Multiple sequence alignment - TraesCS7D01G453800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G453800 chr7D 100.000 5393 0 0 1 5393 573438035 573432643 0.000000e+00 9960.0
1 TraesCS7D01G453800 chr7D 81.250 368 55 10 5025 5387 117574118 117573760 8.840000e-73 285.0
2 TraesCS7D01G453800 chr7D 80.749 374 58 9 5023 5393 595737465 595737103 4.110000e-71 279.0
3 TraesCS7D01G453800 chr7D 78.947 361 63 7 5034 5390 38116106 38116457 3.250000e-57 233.0
4 TraesCS7D01G453800 chr7D 81.379 290 41 7 5106 5392 447945819 447946098 1.950000e-54 224.0
5 TraesCS7D01G453800 chr7B 94.879 2187 66 16 2839 5013 632176791 632174639 0.000000e+00 3376.0
6 TraesCS7D01G453800 chr7B 94.902 1432 54 11 968 2387 632178928 632177504 0.000000e+00 2222.0
7 TraesCS7D01G453800 chr7B 84.043 846 85 25 1 807 632197709 632196875 0.000000e+00 769.0
8 TraesCS7D01G453800 chr7B 98.524 271 4 0 2546 2816 632177106 632176836 3.780000e-131 479.0
9 TraesCS7D01G453800 chr7B 92.701 274 20 0 5120 5393 632174642 632174369 3.910000e-106 396.0
10 TraesCS7D01G453800 chr7B 98.889 90 1 0 2425 2514 632177191 632177102 1.550000e-35 161.0
11 TraesCS7D01G453800 chr7B 100.000 47 0 0 2770 2816 632176837 632176791 2.680000e-13 87.9
12 TraesCS7D01G453800 chr7B 97.297 37 1 0 819 855 632179934 632179898 4.510000e-06 63.9
13 TraesCS7D01G453800 chr7B 100.000 28 0 0 3880 3907 632175687 632175660 1.000000e-02 52.8
14 TraesCS7D01G453800 chr7A 97.644 1910 37 6 2832 4738 663380181 663378277 0.000000e+00 3271.0
15 TraesCS7D01G453800 chr7A 94.923 1615 67 10 782 2387 663382509 663380901 0.000000e+00 2514.0
16 TraesCS7D01G453800 chr7A 97.250 400 4 1 2401 2800 663380574 663380182 0.000000e+00 671.0
17 TraesCS7D01G453800 chr7A 78.977 352 60 10 5023 5370 85151329 85151670 1.510000e-55 228.0
18 TraesCS7D01G453800 chr7A 100.000 28 0 0 2789 2816 99813520 99813493 1.000000e-02 52.8
19 TraesCS7D01G453800 chr7A 100.000 28 0 0 3880 3907 663379060 663379033 1.000000e-02 52.8
20 TraesCS7D01G453800 chr4B 94.877 1464 56 9 3100 4559 354349361 354350809 0.000000e+00 2270.0
21 TraesCS7D01G453800 chr4B 94.323 775 30 5 1615 2384 354347661 354348426 0.000000e+00 1175.0
22 TraesCS7D01G453800 chr4B 93.579 732 43 2 888 1618 354341418 354342146 0.000000e+00 1088.0
23 TraesCS7D01G453800 chr4B 91.710 386 15 1 2407 2792 354348755 354349123 2.230000e-143 520.0
24 TraesCS7D01G453800 chr4B 97.368 152 4 0 2865 3016 354349117 354349268 5.360000e-65 259.0
25 TraesCS7D01G453800 chr4D 94.065 1466 74 9 888 2351 182070815 182069361 0.000000e+00 2213.0
26 TraesCS7D01G453800 chr4D 94.505 1110 42 8 3139 4245 182068513 182067420 0.000000e+00 1694.0
27 TraesCS7D01G453800 chr4D 92.099 405 15 1 2388 2792 182069355 182068968 6.100000e-154 555.0
28 TraesCS7D01G453800 chr4D 96.057 279 9 1 2865 3141 182068974 182068696 2.290000e-123 453.0
29 TraesCS7D01G453800 chr4D 94.615 260 11 2 4241 4498 182067341 182067083 3.030000e-107 399.0
30 TraesCS7D01G453800 chr4D 100.000 28 0 0 3880 3907 182067708 182067681 1.000000e-02 52.8
31 TraesCS7D01G453800 chr4A 93.301 1433 81 8 949 2373 369539691 369541116 0.000000e+00 2100.0
32 TraesCS7D01G453800 chr4A 95.986 872 27 6 2865 3733 369541882 369542748 0.000000e+00 1410.0
