 0.039618 ATGCTTCCCGGTGAACCAAT 59.960 50.000 0.00 0.00 35.14 3.16
4 5 0.608035 GATGCTTCCCGGTGAACCAA 60.608 55.000 0.00 0.00 35.14 3.67
5 6 1.002624 GATGCTTCCCGGTGAACCA 60.003 57.895 0.00 1.92 35.14 3.67
6 7 1.749258 GGATGCTTCCCGGTGAACC 60.749 63.158 7.41 0.00 35.84 3.62
7 8 1.026718 CAGGATGCTTCCCGGTGAAC 61.027 60.000 14.77 0.29 43.76 3.18
8 9 1.299648 CAGGATGCTTCCCGGTGAA 59.700 57.895 14.77 2.72 43.76 3.18
9 10 0.616395 TACAGGATGCTTCCCGGTGA 60.616 55.000 14.77 0.00 43.76 4.02
10 11 0.251916 TTACAGGATGCTTCCCGGTG 59.748 55.000 14.77 9.50 43.76 4.94
11 12 1.213296 ATTACAGGATGCTTCCCGGT 58.787 50.000 14.77 15.00 43.76 5.28
12 13 1.949525 CAATTACAGGATGCTTCCCGG 59.050 52.381 14.77 10.17 43.76 5.73
13 14 2.643551 ACAATTACAGGATGCTTCCCG 58.356 47.619 14.77 7.65 43.76 5.14
14 15 5.885912 TCTTTACAATTACAGGATGCTTCCC 59.114 40.000 14.77 0.00 43.76 3.97
15 16 7.336931 TCTTCTTTACAATTACAGGATGCTTCC 59.663 37.037 10.66 10.66 42.53 3.46
16 17 8.268850 TCTTCTTTACAATTACAGGATGCTTC 57.731 34.615 0.00 0.00 42.53 3.86
17 18 8.814038 ATCTTCTTTACAATTACAGGATGCTT 57.186 30.769 0.00 0.00 42.53 3.91
18 19 8.814038 AATCTTCTTTACAATTACAGGATGCT 57.186 30.769 0.00 0.00 42.53 3.79
19 20 9.294030 CAAATCTTCTTTACAATTACAGGATGC 57.706 33.333 0.00 0.00 42.53 3.91
22 23 9.010029 GGACAAATCTTCTTTACAATTACAGGA 57.990 33.333 0.00 0.00 0.00 3.86
23 24 8.792633 TGGACAAATCTTCTTTACAATTACAGG 58.207 33.333 0.00 0.00 0.00 4.00
24 25 9.612620 GTGGACAAATCTTCTTTACAATTACAG 57.387 33.333 0.00 0.00 0.00 2.74
25 26 8.286800 CGTGGACAAATCTTCTTTACAATTACA 58.713 33.333 0.00 0.00 0.00 2.41
26 27 8.287503 ACGTGGACAAATCTTCTTTACAATTAC 58.712 33.333 0.00 0.00 0.00 1.89
27 28 8.286800 CACGTGGACAAATCTTCTTTACAATTA 58.713 33.333 7.95 0.00 0.00 1.40
28 29 7.138736 CACGTGGACAAATCTTCTTTACAATT 58.861 34.615 7.95 0.00 0.00 2.32
29 30 6.262273 ACACGTGGACAAATCTTCTTTACAAT 59.738 34.615 21.57 0.00 0.00 2.71
30 31 5.587043 ACACGTGGACAAATCTTCTTTACAA 59.413 36.000 21.57 0.00 0.00 2.41
31 32 5.120399 ACACGTGGACAAATCTTCTTTACA 58.880 37.500 21.57 0.00 0.00 2.41
32 33 5.668558 ACACGTGGACAAATCTTCTTTAC 57.331 39.130 21.57 0.00 0.00 2.01
33 34 7.789273 TTAACACGTGGACAAATCTTCTTTA 57.211 32.000 21.57 1.43 0.00 1.85
34 35 6.687081 TTAACACGTGGACAAATCTTCTTT 57.313 33.333 21.57 2.45 0.00 2.52
35 36 6.262273 ACATTAACACGTGGACAAATCTTCTT 59.738 34.615 21.57 2.66 0.00 2.52
36 37 5.763204 ACATTAACACGTGGACAAATCTTCT 59.237 36.000 21.57 0.00 0.00 2.85
37 38 5.997385 ACATTAACACGTGGACAAATCTTC 58.003 37.500 21.57 0.00 0.00 2.87
38 39 5.529430 TGACATTAACACGTGGACAAATCTT 59.471 36.000 21.57 4.73 0.00 2.40
39 40 5.060506 TGACATTAACACGTGGACAAATCT 58.939 37.500 21.57 1.56 0.00 2.40
40 41 5.351233 TGACATTAACACGTGGACAAATC 57.649 39.130 21.57 10.88 0.00 2.17
41 42 5.957842 ATGACATTAACACGTGGACAAAT 57.042 34.783 21.57 10.38 0.00 2.32
42 43 5.759506 AATGACATTAACACGTGGACAAA 57.240 34.783 21.57 8.45 0.00 2.83
43 44 5.992829 ACTAATGACATTAACACGTGGACAA 59.007 36.000 21.57 10.67 0.00 3.18
44 45 5.543714 ACTAATGACATTAACACGTGGACA 58.456 37.500 21.57 8.36 0.00 4.02
45 46 7.766219 ATACTAATGACATTAACACGTGGAC 57.234 36.000 21.57 2.39 0.00 4.02
46 47 9.872721 TTAATACTAATGACATTAACACGTGGA 57.127 29.630 21.57 4.16 0.00 4.02
48 49 9.632969 GCTTAATACTAATGACATTAACACGTG 57.367 33.333 15.48 15.48 0.00 4.49
49 50 9.373603 TGCTTAATACTAATGACATTAACACGT 57.626 29.630 9.14 6.27 0.00 4.49
71 72 7.768120 GCCTAAATGCTATATCTACTCATGCTT 59.232 37.037 0.00 0.00 0.00 3.91
72 73 7.271511 GCCTAAATGCTATATCTACTCATGCT 58.728 38.462 0.00 0.00 0.00 3.79
73 74 6.481644 GGCCTAAATGCTATATCTACTCATGC 59.518 42.308 0.00 0.00 0.00 4.06
74 75 6.989169 GGGCCTAAATGCTATATCTACTCATG 59.011 42.308 0.84 0.00 0.00 3.07
75 76 6.673978 TGGGCCTAAATGCTATATCTACTCAT 59.326 38.462 4.53 0.00 0.00 2.90
76 77 6.022958 TGGGCCTAAATGCTATATCTACTCA 58.977 40.000 4.53 0.00 0.00 3.41
