Multiple sequence alignment - TraesCS7D01G455300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G455300 chr7D 100.000 2877 0 0 1 2877 574062864 574065740 0.000000e+00 5313.0
1 TraesCS7D01G455300 chr7D 88.787 1195 107 11 1421 2604 573924410 573925588 0.000000e+00 1439.0
2 TraesCS7D01G455300 chr7D 85.816 423 47 8 995 1409 573923870 573924287 1.220000e-118 436.0
3 TraesCS7D01G455300 chr7D 83.673 392 42 12 2066 2449 574101258 574101635 1.640000e-92 350.0
4 TraesCS7D01G455300 chr7D 86.452 310 36 6 161 466 574231853 574231546 4.590000e-88 335.0
5 TraesCS7D01G455300 chr7D 94.118 119 6 1 1 118 137764552 137764434 2.280000e-41 180.0
6 TraesCS7D01G455300 chr7D 100.000 37 0 0 2615 2651 473644535 473644571 5.140000e-08 69.4
7 TraesCS7D01G455300 chr7D 100.000 37 0 0 2615 2651 573925629 573925665 5.140000e-08 69.4
8 TraesCS7D01G455300 chr7B 91.278 1135 80 7 1451 2580 633217973 633216853 0.000000e+00 1530.0
9 TraesCS7D01G455300 chr7B 89.094 1192 102 11 1424 2604 632861244 632860070 0.000000e+00 1456.0
10 TraesCS7D01G455300 chr7B 84.098 1220 116 36 245 1414 633219370 633218179 0.000000e+00 1107.0
11 TraesCS7D01G455300 chr7B 86.618 411 41 9 983 1384 632861796 632861391 2.630000e-120 442.0
12 TraesCS7D01G455300 chr7B 89.349 338 27 4 2243 2574 632996883 632997217 1.590000e-112 416.0
13 TraesCS7D01G455300 chr7B 84.740 308 40 5 163 466 633895956 633896260 4.660000e-78 302.0
14 TraesCS7D01G455300 chr7B 82.979 282 40 7 160 436 633759489 633759767 6.160000e-62 248.0
15 TraesCS7D01G455300 chr7B 100.000 35 0 0 2617 2651 633216624 633216590 6.650000e-07 65.8
16 TraesCS7D01G455300 chr7B 90.698 43 4 0 2615 2657 632860029 632859987 1.110000e-04 58.4
17 TraesCS7D01G455300 chr7B 96.875 32 1 0 2618 2649 632997461 632997430 1.000000e-03 54.7
18 TraesCS7D01G455300 chr7A 91.606 965 72 4 1465 2421 663763935 663762972 0.000000e+00 1325.0
19 TraesCS7D01G455300 chr7A 86.137 844 67 25 644 1474 663768432 663767626 0.000000e+00 865.0
20 TraesCS7D01G455300 chr7A 92.432 185 6 7 2657 2835 730830675 730830857 1.020000e-64 257.0
21 TraesCS7D01G455300 chr7A 87.349 166 17 3 256 419 664004168 664004331 1.360000e-43 187.0
22 TraesCS7D01G455300 chr7A 100.000 37 0 0 2615 2651 522490258 522490222 5.140000e-08 69.4
23 TraesCS7D01G455300 chr2D 95.580 181 7 1 2657 2836 409579187 409579367 3.630000e-74 289.0
24 TraesCS7D01G455300 chr2D 94.262 122 6 1 1 121 116703216 116703095 4.900000e-43 185.0
25 TraesCS7D01G455300 chr2D 92.562 121 8 1 1 120 618681322 618681442 3.810000e-39 172.0
26 TraesCS7D01G455300 chr5D 95.000 180 9 0 2657 2836 30728816 30728637 1.690000e-72 283.0
27 TraesCS7D01G455300 chr4D 92.147 191 9 3 2657 2842 102535230 102535419 6.110000e-67 265.0
28 TraesCS7D01G455300 chr4D 90.984 122 10 1 1 121 484622059 484621938 2.290000e-36 163.0
29 TraesCS7D01G455300 chr1D 93.333 180 11 1 2658 2836 51803591 51803770 6.110000e-67 265.0
30 TraesCS7D01G455300 chr1D 90.816 196 15 3 2647 2842 246105552 246105744 2.840000e-65 259.0
31 TraesCS7D01G455300 chr1D 93.496 123 6 2 1 122 447461684 447461563 6.330000e-42 182.0
32 TraesCS7D01G455300 chr1B 92.308 182 13 1 2658 2839 446483939 446483759 1.020000e-64 257.0
33 TraesCS7D01G455300 chr6B 90.256 195 17 2 2649 2842 702667457 702667650 1.320000e-63 254.0
34 TraesCS7D01G455300 chr6B 93.443 122 7 1 1 121 415785210 415785331 2.280000e-41 180.0
35 TraesCS7D01G455300 chr3D 89.796 196 18 2 2647 2841 429728332 429728138 1.710000e-62 250.0
36 TraesCS7D01G455300 chr3D 93.443 122 7 1 1 121 12168773 12168652 2.280000e-41 180.0
37 TraesCS7D01G455300 chr2B 91.935 124 9 1 1 123 38326008 38325885 3.810000e-39 172.0
38 TraesCS7D01G455300 chr3A 92.373 118 8 1 2 118 712645924 712646041 1.770000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G455300 chr7D 574062864 574065740 2876 False 5313.000000 5313 100.000000 1 2877 1 chr7D.!!$F2 2876
1 TraesCS7D01G455300 chr7D 573923870 573925665 1795 False 648.133333 1439 91.534333 995 2651 3 chr7D.!!$F4 1656
2 TraesCS7D01G455300 chr7B 633216590 633219370 2780 True 900.933333 1530 91.792000 245 2651 3 chr7B.!!$R3 2406
3 TraesCS7D01G455300 chr7B 632859987 632861796 1809 True 652.133333 1456 88.803333 983 2657 3 chr7B.!!$R2 1674
4 TraesCS7D01G455300 chr7A 663762972 663768432 5460 True 1095.000000 1325 88.871500 644 2421 2 chr7A.!!$R2 1777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.108138 ACTTGCTATCCGAGTGCACC 60.108 55.0 14.63 4.1 36.79 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2096 6170 0.392998 AAATCTGCGCCGTCCAAGAT 60.393 50.0 4.18 1.75 0.0 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.254617 GGGTCCGTTTGGGGGTCT 61.255 66.667 0.00 0.00 36.01 3.85
18 19 2.033602 GGTCCGTTTGGGGGTCTG 59.966 66.667 0.00 0.00 36.01 3.51
19 20 2.671963 GTCCGTTTGGGGGTCTGC 60.672 66.667 0.00 0.00 36.01 4.26
20 21 3.172106 TCCGTTTGGGGGTCTGCA 61.172 61.111 0.00 0.00 36.01 4.41
21 22 2.035626 CCGTTTGGGGGTCTGCAT 59.964 61.111 0.00 0.00 0.00 3.96
22 23 2.046285 CCGTTTGGGGGTCTGCATC 61.046 63.158 0.00 0.00 0.00 3.91
23 24 1.002134 CGTTTGGGGGTCTGCATCT 60.002 57.895 0.00 0.00 0.00 2.90
24 25 0.251916 CGTTTGGGGGTCTGCATCTA 59.748 55.000 0.00 0.00 0.00 1.98
25 26 1.134098 CGTTTGGGGGTCTGCATCTAT 60.134 52.381 0.00 0.00 0.00 1.98
26 27 2.301346 GTTTGGGGGTCTGCATCTATG 58.699 52.381 0.00 0.00 0.00 2.23
38 39 2.645730 CATCTATGCTAGTCCTCGCC 57.354 55.000 0.00 0.00 0.00 5.54
39 40 1.135546 CATCTATGCTAGTCCTCGCCG 60.136 57.143 0.00 0.00 0.00 6.46
40 41 0.889638 TCTATGCTAGTCCTCGCCGG 60.890 60.000 0.00 0.00 0.00 6.13
41 42 2.479412 CTATGCTAGTCCTCGCCGGC 62.479 65.000 19.07 19.07 0.00 6.13
49 50 4.763646 CCTCGCCGGCCCGTAAAA 62.764 66.667 23.46 0.00 0.00 1.52
50 51 3.192922 CTCGCCGGCCCGTAAAAG 61.193 66.667 23.46 3.72 0.00 2.27
60 61 3.553597 CCGTAAAAGCGGTTTTGCA 57.446 47.368 30.63 14.59 46.11 4.08
61 62 1.125270 CCGTAAAAGCGGTTTTGCAC 58.875 50.000 30.63 22.26 46.11 4.57
62 63 0.767687 CGTAAAAGCGGTTTTGCACG 59.232 50.000 30.63 27.65 37.94 5.34
63 64 1.595003 CGTAAAAGCGGTTTTGCACGA 60.595 47.619 29.94 13.37 38.95 4.35
64 65 2.452105 GTAAAAGCGGTTTTGCACGAA 58.548 42.857 30.01 10.58 37.96 3.85
65 66 1.273688 AAAAGCGGTTTTGCACGAAC 58.726 45.000 23.38 1.28 34.44 3.95
66 67 0.454196 AAAGCGGTTTTGCACGAACT 59.546 45.000 6.80 0.00 37.31 3.01
67 68 0.248458 AAGCGGTTTTGCACGAACTG 60.248 50.000 13.95 13.95 37.31 3.16
75 76 3.085010 GCACGAACTGCAAACGCG 61.085 61.111 3.53 3.53 46.29 6.01
76 77 2.323105 CACGAACTGCAAACGCGT 59.677 55.556 5.58 5.58 35.33 6.01
77 78 1.297304 CACGAACTGCAAACGCGTT 60.297 52.632 20.79 20.79 32.27 4.84
78 79 0.859788 CACGAACTGCAAACGCGTTT 60.860 50.000 30.36 30.36 32.27 3.60
79 80 0.179184 ACGAACTGCAAACGCGTTTT 60.179 45.000 33.05 19.44 0.00 2.43
80 81 0.223513 CGAACTGCAAACGCGTTTTG 59.776 50.000 33.05 26.38 46.57 2.44
85 86 2.920126 CAAACGCGTTTTGCAGGC 59.080 55.556 33.05 0.00 46.97 4.85
86 87 2.279186 AAACGCGTTTTGCAGGCC 60.279 55.556 30.36 0.00 46.97 5.19
87 88 4.622456 AACGCGTTTTGCAGGCCG 62.622 61.111 20.79 0.00 46.97 6.13
92 93 4.279043 GTTTTGCAGGCCGGCGTT 62.279 61.111 21.08 7.73 36.28 4.84