33 TraesCS7D01G453800 chr4A 92.635 611 28 7 3635 4243 369542748 369543343 0.000000e+00 863.0
34 TraesCS7D01G453800 chr4A 94.278 367 18 2 4241 4604 369543502 369543868 4.720000e-155 558.0
35 TraesCS7D01G453800 chr4A 91.111 405 19 1 2388 2792 369541501 369541888 2.860000e-147 532.0
36 TraesCS7D01G453800 chr4A 96.774 31 1 0 3877 3907 369543054 369543084 1.000000e-02 52.8
37 TraesCS7D01G453800 chr2B 85.239 691 83 10 1 680 196198088 196197406 0.000000e+00 693.0
38 TraesCS7D01G453800 chr2B 78.970 233 40 7 5146 5378 455569038 455568815 3.360000e-32 150.0
39 TraesCS7D01G453800 chr3D 83.780 709 82 21 1 705 533720411 533719732 4.550000e-180 641.0
40 TraesCS7D01G453800 chr3D 82.663 721 103 17 14 726 566627061 566627767 2.130000e-173 619.0
41 TraesCS7D01G453800 chr3D 75.841 327 54 21 5048 5369 524780474 524780168 5.630000e-30 143.0
42 TraesCS7D01G453800 chr3D 90.909 44 1 3 2787 2829 20245675 20245634 7.550000e-04 56.5
43 TraesCS7D01G453800 chr3D 92.500 40 0 3 2788 2826 463716863 463716900 3.000000e-03 54.7
44 TraesCS7D01G453800 chr5B 83.650 685 91 12 1 680 158785451 158784783 4.590000e-175 625.0
45 TraesCS7D01G453800 chr5B 90.476 42 1 3 2789 2829 364132773 364132734 1.000000e-02 52.8
46 TraesCS7D01G453800 chr6A 83.511 655 92 12 1 650 487210395 487209752 1.000000e-166 597.0
47 TraesCS7D01G453800 chr2A 81.745 745 103 24 7 742 187333083 187333803 4.650000e-165 592.0
48 TraesCS7D01G453800 chr2A 82.927 205 27 2 5177 5380 764816766 764816963 1.540000e-40 178.0
49 TraesCS7D01G453800 chr6B 85.978 542 67 6 2 540 444677482 444678017 6.060000e-159 571.0
50 TraesCS7D01G453800 chr2D 84.892 556 75 5 1 552 183614858 183615408 2.200000e-153 553.0
51 TraesCS7D01G453800 chr2D 78.616 318 53 11 5078 5388 586623119 586623428 4.260000e-46 196.0
52 TraesCS7D01G453800 chr2D 77.987 318 52 15 5078 5388 586484241 586484547 3.320000e-42 183.0
53 TraesCS7D01G453800 chr2D 80.370 270 29 14 5126 5380 638922890 638923150 3.320000e-42 183.0
54 TraesCS7D01G453800 chr2D 90.000 50 4 1 5030 5079 497269064 497269112 4.510000e-06 63.9
55 TraesCS7D01G453800 chr2D 92.308 39 2 1 2788 2826 625519548 625519585 3.000000e-03 54.7
56 TraesCS7D01G453800 chr5D 81.481 324 50 4 5072 5393 273482563 273482248 1.930000e-64 257.0
57 TraesCS7D01G453800 chr1D 81.595 326 44 12 5069 5387 101994382 101994698 6.930000e-64 255.0
58 TraesCS7D01G453800 chr1D 90.476 42 1 3 2789 2829 476562497 476562458 1.000000e-02 52.8
59 TraesCS7D01G453800 chr3A 77.143 350 64 10 5048 5393 659049804 659049467 7.130000e-44 189.0
60 TraesCS7D01G453800 chr6D 76.716 335 54 10 5035 5366 126514768 126515081 1.200000e-36 165.0
61 TraesCS7D01G453800 chr5A 90.476 42 1 3 2789 2829 410504959 410504920 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G453800 chr7D 573432643 573438035 5392 True 9960.000000 9960 100.000000 1 5393 1 chr7D.!!$R2 5392
1 TraesCS7D01G453800 chr7B 632174369 632179934 5565 True 854.825000 3376 97.149000 819 5393 8 chr7B.!!$R2 4574
2 TraesCS7D01G453800 chr7B 632196875 632197709 834 True 769.000000 769 84.043000 1 807 1 chr7B.!!$R1 806
3 TraesCS7D01G453800 chr7A 663378277 663382509 4232 True 1627.200000 3271 97.454250 782 4738 4 chr7A.!!$R2 3956