77 78 6.546428 TGGGCCTAAATGCTATATCTACTC 57.454 41.667 4.53 0.00 0.00 2.59
78 79 6.952605 TTGGGCCTAAATGCTATATCTACT 57.047 37.500 4.53 0.00 0.00 2.57
79 80 6.374613 GGTTTGGGCCTAAATGCTATATCTAC 59.625 42.308 18.08 0.42 0.00 2.59
80 81 6.044989 TGGTTTGGGCCTAAATGCTATATCTA 59.955 38.462 18.08 0.00 0.00 1.98
81 82 5.162991 TGGTTTGGGCCTAAATGCTATATCT 60.163 40.000 18.08 0.00 0.00 1.98
82 83 5.048013 GTGGTTTGGGCCTAAATGCTATATC 60.048 44.000 18.08 1.86 0.00 1.63
83 84 4.832823 GTGGTTTGGGCCTAAATGCTATAT 59.167 41.667 18.08 0.00 0.00 0.86
84 85 4.211920 GTGGTTTGGGCCTAAATGCTATA 58.788 43.478 18.08 0.00 0.00 1.31
85 86 3.031013 GTGGTTTGGGCCTAAATGCTAT 58.969 45.455 18.08 0.00 0.00 2.97
86 87 2.225142 TGTGGTTTGGGCCTAAATGCTA 60.225 45.455 18.08 0.69 0.00 3.49
87 88 1.266178 GTGGTTTGGGCCTAAATGCT 58.734 50.000 18.08 0.00 0.00 3.79
88 89 0.972883 TGTGGTTTGGGCCTAAATGC 59.027 50.000 18.08 11.04 0.00 3.56
89 90 3.007831 ACAATGTGGTTTGGGCCTAAATG 59.992 43.478 18.08 12.66 0.00 2.32
90 91 3.247162 ACAATGTGGTTTGGGCCTAAAT 58.753 40.909 18.08 0.00 0.00 1.40
91 92 2.683768 ACAATGTGGTTTGGGCCTAAA 58.316 42.857 10.69 10.69 0.00 1.85
92 93 2.390225 ACAATGTGGTTTGGGCCTAA 57.610 45.000 4.53 0.00 0.00 2.69
93 94 3.527507 TTACAATGTGGTTTGGGCCTA 57.472 42.857 4.53 0.00 0.00 3.93
94 95 2.390225 TTACAATGTGGTTTGGGCCT 57.610 45.000 4.53 0.00 0.00 5.19
95 96 3.477210 TTTTACAATGTGGTTTGGGCC 57.523 42.857 0.00 0.00 0.00 5.80
96 97 4.447290 ACTTTTTACAATGTGGTTTGGGC 58.553 39.130 0.00 0.00 0.00 5.36
97 98 7.437748 TCATACTTTTTACAATGTGGTTTGGG 58.562 34.615 0.00 0.00 0.00 4.12
135 136 9.815306 TGTCTTCCTACTATCTATGCTTATTCT 57.185 33.333 0.00 0.00 0.00 2.40
139 140 9.197306 TGTTTGTCTTCCTACTATCTATGCTTA 57.803 33.333 0.00 0.00 0.00 3.09
140 141 8.079211 TGTTTGTCTTCCTACTATCTATGCTT 57.921 34.615 0.00 0.00 0.00 3.91
141 142 7.661536 TGTTTGTCTTCCTACTATCTATGCT 57.338 36.000 0.00 0.00 0.00 3.79
142 143 8.604890 GTTTGTTTGTCTTCCTACTATCTATGC 58.395 37.037 0.00 0.00 0.00 3.14
143 144 9.099454 GGTTTGTTTGTCTTCCTACTATCTATG 57.901 37.037 0.00 0.00 0.00 2.23
144 145 8.822805 TGGTTTGTTTGTCTTCCTACTATCTAT 58.177 33.333 0.00 0.00 0.00 1.98
145 146 8.197592 TGGTTTGTTTGTCTTCCTACTATCTA 57.802 34.615 0.00 0.00 0.00 1.98
146 147 7.074653 TGGTTTGTTTGTCTTCCTACTATCT 57.925 36.000 0.00 0.00 0.00 1.98
147 148 7.923414 ATGGTTTGTTTGTCTTCCTACTATC 57.077 36.000 0.00 0.00 0.00 2.08
148 149 9.802039 TTAATGGTTTGTTTGTCTTCCTACTAT 57.198 29.630 0.00 0.00 0.00 2.12
149 150 9.059260 GTTAATGGTTTGTTTGTCTTCCTACTA 57.941 33.333 0.00 0.00 0.00 1.82
150 151 7.558444 TGTTAATGGTTTGTTTGTCTTCCTACT 59.442 33.333 0.00 0.00 0.00 2.57
151 152 7.646526 GTGTTAATGGTTTGTTTGTCTTCCTAC 59.353 37.037 0.00 0.00 0.00 3.18
152 153 7.558444 AGTGTTAATGGTTTGTTTGTCTTCCTA 59.442 33.333 0.00 0.00 0.00 2.94
153 154 6.379988 AGTGTTAATGGTTTGTTTGTCTTCCT 59.620 34.615 0.00 0.00 0.00 3.36
154 155 6.569780 AGTGTTAATGGTTTGTTTGTCTTCC 58.430 36.000 0.00 0.00 0.00 3.46
155 156 9.744468 ATTAGTGTTAATGGTTTGTTTGTCTTC 57.256 29.630 0.00 0.00 0.00 2.87
156 157 9.744468 GATTAGTGTTAATGGTTTGTTTGTCTT 57.256 29.630 0.00 0.00 29.67 3.01
157 158 8.908903 TGATTAGTGTTAATGGTTTGTTTGTCT 58.091 29.630 0.00 0.00 29.67 3.41
158 159 9.522804 TTGATTAGTGTTAATGGTTTGTTTGTC 57.477 29.630 0.00 0.00 29.67 3.18
161 162 8.987890 GCATTGATTAGTGTTAATGGTTTGTTT 58.012 29.630 0.00 0.00 32.59 2.83
162 163 8.147058 TGCATTGATTAGTGTTAATGGTTTGTT 58.853 29.630 0.00 0.00 32.59 2.83
163 164 7.665690 TGCATTGATTAGTGTTAATGGTTTGT 58.334 30.769 0.00 0.00 32.59 2.83
164 165 8.028354 TCTGCATTGATTAGTGTTAATGGTTTG 58.972 33.333 0.00 0.00 32.59 2.93
165 166 8.121305 TCTGCATTGATTAGTGTTAATGGTTT 57.879 30.769 0.00 0.00 32.59 3.27
166 167 7.611467 TCTCTGCATTGATTAGTGTTAATGGTT 59.389 33.333 0.00 0.00 32.59 3.67