93 94 3.532155 TTTTGCAGGCCGGCGTTT 61.532 55.556 21.08 4.66 36.28 3.60
94 95 3.082579 TTTTGCAGGCCGGCGTTTT 62.083 52.632 21.08 1.65 36.28 2.43
95 96 3.781770 TTTGCAGGCCGGCGTTTTG 62.782 57.895 21.08 16.04 36.28 2.44
114 115 3.450028 CAGGGTCTGCTAGAGTTGC 57.550 57.895 0.00 0.00 0.00 4.17
115 116 0.901124 CAGGGTCTGCTAGAGTTGCT 59.099 55.000 0.00 0.00 0.00 3.91
116 117 1.134848 CAGGGTCTGCTAGAGTTGCTC 60.135 57.143 0.00 0.00 0.00 4.26
117 118 1.190643 GGGTCTGCTAGAGTTGCTCT 58.809 55.000 4.02 4.02 43.83 4.09
118 119 2.024846 AGGGTCTGCTAGAGTTGCTCTA 60.025 50.000 0.00 5.84 41.50 2.43
119 120 2.761208 GGGTCTGCTAGAGTTGCTCTAA 59.239 50.000 7.22 0.00 41.74 2.10
120 121 3.181480 GGGTCTGCTAGAGTTGCTCTAAG 60.181 52.174 7.22 3.73 41.74 2.18
121 122 3.181480 GGTCTGCTAGAGTTGCTCTAAGG 60.181 52.174 7.22 0.00 41.74 2.69
122 123 3.027412 TCTGCTAGAGTTGCTCTAAGGG 58.973 50.000 7.22 0.00 41.74 3.95
123 124 2.763448 CTGCTAGAGTTGCTCTAAGGGT 59.237 50.000 7.22 0.00 41.74 4.34
124 125 3.173965 TGCTAGAGTTGCTCTAAGGGTT 58.826 45.455 7.22 0.00 41.74 4.11
125 126 3.195825 TGCTAGAGTTGCTCTAAGGGTTC 59.804 47.826 7.22 0.00 41.74 3.62
126 127 3.735514 GCTAGAGTTGCTCTAAGGGTTCG 60.736 52.174 7.22 0.00 41.74 3.95
127 128 2.526432 AGAGTTGCTCTAAGGGTTCGA 58.474 47.619 0.00 0.00 39.28 3.71
128 129 2.231721 AGAGTTGCTCTAAGGGTTCGAC 59.768 50.000 0.00 0.00 39.28 4.20
129 130 1.275573 AGTTGCTCTAAGGGTTCGACC 59.724 52.381 0.00 0.00 37.60 4.79
138 139 4.821177 GGTTCGACCCCGACATAC 57.179 61.111 0.00 0.00 45.50 2.39
139 140 1.142531 GGTTCGACCCCGACATACC 59.857 63.158 0.00 0.00 45.50 2.73
140 141 1.606885 GGTTCGACCCCGACATACCA 61.607 60.000 0.00 0.00 45.50 3.25
141 142 0.247185 GTTCGACCCCGACATACCAA 59.753 55.000 0.00 0.00 45.50 3.67
142 143 0.247185 TTCGACCCCGACATACCAAC 59.753 55.000 0.00 0.00 45.50 3.77
143 144 1.153509 CGACCCCGACATACCAACC 60.154 63.158 0.00 0.00 38.22 3.77
144 145 1.890625 CGACCCCGACATACCAACCA 61.891 60.000 0.00 0.00 38.22 3.67
145 146 0.392060 GACCCCGACATACCAACCAC 60.392 60.000 0.00 0.00 0.00 4.16
146 147 1.128809 ACCCCGACATACCAACCACA 61.129 55.000 0.00 0.00 0.00 4.17
147 148 0.392461 CCCCGACATACCAACCACAG 60.392 60.000 0.00 0.00 0.00 3.66
148 149 0.611200 CCCGACATACCAACCACAGA 59.389 55.000 0.00 0.00 0.00 3.41
149 150 1.209504 CCCGACATACCAACCACAGAT 59.790 52.381 0.00 0.00 0.00 2.90
150 151 2.355716 CCCGACATACCAACCACAGATT 60.356 50.000 0.00 0.00 0.00 2.40
151 152 3.343617 CCGACATACCAACCACAGATTT 58.656 45.455 0.00 0.00 0.00 2.17
152 153 4.509616 CCGACATACCAACCACAGATTTA 58.490 43.478 0.00 0.00 0.00 1.40
153 154 4.570772 CCGACATACCAACCACAGATTTAG 59.429 45.833 0.00 0.00 0.00 1.85
154 155 4.570772 CGACATACCAACCACAGATTTAGG 59.429 45.833 0.00 0.00 0.00 2.69
155 156 4.855340 ACATACCAACCACAGATTTAGGG 58.145 43.478 0.00 0.00 0.00 3.53
156 157 4.291249 ACATACCAACCACAGATTTAGGGT 59.709 41.667 0.00 0.00 34.43 4.34
157 158 3.434940 ACCAACCACAGATTTAGGGTC 57.565 47.619 0.00 0.00 32.01 4.46
158 159 2.290071 ACCAACCACAGATTTAGGGTCG 60.290 50.000 0.00 0.00 32.01 4.79
159 160 2.290071 CCAACCACAGATTTAGGGTCGT 60.290 50.000 0.00 0.00 32.01 4.34
160 161 3.000727 CAACCACAGATTTAGGGTCGTC 58.999 50.000 0.00 0.00 32.01 4.20
161 162 2.537143 ACCACAGATTTAGGGTCGTCT 58.463 47.619 0.00 0.00 0.00 4.18
162 163 2.904434 ACCACAGATTTAGGGTCGTCTT 59.096 45.455 0.00 0.00 0.00 3.01
163 164 3.326880 ACCACAGATTTAGGGTCGTCTTT 59.673 43.478 0.00 0.00 0.00 2.52
164 165 4.202430 ACCACAGATTTAGGGTCGTCTTTT 60.202 41.667 0.00 0.00 0.00 2.27
165 166 4.760204 CCACAGATTTAGGGTCGTCTTTTT 59.240 41.667 0.00 0.00 0.00 1.94
166 167 5.935789 CCACAGATTTAGGGTCGTCTTTTTA 59.064 40.000 0.00 0.00 0.00 1.52
167 168 6.428771 CCACAGATTTAGGGTCGTCTTTTTAA 59.571 38.462 0.00 0.00 0.00 1.52
168 169 7.120726 CCACAGATTTAGGGTCGTCTTTTTAAT 59.879 37.037 0.00 0.00 0.00 1.40
169 170 8.512138 CACAGATTTAGGGTCGTCTTTTTAATT 58.488 33.333 0.00 0.00 0.00 1.40
170 171 9.074576 ACAGATTTAGGGTCGTCTTTTTAATTT 57.925 29.630 0.00 0.00 0.00 1.82
196 197 8.831715 ATTTTCATTTTATTCTTTCCTTGCGT 57.168 26.923 0.00 0.00 0.00 5.24
197 198 9.921637 ATTTTCATTTTATTCTTTCCTTGCGTA 57.078 25.926 0.00 0.00 0.00 4.42
198 199 9.921637 TTTTCATTTTATTCTTTCCTTGCGTAT 57.078 25.926 0.00 0.00 0.00 3.06
199 200 9.921637 TTTCATTTTATTCTTTCCTTGCGTATT 57.078 25.926 0.00 0.00 0.00 1.89
200 201 9.921637 TTCATTTTATTCTTTCCTTGCGTATTT 57.078 25.926 0.00 0.00 0.00 1.40
201 202 9.352784 TCATTTTATTCTTTCCTTGCGTATTTG 57.647 29.630 0.00 0.00 0.00 2.32
202 203 9.139174 CATTTTATTCTTTCCTTGCGTATTTGT 57.861 29.630 0.00 0.00 0.00 2.83
204 205 9.834628 TTTTATTCTTTCCTTGCGTATTTGTAG 57.165 29.630 0.00 0.00 0.00 2.74
205 206 8.556213 TTATTCTTTCCTTGCGTATTTGTAGT 57.444 30.769 0.00 0.00 0.00 2.73
206 207 5.856126 TCTTTCCTTGCGTATTTGTAGTG 57.144 39.130 0.00 0.00 0.00 2.74
207 208 4.153475 TCTTTCCTTGCGTATTTGTAGTGC 59.847 41.667 0.00 0.00 0.00 4.40
208 209 3.046968 TCCTTGCGTATTTGTAGTGCA 57.953 42.857 0.00 0.00 0.00 4.57
209 210 2.739913 TCCTTGCGTATTTGTAGTGCAC 59.260 45.455 9.40 9.40 34.90 4.57
210 211 2.482336 CCTTGCGTATTTGTAGTGCACA 59.518 45.455 21.04 1.84 34.90 4.57
211 212 3.479006 CTTGCGTATTTGTAGTGCACAC 58.521 45.455 21.04 15.19 36.69 3.82
212 213 2.761559 TGCGTATTTGTAGTGCACACT 58.238 42.857 21.04 8.57 45.02 3.55
213 214 3.135225 TGCGTATTTGTAGTGCACACTT 58.865 40.909 21.04 0.05 42.54 3.16
214 215 3.059257 TGCGTATTTGTAGTGCACACTTG 60.059 43.478 21.04 0.00 42.54 3.16
224 225 3.442996 GCACACTTGCTATCCGAGT 57.557 52.632 0.00 0.00 46.17 4.18
227 228 3.441244 CACTTGCTATCCGAGTGCA 57.559 52.632 0.00 0.00 46.17 4.57
228 229 1.002366 CACTTGCTATCCGAGTGCAC 58.998 55.000 9.40 9.40 46.17 4.57
229 230 0.108138 ACTTGCTATCCGAGTGCACC 60.108 55.000 14.63 4.10 36.79 5.01
230 231 0.108186 CTTGCTATCCGAGTGCACCA 60.108 55.000 14.63 0.00 36.37 4.17
231 232 0.391130 TTGCTATCCGAGTGCACCAC 60.391 55.000 14.63 7.42 36.37 4.16
232 233 1.878522 GCTATCCGAGTGCACCACG 60.879 63.158 21.62 21.62 39.64 4.94
233 234 1.878522 CTATCCGAGTGCACCACGC 60.879 63.158 22.68 7.37 39.64 5.34
234 235 3.365291 TATCCGAGTGCACCACGCC 62.365 63.158 22.68 5.00 41.33 5.68
248 249 4.787286 CGCCGGCCACCCATTGTA 62.787 66.667 23.46 0.00 0.00 2.41
264 265 7.648908 CACCCATTGTACAACTATAATTGCATG 59.351 37.037 11.22 0.45 32.47 4.06
275 276 0.737219 AATTGCATGCTCGCTCCTTC 59.263 50.000 20.33 0.00 0.00 3.46
277 278 3.934684 GCATGCTCGCTCCTTCGC 61.935 66.667 11.37 0.00 0.00 4.70
290 291 1.400142 TCCTTCGCGTAAATTGCATGG 59.600 47.619 5.77 0.00 0.00 3.66
293 294 0.730265 TCGCGTAAATTGCATGGGTC 59.270 50.000 5.77 0.00 0.00 4.46
294 295 0.449786 CGCGTAAATTGCATGGGTCA 59.550 50.000 0.00 0.00 0.00 4.02
310 311 0.881600 GTCACACCCCACACGTAACC 60.882 60.000 0.00 0.00 0.00 2.85
311 312 1.146485 CACACCCCACACGTAACCA 59.854 57.895 0.00 0.00 0.00 3.67
325 326 0.548989 TAACCACAGGTGCACCAACT 59.451 50.000 36.39 14.89 35.34 3.16
327 328 1.152984 CCACAGGTGCACCAACTCA 60.153 57.895 36.39 0.00 38.89 3.41
349 350 3.692593 ACACGCAACTTGGTTTTCTTACT 59.307 39.130 0.00 0.00 0.00 2.24
353 354 6.748198 CACGCAACTTGGTTTTCTTACTTTTA 59.252 34.615 0.00 0.00 0.00 1.52
391 393 1.942677 TTTTCACCGTGACACGACAT 58.057 45.000 28.83 11.24 46.05 3.06
