Multiple sequence alignment - TraesCS7D01G454600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G454600 chr7D 100.000 3916 0 0 1 3916 573832144 573828229 0.000000e+00 7232
1 TraesCS7D01G454600 chr7D 89.062 320 29 4 2615 2929 573718961 573718643 3.670000e-105 392
2 TraesCS7D01G454600 chr7B 88.822 2317 126 58 314 2551 632662548 632660286 0.000000e+00 2721
3 TraesCS7D01G454600 chr7B 91.312 541 19 12 2651 3179 632660288 632659764 0.000000e+00 713
4 TraesCS7D01G454600 chr7B 88.141 312 28 4 4 308 632662943 632662634 2.880000e-96 363
5 TraesCS7D01G454600 chr7B 82.553 470 24 23 3450 3915 632659618 632659203 1.030000e-95 361
6 TraesCS7D01G454600 chr7B 80.237 506 52 28 2627 3112 632496171 632495694 1.740000e-88 337
7 TraesCS7D01G454600 chr7B 93.069 202 12 2 3227 3426 570376438 570376237 1.060000e-75 294
8 TraesCS7D01G454600 chr7A 88.103 1824 117 56 758 2551 663537777 663536024 0.000000e+00 2074
9 TraesCS7D01G454600 chr7A 95.956 272 10 1 2651 2922 663536026 663535756 1.290000e-119 440
10 TraesCS7D01G454600 chr7A 87.037 216 15 8 566 772 663538007 663537796 8.460000e-57 231
11 TraesCS7D01G454600 chr3A 94.059 202 11 1 3226 3426 227371295 227371094 4.920000e-79 305
12 TraesCS7D01G454600 chr6B 93.069 202 12 2 3227 3426 610081952 610081751 1.060000e-75 294
13 TraesCS7D01G454600 chr6B 89.076 119 9 1 2041 2155 107629534 107629652 1.130000e-30 145
14 TraesCS7D01G454600 chr5B 92.683 205 13 2 3224 3426 679004271 679004475 1.060000e-75 294
15 TraesCS7D01G454600 chr5B 87.395 119 11 1 2041 2155 53322996 53323114 2.450000e-27 134
16 TraesCS7D01G454600 chr1D 92.611 203 13 2 3226 3426 411519739 411519537 1.380000e-74 291
17 TraesCS7D01G454600 chr5A 94.211 190 10 1 3238 3426 496034228 496034417 4.950000e-74 289
18 TraesCS7D01G454600 chr4A 92.574 202 13 2 3227 3426 742707743 742707542 4.950000e-74 289
19 TraesCS7D01G454600 chr4A 85.714 161 19 4 2606 2762 193108851 193108691 2.420000e-37 167
20 TraesCS7D01G454600 chr3B 92.574 202 13 2 3227 3426 473179784 473179583 4.950000e-74 289
21 TraesCS7D01G454600 chr3B 89.076 119 9 1 2041 2155 759966612 759966494 1.130000e-30 145
22 TraesCS7D01G454600 chr4B 86.194 268 33 2 1562 1829 1730245 1729982 1.780000e-73 287
23 TraesCS7D01G454600 chr2A 92.079 202 14 2 3227 3426 8390723 8390522 2.300000e-72 283
24 TraesCS7D01G454600 chr2B 84.701 268 37 2 1562 1829 722016972 722017235 8.340000e-67 265


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G454600 chr7D 573828229 573832144 3915 True 7232.0 7232 100.000000 1 3916 1 chr7D.!!$R2 3915
1 TraesCS7D01G454600 chr7B 632659203 632662943 3740 True 1039.5 2721 87.707000 4 3915 4 chr7B.!!$R3 3911
2 TraesCS7D01G454600 chr7A 663535756 663538007 2251 True 915.0 2074 90.365333 566 2922 3 chr7A.!!$R1 2356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 1175 0.030369 GTCTGTCGTCGTTGTGAGGT 59.970 55.0 0.0 0.0 34.12 3.85 F
2628 2876 0.528017 GCTGATGACTGACCGACTGA 59.472 55.0 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2637 2885 0.107703 TCGCCCTGGATGAATGTCAC 60.108 55.0 0.0 0.0 0.00 3.67 R
3589 3923 0.034059 CGTCAGACTTGAGTTGGGCT 59.966 55.0 0.0 0.0 32.98 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 62 0.034380 TACGACCTACTGGAGCTGCT 60.034 55.000 6.82 0.00 37.04 4.24
98 101 1.435577 ACCGAATGCGTACTTGTTCC 58.564 50.000 0.00 0.00 35.23 3.62
106 109 1.529865 GCGTACTTGTTCCTTCACCAC 59.470 52.381 0.00 0.00 0.00 4.16
108 111 3.199677 CGTACTTGTTCCTTCACCACAA 58.800 45.455 0.00 0.00 0.00 3.33
113 116 6.783708 ACTTGTTCCTTCACCACAAATAAA 57.216 33.333 0.00 0.00 30.15 1.40
184 191 7.271511 TCTTTTATTTCTCCAGCTTGCAAAAA 58.728 30.769 0.00 0.00 0.00 1.94
186 193 3.457610 TTTCTCCAGCTTGCAAAAAGG 57.542 42.857 0.00 2.33 0.00 3.11
187 194 0.675633 TCTCCAGCTTGCAAAAAGGC 59.324 50.000 0.00 0.00 0.00 4.35
188 195 0.320160 CTCCAGCTTGCAAAAAGGCC 60.320 55.000 0.00 0.00 0.00 5.19
189 196 1.047596 TCCAGCTTGCAAAAAGGCCA 61.048 50.000 5.01 0.00 0.00 5.36
193 200 1.551883 AGCTTGCAAAAAGGCCATAGG 59.448 47.619 5.01 0.00 0.00 2.57
205 212 2.118132 CCATAGGCAATGCACCACC 58.882 57.895 7.79 0.00 33.92 4.61
214 221 3.353029 TGCACCACCGAATGCACG 61.353 61.111 0.00 0.00 46.63 5.34
215 222 3.047280 GCACCACCGAATGCACGA 61.047 61.111 0.00 0.00 41.65 4.35
217 224 1.425031 CACCACCGAATGCACGATG 59.575 57.895 0.00 0.00 35.09 3.84
226 233 4.051237 CCGAATGCACGATGATCTTAGAA 58.949 43.478 0.00 0.00 35.09 2.10
247 254 6.845908 AGAATATGAACATATGACTTGGCCT 58.154 36.000 10.38 0.00 34.45 5.19
255 262 2.789409 ATGACTTGGCCTAGGACAAC 57.211 50.000 27.00 17.93 38.36 3.32
266 273 4.681978 GGACAACGGACGCCTGCT 62.682 66.667 0.00 0.00 0.00 4.24
267 274 2.665185 GACAACGGACGCCTGCTT 60.665 61.111 0.00 0.00 0.00 3.91
284 291 3.698040 CTGCTTCAAATCATAGGCCAACT 59.302 43.478 5.01 0.00 0.00 3.16
292 299 2.820178 TCATAGGCCAACTCAGACAGA 58.180 47.619 5.01 0.00 0.00 3.41
308 315 1.302033 AGAGCGCACCTGTTCCTTG 60.302 57.895 11.47 0.00 0.00 3.61
310 317 2.281484 GCGCACCTGTTCCTTGGA 60.281 61.111 0.30 0.00 0.00 3.53
311 318 1.896660 GCGCACCTGTTCCTTGGAA 60.897 57.895 0.30 0.00 0.00 3.53
312 319 1.949257 CGCACCTGTTCCTTGGAAC 59.051 57.895 21.83 21.83 35.75 3.62
337 424 1.466167 AGCTTGCAATTAGCTGTGACG 59.534 47.619 10.56 0.00 46.71 4.35
344 431 3.546815 GCAATTAGCTGTGACGCCATAAG 60.547 47.826 0.00 0.00 41.15 1.73
348 435 0.734889 GCTGTGACGCCATAAGCAAT 59.265 50.000 4.81 0.00 44.04 3.56
354 441 2.806929 GCCATAAGCAATGCGCCA 59.193 55.556 4.18 0.00 44.04 5.69
359 446 2.098934 CCATAAGCAATGCGCCACTAAA 59.901 45.455 4.18 0.00 44.04 1.85
391 478 9.623350 TGACATAAATTTCATATTGTGTGTGTG 57.377 29.630 0.00 0.00 32.07 3.82
392 479 9.838975 GACATAAATTTCATATTGTGTGTGTGA 57.161 29.630 0.00 0.00 32.07 3.58
396 483 8.939201 AAATTTCATATTGTGTGTGTGAACAA 57.061 26.923 0.00 0.00 40.36 2.83
397 484 9.545105 AAATTTCATATTGTGTGTGTGAACAAT 57.455 25.926 6.32 6.32 46.15 2.71
400 487 7.139896 TCATATTGTGTGTGTGAACAATACC 57.860 36.000 9.68 0.00 46.51 2.73
401 488 3.953874 TTGTGTGTGTGAACAATACCG 57.046 42.857 0.00 0.00 31.52 4.02
403 490 2.609916 TGTGTGTGTGAACAATACCGTG 59.390 45.455 0.00 0.00 0.00 4.94
404 491 2.867368 GTGTGTGTGAACAATACCGTGA 59.133 45.455 0.00 0.00 0.00 4.35
405 492 2.867368 TGTGTGTGAACAATACCGTGAC 59.133 45.455 0.00 0.00 0.00 3.67
406 493 3.128349 GTGTGTGAACAATACCGTGACT 58.872 45.455 0.00 0.00 0.00 3.41
407 494 3.558418 GTGTGTGAACAATACCGTGACTT 59.442 43.478 0.00 0.00 0.00 3.01
408 495 3.558006 TGTGTGAACAATACCGTGACTTG 59.442 43.478 0.00 0.00 0.00 3.16
409 496 3.059188 GTGTGAACAATACCGTGACTTGG 60.059 47.826 0.00 0.00 0.00 3.61
441 541 8.270744 ACTAGCAAGAACAAGAAATATCCTCAT 58.729 33.333 0.00 0.00 0.00 2.90
442 542 7.565323 AGCAAGAACAAGAAATATCCTCATC 57.435 36.000 0.00 0.00 0.00 2.92
443 543 7.114754 AGCAAGAACAAGAAATATCCTCATCA 58.885 34.615 0.00 0.00 0.00 3.07
444 544 7.613022 AGCAAGAACAAGAAATATCCTCATCAA 59.387 33.333 0.00 0.00 0.00 2.57
445 545 8.246180 GCAAGAACAAGAAATATCCTCATCAAA 58.754 33.333 0.00 0.00 0.00 2.69
461 561 8.517878 TCCTCATCAAAAAGATAAAGCAAGAAG 58.482 33.333 0.00 0.00 34.43 2.85
491 591 2.954753 GCTGTCAGGTCAAACGCCG 61.955 63.158 1.14 0.00 0.00 6.46
510 618 2.621338 CGAGCTGGCAGTCAGATTTAA 58.379 47.619 17.16 0.00 42.92 1.52
512 620 4.371786 CGAGCTGGCAGTCAGATTTAATA 58.628 43.478 17.16 0.00 42.92 0.98
515 623 6.646653 CGAGCTGGCAGTCAGATTTAATAATA 59.353 38.462 17.16 0.00 42.92 0.98
516 624 7.148672 CGAGCTGGCAGTCAGATTTAATAATAG 60.149 40.741 17.16 0.00 42.92 1.73
517 625 6.429385 AGCTGGCAGTCAGATTTAATAATAGC 59.571 38.462 17.16 0.00 46.18 2.97
519 627 7.255242 GCTGGCAGTCAGATTTAATAATAGCAA 60.255 37.037 17.16 0.00 46.18 3.91
553 666 0.179097 GGCCCAACAAACAAAAGCGA 60.179 50.000 0.00 0.00 0.00 4.93
567 680 6.272698 ACAAAAGCGAATCAATCAAACAAC 57.727 33.333 0.00 0.00 0.00 3.32
569 682 6.312426 ACAAAAGCGAATCAATCAAACAACAA 59.688 30.769 0.00 0.00 0.00 2.83
593 723 3.988976 ACAGCCTAGCATCTTTCTCAA 57.011 42.857 0.00 0.00 0.00 3.02
907 1088 1.528309 ACCACCAAAGCCACCTTCG 60.528 57.895 0.00 0.00 0.00 3.79
923 1119 4.662961 CGCCTCTGACACCGCACA 62.663 66.667 0.00 0.00 0.00 4.57
933 1135 1.811266 CACCGCACAGGAATCTCCG 60.811 63.158 0.00 0.00 42.75 4.63
939 1141 0.462759 CACAGGAATCTCCGGCCTTC 60.463 60.000 0.00 0.00 42.75 3.46
941 1143 0.543749 CAGGAATCTCCGGCCTTCTT 59.456 55.000 0.00 0.00 42.75 2.52
942 1144 1.065126 CAGGAATCTCCGGCCTTCTTT 60.065 52.381 0.00 0.00 42.75 2.52