167 168 7.112122 TCTCTGCATTGATTAGTGTTAATGGT 58.888 34.615 0.00 0.00 32.59 3.55
168 169 7.558161 TCTCTGCATTGATTAGTGTTAATGG 57.442 36.000 0.00 0.00 32.59 3.16
173 174 7.752239 CGAAAAATCTCTGCATTGATTAGTGTT 59.248 33.333 12.67 7.00 33.17 3.32
174 175 7.246311 CGAAAAATCTCTGCATTGATTAGTGT 58.754 34.615 12.67 0.00 33.17 3.55
175 176 6.195983 GCGAAAAATCTCTGCATTGATTAGTG 59.804 38.462 12.67 6.75 33.17 2.74
176 177 6.094603 AGCGAAAAATCTCTGCATTGATTAGT 59.905 34.615 12.67 6.04 33.17 2.24
177 178 6.493116 AGCGAAAAATCTCTGCATTGATTAG 58.507 36.000 12.67 7.78 33.17 1.73
178 179 6.441093 AGCGAAAAATCTCTGCATTGATTA 57.559 33.333 12.67 0.00 33.17 1.75
179 180 5.320549 AGCGAAAAATCTCTGCATTGATT 57.679 34.783 8.07 8.07 34.75 2.57
180 181 4.495349 CGAGCGAAAAATCTCTGCATTGAT 60.495 41.667 0.00 0.00 0.00 2.57
181 182 3.181517 CGAGCGAAAAATCTCTGCATTGA 60.182 43.478 0.00 0.00 0.00 2.57
182 183 3.096461 CGAGCGAAAAATCTCTGCATTG 58.904 45.455 0.00 0.00 0.00 2.82
183 184 2.096496 CCGAGCGAAAAATCTCTGCATT 59.904 45.455 0.00 0.00 0.00 3.56
184 185 1.667724 CCGAGCGAAAAATCTCTGCAT 59.332 47.619 0.00 0.00 0.00 3.96
185 186 1.078709 CCGAGCGAAAAATCTCTGCA 58.921 50.000 0.00 0.00 0.00 4.41
186 187 1.079503 ACCGAGCGAAAAATCTCTGC 58.920 50.000 0.00 0.00 0.00 4.26
187 188 3.433615 AGAAACCGAGCGAAAAATCTCTG 59.566 43.478 0.00 0.00 0.00 3.35
188 189 3.665190 AGAAACCGAGCGAAAAATCTCT 58.335 40.909 0.00 0.00 0.00 3.10
189 190 3.680458 AGAGAAACCGAGCGAAAAATCTC 59.320 43.478 0.00 0.00 33.87 2.75
190 191 3.665190 AGAGAAACCGAGCGAAAAATCT 58.335 40.909 0.00 0.00 0.00 2.40
191 192 4.406001 AAGAGAAACCGAGCGAAAAATC 57.594 40.909 0.00 0.00 0.00 2.17
192 193 4.753107 TGTAAGAGAAACCGAGCGAAAAAT 59.247 37.500 0.00 0.00 0.00 1.82
193 194 4.121317 TGTAAGAGAAACCGAGCGAAAAA 58.879 39.130 0.00 0.00 0.00 1.94
194 195 3.719924 TGTAAGAGAAACCGAGCGAAAA 58.280 40.909 0.00 0.00 0.00 2.29
195 196 3.374220 TGTAAGAGAAACCGAGCGAAA 57.626 42.857 0.00 0.00 0.00 3.46
196 197 3.587797 ATGTAAGAGAAACCGAGCGAA 57.412 42.857 0.00 0.00 0.00 4.70
197 198 4.707030 TTATGTAAGAGAAACCGAGCGA 57.293 40.909 0.00 0.00 0.00 4.93
198 199 4.863131 AGTTTATGTAAGAGAAACCGAGCG 59.137 41.667 0.00 0.00 34.31 5.03
199 200 6.035112 CAGAGTTTATGTAAGAGAAACCGAGC 59.965 42.308 0.00 0.00 34.31 5.03
200 201 7.091443 ACAGAGTTTATGTAAGAGAAACCGAG 58.909 38.462 0.00 0.00 34.31 4.63
201 202 6.989659 ACAGAGTTTATGTAAGAGAAACCGA 58.010 36.000 0.00 0.00 34.31 4.69
202 203 7.653767 AACAGAGTTTATGTAAGAGAAACCG 57.346 36.000 0.00 0.00 34.31 4.44
207 208 8.774586 GCAGAAAAACAGAGTTTATGTAAGAGA 58.225 33.333 0.00 0.00 31.40 3.10
208 209 8.017946 GGCAGAAAAACAGAGTTTATGTAAGAG 58.982 37.037 0.00 0.00 31.40 2.85
209 210 7.719633 AGGCAGAAAAACAGAGTTTATGTAAGA 59.280 33.333 0.00 0.00 31.40 2.10
210 211 7.875971 AGGCAGAAAAACAGAGTTTATGTAAG 58.124 34.615 0.00 0.00 31.40 2.34
211 212 7.817418 AGGCAGAAAAACAGAGTTTATGTAA 57.183 32.000 0.00 0.00 31.40 2.41
212 213 8.154856 AGTAGGCAGAAAAACAGAGTTTATGTA 58.845 33.333 0.00 0.00 31.40 2.29
213 214 6.998673 AGTAGGCAGAAAAACAGAGTTTATGT 59.001 34.615 0.00 0.00 31.40 2.29
214 215 7.041098 ACAGTAGGCAGAAAAACAGAGTTTATG 60.041 37.037 0.00 0.00 31.81 1.90
215 216 6.998673 ACAGTAGGCAGAAAAACAGAGTTTAT 59.001 34.615 0.00 0.00 0.00 1.40
216 217 6.354130 ACAGTAGGCAGAAAAACAGAGTTTA 58.646 36.000 0.00 0.00 0.00 2.01
217 218 5.193679 ACAGTAGGCAGAAAAACAGAGTTT 58.806 37.500 0.00 0.00 0.00 2.66
218 219 4.781934 ACAGTAGGCAGAAAAACAGAGTT 58.218 39.130 0.00 0.00 0.00 3.01
219 220 4.423625 ACAGTAGGCAGAAAAACAGAGT 57.576 40.909 0.00 0.00 0.00 3.24
220 221 4.816385 TGAACAGTAGGCAGAAAAACAGAG 59.184 41.667 0.00 0.00 0.00 3.35
221 222 4.776349 TGAACAGTAGGCAGAAAAACAGA 58.224 39.130 0.00 0.00 0.00 3.41
222 223 5.499139 TTGAACAGTAGGCAGAAAAACAG 57.501 39.130 0.00 0.00 0.00 3.16
223 224 5.906113 TTTGAACAGTAGGCAGAAAAACA 57.094 34.783 0.00 0.00 0.00 2.83