4 TraesCS7D01G453800 chr4B 354341418 354342146 728 False 1088.000000 1088 93.579000 888 1618 1 chr4B.!!$F1 730
5 TraesCS7D01G453800 chr4B 354347661 354350809 3148 False 1056.000000 2270 94.569500 1615 4559 4 chr4B.!!$F2 2944
6 TraesCS7D01G453800 chr4D 182067083 182070815 3732 True 894.466667 2213 95.223500 888 4498 6 chr4D.!!$R1 3610
7 TraesCS7D01G453800 chr4A 369539691 369543868 4177 False 919.300000 2100 94.014167 949 4604 6 chr4A.!!$F1 3655
8 TraesCS7D01G453800 chr2B 196197406 196198088 682 True 693.000000 693 85.239000 1 680 1 chr2B.!!$R1 679
9 TraesCS7D01G453800 chr3D 533719732 533720411 679 True 641.000000 641 83.780000 1 705 1 chr3D.!!$R3 704
10 TraesCS7D01G453800 chr3D 566627061 566627767 706 False 619.000000 619 82.663000 14 726 1 chr3D.!!$F2 712
11 TraesCS7D01G453800 chr5B 158784783 158785451 668 True 625.000000 625 83.650000 1 680 1 chr5B.!!$R1 679
12 TraesCS7D01G453800 chr6A 487209752 487210395 643 True 597.000000 597 83.511000 1 650 1 chr6A.!!$R1 649
13 TraesCS7D01G453800 chr2A 187333083 187333803 720 False 592.000000 592 81.745000 7 742 1 chr2A.!!$F1 735
14 TraesCS7D01G453800 chr6B 444677482 444678017 535 False 571.000000 571 85.978000 2 540 1 chr6B.!!$F1 538
15 TraesCS7D01G453800 chr2D 183614858 183615408 550 False 553.000000 553 84.892000 1 552 1 chr2D.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 547 0.040058 TACCCGGTTCTACAGGCTCA 59.960 55.000 0.00 0.00 31.76 4.26 F
735 768 0.240145 GCGGTGGCTGAAAAACCTAC 59.760 55.000 0.00 0.00 35.83 3.18 F
738 771 0.240145 GTGGCTGAAAAACCTACCGC 59.760 55.000 0.00 0.00 0.00 5.68 F
1348 2242 0.457851 AGACCTACGTGCTGATCTGC 59.542 55.000 16.98 16.98 0.00 4.26 F
1490 2384 0.818296 CAGGTACTCGAGTCCTTGGG 59.182 60.000 23.89 12.25 34.60 4.12 F
1509 2403 1.363885 GCATGTGACGCTGATGCTCA 61.364 55.000 0.00 0.00 39.54 4.26 F
1697 2607 1.704628 TGTGGATGTGGGGCTATATGG 59.295 52.381 0.00 0.00 0.00 2.74 F
2564 3864 2.299013 TGACCATCGCACACTAACTTCT 59.701 45.455 0.00 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1643 2553 0.595095 ACGAAGTACCGGACTCACAC 59.405 55.000 9.46 0.0 41.94 3.82 R
2397 3687 1.230635 TGCTTTGGAGAGTCAAGCGC 61.231 55.000 0.00 0.0 0.00 5.92 R
2575 3875 6.183360 TGTTGTAAAATGCGTTTTAGGTTCCT 60.183 34.615 21.36 0.0 39.69 3.36 R
2817 4117 0.643310 TGTCGCATATTCGTTGTCGC 59.357 50.000 0.00 0.0 36.96 5.19 R
3150 4667 2.100749 TGTCCATCCTATACAGCACACG 59.899 50.000 0.00 0.0 0.00 4.49 R
3692 5313 5.426833 AGAAGCAGGGTATTCTAACTGTCAT 59.573 40.000 0.00 0.0 34.04 3.06 R
3702 5323 4.755266 TCACCTAAGAAGCAGGGTATTC 57.245 45.455 0.00 0.0 37.51 1.75 R
4700 6512 2.445905 AGATCATGGAGCCAATGGATGT 59.554 45.455 2.05 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 161 0.178767 CCTCATCATCAACGAGGGCA 59.821 55.000 0.00 0.00 42.27 5.36
372 380 2.040544 CGAGGAAGGCGGCATTGTT 61.041 57.895 13.08 0.00 0.00 2.83
477 485 1.565156 GCGACGACATGCAGGACAAA 61.565 55.000 4.84 0.00 0.00 2.83
523 547 0.040058 TACCCGGTTCTACAGGCTCA 59.960 55.000 0.00 0.00 31.76 4.26
546 570 3.861797 ATGTAGAAGGCGGGCGGG 61.862 66.667 0.00 0.00 0.00 6.13
653 686 7.786178 TCAATGAAATTATCTAGGTTGGACG 57.214 36.000 0.00 0.00 32.46 4.79
654 687 7.561251 TCAATGAAATTATCTAGGTTGGACGA 58.439 34.615 0.00 0.00 32.46 4.20