943 1145 1.065126 AGGAATCTCCGGCCTTCTTTG 60.065 52.381 0.00 0.00 42.75 2.77
944 1146 0.735471 GAATCTCCGGCCTTCTTTGC 59.265 55.000 0.00 0.00 0.00 3.68
947 1149 0.110486 TCTCCGGCCTTCTTTGCTTT 59.890 50.000 0.00 0.00 0.00 3.51
948 1150 0.242017 CTCCGGCCTTCTTTGCTTTG 59.758 55.000 0.00 0.00 0.00 2.77
949 1151 1.373371 CCGGCCTTCTTTGCTTTGC 60.373 57.895 0.00 0.00 0.00 3.68
951 1153 0.387750 CGGCCTTCTTTGCTTTGCTC 60.388 55.000 0.00 0.00 0.00 4.26
952 1154 0.387750 GGCCTTCTTTGCTTTGCTCG 60.388 55.000 0.00 0.00 0.00 5.03
953 1155 1.005804 GCCTTCTTTGCTTTGCTCGC 61.006 55.000 0.00 0.00 0.00 5.03
954 1156 0.727122 CCTTCTTTGCTTTGCTCGCG 60.727 55.000 0.00 0.00 0.00 5.87
955 1157 0.040958 CTTCTTTGCTTTGCTCGCGT 60.041 50.000 5.77 0.00 0.00 6.01
956 1158 0.041312 TTCTTTGCTTTGCTCGCGTC 60.041 50.000 5.77 0.00 0.00 5.19
960 1162 1.831389 TTGCTTTGCTCGCGTCTGTC 61.831 55.000 5.77 0.00 0.00 3.51
961 1163 2.765785 CTTTGCTCGCGTCTGTCG 59.234 61.111 5.77 0.00 43.12 4.35
963 1165 1.935065 CTTTGCTCGCGTCTGTCGTC 61.935 60.000 5.77 0.00 42.13 4.20
964 1166 4.736631 TGCTCGCGTCTGTCGTCG 62.737 66.667 5.77 1.22 42.13 5.12
965 1167 4.738345 GCTCGCGTCTGTCGTCGT 62.738 66.667 5.77 0.00 42.13 4.34
966 1168 2.127345 CTCGCGTCTGTCGTCGTT 60.127 61.111 5.77 0.00 42.13 3.85
967 1169 2.418333 CTCGCGTCTGTCGTCGTTG 61.418 63.158 5.77 3.52 42.13 4.10
968 1170 2.724721 CGCGTCTGTCGTCGTTGT 60.725 61.111 0.00 0.00 42.13 3.32
969 1171 2.837280 GCGTCTGTCGTCGTTGTG 59.163 61.111 0.00 0.00 42.13 3.33
970 1172 1.656263 GCGTCTGTCGTCGTTGTGA 60.656 57.895 0.00 0.00 42.13 3.58
971 1173 1.597700 GCGTCTGTCGTCGTTGTGAG 61.598 60.000 0.00 0.00 42.13 3.51
972 1174 0.997226 CGTCTGTCGTCGTTGTGAGG 60.997 60.000 0.00 0.00 34.52 3.86
973 1175 0.030369 GTCTGTCGTCGTTGTGAGGT 59.970 55.000 0.00 0.00 34.12 3.85
975 1177 1.135527 TCTGTCGTCGTTGTGAGGTTT 59.864 47.619 0.00 0.00 34.12 3.27
976 1178 1.521423 CTGTCGTCGTTGTGAGGTTTC 59.479 52.381 0.00 0.00 34.12 2.78
978 1180 2.199236 GTCGTCGTTGTGAGGTTTCTT 58.801 47.619 0.00 0.00 34.12 2.52
979 1181 2.034001 GTCGTCGTTGTGAGGTTTCTTG 60.034 50.000 0.00 0.00 34.12 3.02
981 1183 2.350498 CGTCGTTGTGAGGTTTCTTGTT 59.650 45.455 0.00 0.00 0.00 2.83
982 1184 3.680789 GTCGTTGTGAGGTTTCTTGTTG 58.319 45.455 0.00 0.00 0.00 3.33
983 1185 3.372822 GTCGTTGTGAGGTTTCTTGTTGA 59.627 43.478 0.00 0.00 0.00 3.18
985 1187 3.374058 CGTTGTGAGGTTTCTTGTTGAGT 59.626 43.478 0.00 0.00 0.00 3.41
986 1188 4.662145 GTTGTGAGGTTTCTTGTTGAGTG 58.338 43.478 0.00 0.00 0.00 3.51
987 1189 4.214986 TGTGAGGTTTCTTGTTGAGTGA 57.785 40.909 0.00 0.00 0.00 3.41
988 1190 3.938963 TGTGAGGTTTCTTGTTGAGTGAC 59.061 43.478 0.00 0.00 0.00 3.67
989 1191 4.192317 GTGAGGTTTCTTGTTGAGTGACT 58.808 43.478 0.00 0.00 0.00 3.41
990 1192 4.034510 GTGAGGTTTCTTGTTGAGTGACTG 59.965 45.833 0.00 0.00 0.00 3.51
991 1193 4.081142 TGAGGTTTCTTGTTGAGTGACTGA 60.081 41.667 0.00 0.00 0.00 3.41
992 1194 4.192317 AGGTTTCTTGTTGAGTGACTGAC 58.808 43.478 0.00 0.00 0.00 3.51
993 1195 3.312697 GGTTTCTTGTTGAGTGACTGACC 59.687 47.826 0.00 0.00 0.00 4.02
994 1196 2.509052 TCTTGTTGAGTGACTGACCG 57.491 50.000 0.00 0.00 0.00 4.79
995 1197 1.068588 TCTTGTTGAGTGACTGACCGG 59.931 52.381 0.00 0.00 0.00 5.28
1062 1264 3.382832 CCGGCGAAGGAGGTGAGT 61.383 66.667 9.30 0.00 0.00 3.41
1231 1433 2.357517 AGGGCAAGCTGTTCGACG 60.358 61.111 0.00 0.00 0.00 5.12
1232 1434 2.357034 GGGCAAGCTGTTCGACGA 60.357 61.111 0.00 0.00 0.00 4.20
1259 1461 2.328099 CCAGCGTCAAGGTCAAGGC 61.328 63.158 0.00 0.00 0.00 4.35
1270 1472 2.035442 GTCAAGGCGAAGGTGGAGC 61.035 63.158 0.00 0.00 0.00 4.70
1389 1603 2.292785 TGCTGAGGAGAAGAAGGAGGAT 60.293 50.000 0.00 0.00 0.00 3.24
1445 1674 3.322466 CAAGGAGGAGGTGGCCGT 61.322 66.667 0.00 0.00 0.00 5.68
1446 1675 3.322466 AAGGAGGAGGTGGCCGTG 61.322 66.667 0.00 0.00 0.00 4.94
1511 1740 3.394836 GAAGCAGGAGGAGGCCGT 61.395 66.667 0.00 0.00 0.00 5.68
1531 1760 4.521062 CGGCCGAGGAGAAGCAGG 62.521 72.222 24.07 0.00 0.00 4.85
1532 1761 3.077556 GGCCGAGGAGAAGCAGGA 61.078 66.667 0.00 0.00 0.00 3.86
1533 1762 2.498726 GCCGAGGAGAAGCAGGAG 59.501 66.667 0.00 0.00 0.00 3.69
1534 1763 3.087666 GCCGAGGAGAAGCAGGAGG 62.088 68.421 0.00 0.00 0.00 4.30
1535 1764 1.380515 CCGAGGAGAAGCAGGAGGA 60.381 63.158 0.00 0.00 0.00 3.71
1536 1765 1.391157 CCGAGGAGAAGCAGGAGGAG 61.391 65.000 0.00 0.00 0.00 3.69
1537 1766 1.391157 CGAGGAGAAGCAGGAGGAGG 61.391 65.000 0.00 0.00 0.00 4.30
1538 1767 1.685355 GAGGAGAAGCAGGAGGAGGC 61.685 65.000 0.00 0.00 0.00 4.70
1773 2020 4.812476 TTCGACATGCTCCGCCGG 62.812 66.667 0.00 0.00 0.00 6.13
1956 2203 3.181967 GTGTACAGGAGCGCGCTG 61.182 66.667 41.82 27.72 0.00 5.18
2218 2466 4.160252 ACATTTCGATTTCATTCCCCCAAG 59.840 41.667 0.00 0.00 0.00 3.61
2250 2498 2.662006 TTGCTTCGAGATCTGACTGG 57.338 50.000 0.00 0.00 0.00 4.00
2257 2505 5.405935 TTCGAGATCTGACTGGATTTTCA 57.594 39.130 0.00 0.00 0.00 2.69
2469 2717 4.695231 ACGGCGACACGGAGTTCG 62.695 66.667 16.62 0.00 41.61 3.95
2514 2762 2.915659 AGGTGGTCGTCAAGGCGA 60.916 61.111 0.00 0.00 38.68 5.54
2515 2763 2.029964 GGTGGTCGTCAAGGCGAA 59.970 61.111 0.00 0.00 42.82 4.70
2525 2773 1.301401 CAAGGCGAACTCCACCGAA 60.301 57.895 0.00 0.00 0.00 4.30
2549 2797 4.335584 GAGATCGAGGCCGCCGAG 62.336 72.222 23.46 2.04 39.55 4.63
2555 2803 4.162690 GAGGCCGCCGAGGTGATT 62.163 66.667 3.05 0.00 43.70 2.57
2556 2804 2.762459 AGGCCGCCGAGGTGATTA 60.762 61.111 3.05 0.00 43.70 1.75
2557 2805 2.588034 GGCCGCCGAGGTGATTAC 60.588 66.667 3.95 0.00 43.70 1.89
2558 2806 2.185867 GCCGCCGAGGTGATTACA 59.814 61.111 3.95 0.00 43.70 2.41
2559 2807 1.448893 GCCGCCGAGGTGATTACAA 60.449 57.895 3.95 0.00 43.70 2.41
2560 2808 1.022451 GCCGCCGAGGTGATTACAAA 61.022 55.000 3.95 0.00 43.70 2.83
2561 2809 1.663695 CCGCCGAGGTGATTACAAAT 58.336 50.000 3.95 0.00 34.51 2.32
2562 2810 1.330521 CCGCCGAGGTGATTACAAATG 59.669 52.381 3.95 0.00 34.51 2.32
2563 2811 1.330521 CGCCGAGGTGATTACAAATGG 59.669 52.381 0.00 0.00 0.00 3.16
2564 2812 2.639065 GCCGAGGTGATTACAAATGGA 58.361 47.619 0.00 0.00 0.00 3.41
2565 2813 3.013921 GCCGAGGTGATTACAAATGGAA 58.986 45.455 0.00 0.00 0.00 3.53
2566 2814 3.442273 GCCGAGGTGATTACAAATGGAAA 59.558 43.478 0.00 0.00 0.00 3.13
2567 2815 4.082463 GCCGAGGTGATTACAAATGGAAAA 60.082 41.667 0.00 0.00 0.00 2.29
2568 2816 5.640732 CCGAGGTGATTACAAATGGAAAAG 58.359 41.667 0.00 0.00 0.00 2.27
2569 2817 5.414454 CCGAGGTGATTACAAATGGAAAAGA 59.586 40.000 0.00 0.00 0.00 2.52
2570 2818 6.072175 CCGAGGTGATTACAAATGGAAAAGAA 60.072 38.462 0.00 0.00 0.00 2.52
2571 2819 7.367285 CGAGGTGATTACAAATGGAAAAGAAA 58.633 34.615 0.00 0.00 0.00 2.52
2572 2820 7.326063 CGAGGTGATTACAAATGGAAAAGAAAC 59.674 37.037 0.00 0.00 0.00 2.78
2573 2821 8.250143 AGGTGATTACAAATGGAAAAGAAACT 57.750 30.769 0.00 0.00 0.00 2.66
2574 2822 8.704668 AGGTGATTACAAATGGAAAAGAAACTT 58.295 29.630 0.00 0.00 0.00 2.66
2575 2823 8.764287 GGTGATTACAAATGGAAAAGAAACTTG 58.236 33.333 0.00 0.00 0.00 3.16
2576 2824 9.313118 GTGATTACAAATGGAAAAGAAACTTGT 57.687 29.630 0.00 0.00 0.00 3.16
2577 2825 9.311916 TGATTACAAATGGAAAAGAAACTTGTG 57.688 29.630 0.00 0.00 0.00 3.33
2578 2826 9.528018 GATTACAAATGGAAAAGAAACTTGTGA 57.472 29.630 0.00 0.00 0.00 3.58
2580 2828 9.883142 TTACAAATGGAAAAGAAACTTGTGATT 57.117 25.926 0.00 0.00 0.00 2.57
2581 2829 8.791327 ACAAATGGAAAAGAAACTTGTGATTT 57.209 26.923 0.00 0.00 0.00 2.17
2582 2830 9.230122 ACAAATGGAAAAGAAACTTGTGATTTT 57.770 25.926 0.00 0.00 0.00 1.82
2583 2831 9.493206 CAAATGGAAAAGAAACTTGTGATTTTG 57.507 29.630 0.00 0.00 0.00 2.44
2584 2832 6.660887 TGGAAAAGAAACTTGTGATTTTGC 57.339 33.333 0.00 0.00 33.45 3.68
2585 2833 6.405538 TGGAAAAGAAACTTGTGATTTTGCT 58.594 32.000 0.00 0.00 33.83 3.91
2586 2834 7.551585 TGGAAAAGAAACTTGTGATTTTGCTA 58.448 30.769 0.00 0.00 33.83 3.49
2587 2835 7.491048 TGGAAAAGAAACTTGTGATTTTGCTAC 59.509 33.333 0.00 0.00 33.83 3.58
2588 2836 7.491048 GGAAAAGAAACTTGTGATTTTGCTACA 59.509 33.333 0.00 0.00 31.14 2.74
2589 2837 7.755582 AAAGAAACTTGTGATTTTGCTACAC 57.244 32.000 0.00 0.00 35.45 2.90
2590 2838 5.831997 AGAAACTTGTGATTTTGCTACACC 58.168 37.500 0.00 0.00 34.18 4.16
2591 2839 5.359576 AGAAACTTGTGATTTTGCTACACCA 59.640 36.000 0.00 0.00 34.18 4.17
2592 2840 4.568152 ACTTGTGATTTTGCTACACCAC 57.432 40.909 0.00 0.00 34.18 4.16
2593 2841 3.003275 ACTTGTGATTTTGCTACACCACG 59.997 43.478 0.00 0.00 34.18 4.94
2594 2842 1.265635 TGTGATTTTGCTACACCACGC 59.734 47.619 0.00 0.00 34.18 5.34