224 225 6.237835 GCTTTTTGAACAGTAGGCAGAAAAAC 60.238 38.462 0.00 0.00 0.00 2.43
225 226 5.810074 GCTTTTTGAACAGTAGGCAGAAAAA 59.190 36.000 0.00 0.00 0.00 1.94
226 227 5.127031 AGCTTTTTGAACAGTAGGCAGAAAA 59.873 36.000 0.00 0.00 0.00 2.29
227 228 4.644685 AGCTTTTTGAACAGTAGGCAGAAA 59.355 37.500 0.00 0.00 0.00 2.52
228 229 4.207165 AGCTTTTTGAACAGTAGGCAGAA 58.793 39.130 0.00 0.00 0.00 3.02
229 230 3.820557 AGCTTTTTGAACAGTAGGCAGA 58.179 40.909 0.00 0.00 0.00 4.26
230 231 5.689383 TTAGCTTTTTGAACAGTAGGCAG 57.311 39.130 0.00 0.00 0.00 4.85
231 232 6.458232 TTTTAGCTTTTTGAACAGTAGGCA 57.542 33.333 0.00 0.00 0.00 4.75
252 253 8.898761 GTGAATGGTTCCCAACTTTTTATTTTT 58.101 29.630 0.00 0.00 36.95 1.94
253 254 7.500892 GGTGAATGGTTCCCAACTTTTTATTTT 59.499 33.333 0.00 0.00 36.95 1.82
254 255 6.995686 GGTGAATGGTTCCCAACTTTTTATTT 59.004 34.615 0.00 0.00 36.95 1.40
255 256 6.100424 TGGTGAATGGTTCCCAACTTTTTATT 59.900 34.615 0.00 0.00 36.95 1.40
256 257 5.604650 TGGTGAATGGTTCCCAACTTTTTAT 59.395 36.000 0.00 0.00 36.95 1.40
257 258 4.962995 TGGTGAATGGTTCCCAACTTTTTA 59.037 37.500 0.00 0.00 36.95 1.52
258 259 3.777522 TGGTGAATGGTTCCCAACTTTTT 59.222 39.130 0.00 0.00 36.95 1.94
259 260 3.379452 TGGTGAATGGTTCCCAACTTTT 58.621 40.909 0.00 0.00 36.95 2.27
260 261 2.965147 CTGGTGAATGGTTCCCAACTTT 59.035 45.455 0.00 0.00 36.95 2.66
261 262 2.176798 TCTGGTGAATGGTTCCCAACTT 59.823 45.455 0.00 0.00 36.95 2.66
262 263 1.780309 TCTGGTGAATGGTTCCCAACT 59.220 47.619 0.00 0.00 36.95 3.16
263 264 2.286365 TCTGGTGAATGGTTCCCAAC 57.714 50.000 0.00 0.00 36.95 3.77
264 265 3.117322 TCTTTCTGGTGAATGGTTCCCAA 60.117 43.478 0.00 0.00 36.95 4.12
265 266 2.445145 TCTTTCTGGTGAATGGTTCCCA 59.555 45.455 0.00 0.00 38.19 4.37
266 267 3.154827 TCTTTCTGGTGAATGGTTCCC 57.845 47.619 0.00 0.00 31.56 3.97
267 268 4.340950 TGTTTCTTTCTGGTGAATGGTTCC 59.659 41.667 0.00 0.00 31.56 3.62
268 269 5.514274 TGTTTCTTTCTGGTGAATGGTTC 57.486 39.130 0.00 0.00 31.56 3.62
269 270 5.930837 TTGTTTCTTTCTGGTGAATGGTT 57.069 34.783 0.00 0.00 31.56 3.67
270 271 5.598005 TCATTGTTTCTTTCTGGTGAATGGT 59.402 36.000 0.00 0.00 31.56 3.55
271 272 6.088016 TCATTGTTTCTTTCTGGTGAATGG 57.912 37.500 0.00 0.00 31.56 3.16
272 273 5.632347 GCTCATTGTTTCTTTCTGGTGAATG 59.368 40.000 0.00 0.00 31.56 2.67
273 274 5.537674 AGCTCATTGTTTCTTTCTGGTGAAT 59.462 36.000 0.00 0.00 31.56 2.57
274 275 4.889409 AGCTCATTGTTTCTTTCTGGTGAA 59.111 37.500 0.00 0.00 0.00 3.18
275 276 4.464008 AGCTCATTGTTTCTTTCTGGTGA 58.536 39.130 0.00 0.00 0.00 4.02
276 277 4.843220 AGCTCATTGTTTCTTTCTGGTG 57.157 40.909 0.00 0.00 0.00 4.17
277 278 4.500375 GCAAGCTCATTGTTTCTTTCTGGT 60.500 41.667 0.00 0.00 41.29 4.00
278 279 3.985925 GCAAGCTCATTGTTTCTTTCTGG 59.014 43.478 0.00 0.00 41.29 3.86
279 280 4.613944 TGCAAGCTCATTGTTTCTTTCTG 58.386 39.130 0.00 0.00 41.29 3.02
280 281 4.924305 TGCAAGCTCATTGTTTCTTTCT 57.076 36.364 0.00 0.00 41.29 2.52
281 282 5.693104 TGAATGCAAGCTCATTGTTTCTTTC 59.307 36.000 5.43 0.00 41.29 2.62
282 283 5.603596 TGAATGCAAGCTCATTGTTTCTTT 58.396 33.333 5.43 0.00 41.29 2.52
283 284 5.204409 TGAATGCAAGCTCATTGTTTCTT 57.796 34.783 5.43 0.00 41.29 2.52
284 285 4.806330 CTGAATGCAAGCTCATTGTTTCT 58.194 39.130 5.43 0.00 41.29 2.52
285 286 3.367025 GCTGAATGCAAGCTCATTGTTTC 59.633 43.478 5.43 1.34 41.29 2.78
286 287 3.323243 GCTGAATGCAAGCTCATTGTTT 58.677 40.909 5.43 0.00 41.29 2.83
287 288 2.955614 GCTGAATGCAAGCTCATTGTT 58.044 42.857 5.43 0.00 41.29 2.83
288 289 2.649331 GCTGAATGCAAGCTCATTGT 57.351 45.000 5.43 0.00 41.29 2.71
299 300 5.166398 AGCTGAAGTAAATTTGCTGAATGC 58.834 37.500 9.70 11.34 43.25 3.56
300 301 5.803967 GGAGCTGAAGTAAATTTGCTGAATG 59.196 40.000 9.70 2.72 33.18 2.67
301 302 5.392380 CGGAGCTGAAGTAAATTTGCTGAAT 60.392 40.000 9.70 0.00 33.18 2.57