655 688 8.044309 TCAATGAAATTATCTAGGTTGGACGAA 58.956 33.333 0.00 0.00 32.46 3.85
656 689 8.673711 CAATGAAATTATCTAGGTTGGACGAAA 58.326 33.333 0.00 0.00 32.46 3.46
657 690 8.980481 ATGAAATTATCTAGGTTGGACGAAAT 57.020 30.769 0.00 0.00 0.00 2.17
658 691 8.801882 TGAAATTATCTAGGTTGGACGAAATT 57.198 30.769 0.00 0.00 0.00 1.82
659 692 8.673711 TGAAATTATCTAGGTTGGACGAAATTG 58.326 33.333 0.00 0.00 0.00 2.32
660 693 8.575649 AAATTATCTAGGTTGGACGAAATTGT 57.424 30.769 0.00 0.00 0.00 2.71
661 694 6.978343 TTATCTAGGTTGGACGAAATTGTG 57.022 37.500 0.00 0.00 0.00 3.33
662 695 4.345859 TCTAGGTTGGACGAAATTGTGT 57.654 40.909 0.00 0.00 0.00 3.72
663 696 4.312443 TCTAGGTTGGACGAAATTGTGTC 58.688 43.478 0.00 2.48 0.00 3.67
664 697 1.871039 AGGTTGGACGAAATTGTGTCG 59.129 47.619 0.00 1.10 44.10 4.35
673 706 3.033185 CGAAATTGTGTCGTGTTTGACC 58.967 45.455 0.00 0.00 38.11 4.02
674 707 2.748461 AATTGTGTCGTGTTTGACCG 57.252 45.000 0.00 0.00 38.11 4.79
675 708 1.942677 ATTGTGTCGTGTTTGACCGA 58.057 45.000 0.00 0.00 38.11 4.69
676 709 1.942677 TTGTGTCGTGTTTGACCGAT 58.057 45.000 0.00 0.00 38.11 4.18
677 710 1.942677 TGTGTCGTGTTTGACCGATT 58.057 45.000 0.00 0.00 38.11 3.34
678 711 2.281517 TGTGTCGTGTTTGACCGATTT 58.718 42.857 0.00 0.00 38.11 2.17
679 712 2.678836 TGTGTCGTGTTTGACCGATTTT 59.321 40.909 0.00 0.00 38.11 1.82
680 713 3.242478 TGTGTCGTGTTTGACCGATTTTC 60.242 43.478 0.00 0.00 38.11 2.29
681 714 3.001939 GTGTCGTGTTTGACCGATTTTCT 59.998 43.478 0.00 0.00 38.11 2.52
682 715 3.001838 TGTCGTGTTTGACCGATTTTCTG 59.998 43.478 0.00 0.00 38.11 3.02
683 716 3.001939 GTCGTGTTTGACCGATTTTCTGT 59.998 43.478 0.00 0.00 35.30 3.41
684 717 3.623960 TCGTGTTTGACCGATTTTCTGTT 59.376 39.130 0.00 0.00 0.00 3.16
685 718 4.095185 TCGTGTTTGACCGATTTTCTGTTT 59.905 37.500 0.00 0.00 0.00 2.83
686 719 4.436523 CGTGTTTGACCGATTTTCTGTTTC 59.563 41.667 0.00 0.00 0.00 2.78
687 720 5.336744 GTGTTTGACCGATTTTCTGTTTCA 58.663 37.500 0.00 0.00 0.00 2.69
688 721 5.802956 GTGTTTGACCGATTTTCTGTTTCAA 59.197 36.000 0.00 0.00 0.00 2.69
689 722 6.309251 GTGTTTGACCGATTTTCTGTTTCAAA 59.691 34.615 0.00 0.00 0.00 2.69
690 723 6.868864 TGTTTGACCGATTTTCTGTTTCAAAA 59.131 30.769 0.00 0.00 0.00 2.44
691 724 7.385205 TGTTTGACCGATTTTCTGTTTCAAAAA 59.615 29.630 0.00 0.00 0.00 1.94
692 725 8.387354 GTTTGACCGATTTTCTGTTTCAAAAAT 58.613 29.630 0.00 0.00 37.69 1.82
693 726 7.692908 TGACCGATTTTCTGTTTCAAAAATC 57.307 32.000 9.44 9.44 43.54 2.17
700 733 9.185192 GATTTTCTGTTTCAAAAATCGTCATCT 57.815 29.630 5.19 0.00 40.22 2.90
701 734 7.912949 TTTCTGTTTCAAAAATCGTCATCTG 57.087 32.000 0.00 0.00 0.00 2.90
702 735 6.000891 TCTGTTTCAAAAATCGTCATCTGG 57.999 37.500 0.00 0.00 0.00 3.86
703 736 5.048782 TCTGTTTCAAAAATCGTCATCTGGG 60.049 40.000 0.00 0.00 0.00 4.45
704 737 4.022416 TGTTTCAAAAATCGTCATCTGGGG 60.022 41.667 0.00 0.00 0.00 4.96
705 738 3.712016 TCAAAAATCGTCATCTGGGGA 57.288 42.857 0.00 0.00 0.00 4.81
706 739 4.235079 TCAAAAATCGTCATCTGGGGAT 57.765 40.909 0.00 0.00 0.00 3.85
715 748 2.521103 ATCTGGGGATGACGTGAGG 58.479 57.895 0.00 0.00 0.00 3.86
716 749 1.050988 ATCTGGGGATGACGTGAGGG 61.051 60.000 0.00 0.00 0.00 4.30
717 750 3.391665 CTGGGGATGACGTGAGGGC 62.392 68.421 0.00 0.00 0.00 5.19