2595 2843 1.535462 GTGATTTTGCTACACCACGCT 59.465 47.619 0.00 0.00 0.00 5.07
2596 2844 1.535028 TGATTTTGCTACACCACGCTG 59.465 47.619 0.00 0.00 0.00 5.18
2597 2845 1.804151 GATTTTGCTACACCACGCTGA 59.196 47.619 0.00 0.00 0.00 4.26
2598 2846 1.669604 TTTTGCTACACCACGCTGAA 58.330 45.000 0.00 0.00 0.00 3.02
2599 2847 1.890876 TTTGCTACACCACGCTGAAT 58.109 45.000 0.00 0.00 0.00 2.57
2600 2848 1.890876 TTGCTACACCACGCTGAATT 58.109 45.000 0.00 0.00 0.00 2.17
2601 2849 1.890876 TGCTACACCACGCTGAATTT 58.109 45.000 0.00 0.00 0.00 1.82
2602 2850 1.535028 TGCTACACCACGCTGAATTTG 59.465 47.619 0.00 0.00 0.00 2.32
2603 2851 1.535462 GCTACACCACGCTGAATTTGT 59.465 47.619 0.00 0.00 0.00 2.83
2604 2852 2.031157 GCTACACCACGCTGAATTTGTT 60.031 45.455 0.00 0.00 0.00 2.83
2605 2853 2.774439 ACACCACGCTGAATTTGTTC 57.226 45.000 0.00 0.00 0.00 3.18
2606 2854 2.020720 ACACCACGCTGAATTTGTTCA 58.979 42.857 0.00 0.00 0.00 3.18
2617 2865 5.618056 TGAATTTGTTCAGAGCTGATGAC 57.382 39.130 0.37 0.00 39.64 3.06
2618 2866 5.311265 TGAATTTGTTCAGAGCTGATGACT 58.689 37.500 0.37 0.00 39.64 3.41
2619 2867 5.180680 TGAATTTGTTCAGAGCTGATGACTG 59.819 40.000 0.37 0.00 39.64 3.51
2620 2868 4.341366 TTTGTTCAGAGCTGATGACTGA 57.659 40.909 0.37 0.00 39.64 3.41
2621 2869 3.309961 TGTTCAGAGCTGATGACTGAC 57.690 47.619 0.37 0.00 39.80 3.51
2622 2870 2.028658 TGTTCAGAGCTGATGACTGACC 60.029 50.000 0.37 0.00 39.80 4.02
2623 2871 0.813821 TCAGAGCTGATGACTGACCG 59.186 55.000 0.00 0.00 36.04 4.79
2624 2872 0.813821 CAGAGCTGATGACTGACCGA 59.186 55.000 0.00 0.00 34.07 4.69
2625 2873 0.814457 AGAGCTGATGACTGACCGAC 59.186 55.000 0.00 0.00 0.00 4.79
2626 2874 0.814457 GAGCTGATGACTGACCGACT 59.186 55.000 0.00 0.00 0.00 4.18
2627 2875 0.529833 AGCTGATGACTGACCGACTG 59.470 55.000 0.00 0.00 0.00 3.51
2628 2876 0.528017 GCTGATGACTGACCGACTGA 59.472 55.000 0.00 0.00 0.00 3.41
2629 2877 1.067565 GCTGATGACTGACCGACTGAA 60.068 52.381 0.00 0.00 0.00 3.02
2630 2878 2.417924 GCTGATGACTGACCGACTGAAT 60.418 50.000 0.00 0.00 0.00 2.57
2631 2879 3.854666 CTGATGACTGACCGACTGAATT 58.145 45.455 0.00 0.00 0.00 2.17
2632 2880 4.248859 CTGATGACTGACCGACTGAATTT 58.751 43.478 0.00 0.00 0.00 1.82
2633 2881 3.996363 TGATGACTGACCGACTGAATTTG 59.004 43.478 0.00 0.00 0.00 2.32
2634 2882 3.469008 TGACTGACCGACTGAATTTGT 57.531 42.857 0.00 0.00 0.00 2.83
2635 2883 3.390135 TGACTGACCGACTGAATTTGTC 58.610 45.455 0.00 3.37 0.00 3.18
2636 2884 3.069586 TGACTGACCGACTGAATTTGTCT 59.930 43.478 9.71 0.00 32.70 3.41
2637 2885 3.393800 ACTGACCGACTGAATTTGTCTG 58.606 45.455 9.71 6.67 32.70 3.51
2638 2886 3.181465 ACTGACCGACTGAATTTGTCTGT 60.181 43.478 8.51 8.51 40.81 3.41
2639 2887 3.130633 TGACCGACTGAATTTGTCTGTG 58.869 45.455 11.92 4.37 38.44 3.66
2640 2888 3.181470 TGACCGACTGAATTTGTCTGTGA 60.181 43.478 11.92 4.21 38.44 3.58
2641 2889 3.131396 ACCGACTGAATTTGTCTGTGAC 58.869 45.455 8.13 0.00 38.44 3.67
2642 2890 3.130633 CCGACTGAATTTGTCTGTGACA 58.869 45.455 9.71 0.00 41.09 3.58
2643 2891 3.748048 CCGACTGAATTTGTCTGTGACAT 59.252 43.478 1.05 0.00 42.40 3.06
2644 2892 4.214119 CCGACTGAATTTGTCTGTGACATT 59.786 41.667 1.05 0.00 42.40 2.71
2645 2893 5.377358 CGACTGAATTTGTCTGTGACATTC 58.623 41.667 1.05 4.58 42.40 2.67
2646 2894 5.050159 CGACTGAATTTGTCTGTGACATTCA 60.050 40.000 12.93 12.93 42.40 2.57
2647 2895 6.347969 CGACTGAATTTGTCTGTGACATTCAT 60.348 38.462 13.58 7.42 42.40 2.57
2648 2896 6.906659 ACTGAATTTGTCTGTGACATTCATC 58.093 36.000 13.58 6.72 42.40 2.92
2649 2897 6.072286 ACTGAATTTGTCTGTGACATTCATCC 60.072 38.462 13.58 0.60 42.40 3.51
2763 3011 2.894257 ATCGTGGTGAGCAAGGGCA 61.894 57.895 0.00 0.00 44.61 5.36
2931 3179 7.663081 AGAAGTGCTGAAGAAAGTGATGATAAA 59.337 33.333 0.00 0.00 0.00 1.40
2941 3189 9.638176 AAGAAAGTGATGATAAATTATGAGGCT 57.362 29.630 0.00 0.00 0.00 4.58
2942 3190 9.638176 AGAAAGTGATGATAAATTATGAGGCTT 57.362 29.630 0.00 0.00 0.00 4.35
2945 3193 8.174733 AGTGATGATAAATTATGAGGCTTTGG 57.825 34.615 0.00 0.00 0.00 3.28
2946 3194 7.232127 AGTGATGATAAATTATGAGGCTTTGGG 59.768 37.037 0.00 0.00 0.00 4.12
2947 3195 6.494491 TGATGATAAATTATGAGGCTTTGGGG 59.506 38.462 0.00 0.00 0.00 4.96
2948 3196 5.147032 TGATAAATTATGAGGCTTTGGGGG 58.853 41.667 0.00 0.00 0.00 5.40
3022 3282 6.959361 TCAATTCTTTTGTGCAAGAGAGTAC 58.041 36.000 5.52 0.00 33.81 2.73
3023 3283 6.767902 TCAATTCTTTTGTGCAAGAGAGTACT 59.232 34.615 0.00 0.00 33.81 2.73
3050 3310 2.955660 AGGGGTACATTGTGTTGTGTTG 59.044 45.455 0.00 0.00 0.00 3.33
3051 3311 2.691011 GGGGTACATTGTGTTGTGTTGT 59.309 45.455 0.00 0.00 0.00 3.32
3052 3312 3.490078 GGGGTACATTGTGTTGTGTTGTG 60.490 47.826 0.00 0.00 0.00 3.33
3053 3313 3.129638 GGGTACATTGTGTTGTGTTGTGT 59.870 43.478 0.00 0.00 0.00 3.72
3054 3314 4.381079 GGGTACATTGTGTTGTGTTGTGTT 60.381 41.667 0.00 0.00 0.00 3.32
3068 3328 1.210155 GTGTTTGGCGAGCACCATC 59.790 57.895 10.37 0.00 40.13 3.51
3082 3342 2.562298 GCACCATCCTTTTGTCATGGAA 59.438 45.455 4.18 0.00 39.73 3.53
3083 3343 3.196254 GCACCATCCTTTTGTCATGGAAT 59.804 43.478 4.18 0.00 39.73 3.01
3084 3344 4.322953 GCACCATCCTTTTGTCATGGAATT 60.323 41.667 4.18 0.00 39.73 2.17
3124 3384 9.752228 AATATAAAGAGGTTTTTACCCGGTTAA 57.248 29.630 0.00 0.00 0.00 2.01
3125 3385 9.752228 ATATAAAGAGGTTTTTACCCGGTTAAA 57.248 29.630 0.00 0.00 0.00 1.52
3126 3386 6.395426 AAAGAGGTTTTTACCCGGTTAAAG 57.605 37.500 4.27 0.00 0.00 1.85
3127 3387 5.052693 AGAGGTTTTTACCCGGTTAAAGT 57.947 39.130 4.27 0.00 0.00 2.66
3128 3388 5.448654 AGAGGTTTTTACCCGGTTAAAGTT 58.551 37.500 4.27 0.00 0.00 2.66
3129 3389 5.893255 AGAGGTTTTTACCCGGTTAAAGTTT 59.107 36.000 4.27 0.00 0.00 2.66
3130 3390 7.059788 AGAGGTTTTTACCCGGTTAAAGTTTA 58.940 34.615 4.27 0.00 0.00 2.01
3132 3392 7.660112 AGGTTTTTACCCGGTTAAAGTTTATG 58.340 34.615 4.27 0.00 0.00 1.90
3137 3402 2.425668 CCCGGTTAAAGTTTATGCCCTG 59.574 50.000 0.00 0.00 0.00 4.45
3146 3411 3.844640 AGTTTATGCCCTGTTTTCCAGT 58.155 40.909 0.00 0.00 39.74 4.00
3152 3417 2.627699 TGCCCTGTTTTCCAGTGAAATC 59.372 45.455 0.00 0.00 40.08 2.17
3158 3423 3.888930 TGTTTTCCAGTGAAATCAGGACC 59.111 43.478 0.00 0.00 40.08 4.46
3171 3436 1.819288 TCAGGACCGAGATTCAGTGAC 59.181 52.381 0.00 0.00 0.00 3.67
3176 3441 1.276138 ACCGAGATTCAGTGACATGCA 59.724 47.619 0.00 0.00 0.00 3.96
3179 3444 3.002042 CCGAGATTCAGTGACATGCAATC 59.998 47.826 0.00 0.00 0.00 2.67
3180 3445 3.619929 CGAGATTCAGTGACATGCAATCA 59.380 43.478 0.00 0.00 0.00 2.57
3181 3446 4.272748 CGAGATTCAGTGACATGCAATCAT 59.727 41.667 7.24 0.00 0.00 2.45
3201 3483 4.716003 CCCCCTCTTTTCGACACC 57.284 61.111 0.00 0.00 0.00 4.16
3206 3540 0.685097 CCTCTTTTCGACACCCCAGA 59.315 55.000 0.00 0.00 0.00 3.86
3207 3541 1.279271 CCTCTTTTCGACACCCCAGAT 59.721 52.381 0.00 0.00 0.00 2.90
3210 3544 1.003118 CTTTTCGACACCCCAGATCCA 59.997 52.381 0.00 0.00 0.00 3.41
3220 3554 1.277580 CCCAGATCCACCTCTTGGCT 61.278 60.000 0.00 0.00 46.47 4.75
3265 3599 6.585695 CCATCATGGCTAGCTTTATTGATT 57.414 37.500 15.72 0.12 0.00 2.57
3266 3600 6.989659 CCATCATGGCTAGCTTTATTGATTT 58.010 36.000 15.72 0.00 0.00 2.17
3267 3601 7.088905 CCATCATGGCTAGCTTTATTGATTTC 58.911 38.462 15.72 0.00 0.00 2.17
3268 3602 7.255695 CCATCATGGCTAGCTTTATTGATTTCA 60.256 37.037 15.72 0.00 0.00 2.69
3269 3603 7.643569 TCATGGCTAGCTTTATTGATTTCAA 57.356 32.000 15.72 0.00 40.51 2.69
3270 3604 8.065473 TCATGGCTAGCTTTATTGATTTCAAA 57.935 30.769 15.72 0.00 39.55 2.69
3271 3605 7.975616 TCATGGCTAGCTTTATTGATTTCAAAC 59.024 33.333 15.72 0.00 39.55 2.93
3272 3606 7.225784 TGGCTAGCTTTATTGATTTCAAACA 57.774 32.000 15.72 0.00 39.55 2.83
3273 3607 7.315142 TGGCTAGCTTTATTGATTTCAAACAG 58.685 34.615 15.72 0.00 39.55 3.16
3274 3608 6.753744 GGCTAGCTTTATTGATTTCAAACAGG 59.246 38.462 15.72 0.00 39.55 4.00
3275 3609 7.362920 GGCTAGCTTTATTGATTTCAAACAGGA 60.363 37.037 15.72 0.00 39.55 3.86
3276 3610 8.028938 GCTAGCTTTATTGATTTCAAACAGGAA 58.971 33.333 7.70 0.00 39.55 3.36
3284 3618 8.915871 ATTGATTTCAAACAGGAATTACATCG 57.084 30.769 0.00 0.00 39.55 3.84
3285 3619 7.447374 TGATTTCAAACAGGAATTACATCGT 57.553 32.000 0.00 0.00 0.00 3.73
3286 3620 7.526608 TGATTTCAAACAGGAATTACATCGTC 58.473 34.615 0.00 0.00 0.00 4.20
3287 3621 7.390440 TGATTTCAAACAGGAATTACATCGTCT 59.610 33.333 0.00 0.00 0.00 4.18
3288 3622 8.786826 ATTTCAAACAGGAATTACATCGTCTA 57.213 30.769 0.00 0.00 0.00 2.59
3289 3623 7.591006 TTCAAACAGGAATTACATCGTCTAC 57.409 36.000 0.00 0.00 0.00 2.59