302 303 4.083324 CGGAGCTGAAGTAAATTTGCTGAA 60.083 41.667 9.70 0.77 33.18 3.02
303 304 3.436704 CGGAGCTGAAGTAAATTTGCTGA 59.563 43.478 9.70 0.00 33.18 4.26
304 305 3.751621 CGGAGCTGAAGTAAATTTGCTG 58.248 45.455 9.70 0.00 33.18 4.41
326 327 2.125912 CCGTGGAGTTGAGCGGAG 60.126 66.667 0.00 0.00 46.33 4.63
328 329 2.125912 CTCCGTGGAGTTGAGCGG 60.126 66.667 7.79 0.00 44.95 5.52
329 330 2.811317 GCTCCGTGGAGTTGAGCG 60.811 66.667 16.88 0.00 41.74 5.03
334 335 4.379243 CCGCAGCTCCGTGGAGTT 62.379 66.667 16.88 8.62 43.70 3.01
346 347 0.459237 ACTCAAATCGAGCTCCGCAG 60.459 55.000 8.47 0.00 46.63 5.18
347 348 0.037326 AACTCAAATCGAGCTCCGCA 60.037 50.000 8.47 0.00 46.63 5.69
348 349 0.371645 CAACTCAAATCGAGCTCCGC 59.628 55.000 8.47 0.00 46.63 5.54
349 350 0.371645 GCAACTCAAATCGAGCTCCG 59.628 55.000 8.47 3.57 46.63 4.63
350 351 1.663135 GAGCAACTCAAATCGAGCTCC 59.337 52.381 8.47 0.00 46.63 4.70
351 352 1.663135 GGAGCAACTCAAATCGAGCTC 59.337 52.381 2.73 2.73 46.63 4.09
352 353 1.731720 GGAGCAACTCAAATCGAGCT 58.268 50.000 0.00 0.00 46.63 4.09
353 354 0.371645 CGGAGCAACTCAAATCGAGC 59.628 55.000 0.00 0.00 46.63 5.03
355 356 3.306917 TTACGGAGCAACTCAAATCGA 57.693 42.857 0.00 0.00 31.08 3.59
356 357 4.398549 TTTTACGGAGCAACTCAAATCG 57.601 40.909 0.00 0.00 31.08 3.34
357 358 5.625311 CAGTTTTTACGGAGCAACTCAAATC 59.375 40.000 0.00 0.00 31.08 2.17
358 359 5.519722 CAGTTTTTACGGAGCAACTCAAAT 58.480 37.500 0.00 0.00 31.08 2.32
359 360 4.732355 GCAGTTTTTACGGAGCAACTCAAA 60.732 41.667 0.00 0.00 31.08 2.69
360 361 3.242936 GCAGTTTTTACGGAGCAACTCAA 60.243 43.478 0.00 0.00 31.08 3.02
361 362 2.289547 GCAGTTTTTACGGAGCAACTCA 59.710 45.455 0.00 0.00 31.08 3.41
362 363 2.289547 TGCAGTTTTTACGGAGCAACTC 59.710 45.455 0.00 0.00 0.00 3.01
363 364 2.290641 CTGCAGTTTTTACGGAGCAACT 59.709 45.455 5.25 0.00 0.00 3.16
364 365 2.604614 CCTGCAGTTTTTACGGAGCAAC 60.605 50.000 13.81 0.00 0.00 4.17
365 366 1.606668 CCTGCAGTTTTTACGGAGCAA 59.393 47.619 13.81 0.00 0.00 3.91
366 367 1.202710 TCCTGCAGTTTTTACGGAGCA 60.203 47.619 13.81 0.00 0.00 4.26
367 368 1.464997 CTCCTGCAGTTTTTACGGAGC 59.535 52.381 13.81 0.00 32.56 4.70
368 369 1.464997 GCTCCTGCAGTTTTTACGGAG 59.535 52.381 13.81 11.28 40.68 4.63
369 370 1.519408 GCTCCTGCAGTTTTTACGGA 58.481 50.000 13.81 0.00 39.41 4.69
370 371 0.521735 GGCTCCTGCAGTTTTTACGG 59.478 55.000 13.81 0.00 41.91 4.02
371 372 0.521735 GGGCTCCTGCAGTTTTTACG 59.478 55.000 13.81 0.00 41.91 3.18
372 373 0.521735 CGGGCTCCTGCAGTTTTTAC 59.478 55.000 13.81 0.00 41.91 2.01
373 374 1.241315 GCGGGCTCCTGCAGTTTTTA 61.241 55.000 13.81 0.00 46.81 1.52
374 375 2.564721 GCGGGCTCCTGCAGTTTTT 61.565 57.895 13.81 0.00 46.81 1.94
375 376 2.985847 GCGGGCTCCTGCAGTTTT 60.986 61.111 13.81 0.00 46.81 2.43
397 398 2.493973 GCGACTCAGCTCCCAGAG 59.506 66.667 0.00 0.00 37.87 3.35
398 399 3.443925 CGCGACTCAGCTCCCAGA 61.444 66.667 0.00 0.00 34.40 3.86
399 400 4.504916 CCGCGACTCAGCTCCCAG 62.505 72.222 8.23 0.00 34.40 4.45
402 403 4.200283 CTCCCGCGACTCAGCTCC 62.200 72.222 8.23 0.00 34.40 4.70
403 404 4.863925 GCTCCCGCGACTCAGCTC 62.864 72.222 8.23 0.00 34.40 4.09
406 407 3.408501 CTCTGCTCCCGCGACTCAG 62.409 68.421 8.23 9.45 39.65 3.35
407 408 3.443925 CTCTGCTCCCGCGACTCA 61.444 66.667 8.23 0.00 39.65 3.41
408 409 3.119709 CTCTCTGCTCCCGCGACTC 62.120 68.421 8.23 0.00 39.65 3.36
409 410 3.137459 CTCTCTGCTCCCGCGACT 61.137 66.667 8.23 0.00 39.65 4.18
410 411 2.214181 TTTCTCTCTGCTCCCGCGAC 62.214 60.000 8.23 0.00 39.65 5.19
411 412 1.977009 TTTCTCTCTGCTCCCGCGA 60.977 57.895 8.23 0.00 39.65 5.87
412 413 1.807573 GTTTCTCTCTGCTCCCGCG 60.808 63.158 0.00 0.00 39.65 6.46
413 414 1.448717 GGTTTCTCTCTGCTCCCGC 60.449 63.158 0.00 0.00 0.00 6.13
414 415 1.153745 CGGTTTCTCTCTGCTCCCG 60.154 63.158 0.00 0.00 0.00 5.14
415 416 0.608640 TTCGGTTTCTCTCTGCTCCC 59.391 55.000 0.00 0.00 0.00 4.30