395 397 1.000394 TCACCGTGACACGACATCAAT 60.000 47.619 28.83 2.77 46.05 2.57
410 412 4.592942 ACATCAATACACTCATGCAACCT 58.407 39.130 0.00 0.00 0.00 3.50
413 415 6.658816 ACATCAATACACTCATGCAACCTTTA 59.341 34.615 0.00 0.00 0.00 1.85
414 416 7.340232 ACATCAATACACTCATGCAACCTTTAT 59.660 33.333 0.00 0.00 0.00 1.40
415 417 7.701539 TCAATACACTCATGCAACCTTTATT 57.298 32.000 0.00 0.00 0.00 1.40
416 418 8.121305 TCAATACACTCATGCAACCTTTATTT 57.879 30.769 0.00 0.00 0.00 1.40
417 419 8.584157 TCAATACACTCATGCAACCTTTATTTT 58.416 29.630 0.00 0.00 0.00 1.82
422 424 9.777297 ACACTCATGCAACCTTTATTTTAAATT 57.223 25.926 0.00 0.00 0.00 1.82
424 426 9.435688 ACTCATGCAACCTTTATTTTAAATTCC 57.564 29.630 0.00 0.00 0.00 3.01
470 495 2.509336 CCCCGAGCGCAACTACAG 60.509 66.667 11.47 0.00 0.00 2.74
472 497 1.805945 CCCGAGCGCAACTACAGAC 60.806 63.158 11.47 0.00 0.00 3.51
482 507 0.944311 AACTACAGACGCCGCAACAG 60.944 55.000 0.00 0.00 0.00 3.16
495 522 1.800586 CGCAACAGACATGCAACTAGT 59.199 47.619 0.00 0.00 44.01 2.57
499 526 1.003580 ACAGACATGCAACTAGTGGGG 59.996 52.381 0.00 0.00 0.00 4.96
500 527 0.620556 AGACATGCAACTAGTGGGGG 59.379 55.000 0.00 0.00 0.00 5.40
503 530 1.271926 ACATGCAACTAGTGGGGGTTC 60.272 52.381 0.00 0.00 0.00 3.62
521 549 8.714906 TGGGGGTTCTTTTTATAAATTTTCACA 58.285 29.630 0.00 0.00 0.00 3.58
522 550 9.733556 GGGGGTTCTTTTTATAAATTTTCACAT 57.266 29.630 0.00 0.00 0.00 3.21
550 578 6.525628 GGTTACTAGCGTGCCTTTTATTTTTC 59.474 38.462 0.00 0.00 0.00 2.29
551 579 5.959618 ACTAGCGTGCCTTTTATTTTTCT 57.040 34.783 0.00 0.00 0.00 2.52
552 580 8.445493 GTTACTAGCGTGCCTTTTATTTTTCTA 58.555 33.333 0.00 0.00 0.00 2.10
553 581 7.443259 ACTAGCGTGCCTTTTATTTTTCTAA 57.557 32.000 0.00 0.00 0.00 2.10
557 585 8.072238 AGCGTGCCTTTTATTTTTCTAAAAAG 57.928 30.769 6.74 0.00 40.78 2.27
657 689 1.666011 CTAGTCACACGGCACACCT 59.334 57.895 0.00 0.00 0.00 4.00
665 697 4.506654 GTCACACGGCACACCTAATAATAG 59.493 45.833 0.00 0.00 0.00 1.73
668 700 5.234329 CACACGGCACACCTAATAATAGAAG 59.766 44.000 0.00 0.00 0.00 2.85
670 702 5.462398 CACGGCACACCTAATAATAGAAGAC 59.538 44.000 0.00 0.00 0.00 3.01
674 706 5.696724 GCACACCTAATAATAGAAGACGCAT 59.303 40.000 0.00 0.00 0.00 4.73
676 708 7.545965 GCACACCTAATAATAGAAGACGCATAT 59.454 37.037 0.00 0.00 0.00 1.78
756 791 3.594603 TCAGACTTTCCTCGGAATGAC 57.405 47.619 15.89 10.86 34.60 3.06
763 800 4.154195 ACTTTCCTCGGAATGACGATTTTG 59.846 41.667 15.89 0.00 42.62 2.44
767 804 4.517453 TCCTCGGAATGACGATTTTGTTTT 59.483 37.500 0.00 0.00 42.62 2.43
787 824 1.002430 TGGAAAGCTCTCGATGTTGCT 59.998 47.619 0.00 0.00 37.37 3.91
851 888 3.733344 ATCCAACGGCCATCGACGG 62.733 63.158 2.24 0.00 42.43 4.79
886 923 3.561241 TGCCGCACAACACCCCTA 61.561 61.111 0.00 0.00 0.00 3.53
904 948 3.159984 GCGAACAGCGAACAGAGG 58.840 61.111 0.00 0.00 44.57 3.69
905 949 3.016474 GCGAACAGCGAACAGAGGC 62.016 63.158 0.00 0.00 44.57 4.70
921 965 2.046507 GCACAGAGGCACAGAGGG 60.047 66.667 0.00 0.00 0.00 4.30
930 974 1.219393 GCACAGAGGGAGGCTGTAC 59.781 63.158 0.00 0.00 44.28 2.90
973 1019 3.085533 CGAGTTCTTTCCTCTCTCTGGA 58.914 50.000 0.00 0.00 0.00 3.86
975 1021 3.169908 AGTTCTTTCCTCTCTCTGGACC 58.830 50.000 0.00 0.00 32.65 4.46
981 1032 1.034838 CCTCTCTCTGGACCGGAGTG 61.035 65.000 26.44 23.96 38.01 3.51
990 1041 0.673956 GGACCGGAGTGAAAGCTTCC 60.674 60.000 9.46 0.00 0.00 3.46
1005 1056 2.037144 GCTTCCAATCAATCCATGGCT 58.963 47.619 6.96 0.00 34.13 4.75
1015 1066 2.868583 CAATCCATGGCTAGTTGTCTCG 59.131 50.000 6.96 0.00 0.00 4.04
1075 1131 8.014322 TCTTGTGCTTACAAGTTAAATCGTAG 57.986 34.615 16.89 0.00 45.26 3.51
1105 1168 6.626302 TGTTTCTTTTCAATCGAGTTGGTTT 58.374 32.000 0.00 0.00 38.39 3.27
1265 1335 0.253044 GTACAAGCTCTGCATCCCCA 59.747 55.000 0.00 0.00 0.00 4.96
1381 1454 2.017559 GCGTCCTCGGCTCCAAGTAT 62.018 60.000 0.00 0.00 37.56 2.12
1384 1457 1.067821 GTCCTCGGCTCCAAGTATCAG 59.932 57.143 0.00 0.00 0.00 2.90
1389 1462 1.067821 CGGCTCCAAGTATCAGTCTCC 59.932 57.143 0.00 0.00 0.00 3.71
1394 1467 3.550437 CCAAGTATCAGTCTCCCTTGG 57.450 52.381 0.00 0.00 44.29 3.61
1397 1470 4.256920 CAAGTATCAGTCTCCCTTGGTTG 58.743 47.826 0.00 0.00 31.19 3.77
1411 1484 0.321671 TGGTTGCTTTCCTCCTCTCG 59.678 55.000 0.00 0.00 0.00 4.04
1415 1488 0.891373 TGCTTTCCTCCTCTCGTCTG 59.109 55.000 0.00 0.00 0.00 3.51
1417 1490 0.174617 CTTTCCTCCTCTCGTCTGCC 59.825 60.000 0.00 0.00 0.00 4.85
1418 1491 1.595993 TTTCCTCCTCTCGTCTGCCG 61.596 60.000 0.00 0.00 38.13 5.69
1419 1492 2.438614 CCTCCTCTCGTCTGCCGA 60.439 66.667 0.00 0.00 45.00 5.54
1520 5587 1.500844 CCGTACAAGCTCGTCGAGT 59.499 57.895 22.61 7.08 31.39 4.18
1521 5588 0.109873 CCGTACAAGCTCGTCGAGTT 60.110 55.000 22.61 14.94 31.39 3.01
1544 5611 1.354040 GGATGGAAGATGCGCTATCG 58.646 55.000 9.73 0.00 40.86 2.92
1607 5674 1.472276 CGAAGTCGCCGGAATTCTCG 61.472 60.000 5.05 3.09 43.26 4.04
1666 5740 3.735514 GCCAGATCAGGAACGTTCTACTC 60.736 52.174 26.32 17.21 0.00 2.59
1874 5948 1.754226 ACGCCACCATGTTCAAGTTTT 59.246 42.857 0.00 0.00 0.00 2.43
1875 5949 2.952978 ACGCCACCATGTTCAAGTTTTA 59.047 40.909 0.00 0.00 0.00 1.52
1964 6038 1.658114 CTCGTGGACCACTTCGTCA 59.342 57.895 22.14 0.00 34.24 4.35
2089 6163 2.000447 GATACCACGCTTGTGAAGGTC 59.000 52.381 0.00 0.00 46.91 3.85
2090 6164 0.034337 TACCACGCTTGTGAAGGTCC 59.966 55.000 0.00 0.00 46.91 4.46
2096 6170 0.033504 GCTTGTGAAGGTCCAGTCGA 59.966 55.000 0.00 0.00 0.00 4.20
2110 6184 3.754530 TCGATCTTGGACGGCGCA 61.755 61.111 10.83 0.00 0.00 6.09
2125 6199 1.633171 CGCAGATTTCTTCGAGCCG 59.367 57.895 0.00 0.00 34.64 5.52
2129 6203 0.460987 AGATTTCTTCGAGCCGGCTG 60.461 55.000 38.41 25.52 0.00 4.85
2157 6231 0.794981 CGAGTTCGAGGAGCTCAACG 60.795 60.000 17.19 19.13 39.34 4.10
2166 6240 0.532573 GGAGCTCAACGGTGATCTGA 59.467 55.000 12.31 0.00 30.33 3.27
2283 6357 2.892425 GCAGCGTGAGAATCCCCG 60.892 66.667 0.00 0.00 0.00 5.73
2295 6369 2.629336 AATCCCCGAGATTCTTGAGC 57.371 50.000 2.22 0.00 41.60 4.26
2324 6398 0.923358 ACTATTTCCATGGCCGGGAA 59.077 50.000 21.36 21.36 42.49 3.97
2402 6476 5.175673 CGAGTATGCAATGTTCACATACGAT 59.824 40.000 0.00 0.00 46.85 3.73
2407 6481 8.974408 GTATGCAATGTTCACATACGATAACTA 58.026 33.333 0.00 0.00 37.49 2.24
2461 6535 4.327087 GCAGGCGTCTGAAAATAAAATTGG 59.673 41.667 23.78 0.00 43.49 3.16
2487 6562 6.749923 AGATCATAAGGTTTTGAGTCTTGC 57.250 37.500 0.00 0.00 0.00 4.01
2494 6569 0.662619 TTTTGAGTCTTGCGGTGCTG 59.337 50.000 0.00 0.00 0.00 4.41
2518 6593 6.147985 TGCAAATGAAATTGTACGTGCTACTA 59.852 34.615 4.97 0.00 36.35 1.82
2519 6594 6.464834 GCAAATGAAATTGTACGTGCTACTAC 59.535 38.462 4.97 0.00 36.10 2.73
2525 6600 7.225145 TGAAATTGTACGTGCTACTACTTTGTT 59.775 33.333 4.97 0.00 0.00 2.83
2533 6608 5.742453 CGTGCTACTACTTTGTTATCGTCAT 59.258 40.000 0.00 0.00 0.00 3.06
2536 6611 7.488471 GTGCTACTACTTTGTTATCGTCATCTT 59.512 37.037 0.00 0.00 0.00 2.40
2546 6621 6.908825 TGTTATCGTCATCTTTTCTTTTGGG 58.091 36.000 0.00 0.00 0.00 4.12
2553 6628 4.515191 TCATCTTTTCTTTTGGGTGAGACG 59.485 41.667 0.00 0.00 0.00 4.18
2558 6633 3.319137 TCTTTTGGGTGAGACGATCTG 57.681 47.619 0.00 0.00 0.00 2.90
2561 6636 1.264749 TTGGGTGAGACGATCTGGGG 61.265 60.000 0.00 0.00 0.00 4.96