3290 3624 5.803461 TCAAACAGGAATTACATCGTCTACG 59.197 40.000 0.00 0.00 41.45 3.51
3303 3637 4.508461 TCGTCTACGAGTTTGGAAATCA 57.492 40.909 0.14 0.00 44.22 2.57
3304 3638 4.482386 TCGTCTACGAGTTTGGAAATCAG 58.518 43.478 0.14 0.00 44.22 2.90
3305 3639 4.216902 TCGTCTACGAGTTTGGAAATCAGA 59.783 41.667 0.14 0.00 44.22 3.27
3306 3640 4.323868 CGTCTACGAGTTTGGAAATCAGAC 59.676 45.833 0.00 0.00 43.02 3.51
3307 3641 5.227908 GTCTACGAGTTTGGAAATCAGACA 58.772 41.667 0.00 0.00 33.37 3.41
3308 3642 5.694910 GTCTACGAGTTTGGAAATCAGACAA 59.305 40.000 0.00 0.00 33.37 3.18
3309 3643 5.926542 TCTACGAGTTTGGAAATCAGACAAG 59.073 40.000 0.00 0.00 33.37 3.16
3310 3644 3.251004 ACGAGTTTGGAAATCAGACAAGC 59.749 43.478 0.00 0.00 33.37 4.01
3311 3645 3.365364 CGAGTTTGGAAATCAGACAAGCC 60.365 47.826 0.00 0.00 33.37 4.35
3312 3646 2.554032 AGTTTGGAAATCAGACAAGCCG 59.446 45.455 0.00 0.00 33.37 5.52
3313 3647 1.533625 TTGGAAATCAGACAAGCCGG 58.466 50.000 0.00 0.00 0.00 6.13
3314 3648 0.322456 TGGAAATCAGACAAGCCGGG 60.322 55.000 2.18 0.00 0.00 5.73
3315 3649 1.032114 GGAAATCAGACAAGCCGGGG 61.032 60.000 2.18 0.00 0.00 5.73
3316 3650 1.657751 GAAATCAGACAAGCCGGGGC 61.658 60.000 2.18 0.18 42.33 5.80
3326 3660 4.554036 GCCGGGGCTCATCAGTCC 62.554 72.222 2.18 0.00 44.84 3.85
3332 3666 2.653234 GGGCTCATCAGTCCATGAAT 57.347 50.000 0.00 0.00 44.95 2.57
3333 3667 2.941480 GGGCTCATCAGTCCATGAATT 58.059 47.619 0.00 0.00 44.95 2.17
3334 3668 4.090761 GGGCTCATCAGTCCATGAATTA 57.909 45.455 0.00 0.00 44.95 1.40
3335 3669 3.817647 GGGCTCATCAGTCCATGAATTAC 59.182 47.826 0.00 0.00 44.95 1.89
3336 3670 4.454678 GGCTCATCAGTCCATGAATTACA 58.545 43.478 0.00 0.00 42.53 2.41
3337 3671 4.883585 GGCTCATCAGTCCATGAATTACAA 59.116 41.667 0.00 0.00 42.53 2.41
3338 3672 5.357878 GGCTCATCAGTCCATGAATTACAAA 59.642 40.000 0.00 0.00 42.53 2.83
3339 3673 6.040166 GGCTCATCAGTCCATGAATTACAAAT 59.960 38.462 0.00 0.00 42.53 2.32
3340 3674 7.137426 GCTCATCAGTCCATGAATTACAAATC 58.863 38.462 0.00 0.00 42.53 2.17
3341 3675 7.013083 GCTCATCAGTCCATGAATTACAAATCT 59.987 37.037 0.00 0.00 42.53 2.40
3342 3676 8.812513 TCATCAGTCCATGAATTACAAATCTT 57.187 30.769 0.00 0.00 42.53 2.40
3343 3677 9.904198 TCATCAGTCCATGAATTACAAATCTTA 57.096 29.630 0.00 0.00 42.53 2.10
3344 3678 9.941664 CATCAGTCCATGAATTACAAATCTTAC 57.058 33.333 0.00 0.00 42.53 2.34
3345 3679 9.911788 ATCAGTCCATGAATTACAAATCTTACT 57.088 29.630 0.00 0.00 42.53 2.24
3369 3703 4.923264 AAAAACAGTAACTAGCTAGCGC 57.077 40.909 20.91 10.72 0.00 5.92
3370 3704 3.587797 AAACAGTAACTAGCTAGCGCA 57.412 42.857 20.91 3.04 39.10 6.09
3371 3705 3.802948 AACAGTAACTAGCTAGCGCAT 57.197 42.857 20.91 7.35 39.10 4.73
3372 3706 3.085443 ACAGTAACTAGCTAGCGCATG 57.915 47.619 20.91 15.96 39.10 4.06
3373 3707 1.789464 CAGTAACTAGCTAGCGCATGC 59.211 52.381 20.91 13.80 43.24 4.06
3384 3718 4.541482 CGCATGCGCCGCTTGATT 62.541 61.111 29.09 0.00 36.06 2.57
3385 3719 2.202650 GCATGCGCCGCTTGATTT 60.203 55.556 26.49 0.00 36.06 2.17
3386 3720 2.510594 GCATGCGCCGCTTGATTTG 61.511 57.895 26.49 8.42 36.06 2.32
3387 3721 1.137194 CATGCGCCGCTTGATTTGA 59.863 52.632 18.94 0.00 36.06 2.69
3388 3722 0.456482 CATGCGCCGCTTGATTTGAA 60.456 50.000 18.94 0.00 36.06 2.69
3389 3723 0.179156 ATGCGCCGCTTGATTTGAAG 60.179 50.000 11.67 0.00 0.00 3.02
3390 3724 1.233950 TGCGCCGCTTGATTTGAAGA 61.234 50.000 11.67 0.00 0.00 2.87
3391 3725 0.109781 GCGCCGCTTGATTTGAAGAA 60.110 50.000 0.00 0.00 0.00 2.52
3392 3726 1.606606 CGCCGCTTGATTTGAAGAAC 58.393 50.000 0.00 0.00 0.00 3.01
3393 3727 1.606606 GCCGCTTGATTTGAAGAACG 58.393 50.000 0.00 0.00 0.00 3.95
3394 3728 1.196808 GCCGCTTGATTTGAAGAACGA 59.803 47.619 0.00 0.00 0.00 3.85
3395 3729 2.726066 GCCGCTTGATTTGAAGAACGAG 60.726 50.000 0.00 0.00 0.00 4.18
3396 3730 2.499896 CGCTTGATTTGAAGAACGAGC 58.500 47.619 0.00 0.00 36.69 5.03
3397 3731 2.096268 CGCTTGATTTGAAGAACGAGCA 60.096 45.455 0.00 0.00 39.04 4.26
3398 3732 3.229552 GCTTGATTTGAAGAACGAGCAC 58.770 45.455 0.00 0.00 38.96 4.40
3399 3733 3.303990 GCTTGATTTGAAGAACGAGCACA 60.304 43.478 0.00 0.00 38.96 4.57
3400 3734 4.789481 GCTTGATTTGAAGAACGAGCACAA 60.789 41.667 0.00 0.00 38.96 3.33
3401 3735 5.437289 TTGATTTGAAGAACGAGCACAAT 57.563 34.783 0.00 0.00 0.00 2.71
3402 3736 4.786507 TGATTTGAAGAACGAGCACAATG 58.213 39.130 0.00 0.00 0.00 2.82
3403 3737 4.275689 TGATTTGAAGAACGAGCACAATGT 59.724 37.500 0.00 0.00 0.00 2.71
3404 3738 4.630894 TTTGAAGAACGAGCACAATGTT 57.369 36.364 0.00 0.00 0.00 2.71
3405 3739 4.630894 TTGAAGAACGAGCACAATGTTT 57.369 36.364 0.00 0.00 0.00 2.83
3406 3740 5.743026 TTGAAGAACGAGCACAATGTTTA 57.257 34.783 0.00 0.00 0.00 2.01
3407 3741 5.743026 TGAAGAACGAGCACAATGTTTAA 57.257 34.783 0.00 0.00 0.00 1.52
3408 3742 6.125327 TGAAGAACGAGCACAATGTTTAAA 57.875 33.333 0.00 0.00 0.00 1.52
3409 3743 6.198687 TGAAGAACGAGCACAATGTTTAAAG 58.801 36.000 0.00 0.00 0.00 1.85
3410 3744 6.037720 TGAAGAACGAGCACAATGTTTAAAGA 59.962 34.615 0.00 0.00 0.00 2.52
3411 3745 6.560253 AGAACGAGCACAATGTTTAAAGAT 57.440 33.333 0.00 0.00 0.00 2.40
3412 3746 7.667043 AGAACGAGCACAATGTTTAAAGATA 57.333 32.000 0.00 0.00 0.00 1.98
3413 3747 8.094798 AGAACGAGCACAATGTTTAAAGATAA 57.905 30.769 0.00 0.00 0.00 1.75
3414 3748 8.015658 AGAACGAGCACAATGTTTAAAGATAAC 58.984 33.333 0.00 0.00 0.00 1.89
3415 3749 6.608610 ACGAGCACAATGTTTAAAGATAACC 58.391 36.000 0.00 0.00 0.00 2.85
3416 3750 6.430000 ACGAGCACAATGTTTAAAGATAACCT 59.570 34.615 0.00 0.00 0.00 3.50
3417 3751 7.040686 ACGAGCACAATGTTTAAAGATAACCTT 60.041 33.333 0.00 0.00 36.47 3.50
3418 3752 7.481798 CGAGCACAATGTTTAAAGATAACCTTC 59.518 37.037 0.00 0.00 33.02 3.46
3419 3753 7.602753 AGCACAATGTTTAAAGATAACCTTCC 58.397 34.615 0.00 0.00 33.02 3.46
3420 3754 6.811665 GCACAATGTTTAAAGATAACCTTCCC 59.188 38.462 0.00 0.00 33.02 3.97
3421 3755 7.524698 GCACAATGTTTAAAGATAACCTTCCCA 60.525 37.037 0.00 0.00 33.02 4.37
3422 3756 8.364142 CACAATGTTTAAAGATAACCTTCCCAA 58.636 33.333 0.00 0.00 33.02 4.12
3423 3757 9.100197 ACAATGTTTAAAGATAACCTTCCCAAT 57.900 29.630 0.00 0.00 33.02 3.16
3424 3758 9.942850 CAATGTTTAAAGATAACCTTCCCAATT 57.057 29.630 0.00 0.00 33.02 2.32
3425 3759 9.942850 AATGTTTAAAGATAACCTTCCCAATTG 57.057 29.630 0.00 0.00 33.02 2.32
3426 3760 7.902087 TGTTTAAAGATAACCTTCCCAATTGG 58.098 34.615 18.21 18.21 33.02 3.16
3427 3761 6.538945 TTAAAGATAACCTTCCCAATTGGC 57.461 37.500 19.75 1.84 33.02 4.52
3428 3762 4.337264 AAGATAACCTTCCCAATTGGCT 57.663 40.909 19.75 4.32 0.00 4.75
3429 3763 3.635591 AGATAACCTTCCCAATTGGCTG 58.364 45.455 19.75 6.68 0.00 4.85
3430 3764 2.990740 TAACCTTCCCAATTGGCTGT 57.009 45.000 19.75 9.48 0.00 4.40
3431 3765 1.632589 AACCTTCCCAATTGGCTGTC 58.367 50.000 19.75 0.00 0.00 3.51
3432 3766 0.779997 ACCTTCCCAATTGGCTGTCT 59.220 50.000 19.75 0.00 0.00 3.41
3433 3767 1.992557 ACCTTCCCAATTGGCTGTCTA 59.007 47.619 19.75 0.00 0.00 2.59
3434 3768 2.582636 ACCTTCCCAATTGGCTGTCTAT 59.417 45.455 19.75 0.00 0.00 1.98
3435 3769 3.011708 ACCTTCCCAATTGGCTGTCTATT 59.988 43.478 19.75 0.00 0.00 1.73
3436 3770 4.026052 CCTTCCCAATTGGCTGTCTATTT 58.974 43.478 19.75 0.00 0.00 1.40
3437 3771 4.467438 CCTTCCCAATTGGCTGTCTATTTT 59.533 41.667 19.75 0.00 0.00 1.82
3438 3772 5.046376 CCTTCCCAATTGGCTGTCTATTTTT 60.046 40.000 19.75 0.00 0.00 1.94
3495 3829 9.762062 CTTTACGCATTTTTACCTTTTGTTTTT 57.238 25.926 0.00 0.00 0.00 1.94
3510 3844 8.690840 CCTTTTGTTTTTAGAATCTTTACGCAG 58.309 33.333 0.00 0.00 0.00 5.18
3569 3903 0.311790 TAACGAACGAACACTCCGCT 59.688 50.000 0.14 0.00 0.00 5.52
3570 3904 0.311790 AACGAACGAACACTCCGCTA 59.688 50.000 0.14 0.00 0.00 4.26
3571 3905 0.386478 ACGAACGAACACTCCGCTAC 60.386 55.000 0.14 0.00 0.00 3.58
3642 3976 1.001158 CCCGATCTTCTTCTCCGTAGC 60.001 57.143 0.00 0.00 0.00 3.58
3646 3980 0.963856 TCTTCTTCTCCGTAGCCGCA 60.964 55.000 0.00 0.00 0.00 5.69
3649 3983 3.356639 CTTCTCCGTAGCCGCAGCA 62.357 63.158 0.00 0.00 43.56 4.41
3650 3984 3.356639 TTCTCCGTAGCCGCAGCAG 62.357 63.158 0.00 0.00 43.56 4.24
3685 4019 3.626924 CCCGATCCGATCCCCACC 61.627 72.222 2.69 0.00 0.00 4.61
3718 4052 0.681733 TCACTGCTTGAGGTGAGTCC 59.318 55.000 0.00 0.00 37.52 3.85
3750 4084 4.851214 GCGCCTCCTCCTCTCCCT 62.851 72.222 0.00 0.00 0.00 4.20
3751 4085 2.042435 CGCCTCCTCCTCTCCCTT 60.042 66.667 0.00 0.00 0.00 3.95
3752 4086 2.131067 CGCCTCCTCCTCTCCCTTC 61.131 68.421 0.00 0.00 0.00 3.46
3762 4096 0.467290 CTCTCCCTTCTCTCCCTCCG 60.467 65.000 0.00 0.00 0.00 4.63