416 417 1.000955 TGTTCGGTTTCTCTCTGCTCC 59.999 52.381 0.00 0.00 0.00 4.70
417 418 2.333014 CTGTTCGGTTTCTCTCTGCTC 58.667 52.381 0.00 0.00 0.00 4.26
418 419 1.001406 CCTGTTCGGTTTCTCTCTGCT 59.999 52.381 0.00 0.00 0.00 4.24
419 420 1.433534 CCTGTTCGGTTTCTCTCTGC 58.566 55.000 0.00 0.00 0.00 4.26
420 421 1.433534 GCCTGTTCGGTTTCTCTCTG 58.566 55.000 0.00 0.00 34.25 3.35
421 422 0.321996 GGCCTGTTCGGTTTCTCTCT 59.678 55.000 0.00 0.00 34.25 3.10
422 423 0.673956 GGGCCTGTTCGGTTTCTCTC 60.674 60.000 0.84 0.00 34.25 3.20
423 424 1.128188 AGGGCCTGTTCGGTTTCTCT 61.128 55.000 4.50 0.00 34.25 3.10
424 425 0.611714 TAGGGCCTGTTCGGTTTCTC 59.388 55.000 18.53 0.00 34.25 2.87
425 426 1.003233 CTTAGGGCCTGTTCGGTTTCT 59.997 52.381 18.53 0.00 34.25 2.52
426 427 1.271217 ACTTAGGGCCTGTTCGGTTTC 60.271 52.381 18.53 0.00 34.25 2.78
427 428 0.769247 ACTTAGGGCCTGTTCGGTTT 59.231 50.000 18.53 0.00 34.25 3.27
428 429 1.648116 TACTTAGGGCCTGTTCGGTT 58.352 50.000 18.53 0.00 34.25 4.44
429 430 1.485066 CATACTTAGGGCCTGTTCGGT 59.515 52.381 18.53 9.80 34.25 4.69
430 431 1.485066 ACATACTTAGGGCCTGTTCGG 59.515 52.381 18.53 3.78 0.00 4.30
431 432 2.093658 ACACATACTTAGGGCCTGTTCG 60.094 50.000 18.53 3.92 0.00 3.95
432 433 3.629142 ACACATACTTAGGGCCTGTTC 57.371 47.619 18.53 0.00 0.00 3.18
433 434 4.382386 AAACACATACTTAGGGCCTGTT 57.618 40.909 18.53 7.03 0.00 3.16
434 435 4.382386 AAAACACATACTTAGGGCCTGT 57.618 40.909 18.53 9.27 0.00 4.00
458 459 1.999071 TTGCAATATTCACGGCCCGC 61.999 55.000 1.23 0.00 0.00 6.13
511 513 7.576750 TTAGCCAATAAATTAGCTATCGTCG 57.423 36.000 4.11 0.00 36.98 5.12
580 685 8.739461 GGTGTTTTAACTTTACGACATCAAAAG 58.261 33.333 0.00 0.00 36.51 2.27
583 688 7.317842 TGGTGTTTTAACTTTACGACATCAA 57.682 32.000 0.00 0.00 0.00 2.57
584 689 6.922247 TGGTGTTTTAACTTTACGACATCA 57.078 33.333 0.00 0.00 0.00 3.07
585 690 7.188157 TGTTGGTGTTTTAACTTTACGACATC 58.812 34.615 0.00 0.00 0.00 3.06
638 743 9.062524 GCCCATAACTGAATATATACACACAAA 57.937 33.333 0.00 0.00 0.00 2.83
641 746 8.792830 ATGCCCATAACTGAATATATACACAC 57.207 34.615 0.00 0.00 0.00 3.82
643 748 9.319143 GAGATGCCCATAACTGAATATATACAC 57.681 37.037 0.00 0.00 0.00 2.90
645 750 9.890629 TTGAGATGCCCATAACTGAATATATAC 57.109 33.333 0.00 0.00 0.00 1.47
647 752 8.051535 CCTTGAGATGCCCATAACTGAATATAT 58.948 37.037 0.00 0.00 0.00 0.86
649 754 6.243900 CCTTGAGATGCCCATAACTGAATAT 58.756 40.000 0.00 0.00 0.00 1.28
650 755 5.624159 CCTTGAGATGCCCATAACTGAATA 58.376 41.667 0.00 0.00 0.00 1.75
651 756 4.467769 CCTTGAGATGCCCATAACTGAAT 58.532 43.478 0.00 0.00 0.00 2.57
652 757 3.889815 CCTTGAGATGCCCATAACTGAA 58.110 45.455 0.00 0.00 0.00 3.02
653 758 2.421952 GCCTTGAGATGCCCATAACTGA 60.422 50.000 0.00 0.00 0.00 3.41
654 759 1.952296 GCCTTGAGATGCCCATAACTG 59.048 52.381 0.00 0.00 0.00 3.16
655 760 1.849039 AGCCTTGAGATGCCCATAACT 59.151 47.619 0.00 0.00 0.00 2.24
656 761 2.355010 AGCCTTGAGATGCCCATAAC 57.645 50.000 0.00 0.00 0.00 1.89
657 762 2.511218 AGAAGCCTTGAGATGCCCATAA 59.489 45.455 0.00 0.00 0.00 1.90
658 763 2.130193 AGAAGCCTTGAGATGCCCATA 58.870 47.619 0.00 0.00 0.00 2.74
659 764 0.924823 AGAAGCCTTGAGATGCCCAT 59.075 50.000 0.00 0.00 0.00 4.00
660 765 0.700564 AAGAAGCCTTGAGATGCCCA 59.299 50.000 0.00 0.00 0.00 5.36
661 766 1.844687 AAAGAAGCCTTGAGATGCCC 58.155 50.000 0.00 0.00 31.91 5.36
662 767 2.159462 CGAAAAGAAGCCTTGAGATGCC 60.159 50.000 0.00 0.00 31.91 4.40
663 768 2.730402 GCGAAAAGAAGCCTTGAGATGC 60.730 50.000 0.00 0.00 31.91 3.91
664 769 3.128465 GCGAAAAGAAGCCTTGAGATG 57.872 47.619 0.00 0.00 31.91 2.90
673 778 5.880341 AGTTTATGTATGGCGAAAAGAAGC 58.120 37.500 0.00 0.00 0.00 3.86
674 779 9.274065 GTTTAGTTTATGTATGGCGAAAAGAAG 57.726 33.333 0.00 0.00 0.00 2.85
675 780 7.958567 CGTTTAGTTTATGTATGGCGAAAAGAA 59.041 33.333 0.00 0.00 0.00 2.52
676 781 7.413219 CCGTTTAGTTTATGTATGGCGAAAAGA 60.413 37.037 0.00 0.00 0.00 2.52