718 751 4.530857 GGGGATGACGTGAGGGCG 62.531 72.222 0.00 0.00 37.94 6.13
719 752 4.530857 GGGATGACGTGAGGGCGG 62.531 72.222 0.00 0.00 35.98 6.13
720 753 3.771160 GGATGACGTGAGGGCGGT 61.771 66.667 0.00 0.00 35.98 5.68
721 754 2.509336 GATGACGTGAGGGCGGTG 60.509 66.667 0.00 0.00 35.98 4.94
722 755 4.082523 ATGACGTGAGGGCGGTGG 62.083 66.667 0.00 0.00 35.98 4.61
727 760 4.329545 GTGAGGGCGGTGGCTGAA 62.330 66.667 0.00 0.00 39.81 3.02
728 761 3.565214 TGAGGGCGGTGGCTGAAA 61.565 61.111 0.00 0.00 39.81 2.69
729 762 2.282180 GAGGGCGGTGGCTGAAAA 60.282 61.111 0.00 0.00 39.81 2.29
730 763 1.901464 GAGGGCGGTGGCTGAAAAA 60.901 57.895 0.00 0.00 39.81 1.94
731 764 2.142357 GAGGGCGGTGGCTGAAAAAC 62.142 60.000 0.00 0.00 39.81 2.43
732 765 2.338620 GGCGGTGGCTGAAAAACC 59.661 61.111 0.00 0.00 39.81 3.27
733 766 2.200337 GGCGGTGGCTGAAAAACCT 61.200 57.895 0.00 0.00 39.81 3.50
734 767 0.891904 GGCGGTGGCTGAAAAACCTA 60.892 55.000 0.00 0.00 39.81 3.08
735 768 0.240145 GCGGTGGCTGAAAAACCTAC 59.760 55.000 0.00 0.00 35.83 3.18
736 769 0.879090 CGGTGGCTGAAAAACCTACC 59.121 55.000 0.00 0.00 0.00 3.18
737 770 0.879090 GGTGGCTGAAAAACCTACCG 59.121 55.000 0.00 0.00 0.00 4.02
738 771 0.240145 GTGGCTGAAAAACCTACCGC 59.760 55.000 0.00 0.00 0.00 5.68
739 772 0.891904 TGGCTGAAAAACCTACCGCC 60.892 55.000 0.00 0.00 36.64 6.13
740 773 1.592400 GGCTGAAAAACCTACCGCCC 61.592 60.000 0.00 0.00 0.00 6.13
741 774 1.592400 GCTGAAAAACCTACCGCCCC 61.592 60.000 0.00 0.00 0.00 5.80
742 775 1.302671 TGAAAAACCTACCGCCCCG 60.303 57.895 0.00 0.00 0.00 5.73
743 776 2.674033 AAAAACCTACCGCCCCGC 60.674 61.111 0.00 0.00 0.00 6.13
744 777 4.728110 AAAACCTACCGCCCCGCC 62.728 66.667 0.00 0.00 0.00 6.13
760 793 4.831307 CCGGTTCGCCTCGAGACG 62.831 72.222 15.52 15.52 37.14 4.18
761 794 4.831307 CGGTTCGCCTCGAGACGG 62.831 72.222 21.10 8.09 37.14 4.79
768 801 3.382832 CCTCGAGACGGCCCTGTT 61.383 66.667 15.71 0.00 0.00 3.16
769 802 2.657237 CTCGAGACGGCCCTGTTT 59.343 61.111 6.58 0.00 0.00 2.83
770 803 1.446272 CTCGAGACGGCCCTGTTTC 60.446 63.158 6.58 0.00 0.00 2.78
771 804 2.154798 CTCGAGACGGCCCTGTTTCA 62.155 60.000 6.58 0.00 0.00 2.69
772 805 1.301401 CGAGACGGCCCTGTTTCAA 60.301 57.895 0.00 0.00 0.00 2.69
773 806 1.291877 CGAGACGGCCCTGTTTCAAG 61.292 60.000 0.00 0.00 0.00 3.02
774 807 1.578206 GAGACGGCCCTGTTTCAAGC 61.578 60.000 0.00 0.00 0.00 4.01
775 808 2.597510 ACGGCCCTGTTTCAAGCC 60.598 61.111 0.00 0.00 42.18 4.35
776 809 3.373565 CGGCCCTGTTTCAAGCCC 61.374 66.667 0.00 0.00 42.66 5.19
777 810 3.373565 GGCCCTGTTTCAAGCCCG 61.374 66.667 0.00 0.00 39.60 6.13
778 811 2.597510 GCCCTGTTTCAAGCCCGT 60.598 61.111 0.00 0.00 0.00 5.28
779 812 2.919494 GCCCTGTTTCAAGCCCGTG 61.919 63.158 0.00 0.00 0.00 4.94
780 813 2.268076 CCCTGTTTCAAGCCCGTGG 61.268 63.158 0.00 0.00 0.00 4.94
824 857 2.202797 CTCGTGGTGGATGGAGCG 60.203 66.667 0.00 0.00 0.00 5.03
857 890 4.506886 TCGTTGTTGACTTGGTTGTTTT 57.493 36.364 0.00 0.00 0.00 2.43
860 893 3.878160 TGTTGACTTGGTTGTTTTCCC 57.122 42.857 0.00 0.00 0.00 3.97
863 896 3.094484 TGACTTGGTTGTTTTCCCAGT 57.906 42.857 0.00 0.00 34.35 4.00
864 897 3.436243 TGACTTGGTTGTTTTCCCAGTT 58.564 40.909 0.00 0.00 32.29 3.16
919 955 4.065281 CCGTCGTCACCTCCACCC 62.065 72.222 0.00 0.00 0.00 4.61