3772 4106 4.880426 TCCCTCCGGATCCCAGGC 62.880 72.222 16.38 0.00 31.13 4.85
3775 4109 4.247380 CTCCGGATCCCAGGCTGC 62.247 72.222 3.57 0.00 0.00 5.25
3782 4116 1.757423 GATCCCAGGCTGCTCTCCTC 61.757 65.000 9.56 0.00 0.00 3.71
3783 4117 3.478274 CCCAGGCTGCTCTCCTCC 61.478 72.222 9.56 0.00 0.00 4.30
3785 4119 1.994507 CCAGGCTGCTCTCCTCCTT 60.995 63.158 9.56 0.00 0.00 3.36
3786 4120 1.221293 CAGGCTGCTCTCCTCCTTG 59.779 63.158 0.00 0.00 0.00 3.61
3787 4121 1.079987 AGGCTGCTCTCCTCCTTGA 59.920 57.895 0.00 0.00 0.00 3.02
3788 4122 0.977108 AGGCTGCTCTCCTCCTTGAG 60.977 60.000 0.00 0.00 0.00 3.02
3819 4156 4.140591 TCCAGTCCTAGATCTCCATTCCAT 60.141 45.833 0.00 0.00 0.00 3.41
3825 4162 1.764723 AGATCTCCATTCCATGCGTCA 59.235 47.619 0.00 0.00 0.00 4.35
3826 4163 2.371179 AGATCTCCATTCCATGCGTCAT 59.629 45.455 0.00 0.00 0.00 3.06
3828 4165 0.309922 CTCCATTCCATGCGTCATGC 59.690 55.000 12.53 0.00 40.20 4.06
3845 4182 2.215604 GCGCGTGCGTAGTGACTAG 61.216 63.158 16.27 0.00 42.09 2.57
3858 4195 7.752239 TGCGTAGTGACTAGTTTTAGAATGTAC 59.248 37.037 0.00 0.00 0.00 2.90
3859 4196 7.045096 GCGTAGTGACTAGTTTTAGAATGTACG 60.045 40.741 0.00 2.89 34.34 3.67
3873 4210 9.563898 TTTAGAATGTACGTACTGTAGTTGATG 57.436 33.333 25.12 0.00 32.51 3.07
3887 4224 7.118390 ACTGTAGTTGATGTTTCTACTTGATGC 59.882 37.037 0.00 0.00 38.59 3.91
3888 4225 5.536554 AGTTGATGTTTCTACTTGATGCG 57.463 39.130 0.00 0.00 34.84 4.73
3898 4235 0.322816 ACTTGATGCGGTGCCTTCAT 60.323 50.000 0.00 0.00 0.00 2.57
3915 4252 9.113838 GTGCCTTCATAATTCTAGATTTTCAGA 57.886 33.333 5.26 0.21 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 46 1.153469 GCAGCAGCTCCAGTAGGTC 60.153 63.158 0.00 0.00 37.91 3.85
44 47 2.985456 GCAGCAGCTCCAGTAGGT 59.015 61.111 0.00 0.00 37.91 3.08
59 62 2.438975 GCCCATACAGCTGCAGCA 60.439 61.111 38.24 20.45 45.16 4.41
124 131 2.677003 CCGACCAACCGATGCACAC 61.677 63.158 0.00 0.00 0.00 3.82
129 136 2.303163 TTGATACCGACCAACCGATG 57.697 50.000 0.00 0.00 0.00 3.84
130 137 3.004862 GTTTTGATACCGACCAACCGAT 58.995 45.455 0.00 0.00 0.00 4.18
133 140 2.227149 GTGGTTTTGATACCGACCAACC 59.773 50.000 0.00 0.00 43.25 3.77
187 194 1.727511 CGGTGGTGCATTGCCTATGG 61.728 60.000 6.12 0.00 34.66 2.74
188 195 0.747644 TCGGTGGTGCATTGCCTATG 60.748 55.000 6.12 0.00 37.31 2.23
189 196 0.034574 TTCGGTGGTGCATTGCCTAT 60.035 50.000 6.12 0.00 0.00 2.57
193 200 1.806758 GCATTCGGTGGTGCATTGC 60.807 57.895 0.46 0.46 40.94 3.56
205 212 5.835911 ATTCTAAGATCATCGTGCATTCG 57.164 39.130 0.00 0.00 0.00 3.34
226 233 6.501805 TCCTAGGCCAAGTCATATGTTCATAT 59.498 38.462 5.01 0.09 0.00 1.78
247 254 2.967397 CAGGCGTCCGTTGTCCTA 59.033 61.111 0.00 0.00 0.00 2.94
255 262 1.298157 TGATTTGAAGCAGGCGTCCG 61.298 55.000 4.81 0.00 0.00 4.79
266 273 4.943705 GTCTGAGTTGGCCTATGATTTGAA 59.056 41.667 3.32 0.00 0.00 2.69
267 274 4.019411 TGTCTGAGTTGGCCTATGATTTGA 60.019 41.667 3.32 0.00 0.00 2.69
284 291 1.748329 AACAGGTGCGCTCTGTCTGA 61.748 55.000 27.66 0.00 43.82 3.27
292 299 2.281761 CCAAGGAACAGGTGCGCT 60.282 61.111 9.73 0.00 0.00 5.92
294 301 4.473643 TTCCAAGGAACAGGTGCG 57.526 55.556 0.00 0.00 0.00 5.34
308 315 1.260544 AATTGCAAGCTGGAGGTTCC 58.739 50.000 4.94 0.00 36.96 3.62
310 317 1.821136 GCTAATTGCAAGCTGGAGGTT 59.179 47.619 4.94 0.00 42.31 3.50
311 318 1.467920 GCTAATTGCAAGCTGGAGGT 58.532 50.000 4.94 0.00 42.31 3.85
337 424 1.589727 GTGGCGCATTGCTTATGGC 60.590 57.895 10.83 4.07 45.43 4.40
344 431 0.458197 TGCATTTAGTGGCGCATTGC 60.458 50.000 10.83 7.17 45.38 3.56
348 435 1.135431 GTCATTGCATTTAGTGGCGCA 60.135 47.619 10.83 0.00 0.00 6.09
381 468 3.064134 CACGGTATTGTTCACACACACAA 59.936 43.478 0.00 0.00 37.31 3.33
384 471 2.867368 GTCACGGTATTGTTCACACACA 59.133 45.455 0.00 0.00 30.32 3.72
388 475 3.135225 CCAAGTCACGGTATTGTTCACA 58.865 45.455 0.00 0.00 0.00 3.58
389 476 2.095919 GCCAAGTCACGGTATTGTTCAC 60.096 50.000 0.00 0.00 0.00 3.18
390 477 2.147958 GCCAAGTCACGGTATTGTTCA 58.852 47.619 0.00 0.00 0.00 3.18
391 478 1.467342 GGCCAAGTCACGGTATTGTTC 59.533 52.381 0.00 0.00 0.00 3.18
392 479 1.073284 AGGCCAAGTCACGGTATTGTT 59.927 47.619 5.01 0.00 0.00 2.83
393 480 0.690762 AGGCCAAGTCACGGTATTGT 59.309 50.000 5.01 0.00 0.00 2.71
394 481 2.167693 TCTAGGCCAAGTCACGGTATTG 59.832 50.000 5.01 0.00 0.00 1.90
395 482 2.167900 GTCTAGGCCAAGTCACGGTATT 59.832 50.000 5.01 0.00 0.00 1.89
396 483 1.755380 GTCTAGGCCAAGTCACGGTAT 59.245 52.381 5.01 0.00 0.00 2.73
397 484 1.180029 GTCTAGGCCAAGTCACGGTA 58.820 55.000 5.01 0.00 0.00 4.02
398 485 0.542232 AGTCTAGGCCAAGTCACGGT 60.542 55.000 5.01 0.00 0.00 4.83
400 487 1.202313 GCTAGTCTAGGCCAAGTCACG 60.202 57.143 5.01 0.00 0.00 4.35
401 488 1.825474 TGCTAGTCTAGGCCAAGTCAC 59.175 52.381 5.01 0.00 0.00 3.67
403 490 2.761208 TCTTGCTAGTCTAGGCCAAGTC 59.239 50.000 18.92 0.00 0.00 3.01
404 491 2.821437 TCTTGCTAGTCTAGGCCAAGT 58.179 47.619 18.92 0.00 0.00 3.16
405 492 3.055819 TGTTCTTGCTAGTCTAGGCCAAG 60.056 47.826 5.01 15.79 0.00 3.61
406 493 2.903784 TGTTCTTGCTAGTCTAGGCCAA 59.096 45.455 5.01 4.72 0.00 4.52
407 494 2.536066 TGTTCTTGCTAGTCTAGGCCA 58.464 47.619 5.01 0.00 0.00 5.36
408 495 3.195825 TCTTGTTCTTGCTAGTCTAGGCC 59.804 47.826 8.97 0.00 0.00 5.19
409 496 4.457834 TCTTGTTCTTGCTAGTCTAGGC 57.542 45.455 8.97 2.26 0.00 3.93
441 541 9.736023 GTTCTTCTTCTTGCTTTATCTTTTTGA 57.264 29.630 0.00 0.00 0.00 2.69
442 542 8.685536 CGTTCTTCTTCTTGCTTTATCTTTTTG 58.314 33.333 0.00 0.00 0.00 2.44
443 543 7.379797 GCGTTCTTCTTCTTGCTTTATCTTTTT 59.620 33.333 0.00 0.00 0.00 1.94
444 544 6.858478 GCGTTCTTCTTCTTGCTTTATCTTTT 59.142 34.615 0.00 0.00 0.00 2.27
445 545 6.374578 GCGTTCTTCTTCTTGCTTTATCTTT 58.625 36.000 0.00 0.00 0.00 2.52
446 546 5.106515 GGCGTTCTTCTTCTTGCTTTATCTT 60.107 40.000 0.00 0.00 0.00 2.40
447 547 4.393371 GGCGTTCTTCTTCTTGCTTTATCT 59.607 41.667 0.00 0.00 0.00 1.98
448 548 4.437524 GGGCGTTCTTCTTCTTGCTTTATC 60.438 45.833 0.00 0.00 0.00 1.75
449 549 3.440522 GGGCGTTCTTCTTCTTGCTTTAT 59.559 43.478 0.00 0.00 0.00 1.40
450 550 2.812011 GGGCGTTCTTCTTCTTGCTTTA 59.188 45.455 0.00 0.00 0.00 1.85
461 561 1.294659 CTGACAGCAGGGCGTTCTTC 61.295 60.000 0.00 0.00 38.51 2.87
491 591 6.874288 ATTATTAAATCTGACTGCCAGCTC 57.126 37.500 0.00 0.00 42.62 4.09
510 618 6.764560 CCCGTACCTTTACTTGTTGCTATTAT 59.235 38.462 0.00 0.00 0.00 1.28
512 620 4.939439 CCCGTACCTTTACTTGTTGCTATT 59.061 41.667 0.00 0.00 0.00 1.73
515 623 2.774687 CCCGTACCTTTACTTGTTGCT 58.225 47.619 0.00 0.00 0.00 3.91
516 624 1.198408 GCCCGTACCTTTACTTGTTGC 59.802 52.381 0.00 0.00 0.00 4.17
517 625 1.808343 GGCCCGTACCTTTACTTGTTG 59.192 52.381 0.00 0.00 0.00 3.33
519 627 0.325933 GGGCCCGTACCTTTACTTGT 59.674 55.000 5.69 0.00 0.00 3.16
530 643 1.409427 CTTTTGTTTGTTGGGCCCGTA 59.591 47.619 19.37 4.44 0.00 4.02
553 666 6.183360 GGCTGTTGTTTGTTGTTTGATTGATT 60.183 34.615 0.00 0.00 0.00 2.57
567 680 4.217118 AGAAAGATGCTAGGCTGTTGTTTG 59.783 41.667 0.00 0.00 0.00 2.93
569 682 4.006319 GAGAAAGATGCTAGGCTGTTGTT 58.994 43.478 0.00 0.00 0.00 2.83
863 1040 1.686110 GGAGCGGGGAGGAAGAAGA 60.686 63.158 0.00 0.00 0.00 2.87
907 1088 2.740055 CTGTGCGGTGTCAGAGGC 60.740 66.667 0.00 0.00 34.02 4.70
923 1119 1.065126 CAAAGAAGGCCGGAGATTCCT 60.065 52.381 5.05 0.00 33.30 3.36
933 1135 0.387750 CGAGCAAAGCAAAGAAGGCC 60.388 55.000 0.00 0.00 0.00 5.19
939 1141 0.723790 CAGACGCGAGCAAAGCAAAG 60.724 55.000 15.93 0.00 34.19 2.77
941 1143 1.831389 GACAGACGCGAGCAAAGCAA 61.831 55.000 15.93 0.00 34.19 3.91
942 1144 2.280119 ACAGACGCGAGCAAAGCA 60.280 55.556 15.93 0.00 34.19 3.91
943 1145 2.472049 GACAGACGCGAGCAAAGC 59.528 61.111 15.93 0.00 0.00 3.51
944 1146 1.935065 GACGACAGACGCGAGCAAAG 61.935 60.000 15.93 2.08 46.94 2.77
947 1149 4.736631 CGACGACAGACGCGAGCA 62.737 66.667 15.93 0.00 46.94 4.26
948 1150 4.738345 ACGACGACAGACGCGAGC 62.738 66.667 15.93 3.96 46.94 5.03
949 1151 2.127345 AACGACGACAGACGCGAG 60.127 61.111 15.93 4.52 46.94 5.03
951 1153 2.724721 ACAACGACGACAGACGCG 60.725 61.111 3.53 3.53 46.94 6.01
952 1154 1.597700 CTCACAACGACGACAGACGC 61.598 60.000 0.00 0.00 46.94 5.19
954 1156 0.030369 ACCTCACAACGACGACAGAC 59.970 55.000 0.00 0.00 0.00 3.51
955 1157 0.742505 AACCTCACAACGACGACAGA 59.257 50.000 0.00 0.00 0.00 3.41
956 1158 1.521423 GAAACCTCACAACGACGACAG 59.479 52.381 0.00 0.00 0.00 3.51
960 1162 1.931172 ACAAGAAACCTCACAACGACG 59.069 47.619 0.00 0.00 0.00 5.12
961 1163 3.372822 TCAACAAGAAACCTCACAACGAC 59.627 43.478 0.00 0.00 0.00 4.34