677 782 6.685403 CCGTTTAGTTTATGTATGGCGAAAAG 59.315 38.462 0.00 0.00 0.00 2.27
678 783 6.544622 CCGTTTAGTTTATGTATGGCGAAAA 58.455 36.000 0.00 0.00 0.00 2.29
679 784 5.447548 GCCGTTTAGTTTATGTATGGCGAAA 60.448 40.000 0.00 0.00 31.87 3.46
680 785 4.034279 GCCGTTTAGTTTATGTATGGCGAA 59.966 41.667 0.00 0.00 31.87 4.70
681 786 3.556775 GCCGTTTAGTTTATGTATGGCGA 59.443 43.478 0.00 0.00 31.87 5.54
682 787 3.558418 AGCCGTTTAGTTTATGTATGGCG 59.442 43.478 0.00 0.00 43.87 5.69
683 788 5.756833 ACTAGCCGTTTAGTTTATGTATGGC 59.243 40.000 0.00 0.00 40.41 4.40
684 789 6.202188 CCACTAGCCGTTTAGTTTATGTATGG 59.798 42.308 0.00 0.00 31.64 2.74
685 790 6.982141 TCCACTAGCCGTTTAGTTTATGTATG 59.018 38.462 0.00 0.00 31.64 2.39
686 791 7.116075 TCCACTAGCCGTTTAGTTTATGTAT 57.884 36.000 0.00 0.00 31.64 2.29
687 792 6.528537 TCCACTAGCCGTTTAGTTTATGTA 57.471 37.500 0.00 0.00 31.64 2.29
688 793 5.410355 TCCACTAGCCGTTTAGTTTATGT 57.590 39.130 0.00 0.00 31.64 2.29
689 794 6.148150 TGTTTCCACTAGCCGTTTAGTTTATG 59.852 38.462 0.00 0.00 31.64 1.90
690 795 6.148315 GTGTTTCCACTAGCCGTTTAGTTTAT 59.852 38.462 0.00 0.00 38.61 1.40
691 796 5.466393 GTGTTTCCACTAGCCGTTTAGTTTA 59.534 40.000 0.00 0.00 38.61 2.01
692 797 4.274214 GTGTTTCCACTAGCCGTTTAGTTT 59.726 41.667 0.00 0.00 38.61 2.66
693 798 3.811497 GTGTTTCCACTAGCCGTTTAGTT 59.189 43.478 0.00 0.00 38.61 2.24
694 799 3.396560 GTGTTTCCACTAGCCGTTTAGT 58.603 45.455 0.00 0.00 38.61 2.24
695 800 2.740447 GGTGTTTCCACTAGCCGTTTAG 59.260 50.000 0.00 0.00 41.53 1.85
696 801 2.769893 GGTGTTTCCACTAGCCGTTTA 58.230 47.619 0.00 0.00 41.53 2.01
697 802 1.601166 GGTGTTTCCACTAGCCGTTT 58.399 50.000 0.00 0.00 41.53 3.60
698 803 0.601841 CGGTGTTTCCACTAGCCGTT 60.602 55.000 0.00 0.00 41.53 4.44
699 804 1.005394 CGGTGTTTCCACTAGCCGT 60.005 57.895 0.00 0.00 41.53 5.68
700 805 0.108329 ATCGGTGTTTCCACTAGCCG 60.108 55.000 0.00 0.00 41.53 5.52
701 806 2.973694 TATCGGTGTTTCCACTAGCC 57.026 50.000 0.00 0.00 41.53 3.93
702 807 6.704493 TGAAATATATCGGTGTTTCCACTAGC 59.296 38.462 0.00 0.00 41.53 3.42
703 808 8.833231 ATGAAATATATCGGTGTTTCCACTAG 57.167 34.615 0.00 0.00 41.53 2.57
704 809 9.268268 GAATGAAATATATCGGTGTTTCCACTA 57.732 33.333 0.00 0.00 41.53 2.74
705 810 7.042051 CGAATGAAATATATCGGTGTTTCCACT 60.042 37.037 0.00 0.00 41.53 4.00
706 811 7.069569 CGAATGAAATATATCGGTGTTTCCAC 58.930 38.462 0.00 0.00 41.06 4.02
707 812 6.764085 ACGAATGAAATATATCGGTGTTTCCA 59.236 34.615 0.00 0.00 39.49 3.53
708 813 7.186021 ACGAATGAAATATATCGGTGTTTCC 57.814 36.000 0.00 0.00 39.49 3.13
709 814 9.498307 AAAACGAATGAAATATATCGGTGTTTC 57.502 29.630 0.00 0.00 39.49 2.78
710 815 9.849166 AAAAACGAATGAAATATATCGGTGTTT 57.151 25.926 0.00 0.00 39.49 2.83
711 816 9.498307 GAAAAACGAATGAAATATATCGGTGTT 57.502 29.630 0.00 0.00 35.29 3.32
712 817 8.889717 AGAAAAACGAATGAAATATATCGGTGT 58.110 29.630 0.00 0.00 39.49 4.16
713 818 9.716507 AAGAAAAACGAATGAAATATATCGGTG 57.283 29.630 0.00 0.00 39.49 4.94
723 828 8.270111 GCCGAAATAAAAGAAAAACGAATGAAA 58.730 29.630 0.00 0.00 0.00 2.69
724 829 7.357695 CGCCGAAATAAAAGAAAAACGAATGAA 60.358 33.333 0.00 0.00 0.00 2.57
725 830 6.087028 CGCCGAAATAAAAGAAAAACGAATGA 59.913 34.615 0.00 0.00 0.00 2.57
726 831 6.223589 CGCCGAAATAAAAGAAAAACGAATG 58.776 36.000 0.00 0.00 0.00 2.67
727 832 5.164129 GCGCCGAAATAAAAGAAAAACGAAT 60.164 36.000 0.00 0.00 0.00 3.34
728 833 4.146788 GCGCCGAAATAAAAGAAAAACGAA 59.853 37.500 0.00 0.00 0.00 3.85
729 834 3.664947 GCGCCGAAATAAAAGAAAAACGA 59.335 39.130 0.00 0.00 0.00 3.85
730 835 3.181547 GGCGCCGAAATAAAAGAAAAACG 60.182 43.478 12.58 0.00 0.00 3.60
731 836 3.736759 TGGCGCCGAAATAAAAGAAAAAC 59.263 39.130 23.90 0.00 0.00 2.43
732 837 3.978687 TGGCGCCGAAATAAAAGAAAAA 58.021 36.364 23.90 0.00 0.00 1.94
733 838 3.644884 TGGCGCCGAAATAAAAGAAAA 57.355 38.095 23.90 0.00 0.00 2.29