2577 6652 0.259938 GGGGCATGGAGTTTCTGGAT 59.740 55.000 0.00 0.00 0.00 3.41
2581 6658 2.013563 GCATGGAGTTTCTGGATGCGA 61.014 52.381 0.00 0.00 30.90 5.10
2585 6662 0.723981 GAGTTTCTGGATGCGAGCAC 59.276 55.000 0.00 0.00 0.00 4.40
2586 6663 0.674895 AGTTTCTGGATGCGAGCACC 60.675 55.000 0.00 4.93 0.00 5.01
2604 6681 1.516386 CCGCGCGAGTGAACAGTAT 60.516 57.895 34.63 0.00 46.66 2.12
2605 6682 1.472276 CCGCGCGAGTGAACAGTATC 61.472 60.000 34.63 0.00 46.66 2.24
2606 6683 0.523546 CGCGCGAGTGAACAGTATCT 60.524 55.000 28.94 0.00 46.66 1.98
2607 6684 0.917259 GCGCGAGTGAACAGTATCTG 59.083 55.000 12.10 0.00 37.52 2.90
2608 6685 0.917259 CGCGAGTGAACAGTATCTGC 59.083 55.000 0.00 0.00 34.37 4.26
2609 6686 1.468224 CGCGAGTGAACAGTATCTGCT 60.468 52.381 0.00 0.00 34.37 4.24
2610 6687 2.611518 GCGAGTGAACAGTATCTGCTT 58.388 47.619 0.00 0.00 34.37 3.91
2611 6688 2.346847 GCGAGTGAACAGTATCTGCTTG 59.653 50.000 0.00 0.00 34.37 4.01
2612 6689 2.926200 CGAGTGAACAGTATCTGCTTGG 59.074 50.000 0.00 0.00 34.37 3.61
2651 6918 8.893219 TGAATGTTTTACCAACATGCAAAATA 57.107 26.923 5.98 0.00 41.79 1.40
2658 6925 9.764363 TTTTACCAACATGCAAAATATTGTACA 57.236 25.926 0.00 0.00 38.85 2.90
2659 6926 8.978564 TTACCAACATGCAAAATATTGTACAG 57.021 30.769 0.00 0.00 38.85 2.74
2660 6927 6.991938 ACCAACATGCAAAATATTGTACAGT 58.008 32.000 0.00 0.00 38.85 3.55
2661 6928 7.441017 ACCAACATGCAAAATATTGTACAGTT 58.559 30.769 0.00 0.00 38.85 3.16
2662 6929 7.930865 ACCAACATGCAAAATATTGTACAGTTT 59.069 29.630 0.00 0.00 38.85 2.66
2663 6930 8.222433 CCAACATGCAAAATATTGTACAGTTTG 58.778 33.333 14.29 14.29 38.85 2.93
2664 6931 8.763356 CAACATGCAAAATATTGTACAGTTTGT 58.237 29.630 17.39 6.05 38.85 2.83
2665 6932 8.519492 ACATGCAAAATATTGTACAGTTTGTC 57.481 30.769 17.39 12.86 38.85 3.18
2666 6933 8.359642 ACATGCAAAATATTGTACAGTTTGTCT 58.640 29.630 17.39 8.36 38.85 3.41
2667 6934 9.838975 CATGCAAAATATTGTACAGTTTGTCTA 57.161 29.630 17.39 9.86 38.85 2.59
2677 6944 8.902540 TTGTACAGTTTGTCTAATTCACATCT 57.097 30.769 0.00 0.00 0.00 2.90
2678 6945 9.990360 TTGTACAGTTTGTCTAATTCACATCTA 57.010 29.630 0.00 0.00 0.00 1.98
2679 6946 9.639601 TGTACAGTTTGTCTAATTCACATCTAG 57.360 33.333 0.00 0.00 0.00 2.43
2680 6947 9.856488 GTACAGTTTGTCTAATTCACATCTAGA 57.144 33.333 0.00 0.00 0.00 2.43
2707 6974 8.738645 ATTTTCTAAGGATGTCACATCTAACC 57.261 34.615 17.46 1.26 0.00 2.85
2708 6975 7.496346 TTTCTAAGGATGTCACATCTAACCT 57.504 36.000 17.46 3.80 0.00 3.50
2709 6976 6.716934 TCTAAGGATGTCACATCTAACCTC 57.283 41.667 17.46 0.00 0.00 3.85
2710 6977 6.436027 TCTAAGGATGTCACATCTAACCTCT 58.564 40.000 17.46 2.09 0.00 3.69
2711 6978 5.606348 AAGGATGTCACATCTAACCTCTC 57.394 43.478 17.46 0.00 0.00 3.20
2712 6979 4.614475 AGGATGTCACATCTAACCTCTCA 58.386 43.478 17.46 0.00 0.00 3.27
2713 6980 4.404073 AGGATGTCACATCTAACCTCTCAC 59.596 45.833 17.46 0.00 0.00 3.51
2714 6981 4.160439 GGATGTCACATCTAACCTCTCACA 59.840 45.833 17.46 0.00 0.00 3.58
2715 6982 5.337571 GGATGTCACATCTAACCTCTCACAA 60.338 44.000 17.46 0.00 0.00 3.33
2716 6983 5.545063 TGTCACATCTAACCTCTCACAAA 57.455 39.130 0.00 0.00 0.00 2.83
2717 6984 6.114187 TGTCACATCTAACCTCTCACAAAT 57.886 37.500 0.00 0.00 0.00 2.32
2718 6985 7.239763 TGTCACATCTAACCTCTCACAAATA 57.760 36.000 0.00 0.00 0.00 1.40
2719 6986 7.676004 TGTCACATCTAACCTCTCACAAATAA 58.324 34.615 0.00 0.00 0.00 1.40
2720 6987 7.819415 TGTCACATCTAACCTCTCACAAATAAG 59.181 37.037 0.00 0.00 0.00 1.73
2721 6988 7.278868 GTCACATCTAACCTCTCACAAATAAGG 59.721 40.741 0.00 0.00 34.94 2.69
2722 6989 6.037610 CACATCTAACCTCTCACAAATAAGGC 59.962 42.308 0.00 0.00 31.79 4.35
2723 6990 5.755409 TCTAACCTCTCACAAATAAGGCA 57.245 39.130 0.00 0.00 31.79 4.75
2724 6991 6.121776 TCTAACCTCTCACAAATAAGGCAA 57.878 37.500 0.00 0.00 31.79 4.52
2725 6992 5.938125 TCTAACCTCTCACAAATAAGGCAAC 59.062 40.000 0.00 0.00 31.79 4.17
2726 6993 4.098914 ACCTCTCACAAATAAGGCAACA 57.901 40.909 0.00 0.00 41.41 3.33
2727 6994 4.469657 ACCTCTCACAAATAAGGCAACAA 58.530 39.130 0.00 0.00 41.41 2.83
2728 6995 4.892934 ACCTCTCACAAATAAGGCAACAAA 59.107 37.500 0.00 0.00 41.41 2.83
2729 6996 5.362430 ACCTCTCACAAATAAGGCAACAAAA 59.638 36.000 0.00 0.00 41.41 2.44
2730 6997 6.127196 ACCTCTCACAAATAAGGCAACAAAAA 60.127 34.615 0.00 0.00 41.41 1.94
2781 7048 8.918202 AAAATAGACCACAAACATAGTGAAGA 57.082 30.769 0.00 0.00 39.30 2.87
2782 7049 9.520515 AAAATAGACCACAAACATAGTGAAGAT 57.479 29.630 0.00 0.00 39.30 2.40
2783 7050 8.723942 AATAGACCACAAACATAGTGAAGATC 57.276 34.615 0.00 0.00 39.30 2.75
2784 7051 6.114187 AGACCACAAACATAGTGAAGATCA 57.886 37.500 0.00 0.00 39.30 2.92
2785 7052 6.169094 AGACCACAAACATAGTGAAGATCAG 58.831 40.000 0.00 0.00 39.30 2.90
2786 7053 5.248640 ACCACAAACATAGTGAAGATCAGG 58.751 41.667 0.00 0.00 39.30 3.86
2787 7054 5.221925 ACCACAAACATAGTGAAGATCAGGT 60.222 40.000 0.00 0.00 39.30 4.00
2788 7055 5.707298 CCACAAACATAGTGAAGATCAGGTT 59.293 40.000 0.00 0.00 39.30 3.50
2789 7056 6.878923 CCACAAACATAGTGAAGATCAGGTTA 59.121 38.462 0.00 0.00 39.30 2.85
2790 7057 7.065085 CCACAAACATAGTGAAGATCAGGTTAG 59.935 40.741 0.00 0.00 39.30 2.34
2791 7058 7.819415 CACAAACATAGTGAAGATCAGGTTAGA 59.181 37.037 0.00 0.00 39.30 2.10
2792 7059 8.543774 ACAAACATAGTGAAGATCAGGTTAGAT 58.456 33.333 0.00 0.00 0.00 1.98
2793 7060 8.824781 CAAACATAGTGAAGATCAGGTTAGATG 58.175 37.037 0.00 0.00 0.00 2.90
2794 7061 7.667575 ACATAGTGAAGATCAGGTTAGATGT 57.332 36.000 0.00 0.00 0.00 3.06
2795 7062 7.495901 ACATAGTGAAGATCAGGTTAGATGTG 58.504 38.462 0.00 0.00 0.00 3.21
2796 7063 7.343057 ACATAGTGAAGATCAGGTTAGATGTGA 59.657 37.037 0.00 0.00 0.00 3.58
2797 7064 5.971763 AGTGAAGATCAGGTTAGATGTGAC 58.028 41.667 0.00 0.00 0.00 3.67
2798 7065 5.481824 AGTGAAGATCAGGTTAGATGTGACA 59.518 40.000 0.00 0.00 0.00 3.58
2799 7066 6.155910 AGTGAAGATCAGGTTAGATGTGACAT 59.844 38.462 0.00 0.00 0.00 3.06
2800 7067 7.343057 AGTGAAGATCAGGTTAGATGTGACATA 59.657 37.037 0.00 0.00 0.00 2.29
2801 7068 7.981789 GTGAAGATCAGGTTAGATGTGACATAA 59.018 37.037 0.00 0.00 0.00 1.90
2802 7069 7.981789 TGAAGATCAGGTTAGATGTGACATAAC 59.018 37.037 0.00 0.00 0.00 1.89
2803 7070 7.667575 AGATCAGGTTAGATGTGACATAACT 57.332 36.000 10.13 2.33 31.53 2.24
2804 7071 8.768501 AGATCAGGTTAGATGTGACATAACTA 57.231 34.615 10.13 1.46 31.53 2.24
2805 7072 9.373450 AGATCAGGTTAGATGTGACATAACTAT 57.627 33.333 10.13 3.77 31.53 2.12
2806 7073 9.416794 GATCAGGTTAGATGTGACATAACTATG 57.583 37.037 10.13 9.49 39.55 2.23
2834 7101 5.916661 TCTAGATGTGTCCTAGACAAACC 57.083 43.478 0.00 0.00 44.49 3.27
2835 7102 3.983044 AGATGTGTCCTAGACAAACCC 57.017 47.619 0.00 0.00 44.49 4.11
2836 7103 3.248024 AGATGTGTCCTAGACAAACCCA 58.752 45.455 0.00 0.00 44.49 4.51
2837 7104 3.650942 AGATGTGTCCTAGACAAACCCAA 59.349 43.478 0.00 0.00 44.49 4.12
2838 7105 4.289672 AGATGTGTCCTAGACAAACCCAAT 59.710 41.667 0.00 0.00 44.49 3.16
2839 7106 5.487488 AGATGTGTCCTAGACAAACCCAATA 59.513 40.000 0.00 0.00 44.49 1.90
2840 7107 5.772393 TGTGTCCTAGACAAACCCAATAT 57.228 39.130 0.00 0.00 44.49 1.28
2841 7108 6.134535 TGTGTCCTAGACAAACCCAATATT 57.865 37.500 0.00 0.00 44.49 1.28
2842 7109 5.943416 TGTGTCCTAGACAAACCCAATATTG 59.057 40.000 8.58 8.58 44.49 1.90