972 1862 4.608774 ACCACCGACCACCTCCGA 62.609 66.667 0.00 0.00 0.00 4.55
1069 1959 4.463879 CCTGGCTCCCACTCGCAG 62.464 72.222 0.00 0.00 0.00 5.18
1333 2226 2.349100 TACGGATCTCGGGGGAGACC 62.349 65.000 8.20 0.38 46.78 3.85
1348 2242 0.457851 AGACCTACGTGCTGATCTGC 59.542 55.000 16.98 16.98 0.00 4.26
1490 2384 0.818296 CAGGTACTCGAGTCCTTGGG 59.182 60.000 23.89 12.25 34.60 4.12
1509 2403 1.363885 GCATGTGACGCTGATGCTCA 61.364 55.000 0.00 0.00 39.54 4.26
1543 2437 4.629065 GTCTGTCGTCGTGAATTTTGATC 58.371 43.478 0.00 0.00 0.00 2.92
1643 2553 8.902540 TGGTATGTATGCTTAGAATACTTTGG 57.097 34.615 11.30 0.00 32.70 3.28
1690 2600 2.275380 GGTGTTGTGGATGTGGGGC 61.275 63.158 0.00 0.00 0.00 5.80
1697 2607 1.704628 TGTGGATGTGGGGCTATATGG 59.295 52.381 0.00 0.00 0.00 2.74
1909 2820 4.872691 CACCTGTATCTGTTCCATCTTGTC 59.127 45.833 0.00 0.00 0.00 3.18
2207 3122 7.696110 GGAATCACCAGAAGGAGAAGATCCG 62.696 52.000 0.00 0.00 45.28 4.18
2559 3859 3.559655 GCATATTGACCATCGCACACTAA 59.440 43.478 0.00 0.00 0.00 2.24
2560 3860 4.552767 GCATATTGACCATCGCACACTAAC 60.553 45.833 0.00 0.00 0.00 2.34
2561 3861 2.831685 TTGACCATCGCACACTAACT 57.168 45.000 0.00 0.00 0.00 2.24
2562 3862 2.831685 TGACCATCGCACACTAACTT 57.168 45.000 0.00 0.00 0.00 2.66
2563 3863 2.683968 TGACCATCGCACACTAACTTC 58.316 47.619 0.00 0.00 0.00 3.01
2564 3864 2.299013 TGACCATCGCACACTAACTTCT 59.701 45.455 0.00 0.00 0.00 2.85
2565 3865 3.508402 TGACCATCGCACACTAACTTCTA 59.492 43.478 0.00 0.00 0.00 2.10
2566 3866 4.021807 TGACCATCGCACACTAACTTCTAA 60.022 41.667 0.00 0.00 0.00 2.10
2567 3867 4.243270 ACCATCGCACACTAACTTCTAAC 58.757 43.478 0.00 0.00 0.00 2.34
2568 3868 4.021368 ACCATCGCACACTAACTTCTAACT 60.021 41.667 0.00 0.00 0.00 2.24
2569 3869 4.929808 CCATCGCACACTAACTTCTAACTT 59.070 41.667 0.00 0.00 0.00 2.66
2570 3870 6.097356 CCATCGCACACTAACTTCTAACTTA 58.903 40.000 0.00 0.00 0.00 2.24
2571 3871 6.588756 CCATCGCACACTAACTTCTAACTTAA 59.411 38.462 0.00 0.00 0.00 1.85
2572 3872 7.277981 CCATCGCACACTAACTTCTAACTTAAT 59.722 37.037 0.00 0.00 0.00 1.40
2573 3873 7.807687 TCGCACACTAACTTCTAACTTAATC 57.192 36.000 0.00 0.00 0.00 1.75
2574 3874 7.600065 TCGCACACTAACTTCTAACTTAATCT 58.400 34.615 0.00 0.00 0.00 2.40
2575 3875 8.733458 TCGCACACTAACTTCTAACTTAATCTA 58.267 33.333 0.00 0.00 0.00 1.98
2816 4116 4.141801 CCCTCCGTTCCATATTAGTTGTCA 60.142 45.833 0.00 0.00 0.00 3.58
2817 4117 5.050490 CCTCCGTTCCATATTAGTTGTCAG 58.950 45.833 0.00 0.00 0.00 3.51
2818 4118 4.439057 TCCGTTCCATATTAGTTGTCAGC 58.561 43.478 0.00 0.00 0.00 4.26
2819 4119 3.245284 CCGTTCCATATTAGTTGTCAGCG 59.755 47.826 0.00 0.00 0.00 5.18
2820 4120 4.109766 CGTTCCATATTAGTTGTCAGCGA 58.890 43.478 0.00 0.00 0.00 4.93
2821 4121 4.026804 CGTTCCATATTAGTTGTCAGCGAC 60.027 45.833 0.00 2.32 0.00 5.19
2822 4122 4.729227 TCCATATTAGTTGTCAGCGACA 57.271 40.909 7.20 7.20 41.09 4.35
2870 4192 8.053963 TGGAACGGAGGGATTATGTTTTTATAA 58.946 33.333 0.00 0.00 0.00 0.98
3122 4454 7.490840 TCATGGCAGTTAAAATTGTCCATATG 58.509 34.615 11.11 0.00 33.91 1.78
3455 4974 5.221126 GCCAAGAGAACAAGTGAGTGATTTT 60.221 40.000 0.00 0.00 0.00 1.82
3633 5152 7.396907 TCATGATTTGAATTCACCCTGTTATGT 59.603 33.333 7.89 0.00 0.00 2.29