734 839 3.644884 TTGGCGCCGAAATAAAAGAAA 57.355 38.095 23.90 2.13 0.00 2.52
735 840 3.253677 TCTTTGGCGCCGAAATAAAAGAA 59.746 39.130 28.66 14.25 32.35 2.52
736 841 2.814919 TCTTTGGCGCCGAAATAAAAGA 59.185 40.909 28.66 26.72 32.73 2.52
737 842 3.119990 TCTCTTTGGCGCCGAAATAAAAG 60.120 43.478 28.66 25.07 0.00 2.27
738 843 2.814919 TCTCTTTGGCGCCGAAATAAAA 59.185 40.909 28.66 17.51 0.00 1.52
739 844 2.428491 TCTCTTTGGCGCCGAAATAAA 58.572 42.857 28.66 18.22 0.00 1.40
740 845 2.102070 TCTCTTTGGCGCCGAAATAA 57.898 45.000 28.66 16.28 0.00 1.40
741 846 1.939934 CATCTCTTTGGCGCCGAAATA 59.060 47.619 28.66 18.64 0.00 1.40
742 847 0.734889 CATCTCTTTGGCGCCGAAAT 59.265 50.000 28.66 17.31 0.00 2.17
743 848 0.605319 ACATCTCTTTGGCGCCGAAA 60.605 50.000 28.66 23.00 0.00 3.46
744 849 0.605319 AACATCTCTTTGGCGCCGAA 60.605 50.000 27.34 27.34 0.00 4.30
745 850 1.003839 AACATCTCTTTGGCGCCGA 60.004 52.632 23.90 19.26 0.00 5.54
746 851 1.298157 TGAACATCTCTTTGGCGCCG 61.298 55.000 23.90 7.87 0.00 6.46
747 852 1.098050 ATGAACATCTCTTTGGCGCC 58.902 50.000 22.73 22.73 0.00 6.53
748 853 2.939103 ACTATGAACATCTCTTTGGCGC 59.061 45.455 0.00 0.00 0.00 6.53
749 854 5.109210 TGTACTATGAACATCTCTTTGGCG 58.891 41.667 0.00 0.00 0.00 5.69
750 855 7.183580 GATGTACTATGAACATCTCTTTGGC 57.816 40.000 8.57 0.00 46.33 4.52
905 1034 2.416547 CACCGTTACTTGCAAGATCCAG 59.583 50.000 32.50 18.69 0.00 3.86
921 1050 3.777910 GGCCCGTACCATCACCGT 61.778 66.667 0.00 0.00 0.00 4.83
947 1080 4.778415 CTCTCGGTGTCGCGGTGG 62.778 72.222 6.13 0.00 36.13 4.61
954 1087 0.173708 CCTAGTTGGCTCTCGGTGTC 59.826 60.000 0.00 0.00 0.00 3.67
1065 1213 3.462678 GAGGTGAGGGAGTCGGGC 61.463 72.222 0.00 0.00 0.00 6.13
1669 1817 0.320771 GACACGACATCCTTGTGCCT 60.321 55.000 0.00 0.00 37.77 4.75
1719 1867 1.632018 CCTCTTCCCATTGCCCGGTA 61.632 60.000 0.00 0.00 0.00 4.02
1720 1868 2.677228 CTCTTCCCATTGCCCGGT 59.323 61.111 0.00 0.00 0.00 5.28
1740 1888 5.485620 CTCATCTTCTGAAACAGATCCACA 58.514 41.667 2.30 0.00 40.39 4.17
1746 1894 2.026822 GGCCCTCATCTTCTGAAACAGA 60.027 50.000 0.00 0.00 38.87 3.41
1845 1993 1.220206 CTCCCTGATCAGCGCAACT 59.780 57.895 17.76 0.00 0.00 3.16
1941 2089 1.745264 GATCTCCTTCCCGAGCCTG 59.255 63.158 0.00 0.00 0.00 4.85
2160 2311 4.042398 CGTCACTAGATACCATTTCACGG 58.958 47.826 0.00 0.00 0.00 4.94
2180 2331 5.105473 ACAGTGACATAATTAGGCTGTACGT 60.105 40.000 6.98 0.00 34.47 3.57
2247 2398 4.802051 TGAAGCTCCCGCCCATGC 62.802 66.667 0.00 0.00 36.60 4.06
2301 2452 4.997395 TCAATAAGAGAGTTCCACAGCAAC 59.003 41.667 0.00 0.00 0.00 4.17
2424 2575 2.042842 TGATCCTTTCCCTTGCATTCCA 59.957 45.455 0.00 0.00 0.00 3.53
2553 2704 4.780815 TCTTGTCAAAAAGCTCTTCTCCA 58.219 39.130 0.00 0.00 0.00 3.86
2856 3007 3.432046 GCTTCCTGATTTCTGCTAGCTCT 60.432 47.826 17.23 0.00 0.00 4.09
2931 3082 2.883122 AAGGCGTAAACCCATTACCA 57.117 45.000 0.00 0.00 40.73 3.25
2973 3124 2.942804 CAGATCTCTGGTGCTAGAGGA 58.057 52.381 11.71 1.34 43.48 3.71
2993 3144 4.527564 CGACAGTTCATCCAAAACTTCAC 58.472 43.478 0.00 0.00 34.79 3.18
3270 3445 1.608717 AAGGCAGACGCGGAGAAGAT 61.609 55.000 12.47 0.00 39.92 2.40
3377 3568 5.999600 CACTGTGATAATGAAGCCATGGATA 59.000 40.000 18.40 0.00 32.36 2.59
3387 3578 9.166173 CCTGAAAGTATTCACTGTGATAATGAA 57.834 33.333 11.86 0.00 40.59 2.57
3542 3738 2.094545 AGCTTAAATTTCCCTTGCAGCG 60.095 45.455 0.00 0.00 0.00 5.18
3610 3806 5.064558 TGTTAAAACATGCGGTAAGAGGAA 58.935 37.500 0.00 0.00 33.17 3.36
3719 3925 7.051000 AGAGAGATTTTTATGACTAACAGGGC 58.949 38.462 0.00 0.00 0.00 5.19
3799 4028 2.950309 CCCAGGATCTTGATCTTGCTTG 59.050 50.000 14.70 4.58 0.00 4.01
3956 4331 5.749462 AGATGTTGGTTGGAAATAGGAGAG 58.251 41.667 0.00 0.00 0.00 3.20
4025 4762 6.071616 TGCATGGGTAGAATAAACCTTGAAAC 60.072 38.462 0.00 0.00 37.18 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.