2843 7110 5.944007 GTGTCCTAGACAAACCCAATATTGT 59.056 40.000 14.25 0.00 44.49 2.71
2844 7111 7.107542 GTGTCCTAGACAAACCCAATATTGTA 58.892 38.462 14.25 0.00 44.49 2.41
2845 7112 7.608761 GTGTCCTAGACAAACCCAATATTGTAA 59.391 37.037 14.25 0.00 44.49 2.41
2846 7113 8.333235 TGTCCTAGACAAACCCAATATTGTAAT 58.667 33.333 14.25 0.00 39.78 1.89
2847 7114 8.621286 GTCCTAGACAAACCCAATATTGTAATG 58.379 37.037 14.25 9.67 39.73 1.90
2848 7115 8.553153 TCCTAGACAAACCCAATATTGTAATGA 58.447 33.333 14.25 0.00 39.73 2.57
2849 7116 8.840321 CCTAGACAAACCCAATATTGTAATGAG 58.160 37.037 14.25 2.77 39.73 2.90
2850 7117 9.613428 CTAGACAAACCCAATATTGTAATGAGA 57.387 33.333 14.25 0.24 39.73 3.27
2851 7118 8.877864 AGACAAACCCAATATTGTAATGAGAA 57.122 30.769 14.25 0.00 39.73 2.87
2852 7119 9.308000 AGACAAACCCAATATTGTAATGAGAAA 57.692 29.630 14.25 0.00 39.73 2.52
2853 7120 9.921637 GACAAACCCAATATTGTAATGAGAAAA 57.078 29.630 14.25 0.00 39.73 2.29
2854 7121 9.705290 ACAAACCCAATATTGTAATGAGAAAAC 57.295 29.630 14.25 0.00 37.96 2.43
2855 7122 9.703892 CAAACCCAATATTGTAATGAGAAAACA 57.296 29.630 14.25 0.00 0.00 2.83
2865 7132 6.980593 TGTAATGAGAAAACATTTGTGGAGG 58.019 36.000 0.00 0.00 40.36 4.30
2866 7133 6.549364 TGTAATGAGAAAACATTTGTGGAGGT 59.451 34.615 0.00 0.00 40.36 3.85
2867 7134 5.712152 ATGAGAAAACATTTGTGGAGGTC 57.288 39.130 0.00 0.00 0.00 3.85
2868 7135 4.792068 TGAGAAAACATTTGTGGAGGTCT 58.208 39.130 0.00 0.00 0.00 3.85
2869 7136 4.580167 TGAGAAAACATTTGTGGAGGTCTG 59.420 41.667 0.00 0.00 0.00 3.51
2870 7137 3.891366 AGAAAACATTTGTGGAGGTCTGG 59.109 43.478 0.00 0.00 0.00 3.86
2871 7138 3.593442 AAACATTTGTGGAGGTCTGGA 57.407 42.857 0.00 0.00 0.00 3.86
2872 7139 3.593442 AACATTTGTGGAGGTCTGGAA 57.407 42.857 0.00 0.00 0.00 3.53
2873 7140 3.593442 ACATTTGTGGAGGTCTGGAAA 57.407 42.857 0.00 0.00 0.00 3.13
2874 7141 3.909732 ACATTTGTGGAGGTCTGGAAAA 58.090 40.909 0.00 0.00 0.00 2.29
2875 7142 3.891366 ACATTTGTGGAGGTCTGGAAAAG 59.109 43.478 0.00 0.00 0.00 2.27
2876 7143 3.943671 TTTGTGGAGGTCTGGAAAAGA 57.056 42.857 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.254617 AGACCCCCAAACGGACCC 61.255 66.667 0.00 0.00 0.00 4.46
1 2 2.033602 CAGACCCCCAAACGGACC 59.966 66.667 0.00 0.00 0.00 4.46
2 3 2.671963 GCAGACCCCCAAACGGAC 60.672 66.667 0.00 0.00 0.00 4.79
3 4 2.478335 GATGCAGACCCCCAAACGGA 62.478 60.000 0.00 0.00 0.00 4.69
5 6 0.251916 TAGATGCAGACCCCCAAACG 59.748 55.000 0.00 0.00 0.00 3.60
6 7 2.301346 CATAGATGCAGACCCCCAAAC 58.699 52.381 0.00 0.00 0.00 2.93
7 8 2.734755 CATAGATGCAGACCCCCAAA 57.265 50.000 0.00 0.00 0.00 3.28
19 20 1.135546 CGGCGAGGACTAGCATAGATG 60.136 57.143 0.00 0.00 42.77 2.90
20 21 1.169577 CGGCGAGGACTAGCATAGAT 58.830 55.000 0.00 0.00 42.77 1.98
21 22 0.889638 CCGGCGAGGACTAGCATAGA 60.890 60.000 9.30 0.00 41.83 1.98
22 23 1.581954 CCGGCGAGGACTAGCATAG 59.418 63.158 9.30 0.00 46.50 2.23
23 24 2.561956 GCCGGCGAGGACTAGCATA 61.562 63.158 12.58 0.00 45.00 3.14
24 25 3.917760 GCCGGCGAGGACTAGCAT 61.918 66.667 12.58 0.00 45.00 3.79
32 33 4.763646 TTTTACGGGCCGGCGAGG 62.764 66.667 31.78 14.51 44.97 4.63
33 34 3.192922 CTTTTACGGGCCGGCGAG 61.193 66.667 31.78 19.26 0.00 5.03
43 44 0.767687 CGTGCAAAACCGCTTTTACG 59.232 50.000 0.00 0.00 32.18 3.18
44 45 2.108178 TCGTGCAAAACCGCTTTTAC 57.892 45.000 0.00 0.00 0.00 2.01
45 46 2.097791 AGTTCGTGCAAAACCGCTTTTA 59.902 40.909 9.07 0.00 0.00 1.52
46 47 1.135228 AGTTCGTGCAAAACCGCTTTT 60.135 42.857 9.07 0.00 0.00 2.27
47 48 0.454196 AGTTCGTGCAAAACCGCTTT 59.546 45.000 9.07 0.00 0.00 3.51
48 49 0.248458 CAGTTCGTGCAAAACCGCTT 60.248 50.000 9.07 0.00 0.00 4.68
49 50 1.355210 CAGTTCGTGCAAAACCGCT 59.645 52.632 9.07 0.00 0.00 5.52
50 51 3.902234 CAGTTCGTGCAAAACCGC 58.098 55.556 9.07 0.00 0.00 5.68
59 60 0.859788 AAACGCGTTTGCAGTTCGTG 60.860 50.000 34.36 15.35 42.97 4.35
60 61 0.179184 AAAACGCGTTTGCAGTTCGT 60.179 45.000 35.31 16.10 42.97 3.85
61 62 0.223513 CAAAACGCGTTTGCAGTTCG 59.776 50.000 35.31 15.11 40.25 3.95
69 70 2.279186 GGCCTGCAAAACGCGTTT 60.279 55.556 30.36 30.36 46.97 3.60
70 71 4.622456 CGGCCTGCAAAACGCGTT 62.622 61.111 20.79 20.79 46.97 4.84
75 76 3.783478 AAACGCCGGCCTGCAAAAC 62.783 57.895 23.46 0.00 0.00 2.43
76 77 3.082579 AAAACGCCGGCCTGCAAAA 62.083 52.632 23.46 0.00 0.00 2.44
77 78 3.532155 AAAACGCCGGCCTGCAAA 61.532 55.556 23.46 0.00 0.00 3.68
78 79 4.277593 CAAAACGCCGGCCTGCAA 62.278 61.111 23.46 0.00 0.00 4.08
81 82 4.705519 CTGCAAAACGCCGGCCTG 62.706 66.667 23.46 14.25 41.33 4.85
85 86 4.038080 GACCCTGCAAAACGCCGG 62.038 66.667 0.00 0.00 44.29 6.13
86 87 2.978010 AGACCCTGCAAAACGCCG 60.978 61.111 0.00 0.00 41.33 6.46
87 88 2.644992 CAGACCCTGCAAAACGCC 59.355 61.111 0.00 0.00 41.33 5.68
96 97 0.901124 AGCAACTCTAGCAGACCCTG 59.099 55.000 0.00 0.00 34.12 4.45
97 98 1.190643 GAGCAACTCTAGCAGACCCT 58.809 55.000 0.00 0.00 0.00 4.34
98 99 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
99 100 3.181480 CCTTAGAGCAACTCTAGCAGACC 60.181 52.174 4.64 0.00 42.92 3.85
100 101 3.181480 CCCTTAGAGCAACTCTAGCAGAC 60.181 52.174 4.64 0.00 42.92 3.51
101 102 3.027412 CCCTTAGAGCAACTCTAGCAGA 58.973 50.000 4.64 0.00 42.92 4.26
102 103 2.763448 ACCCTTAGAGCAACTCTAGCAG 59.237 50.000 4.64 1.45 42.92 4.24
103 104 2.821437 ACCCTTAGAGCAACTCTAGCA 58.179 47.619 4.64 0.00 42.92 3.49
104 105 3.735514 CGAACCCTTAGAGCAACTCTAGC 60.736 52.174 4.64 0.00 42.92 3.42
105 106 3.695060 TCGAACCCTTAGAGCAACTCTAG 59.305 47.826 4.64 0.00 42.92 2.43
106 107 3.442977 GTCGAACCCTTAGAGCAACTCTA 59.557 47.826 0.16 0.16 41.50 2.43
107 108 2.231721 GTCGAACCCTTAGAGCAACTCT 59.768 50.000 2.23 2.23 43.83 3.24
108 109 2.608268 GTCGAACCCTTAGAGCAACTC 58.392 52.381 0.00 0.00 0.00 3.01
109 110 1.275573 GGTCGAACCCTTAGAGCAACT 59.724 52.381 0.00 0.00 33.76 3.16
110 111 1.723220 GGTCGAACCCTTAGAGCAAC 58.277 55.000 0.00 0.00 33.76 4.17
124 125 1.606885 GGTTGGTATGTCGGGGTCGA 61.607 60.000 0.00 0.00 43.86 4.20
125 126 1.153509 GGTTGGTATGTCGGGGTCG 60.154 63.158 0.00 0.00 37.82 4.79
126 127 0.392060 GTGGTTGGTATGTCGGGGTC 60.392 60.000 0.00 0.00 0.00 4.46
127 128 1.128809 TGTGGTTGGTATGTCGGGGT 61.129 55.000 0.00 0.00 0.00 4.95
128 129 0.392461 CTGTGGTTGGTATGTCGGGG 60.392 60.000 0.00 0.00 0.00 5.73
129 130 0.611200 TCTGTGGTTGGTATGTCGGG 59.389 55.000 0.00 0.00 0.00 5.14
130 131 2.691409 ATCTGTGGTTGGTATGTCGG 57.309 50.000 0.00 0.00 0.00 4.79
131 132 4.570772 CCTAAATCTGTGGTTGGTATGTCG 59.429 45.833 0.00 0.00 0.00 4.35
132 133 4.881850 CCCTAAATCTGTGGTTGGTATGTC 59.118 45.833 0.00 0.00 0.00 3.06
133 134 4.291249 ACCCTAAATCTGTGGTTGGTATGT 59.709 41.667 0.00 0.00 0.00 2.29
134 135 4.855340 ACCCTAAATCTGTGGTTGGTATG 58.145 43.478 0.00 0.00 0.00 2.39
135 136 4.383770 CGACCCTAAATCTGTGGTTGGTAT 60.384 45.833 0.00 0.00 0.00 2.73
136 137 3.055675 CGACCCTAAATCTGTGGTTGGTA 60.056 47.826 0.00 0.00 0.00 3.25
137 138 2.290071 CGACCCTAAATCTGTGGTTGGT 60.290 50.000 0.00 0.00 0.00 3.67
138 139 2.290071 ACGACCCTAAATCTGTGGTTGG 60.290 50.000 0.00 0.00 36.71 3.77
139 140 3.000727 GACGACCCTAAATCTGTGGTTG 58.999 50.000 0.00 0.00 38.10 3.77
140 141 2.904434 AGACGACCCTAAATCTGTGGTT 59.096 45.455 0.00 0.00 0.00 3.67
141 142 2.537143 AGACGACCCTAAATCTGTGGT 58.463 47.619 0.00 0.00 0.00 4.16