3692 5313 4.574674 ATTGCCTGGTAAATCTGAGACA 57.425 40.909 0.16 0.00 0.00 3.41
3702 5323 7.323420 TGGTAAATCTGAGACATGACAGTTAG 58.677 38.462 0.00 0.00 35.84 2.34
3976 5597 6.638610 CATCAGTGTTCTAGGTTCAAGAGAT 58.361 40.000 0.00 0.00 0.00 2.75
4024 5645 1.798813 GCGCATCTTGGCATTGTTACC 60.799 52.381 0.30 0.00 0.00 2.85
4097 5718 7.177216 TCTGCTTTAGTTGATGAATTCCACAAT 59.823 33.333 14.36 0.00 0.00 2.71
4199 5823 1.338105 CGACTGAATCACCCAAGAGCA 60.338 52.381 0.00 0.00 0.00 4.26
4472 6260 9.599866 CTTGTACTGGAGATAAATGTTGTATCA 57.400 33.333 0.00 0.00 31.49 2.15
4700 6512 0.753479 TTGCCGGCTCAAAACAAGGA 60.753 50.000 29.70 0.00 0.00 3.36
4780 6592 8.614469 TTTTGGTTTTCTCTCATGTTTGTTTT 57.386 26.923 0.00 0.00 0.00 2.43
4791 6603 6.695278 TCTCATGTTTGTTTTCGGTTCATTTC 59.305 34.615 0.00 0.00 0.00 2.17
4795 6607 4.993029 TTGTTTTCGGTTCATTTCCTGT 57.007 36.364 0.00 0.00 0.00 4.00
4796 6608 4.300189 TGTTTTCGGTTCATTTCCTGTG 57.700 40.909 0.00 0.00 0.00 3.66
4799 6611 1.154225 CGGTTCATTTCCTGTGCGC 60.154 57.895 0.00 0.00 0.00 6.09
4813 6625 0.179205 GTGCGCATCTTGACAGAAGC 60.179 55.000 15.91 0.00 39.88 3.86
4853 6665 3.057174 CGATCAGCCCAAGAGTAGTATCC 60.057 52.174 0.00 0.00 0.00 2.59
4855 6667 3.719871 TCAGCCCAAGAGTAGTATCCAA 58.280 45.455 0.00 0.00 0.00 3.53
4856 6668 4.298626 TCAGCCCAAGAGTAGTATCCAAT 58.701 43.478 0.00 0.00 0.00 3.16
4857 6669 5.464069 TCAGCCCAAGAGTAGTATCCAATA 58.536 41.667 0.00 0.00 0.00 1.90
4858 6670 5.304614 TCAGCCCAAGAGTAGTATCCAATAC 59.695 44.000 0.00 0.00 35.99 1.89
4859 6671 5.070446 CAGCCCAAGAGTAGTATCCAATACA 59.930 44.000 0.39 0.00 38.21 2.29
4860 6672 5.665812 AGCCCAAGAGTAGTATCCAATACAA 59.334 40.000 0.39 0.00 38.21 2.41
4861 6673 5.992217 GCCCAAGAGTAGTATCCAATACAAG 59.008 44.000 0.39 0.00 38.21 3.16
4862 6674 6.183360 GCCCAAGAGTAGTATCCAATACAAGA 60.183 42.308 0.39 0.00 38.21 3.02
4863 6675 7.437748 CCCAAGAGTAGTATCCAATACAAGAG 58.562 42.308 0.39 0.00 38.21 2.85
4864 6676 7.070074 CCCAAGAGTAGTATCCAATACAAGAGT 59.930 40.741 0.39 0.00 38.21 3.24
4865 6677 9.132923 CCAAGAGTAGTATCCAATACAAGAGTA 57.867 37.037 0.39 0.00 38.21 2.59
4867 6679 9.924010 AAGAGTAGTATCCAATACAAGAGTAGT 57.076 33.333 0.39 0.00 38.21 2.73
4877 6689 8.258007 TCCAATACAAGAGTAGTATCAACCAAG 58.742 37.037 0.00 0.00 32.86 3.61
4894 6706 6.426937 TCAACCAAGTGTAGTATGAAGAAAGC 59.573 38.462 0.00 0.00 0.00 3.51
4926 6738 3.873812 CCCCTATCCACCGCCACC 61.874 72.222 0.00 0.00 0.00 4.61
4934 6746 3.220658 CACCGCCACCCCGTTTTT 61.221 61.111 0.00 0.00 0.00 1.94
4962 6774 7.696453 CCGTTTTTGTGCCTTTATATACTTCTG 59.304 37.037 0.00 0.00 0.00 3.02
5009 6821 1.587933 TTTTTCCACCGCCGCATACC 61.588 55.000 0.00 0.00 0.00 2.73
5011 6823 2.862674 TTTCCACCGCCGCATACCTC 62.863 60.000 0.00 0.00 0.00 3.85
5012 6824 3.849951 CCACCGCCGCATACCTCT 61.850 66.667 0.00 0.00 0.00 3.69
5014 6826 3.075005 ACCGCCGCATACCTCTGT 61.075 61.111 0.00 0.00 0.00 3.41
5015 6827 2.186903 CCGCCGCATACCTCTGTT 59.813 61.111 0.00 0.00 0.00 3.16
5016 6828 1.449601 CCGCCGCATACCTCTGTTT 60.450 57.895 0.00 0.00 0.00 2.83
5018 6830 1.752501 CGCCGCATACCTCTGTTTCG 61.753 60.000 0.00 0.00 0.00 3.46
5019 6831 0.739813 GCCGCATACCTCTGTTTCGT 60.740 55.000 0.00 0.00 0.00 3.85
5021 6833 1.403647 CCGCATACCTCTGTTTCGTGA 60.404 52.381 0.00 0.00 0.00 4.35