963 1165 3.374058 ACTCAACAAGAAACCTCACAACG 59.626 43.478 0.00 0.00 0.00 4.10
964 1166 4.394920 TCACTCAACAAGAAACCTCACAAC 59.605 41.667 0.00 0.00 0.00 3.32
965 1167 4.394920 GTCACTCAACAAGAAACCTCACAA 59.605 41.667 0.00 0.00 0.00 3.33
966 1168 3.938963 GTCACTCAACAAGAAACCTCACA 59.061 43.478 0.00 0.00 0.00 3.58
967 1169 4.034510 CAGTCACTCAACAAGAAACCTCAC 59.965 45.833 0.00 0.00 0.00 3.51
968 1170 4.081142 TCAGTCACTCAACAAGAAACCTCA 60.081 41.667 0.00 0.00 0.00 3.86
969 1171 4.271291 GTCAGTCACTCAACAAGAAACCTC 59.729 45.833 0.00 0.00 0.00 3.85
970 1172 4.192317 GTCAGTCACTCAACAAGAAACCT 58.808 43.478 0.00 0.00 0.00 3.50
971 1173 3.312697 GGTCAGTCACTCAACAAGAAACC 59.687 47.826 0.00 0.00 0.00 3.27
972 1174 3.001330 CGGTCAGTCACTCAACAAGAAAC 59.999 47.826 0.00 0.00 0.00 2.78
973 1175 3.194861 CGGTCAGTCACTCAACAAGAAA 58.805 45.455 0.00 0.00 0.00 2.52
975 1177 1.068588 CCGGTCAGTCACTCAACAAGA 59.931 52.381 0.00 0.00 0.00 3.02
976 1178 1.502231 CCGGTCAGTCACTCAACAAG 58.498 55.000 0.00 0.00 0.00 3.16
978 1180 1.069090 GCCGGTCAGTCACTCAACA 59.931 57.895 1.90 0.00 0.00 3.33
979 1181 2.022129 CGCCGGTCAGTCACTCAAC 61.022 63.158 1.90 0.00 0.00 3.18
981 1183 3.680786 CCGCCGGTCAGTCACTCA 61.681 66.667 1.90 0.00 0.00 3.41
985 1187 4.758251 CATGCCGCCGGTCAGTCA 62.758 66.667 4.45 0.00 0.00 3.41
1060 1262 2.743718 CACCTCCACCTTCGCACT 59.256 61.111 0.00 0.00 0.00 4.40
1062 1264 2.525629 TCCACCTCCACCTTCGCA 60.526 61.111 0.00 0.00 0.00 5.10
1188 1390 4.821589 GCCTCCTCGACCTTGGCG 62.822 72.222 0.00 0.00 33.96 5.69
1191 1393 1.144936 GATGGCCTCCTCGACCTTG 59.855 63.158 3.32 0.00 0.00 3.61
1241 1443 2.328099 GCCTTGACCTTGACGCTGG 61.328 63.158 0.00 0.00 0.00 4.85
1242 1444 2.671177 CGCCTTGACCTTGACGCTG 61.671 63.158 0.00 0.00 0.00 5.18
1246 1448 0.250338 ACCTTCGCCTTGACCTTGAC 60.250 55.000 0.00 0.00 0.00 3.18
1247 1449 0.250295 CACCTTCGCCTTGACCTTGA 60.250 55.000 0.00 0.00 0.00 3.02
1254 1456 2.747855 GGCTCCACCTTCGCCTTG 60.748 66.667 0.00 0.00 40.62 3.61
1259 1461 0.674895 CTTCTTGGGCTCCACCTTCG 60.675 60.000 0.00 0.00 39.10 3.79
1270 1472 3.182152 TCTTACCCTCCTTCTTCTTGGG 58.818 50.000 0.00 0.00 43.26 4.12
1401 1630 2.499693 CTCCTCTTTCTTCTCCTCACCC 59.500 54.545 0.00 0.00 0.00 4.61
1450 1679 4.214327 CTTCTCCTCGGCCGGCTC 62.214 72.222 28.56 15.77 0.00 4.70
1460 1689 1.688884 GCCTCCTCCTGCTTCTCCT 60.689 63.158 0.00 0.00 0.00 3.69
1515 1744 3.077556 TCCTGCTTCTCCTCGGCC 61.078 66.667 0.00 0.00 0.00 6.13
1517 1746 1.380515 TCCTCCTGCTTCTCCTCGG 60.381 63.158 0.00 0.00 0.00 4.63
1519 1748 1.685355 GCCTCCTCCTGCTTCTCCTC 61.685 65.000 0.00 0.00 0.00 3.71
1528 1757 3.382803 CTTCAGCCGCCTCCTCCTG 62.383 68.421 0.00 0.00 0.00 3.86
1530 1759 2.185310 TTTCTTCAGCCGCCTCCTCC 62.185 60.000 0.00 0.00 0.00 4.30
1531 1760 0.321653 TTTTCTTCAGCCGCCTCCTC 60.322 55.000 0.00 0.00 0.00 3.71
1532 1761 0.322008 CTTTTCTTCAGCCGCCTCCT 60.322 55.000 0.00 0.00 0.00 3.69
1533 1762 0.321653 TCTTTTCTTCAGCCGCCTCC 60.322 55.000 0.00 0.00 0.00 4.30
1534 1763 1.523758 TTCTTTTCTTCAGCCGCCTC 58.476 50.000 0.00 0.00 0.00 4.70
1535 1764 1.882623 CTTTCTTTTCTTCAGCCGCCT 59.117 47.619 0.00 0.00 0.00 5.52
1536 1765 1.880027 TCTTTCTTTTCTTCAGCCGCC 59.120 47.619 0.00 0.00 0.00 6.13
1537 1766 2.666895 GCTCTTTCTTTTCTTCAGCCGC 60.667 50.000 0.00 0.00 0.00 6.53
1538 1767 2.095516 GGCTCTTTCTTTTCTTCAGCCG 60.096 50.000 0.00 0.00 35.91 5.52
2218 2466 1.591158 CGAAGCAATTTCATGGCATGC 59.409 47.619 22.56 9.90 35.43 4.06
2378 2626 3.456317 AGCGTCTCGGTGACCTTT 58.544 55.556 0.00 0.00 42.49 3.11
2514 2762 3.226884 CGATGGTTTCGGTGGAGTT 57.773 52.632 0.00 0.00 44.28 3.01
2548 2796 8.250143 AGTTTCTTTTCCATTTGTAATCACCT 57.750 30.769 0.00 0.00 0.00 4.00
2549 2797 8.764287 CAAGTTTCTTTTCCATTTGTAATCACC 58.236 33.333 0.00 0.00 0.00 4.02
2550 2798 9.313118 ACAAGTTTCTTTTCCATTTGTAATCAC 57.687 29.630 0.00 0.00 0.00 3.06
2551 2799 9.311916 CACAAGTTTCTTTTCCATTTGTAATCA 57.688 29.630 0.00 0.00 0.00 2.57
2552 2800 9.528018 TCACAAGTTTCTTTTCCATTTGTAATC 57.472 29.630 0.00 0.00 0.00 1.75
2554 2802 9.883142 AATCACAAGTTTCTTTTCCATTTGTAA 57.117 25.926 0.00 0.00 0.00 2.41
2555 2803 9.883142 AAATCACAAGTTTCTTTTCCATTTGTA 57.117 25.926 0.00 0.00 0.00 2.41
2556 2804 8.791327 AAATCACAAGTTTCTTTTCCATTTGT 57.209 26.923 0.00 0.00 0.00 2.83
2557 2805 9.493206 CAAAATCACAAGTTTCTTTTCCATTTG 57.507 29.630 0.00 0.00 0.00 2.32
2558 2806 8.183536 GCAAAATCACAAGTTTCTTTTCCATTT 58.816 29.630 0.00 0.00 0.00 2.32
2559 2807 7.553760 AGCAAAATCACAAGTTTCTTTTCCATT 59.446 29.630 0.00 0.00 0.00 3.16
2560 2808 7.049754 AGCAAAATCACAAGTTTCTTTTCCAT 58.950 30.769 0.00 0.00 0.00 3.41
2561 2809 6.405538 AGCAAAATCACAAGTTTCTTTTCCA 58.594 32.000 0.00 0.00 0.00 3.53
2562 2810 6.908870 AGCAAAATCACAAGTTTCTTTTCC 57.091 33.333 0.00 0.00 0.00 3.13
2563 2811 8.321005 GTGTAGCAAAATCACAAGTTTCTTTTC 58.679 33.333 0.00 0.00 33.04 2.29
2564 2812 7.277760 GGTGTAGCAAAATCACAAGTTTCTTTT 59.722 33.333 0.00 0.00 34.27 2.27
2565 2813 6.756542 GGTGTAGCAAAATCACAAGTTTCTTT 59.243 34.615 0.00 0.00 34.27 2.52
2566 2814 6.127479 TGGTGTAGCAAAATCACAAGTTTCTT 60.127 34.615 0.00 0.00 34.27 2.52
2567 2815 5.359576 TGGTGTAGCAAAATCACAAGTTTCT 59.640 36.000 0.00 0.00 34.27 2.52
2568 2816 5.458779 GTGGTGTAGCAAAATCACAAGTTTC 59.541 40.000 0.00 0.00 34.27 2.78
2569 2817 5.348164 GTGGTGTAGCAAAATCACAAGTTT 58.652 37.500 0.00 0.00 34.27 2.66
2570 2818 4.497340 CGTGGTGTAGCAAAATCACAAGTT 60.497 41.667 0.00 0.00 34.27 2.66
2571 2819 3.003275 CGTGGTGTAGCAAAATCACAAGT 59.997 43.478 0.00 0.00 34.27 3.16
2572 2820 3.554524 CGTGGTGTAGCAAAATCACAAG 58.445 45.455 0.00 0.00 34.27 3.16
2573 2821 2.287308 GCGTGGTGTAGCAAAATCACAA 60.287 45.455 0.00 0.00 34.27 3.33
2574 2822 1.265635 GCGTGGTGTAGCAAAATCACA 59.734 47.619 0.00 0.00 34.27 3.58
2575 2823 1.535462 AGCGTGGTGTAGCAAAATCAC 59.465 47.619 0.00 0.00 35.48 3.06
2576 2824 1.535028 CAGCGTGGTGTAGCAAAATCA 59.465 47.619 0.00 0.00 35.48 2.57
2577 2825 1.804151 TCAGCGTGGTGTAGCAAAATC 59.196 47.619 0.00 0.00 35.48 2.17
2578 2826 1.890876 TCAGCGTGGTGTAGCAAAAT 58.109 45.000 0.00 0.00 35.48 1.82
2579 2827 1.669604 TTCAGCGTGGTGTAGCAAAA 58.330 45.000 0.00 0.00 35.48 2.44
2580 2828 1.890876 ATTCAGCGTGGTGTAGCAAA 58.109 45.000 0.00 0.00 35.48 3.68
2581 2829 1.890876 AATTCAGCGTGGTGTAGCAA 58.109 45.000 0.00 0.00 35.48 3.91
2582 2830 1.535028 CAAATTCAGCGTGGTGTAGCA 59.465 47.619 0.00 0.00 35.48 3.49
2583 2831 1.535462 ACAAATTCAGCGTGGTGTAGC 59.465 47.619 0.00 0.00 0.00 3.58
2584 2832 3.249799 TGAACAAATTCAGCGTGGTGTAG 59.750 43.478 0.00 0.00 40.01 2.74
2585 2833 3.206964 TGAACAAATTCAGCGTGGTGTA 58.793 40.909 0.00 0.00 40.01 2.90
2586 2834 2.020720 TGAACAAATTCAGCGTGGTGT 58.979 42.857 0.00 0.00 40.01 4.16
2587 2835 2.772568 TGAACAAATTCAGCGTGGTG 57.227 45.000 0.00 0.00 40.01 4.17
2595 2843 5.180680 CAGTCATCAGCTCTGAACAAATTCA 59.819 40.000 3.47 0.00 43.58 2.57
2596 2844 5.410746 TCAGTCATCAGCTCTGAACAAATTC 59.589 40.000 3.47 0.00 43.58 2.17
2597 2845 5.180868 GTCAGTCATCAGCTCTGAACAAATT 59.819 40.000 3.47 0.00 43.58 1.82
2598 2846 4.694509 GTCAGTCATCAGCTCTGAACAAAT 59.305 41.667 3.47 0.00 43.58 2.32
2599 2847 4.060900 GTCAGTCATCAGCTCTGAACAAA 58.939 43.478 3.47 0.00 43.58 2.83
2600 2848 3.555795 GGTCAGTCATCAGCTCTGAACAA 60.556 47.826 11.47 0.00 43.05 2.83
2601 2849 2.028658 GGTCAGTCATCAGCTCTGAACA 60.029 50.000 11.47 0.00 43.05 3.18
2602 2850 2.615869 GGTCAGTCATCAGCTCTGAAC 58.384 52.381 3.47 2.90 43.58 3.18
2603 2851 1.203287 CGGTCAGTCATCAGCTCTGAA 59.797 52.381 3.47 0.00 43.58 3.02
2604 2852 0.813821 CGGTCAGTCATCAGCTCTGA 59.186 55.000 1.67 1.67 44.59 3.27
2605 2853 0.813821 TCGGTCAGTCATCAGCTCTG 59.186 55.000 0.00 0.00 0.00 3.35
2606 2854 0.814457 GTCGGTCAGTCATCAGCTCT 59.186 55.000 0.00 0.00 0.00 4.09
2607 2855 0.814457 AGTCGGTCAGTCATCAGCTC 59.186 55.000 0.00 0.00 0.00 4.09
2608 2856 0.529833 CAGTCGGTCAGTCATCAGCT 59.470 55.000 0.00 0.00 0.00 4.24
2609 2857 0.528017 TCAGTCGGTCAGTCATCAGC 59.472 55.000 0.00 0.00 0.00 4.26
2610 2858 3.516981 ATTCAGTCGGTCAGTCATCAG 57.483 47.619 0.00 0.00 0.00 2.90
2611 2859 3.961480 AATTCAGTCGGTCAGTCATCA 57.039 42.857 0.00 0.00 0.00 3.07
2612 2860 3.997021 ACAAATTCAGTCGGTCAGTCATC 59.003 43.478 0.00 0.00 0.00 2.92
2613 2861 3.997021 GACAAATTCAGTCGGTCAGTCAT 59.003 43.478 0.00 0.00 0.00 3.06
2614 2862 3.069586 AGACAAATTCAGTCGGTCAGTCA 59.930 43.478 5.62 0.00 40.84 3.41