142 143 3.611766 AAGACGACCCTAAATCTGTGG 57.388 47.619 0.00 0.00 0.00 4.17
143 144 5.941948 AAAAAGACGACCCTAAATCTGTG 57.058 39.130 0.00 0.00 0.00 3.66
144 145 8.631480 AATTAAAAAGACGACCCTAAATCTGT 57.369 30.769 0.00 0.00 0.00 3.41
170 171 9.921637 ACGCAAGGAAAGAATAAAATGAAAATA 57.078 25.926 0.00 0.00 46.39 1.40
171 172 8.831715 ACGCAAGGAAAGAATAAAATGAAAAT 57.168 26.923 0.00 0.00 46.39 1.82
172 173 9.921637 ATACGCAAGGAAAGAATAAAATGAAAA 57.078 25.926 0.00 0.00 46.39 2.29
173 174 9.921637 AATACGCAAGGAAAGAATAAAATGAAA 57.078 25.926 0.00 0.00 46.39 2.69
174 175 9.921637 AAATACGCAAGGAAAGAATAAAATGAA 57.078 25.926 0.00 0.00 46.39 2.57
175 176 9.352784 CAAATACGCAAGGAAAGAATAAAATGA 57.647 29.630 0.00 0.00 46.39 2.57
176 177 9.139174 ACAAATACGCAAGGAAAGAATAAAATG 57.861 29.630 0.00 0.00 46.39 2.32
178 179 9.834628 CTACAAATACGCAAGGAAAGAATAAAA 57.165 29.630 0.00 0.00 46.39 1.52
179 180 9.005777 ACTACAAATACGCAAGGAAAGAATAAA 57.994 29.630 0.00 0.00 46.39 1.40
180 181 8.447833 CACTACAAATACGCAAGGAAAGAATAA 58.552 33.333 0.00 0.00 46.39 1.40
181 182 7.413657 GCACTACAAATACGCAAGGAAAGAATA 60.414 37.037 0.00 0.00 46.39 1.75
182 183 6.622896 GCACTACAAATACGCAAGGAAAGAAT 60.623 38.462 0.00 0.00 46.39 2.40
183 184 5.334569 GCACTACAAATACGCAAGGAAAGAA 60.335 40.000 0.00 0.00 46.39 2.52
184 185 4.153475 GCACTACAAATACGCAAGGAAAGA 59.847 41.667 0.00 0.00 46.39 2.52
185 186 4.083537 TGCACTACAAATACGCAAGGAAAG 60.084 41.667 0.00 0.00 46.39 2.62
186 187 3.815962 TGCACTACAAATACGCAAGGAAA 59.184 39.130 0.00 0.00 46.39 3.13
187 188 3.187637 GTGCACTACAAATACGCAAGGAA 59.812 43.478 10.32 0.00 46.39 3.36
188 189 2.739913 GTGCACTACAAATACGCAAGGA 59.260 45.455 10.32 0.00 46.39 3.36
189 190 2.482336 TGTGCACTACAAATACGCAAGG 59.518 45.455 19.41 0.00 37.93 3.61
190 191 3.186409 AGTGTGCACTACAAATACGCAAG 59.814 43.478 19.41 0.00 41.89 4.01
191 192 3.135225 AGTGTGCACTACAAATACGCAA 58.865 40.909 19.41 0.00 41.89 4.85
192 193 2.761559 AGTGTGCACTACAAATACGCA 58.238 42.857 19.41 0.00 41.89 5.24
193 194 3.479006 CAAGTGTGCACTACAAATACGC 58.521 45.455 19.41 0.00 41.89 4.42
207 208 1.002366 GCACTCGGATAGCAAGTGTG 58.998 55.000 12.53 8.44 41.90 3.82
208 209 0.608130 TGCACTCGGATAGCAAGTGT 59.392 50.000 12.53 0.00 41.90 3.55
209 210 1.002366 GTGCACTCGGATAGCAAGTG 58.998 55.000 10.32 8.04 42.59 3.16
210 211 0.108138 GGTGCACTCGGATAGCAAGT 60.108 55.000 17.98 0.00 40.35 3.16
211 212 0.108186 TGGTGCACTCGGATAGCAAG 60.108 55.000 17.98 0.00 40.35 4.01
212 213 0.391130 GTGGTGCACTCGGATAGCAA 60.391 55.000 17.98 0.00 40.35 3.91
213 214 1.218047 GTGGTGCACTCGGATAGCA 59.782 57.895 17.98 0.00 35.63 3.49
214 215 1.878522 CGTGGTGCACTCGGATAGC 60.879 63.158 17.98 0.00 32.77 2.97
215 216 1.878522 GCGTGGTGCACTCGGATAG 60.879 63.158 26.09 11.04 45.45 2.08
216 217 2.183300 GCGTGGTGCACTCGGATA 59.817 61.111 26.09 4.40 45.45 2.59
231 232 4.787286 TACAATGGGTGGCCGGCG 62.787 66.667 22.54 6.21 0.00 6.46
232 233 3.138128 GTACAATGGGTGGCCGGC 61.138 66.667 21.18 21.18 0.00 6.13
233 234 1.303724 TTGTACAATGGGTGGCCGG 60.304 57.895 3.59 0.00 0.00 6.13
234 235 0.608035 AGTTGTACAATGGGTGGCCG 60.608 55.000 12.26 0.00 0.00 6.13
235 236 2.500392 TAGTTGTACAATGGGTGGCC 57.500 50.000 12.26 0.00 0.00 5.36
236 237 6.503524 CAATTATAGTTGTACAATGGGTGGC 58.496 40.000 12.26 0.00 0.00 5.01
237 238 6.096141 TGCAATTATAGTTGTACAATGGGTGG 59.904 38.462 12.26 0.00 0.00 4.61
238 239 7.094508 TGCAATTATAGTTGTACAATGGGTG 57.905 36.000 12.26 5.56 0.00 4.61
239 240 7.684187 GCATGCAATTATAGTTGTACAATGGGT 60.684 37.037 14.21 1.64 0.00 4.51
240 241 6.642131 GCATGCAATTATAGTTGTACAATGGG 59.358 38.462 14.21 0.00 0.00 4.00
241 242 7.428020 AGCATGCAATTATAGTTGTACAATGG 58.572 34.615 21.98 0.00 0.00 3.16
242 243 7.321984 CGAGCATGCAATTATAGTTGTACAATG 59.678 37.037 21.98 5.19 0.00 2.82
243 244 7.355017 CGAGCATGCAATTATAGTTGTACAAT 58.645 34.615 21.98 3.86 0.00 2.71
248 249 3.879295 AGCGAGCATGCAATTATAGTTGT 59.121 39.130 21.98 0.00 37.31 3.32
275 276 0.449786 TGACCCATGCAATTTACGCG 59.550 50.000 3.53 3.53 0.00 6.01
277 278 2.415357 GGTGTGACCCATGCAATTTACG 60.415 50.000 0.00 0.00 30.04 3.18
290 291 0.881600 GTTACGTGTGGGGTGTGACC 60.882 60.000 0.00 0.00 37.60 4.02
293 294 1.146485 TGGTTACGTGTGGGGTGTG 59.854 57.895 0.00 0.00 0.00 3.82
294 295 1.146707 GTGGTTACGTGTGGGGTGT 59.853 57.895 0.00 0.00 0.00 4.16
310 311 0.747644 TGTGAGTTGGTGCACCTGTG 60.748 55.000 34.75 0.00 36.82 3.66
311 312 0.748005 GTGTGAGTTGGTGCACCTGT 60.748 55.000 34.75 19.94 36.82 4.00
325 326 2.088423 AGAAAACCAAGTTGCGTGTGA 58.912 42.857 0.00 0.00 0.00 3.58
327 328 3.692593 AGTAAGAAAACCAAGTTGCGTGT 59.307 39.130 0.00 0.00 0.00 4.49
375 377 0.386113 TTGATGTCGTGTCACGGTGA 59.614 50.000 24.33 6.76 42.81 4.02
376 378 1.428448 ATTGATGTCGTGTCACGGTG 58.572 50.000 24.33 0.56 42.81 4.94
377 379 2.029739 TGTATTGATGTCGTGTCACGGT 60.030 45.455 24.33 11.46 42.81 4.83
379 381 3.242518 AGTGTATTGATGTCGTGTCACG 58.757 45.455 19.38 19.38 44.19 4.35
380 382 4.234574 TGAGTGTATTGATGTCGTGTCAC 58.765 43.478 0.00 0.00 0.00 3.67
381 383 4.513198 TGAGTGTATTGATGTCGTGTCA 57.487 40.909 0.00 0.00 0.00 3.58
391 393 7.701539 AATAAAGGTTGCATGAGTGTATTGA 57.298 32.000 0.00 0.00 0.00 2.57
413 415 9.590451 CATGTGCAACTGATAGGAATTTAAAAT 57.410 29.630 0.00 0.00 38.04 1.82
414 416 8.034215 CCATGTGCAACTGATAGGAATTTAAAA 58.966 33.333 0.00 0.00 38.04 1.52
415 417 7.363705 CCCATGTGCAACTGATAGGAATTTAAA 60.364 37.037 0.00 0.00 38.04 1.52
416 418 6.096705 CCCATGTGCAACTGATAGGAATTTAA 59.903 38.462 0.00 0.00 38.04 1.52
417 419 5.593909 CCCATGTGCAACTGATAGGAATTTA 59.406 40.000 0.00 0.00 38.04 1.40
421 423 2.945440 GCCCATGTGCAACTGATAGGAA 60.945 50.000 0.00 0.00 38.04 3.36
422 424 1.408683 GCCCATGTGCAACTGATAGGA 60.409 52.381 0.00 0.00 38.04 2.94
423 425 1.027357 GCCCATGTGCAACTGATAGG 58.973 55.000 0.00 0.00 38.04 2.57
424 426 0.659427 CGCCCATGTGCAACTGATAG 59.341 55.000 0.00 0.00 38.04 2.08
470 495 2.476051 CATGTCTGTTGCGGCGTC 59.524 61.111 9.37 0.91 0.00 5.19
472 497 3.252665 TTGCATGTCTGTTGCGGCG 62.253 57.895 0.51 0.51 43.10 6.46
475 500 1.800586 ACTAGTTGCATGTCTGTTGCG 59.199 47.619 0.00 0.00 43.10 4.85
482 507 0.328258 ACCCCCACTAGTTGCATGTC 59.672 55.000 0.00 0.00 0.00 3.06
495 522 8.714906 TGTGAAAATTTATAAAAAGAACCCCCA 58.285 29.630 1.21 0.00 0.00 4.96
521 549 0.822164 AGGCACGCTAGTAACCGAAT 59.178 50.000 0.00 0.00 32.66 3.34
522 550 0.604578 AAGGCACGCTAGTAACCGAA 59.395 50.000 0.00 0.00 32.66 4.30
524 552 1.435577 AAAAGGCACGCTAGTAACCG 58.564 50.000 0.00 0.00 32.66 4.44
525 553 5.556355 AAATAAAAGGCACGCTAGTAACC 57.444 39.130 0.00 0.00 0.00 2.85
529 557 5.959618 AGAAAAATAAAAGGCACGCTAGT 57.040 34.783 0.00 0.00 0.00 2.57
531 559 9.187455 CTTTTTAGAAAAATAAAAGGCACGCTA 57.813 29.630 0.85 0.00 37.27 4.26
533 561 8.067780 TCTTTTTAGAAAAATAAAAGGCACGC 57.932 30.769 0.00 0.00 38.67 5.34
557 585 9.691362 TCCTACTTTTTAAATTTGCAAGTGATC 57.309 29.630 16.12 0.00 0.00 2.92
630 662 2.097036 CCGTGTGACTAGGGTGTGATA 58.903 52.381 0.00 0.00 0.00 2.15
695 727 6.983890 CCCCGGAAACCATGATTTTATTTAAG 59.016 38.462 0.73 0.00 0.00 1.85
709 744 0.032416 TTTGGAAACCCCGGAAACCA 60.032 50.000 0.73 2.04 37.93 3.67
711 746 1.069513 CCTTTTGGAAACCCCGGAAAC 59.930 52.381 0.73 0.00 44.07 2.78
756 791 4.379793 CGAGAGCTTTCCAAAACAAAATCG 59.620 41.667 0.00 0.00 0.00 3.34
763 800 4.222114 CAACATCGAGAGCTTTCCAAAAC 58.778 43.478 0.00 0.00 0.00 2.43
767 804 1.002430 AGCAACATCGAGAGCTTTCCA 59.998 47.619 0.00 0.00 32.52 3.53
787 824 1.524961 GGCCGATACATGTCACCCA 59.475 57.895 0.00 0.00 0.00 4.51
873 910 1.302192 TTCGCTAGGGGTGTTGTGC 60.302 57.895 6.99 0.00 0.00 4.57
877 914 1.003718 GCTGTTCGCTAGGGGTGTT 60.004 57.895 6.99 0.00 35.14 3.32
886 923 1.373497 CCTCTGTTCGCTGTTCGCT 60.373 57.895 0.00 0.00 38.27 4.93
899 943 1.375652 CTGTGCCTCTGTGCCTCTG 60.376 63.158 0.00 0.00 0.00 3.35
900 944 1.534959 TCTGTGCCTCTGTGCCTCT 60.535 57.895 0.00 0.00 0.00 3.69
901 945 1.079266 CTCTGTGCCTCTGTGCCTC 60.079 63.158 0.00 0.00 0.00 4.70
902 946 2.591072 CCTCTGTGCCTCTGTGCCT 61.591 63.158 0.00 0.00 0.00 4.75
903 947 2.046507 CCTCTGTGCCTCTGTGCC 60.047 66.667 0.00 0.00 0.00 5.01
904 948 2.046507 CCCTCTGTGCCTCTGTGC 60.047 66.667 0.00 0.00 0.00 4.57
905 949 1.595882 CTCCCTCTGTGCCTCTGTG 59.404 63.158 0.00 0.00 0.00 3.66
930 974 2.031807 CCCACAGAGATGAGTACGTACG 59.968 54.545 19.49 15.01 0.00 3.67
947 993 0.321996 AGAGGAAAGAACTCGCCCAC 59.678 55.000 0.00 0.00 39.90 4.61
973 1019 0.472471 TTGGAAGCTTTCACTCCGGT 59.528 50.000 7.03 0.00 0.00 5.28
975 1021 2.426522 TGATTGGAAGCTTTCACTCCG 58.573 47.619 19.42 0.00 0.00 4.63
981 1032 4.690122 CCATGGATTGATTGGAAGCTTTC 58.310 43.478 5.56 0.00 31.94 2.62
990 1041 4.885907 AGACAACTAGCCATGGATTGATTG 59.114 41.667 18.40 17.98 0.00 2.67
1005 1056 1.835494 CCAGAGGGACGAGACAACTA 58.165 55.000 0.00 0.00 35.59 2.24
1015 1066 1.079057 GAAGAACGGCCAGAGGGAC 60.079 63.158 2.24 0.00 39.68 4.46
1075 1131 9.530129 CAACTCGATTGAAAAGAAACATACTAC 57.470 33.333 0.00 0.00 41.23 2.73
1081 1137 5.828299 ACCAACTCGATTGAAAAGAAACA 57.172 34.783 8.56 0.00 41.23 2.83
1082 1138 6.019881 CCAAACCAACTCGATTGAAAAGAAAC 60.020 38.462 8.56 0.00 41.23 2.78
1083 1139 6.039616 CCAAACCAACTCGATTGAAAAGAAA 58.960 36.000 8.56 0.00 41.23 2.52
1084 1140 5.587289 CCAAACCAACTCGATTGAAAAGAA 58.413 37.500 8.56 0.00 41.23 2.52
1085 1141 4.499019 GCCAAACCAACTCGATTGAAAAGA 60.499 41.667 8.56 0.00 41.23 2.52
1095 1151 1.898574 AGCCTGCCAAACCAACTCG 60.899 57.895 0.00 0.00 0.00 4.18
1105 1168 0.896923 CCAAATTAAGCAGCCTGCCA 59.103 50.000 14.25 0.00 46.52 4.92
1265 1335 3.637273 GGTGAAGGCGACCCAGGT 61.637 66.667 0.00 0.00 0.00 4.00
1381 1454 1.140312 AAGCAACCAAGGGAGACTGA 58.860 50.000 0.00 0.00 0.00 3.41
1384 1457 1.202940 AGGAAAGCAACCAAGGGAGAC 60.203 52.381 0.00 0.00 0.00 3.36
1389 1462 1.074566 AGAGGAGGAAAGCAACCAAGG 59.925 52.381 0.00 0.00 0.00 3.61
1394 1467 1.273886 AGACGAGAGGAGGAAAGCAAC 59.726 52.381 0.00 0.00 0.00 4.17
1397 1470 0.459411 GCAGACGAGAGGAGGAAAGC 60.459 60.000 0.00 0.00 0.00 3.51
1417 1490 3.353524 TGAATTAATACCGTCGACGTCG 58.646 45.455 33.49 31.30 41.45 5.12
1418 1491 4.795278 ACTTGAATTAATACCGTCGACGTC 59.205 41.667 33.49 22.28 37.74 4.34
1419 1492 4.560035 CACTTGAATTAATACCGTCGACGT 59.440 41.667 33.49 23.69 37.74 4.34
1521 5588 2.821685 CGCATCTTCCATCCGGGA 59.178 61.111 0.00 0.00 46.61 5.14
1544 5611 0.673437 CCTTCCTCGCTCTGGATCTC 59.327 60.000 0.00 0.00 33.09 2.75
1607 5674 1.869767 CATCCGCTTCAGCTTGGATAC 59.130 52.381 7.64 0.00 38.61 2.24
1666 5740 4.394712 GAGTGCCAGGGGACGGTG 62.395 72.222 4.23 0.00 41.44 4.94
1895 5969 3.423154 GTCGTGGCGCCCTTCAAG 61.423 66.667 26.77 7.63 0.00 3.02
1964 6038 2.092699 GGTGCTTCTCCCTGATAAGCTT 60.093 50.000 3.48 3.48 40.71 3.74
2089 6163 1.519455 GCCGTCCAAGATCGACTGG 60.519 63.158 4.05 4.05 0.00 4.00
2090 6164 1.874019 CGCCGTCCAAGATCGACTG 60.874 63.158 0.00 0.00 0.00 3.51
2096 6170 0.392998 AAATCTGCGCCGTCCAAGAT 60.393 50.000 4.18 1.75 0.00 2.40
2110 6184 0.460987 CAGCCGGCTCGAAGAAATCT 60.461 55.000 30.29 0.00 34.09 2.40
2129 6203 3.398353 CTCGAACTCGGCCCTCGTC 62.398 68.421 0.00 0.00 40.29 4.20
2157 6231 0.599728 GCTCTCGCCATCAGATCACC 60.600 60.000 0.00 0.00 0.00 4.02
2238 6312 0.600557 AGGATGATCTCGTCGATGCC 59.399 55.000 0.00 0.00 32.78 4.40
2276 6350 2.122768 AGCTCAAGAATCTCGGGGATT 58.877 47.619 1.96 1.96 46.24 3.01
2283 6357 4.394610 GTCCCTGAAAAGCTCAAGAATCTC 59.605 45.833 0.00 0.00 32.17 2.75
2324 6398 2.519013 GCTTCTTCCTCCACAATTGGT 58.481 47.619 10.83 0.00 44.35 3.67
2402 6476 6.018751 CACGGCAGTAGTAACTATCGTAGTTA 60.019 42.308 11.27 11.27 46.53 2.24
2407 6481 2.357009 CCACGGCAGTAGTAACTATCGT 59.643 50.000 0.00 0.00 41.27 3.73
2461 6535 8.555361 GCAAGACTCAAAACCTTATGATCTATC 58.445 37.037 0.00 0.00 0.00 2.08
2472 6547 1.308998 CACCGCAAGACTCAAAACCT 58.691 50.000 0.00 0.00 43.02 3.50
2487 6562 2.406130 ACAATTTCATTTGCAGCACCG 58.594 42.857 0.00 0.00 0.00 4.94
2494 6569 5.390613 AGTAGCACGTACAATTTCATTTGC 58.609 37.500 0.00 0.00 33.55 3.68
2500 6575 7.113704 ACAAAGTAGTAGCACGTACAATTTC 57.886 36.000 0.00 0.00 33.55 2.17
2518 6593 9.450807 CAAAAGAAAAGATGACGATAACAAAGT 57.549 29.630 0.00 0.00 0.00 2.66
2519 6594 8.905702 CCAAAAGAAAAGATGACGATAACAAAG 58.094 33.333 0.00 0.00 0.00 2.77
2525 6600 6.234920 TCACCCAAAAGAAAAGATGACGATA 58.765 36.000 0.00 0.00 0.00 2.92
2533 6608 4.145365 TCGTCTCACCCAAAAGAAAAGA 57.855 40.909 0.00 0.00 0.00 2.52
2536 6611 4.065088 CAGATCGTCTCACCCAAAAGAAA 58.935 43.478 0.00 0.00 0.00 2.52
2539 6614 2.350522 CCAGATCGTCTCACCCAAAAG 58.649 52.381 0.00 0.00 0.00 2.27
2546 6621 0.531532 CATGCCCCAGATCGTCTCAC 60.532 60.000 0.00 0.00 0.00 3.51
2553 6628 1.213926 AGAAACTCCATGCCCCAGATC 59.786 52.381 0.00 0.00 0.00 2.75
2558 6633 0.259938 ATCCAGAAACTCCATGCCCC 59.740 55.000 0.00 0.00 0.00 5.80
2561 6636 0.379669 CGCATCCAGAAACTCCATGC 59.620 55.000 0.00 0.00 37.16 4.06
2585 6662 2.884087 ATACTGTTCACTCGCGCGGG 62.884 60.000 31.23 31.23 0.00 6.13
2586 6663 1.472276 GATACTGTTCACTCGCGCGG 61.472 60.000 31.69 22.52 0.00 6.46
2591 6668 2.926200 CCAAGCAGATACTGTTCACTCG 59.074 50.000 0.00 0.00 33.43 4.18
2594 6671 1.394917 CGCCAAGCAGATACTGTTCAC 59.605 52.381 0.00 0.00 33.43 3.18
2604 6681 1.001487 CAATGTTTGTCGCCAAGCAGA 60.001 47.619 1.62 0.00 43.67 4.26
2605 6682 1.269206 ACAATGTTTGTCGCCAAGCAG 60.269 47.619 1.62 0.00 43.67 4.24
2606 6683 0.743688 ACAATGTTTGTCGCCAAGCA 59.256 45.000 0.00 0.00 44.38 3.91
2607 6684 1.522258 CAACAATGTTTGTCGCCAAGC 59.478 47.619 0.00 0.00 44.59 4.01
2608 6685 3.077229 TCAACAATGTTTGTCGCCAAG 57.923 42.857 0.00 0.00 44.59 3.61
2609 6686 3.510388 TTCAACAATGTTTGTCGCCAA 57.490 38.095 0.00 0.00 44.59 4.52
2610 6687 3.379240 CATTCAACAATGTTTGTCGCCA 58.621 40.909 0.00 0.00 44.59 5.69
2651 6918 9.507329 AGATGTGAATTAGACAAACTGTACAAT 57.493 29.630 0.00 0.00 0.00 2.71
2653 6920 9.639601 CTAGATGTGAATTAGACAAACTGTACA 57.360 33.333 0.00 0.00 0.00 2.90
2681 6948 9.832445 GGTTAGATGTGACATCCTTAGAAAATA 57.168 33.333 21.05 2.00 0.00 1.40
2682 6949 8.552296 AGGTTAGATGTGACATCCTTAGAAAAT 58.448 33.333 21.05 2.95 0.00 1.82
2683 6950 7.918076 AGGTTAGATGTGACATCCTTAGAAAA 58.082 34.615 21.05 3.24 0.00 2.29
2684 6951 7.400339 AGAGGTTAGATGTGACATCCTTAGAAA 59.600 37.037 21.05 4.81 0.00 2.52
2685 6952 6.897966 AGAGGTTAGATGTGACATCCTTAGAA 59.102 38.462 21.05 6.23 0.00 2.10