2615 2863 3.430218 CAGACAAATTCAGTCGGTCAGTC 59.570 47.826 5.62 0.00 40.84 3.51
2616 2864 3.181465 ACAGACAAATTCAGTCGGTCAGT 60.181 43.478 9.77 0.00 39.63 3.41
2617 2865 3.185188 CACAGACAAATTCAGTCGGTCAG 59.815 47.826 11.80 2.32 41.36 3.51
2618 2866 3.130633 CACAGACAAATTCAGTCGGTCA 58.869 45.455 11.80 0.00 41.36 4.02
2619 2867 3.184581 GTCACAGACAAATTCAGTCGGTC 59.815 47.826 11.80 0.00 41.36 4.79
2620 2868 3.131396 GTCACAGACAAATTCAGTCGGT 58.869 45.455 9.77 9.77 43.48 4.69
2621 2869 3.130633 TGTCACAGACAAATTCAGTCGG 58.869 45.455 8.77 8.77 39.78 4.79
2622 2870 4.997905 ATGTCACAGACAAATTCAGTCG 57.002 40.909 3.74 4.31 45.96 4.18
2623 2871 6.304356 TGAATGTCACAGACAAATTCAGTC 57.696 37.500 10.49 3.47 45.96 3.51
2624 2872 6.072286 GGATGAATGTCACAGACAAATTCAGT 60.072 38.462 16.51 8.80 45.96 3.41
2625 2873 6.072342 TGGATGAATGTCACAGACAAATTCAG 60.072 38.462 16.51 0.00 45.96 3.02
2626 2874 5.769162 TGGATGAATGTCACAGACAAATTCA 59.231 36.000 14.75 14.75 45.96 2.57
2627 2875 6.258230 TGGATGAATGTCACAGACAAATTC 57.742 37.500 3.74 5.43 45.96 2.17
2628 2876 5.184479 CCTGGATGAATGTCACAGACAAATT 59.816 40.000 3.74 0.00 45.96 1.82
2629 2877 4.703575 CCTGGATGAATGTCACAGACAAAT 59.296 41.667 3.74 0.00 45.96 2.32
2630 2878 4.074259 CCTGGATGAATGTCACAGACAAA 58.926 43.478 3.74 0.00 45.96 2.83
2631 2879 3.559811 CCCTGGATGAATGTCACAGACAA 60.560 47.826 3.74 0.00 45.96 3.18
2632 2880 2.026915 CCCTGGATGAATGTCACAGACA 60.027 50.000 1.95 1.95 46.90 3.41
2633 2881 2.636830 CCCTGGATGAATGTCACAGAC 58.363 52.381 0.00 0.00 0.00 3.51
2634 2882 1.065199 GCCCTGGATGAATGTCACAGA 60.065 52.381 0.00 0.00 0.00 3.41
2635 2883 1.386533 GCCCTGGATGAATGTCACAG 58.613 55.000 0.00 0.00 0.00 3.66
2636 2884 0.392863 CGCCCTGGATGAATGTCACA 60.393 55.000 0.00 0.00 0.00 3.58
2637 2885 0.107703 TCGCCCTGGATGAATGTCAC 60.108 55.000 0.00 0.00 0.00 3.67
2638 2886 0.107703 GTCGCCCTGGATGAATGTCA 60.108 55.000 0.00 0.00 0.00 3.58
2639 2887 0.107703 TGTCGCCCTGGATGAATGTC 60.108 55.000 0.00 0.00 0.00 3.06
2640 2888 0.392998 GTGTCGCCCTGGATGAATGT 60.393 55.000 0.00 0.00 0.00 2.71
2641 2889 1.431488 CGTGTCGCCCTGGATGAATG 61.431 60.000 0.00 0.00 0.00 2.67
2642 2890 1.153369 CGTGTCGCCCTGGATGAAT 60.153 57.895 0.00 0.00 0.00 2.57
2643 2891 2.264480 CGTGTCGCCCTGGATGAA 59.736 61.111 0.00 0.00 0.00 2.57
2644 2892 2.678580 TCGTGTCGCCCTGGATGA 60.679 61.111 0.00 0.00 0.00 2.92
2645 2893 2.509336 GTCGTGTCGCCCTGGATG 60.509 66.667 0.00 0.00 0.00 3.51
2646 2894 4.129737 CGTCGTGTCGCCCTGGAT 62.130 66.667 0.00 0.00 0.00 3.41
2726 2974 4.849329 GTGTAGGCGCCCTCGTCG 62.849 72.222 26.15 0.00 46.46 5.12
2869 3117 2.747855 CCTTGTGCCGGAAGAGCC 60.748 66.667 5.05 0.00 0.00 4.70
2946 3194 1.620818 CCCCTCCAAAGAATCCCCC 59.379 63.158 0.00 0.00 0.00 5.40
2947 3195 0.924226 TCCCCCTCCAAAGAATCCCC 60.924 60.000 0.00 0.00 0.00 4.81
2948 3196 0.259065 GTCCCCCTCCAAAGAATCCC 59.741 60.000 0.00 0.00 0.00 3.85
2949 3197 1.299939 AGTCCCCCTCCAAAGAATCC 58.700 55.000 0.00 0.00 0.00 3.01
2950 3198 2.041755 ACAAGTCCCCCTCCAAAGAATC 59.958 50.000 0.00 0.00 0.00 2.52
2951 3199 2.073776 ACAAGTCCCCCTCCAAAGAAT 58.926 47.619 0.00 0.00 0.00 2.40
2952 3200 1.144913 CACAAGTCCCCCTCCAAAGAA 59.855 52.381 0.00 0.00 0.00 2.52
2953 3201 0.771127 CACAAGTCCCCCTCCAAAGA 59.229 55.000 0.00 0.00 0.00 2.52
3022 3282 5.175859 CAACACAATGTACCCCTACTACAG 58.824 45.833 0.00 0.00 0.00 2.74
3023 3283 4.594062 ACAACACAATGTACCCCTACTACA 59.406 41.667 0.00 0.00 0.00 2.74
3050 3310 1.210155 GATGGTGCTCGCCAAACAC 59.790 57.895 6.23 0.00 42.48 3.32
3051 3311 1.971167 GGATGGTGCTCGCCAAACA 60.971 57.895 6.23 0.00 42.48 2.83
3052 3312 1.244019 AAGGATGGTGCTCGCCAAAC 61.244 55.000 6.23 2.86 42.48 2.93
3053 3313 0.539438 AAAGGATGGTGCTCGCCAAA 60.539 50.000 6.23 0.00 42.48 3.28
3054 3314 0.539438 AAAAGGATGGTGCTCGCCAA 60.539 50.000 6.23 0.00 42.48 4.52
3124 3384 4.871933 CTGGAAAACAGGGCATAAACTT 57.128 40.909 0.00 0.00 43.70 2.66
3137 3402 3.058224 CGGTCCTGATTTCACTGGAAAAC 60.058 47.826 0.00 0.00 45.52 2.43
3146 3411 3.515502 ACTGAATCTCGGTCCTGATTTCA 59.484 43.478 7.96 7.96 27.61 2.69
3152 3417 1.546029 TGTCACTGAATCTCGGTCCTG 59.454 52.381 0.00 0.00 32.75 3.86
3158 3423 3.619929 TGATTGCATGTCACTGAATCTCG 59.380 43.478 0.00 0.00 0.00 4.04
3189 3471 1.278127 GGATCTGGGGTGTCGAAAAGA 59.722 52.381 0.00 0.00 0.00 2.52
3191 3473 1.060729 TGGATCTGGGGTGTCGAAAA 58.939 50.000 0.00 0.00 0.00 2.29
3199 3481 2.702093 CAAGAGGTGGATCTGGGGT 58.298 57.895 0.00 0.00 0.00 4.95
3201 3483 1.277580 AGCCAAGAGGTGGATCTGGG 61.278 60.000 0.00 0.00 45.30 4.45
3242 3576 6.585695 AATCAATAAAGCTAGCCATGATGG 57.414 37.500 12.13 7.21 41.55 3.51
3244 3578 7.828508 TGAAATCAATAAAGCTAGCCATGAT 57.171 32.000 12.13 11.19 0.00 2.45
3246 3580 7.760794 TGTTTGAAATCAATAAAGCTAGCCATG 59.239 33.333 12.13 3.85 35.55 3.66
3247 3581 7.839907 TGTTTGAAATCAATAAAGCTAGCCAT 58.160 30.769 12.13 2.74 35.55 4.40
3248 3582 7.225784 TGTTTGAAATCAATAAAGCTAGCCA 57.774 32.000 12.13 0.00 35.55 4.75
3249 3583 6.753744 CCTGTTTGAAATCAATAAAGCTAGCC 59.246 38.462 12.13 0.00 35.55 3.93
3259 3593 8.522830 ACGATGTAATTCCTGTTTGAAATCAAT 58.477 29.630 0.00 0.00 35.55 2.57
3260 3594 7.881142 ACGATGTAATTCCTGTTTGAAATCAA 58.119 30.769 0.00 0.00 0.00 2.57
3261 3595 7.390440 AGACGATGTAATTCCTGTTTGAAATCA 59.610 33.333 0.00 0.00 0.00 2.57
3262 3596 7.752695 AGACGATGTAATTCCTGTTTGAAATC 58.247 34.615 0.00 0.00 0.00 2.17
3263 3597 7.687941 AGACGATGTAATTCCTGTTTGAAAT 57.312 32.000 0.00 0.00 0.00 2.17
3264 3598 7.148705 CGTAGACGATGTAATTCCTGTTTGAAA 60.149 37.037 0.00 0.00 43.02 2.69
3265 3599 6.309494 CGTAGACGATGTAATTCCTGTTTGAA 59.691 38.462 0.00 0.00 43.02 2.69
3266 3600 5.803461 CGTAGACGATGTAATTCCTGTTTGA 59.197 40.000 0.00 0.00 43.02 2.69
3267 3601 5.803461 TCGTAGACGATGTAATTCCTGTTTG 59.197 40.000 0.00 0.00 44.22 2.93
3268 3602 5.957798 TCGTAGACGATGTAATTCCTGTTT 58.042 37.500 0.00 0.00 44.22 2.83
3269 3603 5.571784 TCGTAGACGATGTAATTCCTGTT 57.428 39.130 0.00 0.00 44.22 3.16
3283 3617 4.323868 GTCTGATTTCCAAACTCGTAGACG 59.676 45.833 0.00 0.00 41.45 4.18
3284 3618 5.227908 TGTCTGATTTCCAAACTCGTAGAC 58.772 41.667 0.00 0.00 34.25 2.59
3285 3619 5.462530 TGTCTGATTTCCAAACTCGTAGA 57.537 39.130 0.00 0.00 0.00 2.59
3286 3620 5.389935 GCTTGTCTGATTTCCAAACTCGTAG 60.390 44.000 0.00 0.00 0.00 3.51
3287 3621 4.451096 GCTTGTCTGATTTCCAAACTCGTA 59.549 41.667 0.00 0.00 0.00 3.43
3288 3622 3.251004 GCTTGTCTGATTTCCAAACTCGT 59.749 43.478 0.00 0.00 0.00 4.18
3289 3623 3.365364 GGCTTGTCTGATTTCCAAACTCG 60.365 47.826 0.00 0.00 0.00 4.18
3290 3624 3.365364 CGGCTTGTCTGATTTCCAAACTC 60.365 47.826 0.00 0.00 0.00 3.01
3291 3625 2.554032 CGGCTTGTCTGATTTCCAAACT 59.446 45.455 0.00 0.00 0.00 2.66
3292 3626 2.351738 CCGGCTTGTCTGATTTCCAAAC 60.352 50.000 0.00 0.00 0.00 2.93
3293 3627 1.885887 CCGGCTTGTCTGATTTCCAAA 59.114 47.619 0.00 0.00 0.00 3.28
3294 3628 1.533625 CCGGCTTGTCTGATTTCCAA 58.466 50.000 0.00 0.00 0.00 3.53
3295 3629 0.322456 CCCGGCTTGTCTGATTTCCA 60.322 55.000 0.00 0.00 0.00 3.53
3296 3630 1.032114 CCCCGGCTTGTCTGATTTCC 61.032 60.000 0.00 0.00 0.00 3.13
3297 3631 1.657751 GCCCCGGCTTGTCTGATTTC 61.658 60.000 0.00 0.00 38.26 2.17
3298 3632 1.678970 GCCCCGGCTTGTCTGATTT 60.679 57.895 0.00 0.00 38.26 2.17
3299 3633 2.044946 GCCCCGGCTTGTCTGATT 60.045 61.111 0.00 0.00 38.26 2.57
3309 3643 4.554036 GGACTGATGAGCCCCGGC 62.554 72.222 0.00 0.00 42.33 6.13
3310 3644 2.446848 ATGGACTGATGAGCCCCGG 61.447 63.158 0.00 0.00 0.00 5.73
3311 3645 1.227764 CATGGACTGATGAGCCCCG 60.228 63.158 0.00 0.00 0.00 5.73
3312 3646 0.548031 TTCATGGACTGATGAGCCCC 59.452 55.000 0.00 0.00 33.86 5.80
3313 3647 2.653234 ATTCATGGACTGATGAGCCC 57.347 50.000 0.00 0.00 33.86 5.19
3314 3648 4.454678 TGTAATTCATGGACTGATGAGCC 58.545 43.478 0.00 0.00 33.86 4.70
3315 3649 6.441093 TTTGTAATTCATGGACTGATGAGC 57.559 37.500 0.00 0.00 33.86 4.26
3316 3650 8.447924 AGATTTGTAATTCATGGACTGATGAG 57.552 34.615 0.00 0.00 33.86 2.90
3317 3651 8.812513 AAGATTTGTAATTCATGGACTGATGA 57.187 30.769 0.00 0.00 32.72 2.92
3318 3652 9.941664 GTAAGATTTGTAATTCATGGACTGATG 57.058 33.333 0.00 0.00 32.72 3.07
3319 3653 9.911788 AGTAAGATTTGTAATTCATGGACTGAT 57.088 29.630 0.00 0.00 32.72 2.90
3348 3682 4.312443 TGCGCTAGCTAGTTACTGTTTTT 58.688 39.130 21.62 0.00 45.42 1.94
3349 3683 3.921677 TGCGCTAGCTAGTTACTGTTTT 58.078 40.909 21.62 0.00 45.42 2.43
3350 3684 3.587797 TGCGCTAGCTAGTTACTGTTT 57.412 42.857 21.62 0.00 45.42 2.83