2686 6953 6.436027 AGAGGTTAGATGTGACATCCTTAGA 58.564 40.000 21.05 1.44 0.00 2.10
2687 6954 6.322456 TGAGAGGTTAGATGTGACATCCTTAG 59.678 42.308 21.05 0.00 0.00 2.18
2688 6955 6.096987 GTGAGAGGTTAGATGTGACATCCTTA 59.903 42.308 21.05 6.22 0.00 2.69
2689 6956 5.026121 TGAGAGGTTAGATGTGACATCCTT 58.974 41.667 21.05 7.22 0.00 3.36
2690 6957 4.404073 GTGAGAGGTTAGATGTGACATCCT 59.596 45.833 21.05 12.23 0.00 3.24
2691 6958 4.160439 TGTGAGAGGTTAGATGTGACATCC 59.840 45.833 21.05 7.40 0.00 3.51
2692 6959 5.330455 TGTGAGAGGTTAGATGTGACATC 57.670 43.478 17.46 17.46 0.00 3.06
2693 6960 5.745312 TTGTGAGAGGTTAGATGTGACAT 57.255 39.130 0.00 0.00 0.00 3.06
2694 6961 5.545063 TTTGTGAGAGGTTAGATGTGACA 57.455 39.130 0.00 0.00 0.00 3.58
2695 6962 7.278868 CCTTATTTGTGAGAGGTTAGATGTGAC 59.721 40.741 0.00 0.00 0.00 3.67
2696 6963 7.331026 CCTTATTTGTGAGAGGTTAGATGTGA 58.669 38.462 0.00 0.00 0.00 3.58
2697 6964 6.037610 GCCTTATTTGTGAGAGGTTAGATGTG 59.962 42.308 0.00 0.00 0.00 3.21
2698 6965 6.116126 GCCTTATTTGTGAGAGGTTAGATGT 58.884 40.000 0.00 0.00 0.00 3.06
2699 6966 6.115446 TGCCTTATTTGTGAGAGGTTAGATG 58.885 40.000 0.00 0.00 0.00 2.90
2700 6967 6.313519 TGCCTTATTTGTGAGAGGTTAGAT 57.686 37.500 0.00 0.00 0.00 1.98
2701 6968 5.755409 TGCCTTATTTGTGAGAGGTTAGA 57.245 39.130 0.00 0.00 0.00 2.10
2702 6969 5.705441 TGTTGCCTTATTTGTGAGAGGTTAG 59.295 40.000 0.00 0.00 0.00 2.34
2703 6970 5.626142 TGTTGCCTTATTTGTGAGAGGTTA 58.374 37.500 0.00 0.00 0.00 2.85
2704 6971 4.469657 TGTTGCCTTATTTGTGAGAGGTT 58.530 39.130 0.00 0.00 0.00 3.50
2705 6972 4.098914 TGTTGCCTTATTTGTGAGAGGT 57.901 40.909 0.00 0.00 0.00 3.85
2706 6973 5.452078 TTTGTTGCCTTATTTGTGAGAGG 57.548 39.130 0.00 0.00 0.00 3.69
2755 7022 9.349713 TCTTCACTATGTTTGTGGTCTATTTTT 57.650 29.630 0.00 0.00 36.21 1.94
2756 7023 8.918202 TCTTCACTATGTTTGTGGTCTATTTT 57.082 30.769 0.00 0.00 36.21 1.82
2757 7024 9.167311 GATCTTCACTATGTTTGTGGTCTATTT 57.833 33.333 0.00 0.00 36.21 1.40
2758 7025 8.321353 TGATCTTCACTATGTTTGTGGTCTATT 58.679 33.333 0.00 0.00 36.21 1.73
2759 7026 7.851228 TGATCTTCACTATGTTTGTGGTCTAT 58.149 34.615 0.00 0.00 36.21 1.98
2760 7027 7.239763 TGATCTTCACTATGTTTGTGGTCTA 57.760 36.000 0.00 0.00 36.21 2.59
2761 7028 6.114187 TGATCTTCACTATGTTTGTGGTCT 57.886 37.500 0.00 0.00 36.21 3.85
2762 7029 5.352569 CCTGATCTTCACTATGTTTGTGGTC 59.647 44.000 0.00 0.00 36.21 4.02
2763 7030 5.221925 ACCTGATCTTCACTATGTTTGTGGT 60.222 40.000 0.00 0.00 36.21 4.16
2764 7031 5.248640 ACCTGATCTTCACTATGTTTGTGG 58.751 41.667 0.00 0.00 36.21 4.17
2765 7032 6.808008 AACCTGATCTTCACTATGTTTGTG 57.192 37.500 0.00 0.00 36.82 3.33
2766 7033 7.907389 TCTAACCTGATCTTCACTATGTTTGT 58.093 34.615 0.00 0.00 0.00 2.83
2767 7034 8.824781 CATCTAACCTGATCTTCACTATGTTTG 58.175 37.037 0.00 0.00 0.00 2.93
2768 7035 8.543774 ACATCTAACCTGATCTTCACTATGTTT 58.456 33.333 0.00 0.00 0.00 2.83
2769 7036 7.984050 CACATCTAACCTGATCTTCACTATGTT 59.016 37.037 0.00 0.00 0.00 2.71
2770 7037 7.343057 TCACATCTAACCTGATCTTCACTATGT 59.657 37.037 0.00 0.00 0.00 2.29
2771 7038 7.651304 GTCACATCTAACCTGATCTTCACTATG 59.349 40.741 0.00 0.00 0.00 2.23
2772 7039 7.343057 TGTCACATCTAACCTGATCTTCACTAT 59.657 37.037 0.00 0.00 0.00 2.12
2773 7040 6.663523 TGTCACATCTAACCTGATCTTCACTA 59.336 38.462 0.00 0.00 0.00 2.74
2774 7041 5.481824 TGTCACATCTAACCTGATCTTCACT 59.518 40.000 0.00 0.00 0.00 3.41
2775 7042 5.724328 TGTCACATCTAACCTGATCTTCAC 58.276 41.667 0.00 0.00 0.00 3.18
2776 7043 6.550938 ATGTCACATCTAACCTGATCTTCA 57.449 37.500 0.00 0.00 0.00 3.02
2777 7044 8.200792 AGTTATGTCACATCTAACCTGATCTTC 58.799 37.037 0.00 0.00 0.00 2.87
2778 7045 8.083828 AGTTATGTCACATCTAACCTGATCTT 57.916 34.615 0.00 0.00 0.00 2.40
2779 7046 7.667575 AGTTATGTCACATCTAACCTGATCT 57.332 36.000 0.00 0.00 0.00 2.75
2780 7047 9.416794 CATAGTTATGTCACATCTAACCTGATC 57.583 37.037 0.00 0.00 0.00 2.92
2781 7048 8.928448 ACATAGTTATGTCACATCTAACCTGAT 58.072 33.333 0.00 0.00 42.96 2.90
2782 7049 8.306313 ACATAGTTATGTCACATCTAACCTGA 57.694 34.615 0.00 0.00 42.96 3.86
2810 7077 6.276847 GGTTTGTCTAGGACACATCTAGATG 58.723 44.000 27.63 27.63 42.60 2.90
2811 7078 5.364157 GGGTTTGTCTAGGACACATCTAGAT 59.636 44.000 0.00 0.00 42.60 1.98
2812 7079 4.710375 GGGTTTGTCTAGGACACATCTAGA 59.290 45.833 0.00 0.00 42.60 2.43
2813 7080 4.466370 TGGGTTTGTCTAGGACACATCTAG 59.534 45.833 0.00 0.00 42.60 2.43
2814 7081 4.422057 TGGGTTTGTCTAGGACACATCTA 58.578 43.478 0.00 0.00 42.60 1.98
2815 7082 3.248024 TGGGTTTGTCTAGGACACATCT 58.752 45.455 0.00 0.00 42.60 2.90
2816 7083 3.695830 TGGGTTTGTCTAGGACACATC 57.304 47.619 0.00 0.00 42.60 3.06
2817 7084 4.657814 ATTGGGTTTGTCTAGGACACAT 57.342 40.909 0.00 0.00 42.60 3.21
2818 7085 5.772393 ATATTGGGTTTGTCTAGGACACA 57.228 39.130 0.00 0.00 42.60 3.72
2819 7086 5.944007 ACAATATTGGGTTTGTCTAGGACAC 59.056 40.000 19.37 0.00 42.60 3.67
2820 7087 6.134535 ACAATATTGGGTTTGTCTAGGACA 57.865 37.500 19.37 0.00 41.09 4.02
2821 7088 8.621286 CATTACAATATTGGGTTTGTCTAGGAC 58.379 37.037 19.37 0.00 37.29 3.85
2822 7089 8.553153 TCATTACAATATTGGGTTTGTCTAGGA 58.447 33.333 19.37 0.73 37.29 2.94
2823 7090 8.746052 TCATTACAATATTGGGTTTGTCTAGG 57.254 34.615 19.37 0.00 37.29 3.02
2824 7091 9.613428 TCTCATTACAATATTGGGTTTGTCTAG 57.387 33.333 19.37 5.51 37.29 2.43
2825 7092 9.967451 TTCTCATTACAATATTGGGTTTGTCTA 57.033 29.630 19.37 0.00 37.29 2.59
2826 7093 8.877864 TTCTCATTACAATATTGGGTTTGTCT 57.122 30.769 19.37 0.00 37.29 3.41
2827 7094 9.921637 TTTTCTCATTACAATATTGGGTTTGTC 57.078 29.630 19.37 0.00 37.29 3.18
2828 7095 9.705290 GTTTTCTCATTACAATATTGGGTTTGT 57.295 29.630 19.37 1.47 39.32 2.83
2829 7096 9.703892 TGTTTTCTCATTACAATATTGGGTTTG 57.296 29.630 19.37 10.92 0.00 2.93
2839 7106 8.090214 CCTCCACAAATGTTTTCTCATTACAAT 58.910 33.333 0.00 0.00 37.09 2.71
2840 7107 7.069331 ACCTCCACAAATGTTTTCTCATTACAA 59.931 33.333 0.00 0.00 37.09 2.41
2841 7108 6.549364 ACCTCCACAAATGTTTTCTCATTACA 59.451 34.615 0.00 0.00 37.09 2.41
2842 7109 6.981722 ACCTCCACAAATGTTTTCTCATTAC 58.018 36.000 0.00 0.00 37.09 1.89
2843 7110 7.004086 AGACCTCCACAAATGTTTTCTCATTA 58.996 34.615 0.00 0.00 37.09 1.90
2844 7111 5.835280 AGACCTCCACAAATGTTTTCTCATT 59.165 36.000 0.00 0.00 39.35 2.57
2845 7112 5.242393 CAGACCTCCACAAATGTTTTCTCAT 59.758 40.000 0.00 0.00 0.00 2.90
2846 7113 4.580167 CAGACCTCCACAAATGTTTTCTCA 59.420 41.667 0.00 0.00 0.00 3.27
2847 7114 4.022849 CCAGACCTCCACAAATGTTTTCTC 60.023 45.833 0.00 0.00 0.00 2.87
2848 7115 3.891366 CCAGACCTCCACAAATGTTTTCT 59.109 43.478 0.00 0.00 0.00 2.52
2849 7116 3.888930 TCCAGACCTCCACAAATGTTTTC 59.111 43.478 0.00 0.00 0.00 2.29
2850 7117 3.909732 TCCAGACCTCCACAAATGTTTT 58.090 40.909 0.00 0.00 0.00 2.43
2851 7118 3.593442 TCCAGACCTCCACAAATGTTT 57.407 42.857 0.00 0.00 0.00 2.83
2852 7119 3.593442 TTCCAGACCTCCACAAATGTT 57.407 42.857 0.00 0.00 0.00 2.71
2853 7120 3.593442 TTTCCAGACCTCCACAAATGT 57.407 42.857 0.00 0.00 0.00 2.71
2854 7121 4.144297 TCTTTTCCAGACCTCCACAAATG 58.856 43.478 0.00 0.00 0.00 2.32
2855 7122 4.453480 TCTTTTCCAGACCTCCACAAAT 57.547 40.909 0.00 0.00 0.00 2.32
2856 7123 3.943671 TCTTTTCCAGACCTCCACAAA 57.056 42.857 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.