3351 3685 3.448686 CATGCGCTAGCTAGTTACTGTT 58.551 45.455 21.62 0.00 45.42 3.16
3352 3686 2.799917 GCATGCGCTAGCTAGTTACTGT 60.800 50.000 21.62 1.68 45.42 3.55
3353 3687 1.789464 GCATGCGCTAGCTAGTTACTG 59.211 52.381 21.62 14.68 45.42 2.74
3354 3688 1.600663 CGCATGCGCTAGCTAGTTACT 60.601 52.381 29.09 2.74 45.42 2.24
3355 3689 0.778815 CGCATGCGCTAGCTAGTTAC 59.221 55.000 29.09 11.85 45.42 2.50
3356 3690 3.179433 CGCATGCGCTAGCTAGTTA 57.821 52.632 29.09 9.08 45.42 2.24
3357 3691 4.018609 CGCATGCGCTAGCTAGTT 57.981 55.556 29.09 2.57 45.42 2.24
3367 3701 4.541482 AATCAAGCGGCGCATGCG 62.541 61.111 34.83 34.83 44.10 4.73
3368 3702 2.202650 AAATCAAGCGGCGCATGC 60.203 55.556 35.02 13.41 41.71 4.06
3369 3703 0.456482 TTCAAATCAAGCGGCGCATG 60.456 50.000 35.02 31.87 0.00 4.06
3370 3704 0.179156 CTTCAAATCAAGCGGCGCAT 60.179 50.000 35.02 21.29 0.00 4.73
3371 3705 1.209898 CTTCAAATCAAGCGGCGCA 59.790 52.632 35.02 14.60 0.00 6.09
3372 3706 0.109781 TTCTTCAAATCAAGCGGCGC 60.110 50.000 26.86 26.86 0.00 6.53
3373 3707 1.606606 GTTCTTCAAATCAAGCGGCG 58.393 50.000 0.51 0.51 0.00 6.46
3374 3708 1.196808 TCGTTCTTCAAATCAAGCGGC 59.803 47.619 0.00 0.00 0.00 6.53
3375 3709 2.726066 GCTCGTTCTTCAAATCAAGCGG 60.726 50.000 0.00 0.00 0.00 5.52
3376 3710 2.096268 TGCTCGTTCTTCAAATCAAGCG 60.096 45.455 0.00 0.00 0.00 4.68
3377 3711 3.229552 GTGCTCGTTCTTCAAATCAAGC 58.770 45.455 0.00 0.00 0.00 4.01
3378 3712 4.472691 TGTGCTCGTTCTTCAAATCAAG 57.527 40.909 0.00 0.00 0.00 3.02
3379 3713 4.891627 TTGTGCTCGTTCTTCAAATCAA 57.108 36.364 0.00 0.00 0.00 2.57
3380 3714 4.275689 ACATTGTGCTCGTTCTTCAAATCA 59.724 37.500 0.00 0.00 0.00 2.57
3381 3715 4.787598 ACATTGTGCTCGTTCTTCAAATC 58.212 39.130 0.00 0.00 0.00 2.17
3382 3716 4.836125 ACATTGTGCTCGTTCTTCAAAT 57.164 36.364 0.00 0.00 0.00 2.32
3383 3717 4.630894 AACATTGTGCTCGTTCTTCAAA 57.369 36.364 0.00 0.00 0.00 2.69
3384 3718 4.630894 AAACATTGTGCTCGTTCTTCAA 57.369 36.364 0.00 0.00 0.00 2.69
3385 3719 5.743026 TTAAACATTGTGCTCGTTCTTCA 57.257 34.783 0.00 0.00 0.00 3.02
3386 3720 6.427150 TCTTTAAACATTGTGCTCGTTCTTC 58.573 36.000 0.00 0.00 0.00 2.87
3387 3721 6.371809 TCTTTAAACATTGTGCTCGTTCTT 57.628 33.333 0.00 0.00 0.00 2.52
3388 3722 6.560253 ATCTTTAAACATTGTGCTCGTTCT 57.440 33.333 0.00 0.00 0.00 3.01
3389 3723 7.270579 GGTTATCTTTAAACATTGTGCTCGTTC 59.729 37.037 0.00 0.00 0.00 3.95
3390 3724 7.040686 AGGTTATCTTTAAACATTGTGCTCGTT 60.041 33.333 0.00 0.00 0.00 3.85
3391 3725 6.430000 AGGTTATCTTTAAACATTGTGCTCGT 59.570 34.615 0.00 0.00 0.00 4.18
3392 3726 6.842163 AGGTTATCTTTAAACATTGTGCTCG 58.158 36.000 0.00 0.00 0.00 5.03
3393 3727 7.755373 GGAAGGTTATCTTTAAACATTGTGCTC 59.245 37.037 0.00 0.00 35.50 4.26
3394 3728 7.309805 GGGAAGGTTATCTTTAAACATTGTGCT 60.310 37.037 0.00 0.00 35.50 4.40
3395 3729 6.811665 GGGAAGGTTATCTTTAAACATTGTGC 59.188 38.462 0.00 0.00 35.50 4.57
3396 3730 7.891561 TGGGAAGGTTATCTTTAAACATTGTG 58.108 34.615 0.00 0.00 35.50 3.33
3397 3731 8.485578 TTGGGAAGGTTATCTTTAAACATTGT 57.514 30.769 0.00 0.00 35.50 2.71
3398 3732 9.942850 AATTGGGAAGGTTATCTTTAAACATTG 57.057 29.630 0.00 0.00 35.50 2.82
3399 3733 9.942850 CAATTGGGAAGGTTATCTTTAAACATT 57.057 29.630 0.00 0.00 35.50 2.71
3400 3734 8.539544 CCAATTGGGAAGGTTATCTTTAAACAT 58.460 33.333 17.36 0.00 40.01 2.71
3401 3735 7.526359 GCCAATTGGGAAGGTTATCTTTAAACA 60.526 37.037 25.73 0.00 40.01 2.83
3402 3736 6.816640 GCCAATTGGGAAGGTTATCTTTAAAC 59.183 38.462 25.73 0.00 40.01 2.01
3403 3737 6.728632 AGCCAATTGGGAAGGTTATCTTTAAA 59.271 34.615 25.73 0.00 40.01 1.52
3404 3738 6.154363 CAGCCAATTGGGAAGGTTATCTTTAA 59.846 38.462 25.73 0.00 40.01 1.52
3405 3739 5.656416 CAGCCAATTGGGAAGGTTATCTTTA 59.344 40.000 25.73 0.00 40.01 1.85
3406 3740 4.467438 CAGCCAATTGGGAAGGTTATCTTT 59.533 41.667 25.73 0.00 40.01 2.52
3407 3741 4.026052 CAGCCAATTGGGAAGGTTATCTT 58.974 43.478 25.73 0.00 40.01 2.40
3408 3742 3.011708 ACAGCCAATTGGGAAGGTTATCT 59.988 43.478 25.73 8.04 40.01 1.98
3409 3743 3.365472 ACAGCCAATTGGGAAGGTTATC 58.635 45.455 25.73 5.76 40.01 1.75
3410 3744 3.011708 AGACAGCCAATTGGGAAGGTTAT 59.988 43.478 25.73 0.00 40.01 1.89
3411 3745 2.378547 AGACAGCCAATTGGGAAGGTTA 59.621 45.455 25.73 0.00 40.01 2.85
3412 3746 1.147817 AGACAGCCAATTGGGAAGGTT 59.852 47.619 25.73 0.00 40.01 3.50
3413 3747 0.779997 AGACAGCCAATTGGGAAGGT 59.220 50.000 25.73 2.37 40.01 3.50
3414 3748 2.806945 TAGACAGCCAATTGGGAAGG 57.193 50.000 25.73 0.00 40.01 3.46
3415 3749 5.665916 AAAATAGACAGCCAATTGGGAAG 57.334 39.130 25.73 0.58 40.01 3.46
3451 3785 8.407064 TGCGTAAAGATTCTAAAAACAAAAGGA 58.593 29.630 0.00 0.00 0.00 3.36
3464 3798 9.191995 CAAAAGGTAAAAATGCGTAAAGATTCT 57.808 29.630 0.00 0.00 0.00 2.40
3482 3816 9.667989 GCGTAAAGATTCTAAAAACAAAAGGTA 57.332 29.630 0.00 0.00 0.00 3.08
3495 3829 7.330208 GTCAGGTAAAACTGCGTAAAGATTCTA 59.670 37.037 0.00 0.00 38.36 2.10
3510 3844 6.475402 CCAAACAATGTTGAGTCAGGTAAAAC 59.525 38.462 0.00 0.00 0.00 2.43
3547 3881 0.706729 GGAGTGTTCGTTCGTTAGCG 59.293 55.000 0.00 0.00 39.92 4.26
3573 3907 3.188786 CTCTACGCCACGGCTTGC 61.189 66.667 6.48 0.00 39.32 4.01
3574 3908 3.188786 GCTCTACGCCACGGCTTG 61.189 66.667 6.48 0.00 39.32 4.01
3583 3917 0.037232 ACTTGAGTTGGGCTCTACGC 60.037 55.000 0.00 0.00 44.41 4.42
3584 3918 1.546476 AGACTTGAGTTGGGCTCTACG 59.454 52.381 0.00 0.00 44.41 3.51
3585 3919 2.563179 TCAGACTTGAGTTGGGCTCTAC 59.437 50.000 0.00 0.00 44.41 2.59
3586 3920 2.563179 GTCAGACTTGAGTTGGGCTCTA 59.437 50.000 0.00 0.00 44.41 2.43
3587 3921 1.346068 GTCAGACTTGAGTTGGGCTCT 59.654 52.381 0.00 0.00 44.41 4.09
3588 3922 1.802069 GTCAGACTTGAGTTGGGCTC 58.198 55.000 0.00 0.00 44.36 4.70
3589 3923 0.034059 CGTCAGACTTGAGTTGGGCT 59.966 55.000 0.00 0.00 32.98 5.19
3599 3933 3.003763 GGAGGGGGCGTCAGACTT 61.004 66.667 0.00 0.00 0.00 3.01
3625 3959 1.600912 GCGGCTACGGAGAAGAAGATC 60.601 57.143 0.00 0.00 41.36 2.75
3626 3960 0.386113 GCGGCTACGGAGAAGAAGAT 59.614 55.000 0.00 0.00 41.36 2.40
3627 3961 0.963856 TGCGGCTACGGAGAAGAAGA 60.964 55.000 0.00 0.00 41.36 2.87
3628 3962 1.511305 TGCGGCTACGGAGAAGAAG 59.489 57.895 0.00 0.00 41.36 2.85
3662 3996 3.696676 GATCGGATCGGGGGCCTC 61.697 72.222 0.84 0.00 0.00 4.70
3700 4034 0.321122 GGGACTCACCTCAAGCAGTG 60.321 60.000 0.00 0.00 38.98 3.66
3701 4035 1.821061 CGGGACTCACCTCAAGCAGT 61.821 60.000 0.00 0.00 38.98 4.40
3702 4036 1.079543 CGGGACTCACCTCAAGCAG 60.080 63.158 0.00 0.00 38.98 4.24
3703 4037 1.816863 GACGGGACTCACCTCAAGCA 61.817 60.000 0.00 0.00 38.98 3.91
3744 4078 1.615814 CGGAGGGAGAGAAGGGAGA 59.384 63.158 0.00 0.00 0.00 3.71
3745 4079 4.268720 CGGAGGGAGAGAAGGGAG 57.731 66.667 0.00 0.00 0.00 4.30
3762 4096 2.817056 GGAGAGCAGCCTGGGATCC 61.817 68.421 1.92 1.92 0.00 3.36
3789 4123 0.825840 ATCTAGGACTGGAGCGGCTC 60.826 60.000 21.57 21.57 0.00 4.70
3793 4130 1.243902 GGAGATCTAGGACTGGAGCG 58.756 60.000 0.00 0.00 31.56 5.03
3825 4162 2.261172 TAGTCACTACGCACGCGCAT 62.261 55.000 12.02 0.00 44.19 4.73
3826 4163 2.844224 CTAGTCACTACGCACGCGCA 62.844 60.000 12.02 0.00 44.19 6.09
3828 4165 0.453950 AACTAGTCACTACGCACGCG 60.454 55.000 10.36 10.36 46.03 6.01
3829 4166 1.694639 AAACTAGTCACTACGCACGC 58.305 50.000 0.00 0.00 0.00 5.34
3830 4167 4.715896 TCTAAAACTAGTCACTACGCACG 58.284 43.478 0.00 0.00 0.00 5.34
3831 4168 6.585322 ACATTCTAAAACTAGTCACTACGCAC 59.415 38.462 0.00 0.00 0.00 5.34
3832 4169 6.684686 ACATTCTAAAACTAGTCACTACGCA 58.315 36.000 0.00 0.00 0.00 5.24
3833 4170 7.045096 CGTACATTCTAAAACTAGTCACTACGC 60.045 40.741 0.00 0.00 0.00 4.42
3834 4171 7.959651 ACGTACATTCTAAAACTAGTCACTACG 59.040 37.037 0.00 1.19 0.00 3.51
3837 4174 9.007901 AGTACGTACATTCTAAAACTAGTCACT 57.992 33.333 26.55 0.00 0.00 3.41
3838 4175 9.059485 CAGTACGTACATTCTAAAACTAGTCAC 57.941 37.037 26.55 0.00 0.00 3.67
3839 4176 8.786898 ACAGTACGTACATTCTAAAACTAGTCA 58.213 33.333 26.55 0.00 0.00 3.41
3845 4182 9.398170 TCAACTACAGTACGTACATTCTAAAAC 57.602 33.333 26.55 0.00 0.00 2.43
3858 4195 7.806487 TCAAGTAGAAACATCAACTACAGTACG 59.194 37.037 0.00 0.00 38.92 3.67
3859 4196 9.640963 ATCAAGTAGAAACATCAACTACAGTAC 57.359 33.333 0.00 0.00 38.92 2.73
3873 4210 1.130561 GGCACCGCATCAAGTAGAAAC 59.869 52.381 0.00 0.00 0.00 2.78
3887 4224 6.867662 AAATCTAGAATTATGAAGGCACCG 57.132 37.500 0.00 0.00 0.00 4.94
3888 4225 8.225603 TGAAAATCTAGAATTATGAAGGCACC 57.774 34.615 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.