5022 6834 2.540515 CGCATACCTCTGTTTCGTGAT 58.459 47.619 0.00 0.00 0.00 3.06
5024 6836 3.262420 GCATACCTCTGTTTCGTGATGT 58.738 45.455 0.00 0.00 0.00 3.06
5025 6837 3.684788 GCATACCTCTGTTTCGTGATGTT 59.315 43.478 0.00 0.00 0.00 2.71
5026 6838 4.154195 GCATACCTCTGTTTCGTGATGTTT 59.846 41.667 0.00 0.00 0.00 2.83
5027 6839 5.671329 GCATACCTCTGTTTCGTGATGTTTC 60.671 44.000 0.00 0.00 0.00 2.78
5029 6841 4.389374 ACCTCTGTTTCGTGATGTTTCAT 58.611 39.130 0.00 0.00 33.56 2.57
5030 6842 4.214119 ACCTCTGTTTCGTGATGTTTCATG 59.786 41.667 0.00 0.00 39.77 3.07
5031 6843 4.452114 CCTCTGTTTCGTGATGTTTCATGA 59.548 41.667 0.00 0.00 44.34 3.07
5032 6844 5.342806 TCTGTTTCGTGATGTTTCATGAC 57.657 39.130 0.00 0.00 45.39 3.06
5033 6845 4.084589 TCTGTTTCGTGATGTTTCATGACG 60.085 41.667 13.56 13.56 45.39 4.35
5034 6846 3.804873 TGTTTCGTGATGTTTCATGACGA 59.195 39.130 17.10 17.10 45.39 4.20
5035 6847 4.450757 TGTTTCGTGATGTTTCATGACGAT 59.549 37.500 20.30 0.00 45.39 3.73
5036 6848 4.840401 TTCGTGATGTTTCATGACGATC 57.160 40.909 20.30 0.00 45.39 3.69
5037 6849 3.186909 TCGTGATGTTTCATGACGATCC 58.813 45.455 17.10 0.00 41.83 3.36
5038 6850 2.929398 CGTGATGTTTCATGACGATCCA 59.071 45.455 14.31 0.00 40.70 3.41
5041 6853 5.505286 GTGATGTTTCATGACGATCCAATC 58.495 41.667 0.00 0.00 33.56 2.67
5043 6855 2.935849 TGTTTCATGACGATCCAATCCG 59.064 45.455 0.00 0.00 0.00 4.18
5044 6856 3.194861 GTTTCATGACGATCCAATCCGA 58.805 45.455 0.00 0.00 0.00 4.55
5045 6857 3.535280 TTCATGACGATCCAATCCGAA 57.465 42.857 0.00 0.00 0.00 4.30
5047 6859 3.457234 TCATGACGATCCAATCCGAAAG 58.543 45.455 0.00 0.00 0.00 2.62
5048 6860 1.651987 TGACGATCCAATCCGAAAGC 58.348 50.000 0.00 0.00 0.00 3.51
5049 6861 0.938008 GACGATCCAATCCGAAAGCC 59.062 55.000 0.00 0.00 0.00 4.35
5050 6862 0.541863 ACGATCCAATCCGAAAGCCT 59.458 50.000 0.00 0.00 0.00 4.58
5051 6863 1.065418 ACGATCCAATCCGAAAGCCTT 60.065 47.619 0.00 0.00 0.00 4.35
5052 6864 2.017049 CGATCCAATCCGAAAGCCTTT 58.983 47.619 0.00 0.00 0.00 3.11
5053 6865 2.423538 CGATCCAATCCGAAAGCCTTTT 59.576 45.455 0.00 0.00 0.00 2.27
5054 6866 3.487544 CGATCCAATCCGAAAGCCTTTTC 60.488 47.826 0.00 0.00 39.44 2.29
5055 6867 2.167662 TCCAATCCGAAAGCCTTTTCC 58.832 47.619 0.00 0.00 39.63 3.13
5056 6868 1.135402 CCAATCCGAAAGCCTTTTCCG 60.135 52.381 0.00 0.00 39.63 4.30
5057 6869 0.526211 AATCCGAAAGCCTTTTCCGC 59.474 50.000 0.00 0.00 39.63 5.54
5058 6870 0.322546 ATCCGAAAGCCTTTTCCGCT 60.323 50.000 0.00 0.00 39.63 5.52
5059 6871 0.322322 TCCGAAAGCCTTTTCCGCTA 59.678 50.000 0.00 0.00 39.63 4.26
5060 6872 0.446616 CCGAAAGCCTTTTCCGCTAC 59.553 55.000 0.00 0.00 39.63 3.58
5061 6873 1.439679 CGAAAGCCTTTTCCGCTACT 58.560 50.000 0.00 0.00 39.63 2.57
5062 6874 1.393883 CGAAAGCCTTTTCCGCTACTC 59.606 52.381 0.00 0.00 39.63 2.59
5063 6875 2.701107 GAAAGCCTTTTCCGCTACTCT 58.299 47.619 0.00 0.00 37.34 3.24
5064 6876 2.100605 AAGCCTTTTCCGCTACTCTG 57.899 50.000 0.00 0.00 34.84 3.35
5065 6877 0.391793 AGCCTTTTCCGCTACTCTGC 60.392 55.000 0.00 0.00 33.91 4.26
5066 6878 1.369839 GCCTTTTCCGCTACTCTGCC 61.370 60.000 0.00 0.00 0.00 4.85
5067 6879 0.036388 CCTTTTCCGCTACTCTGCCA 60.036 55.000 0.00 0.00 0.00 4.92
5068 6880 1.363744 CTTTTCCGCTACTCTGCCAG 58.636 55.000 0.00 0.00 0.00 4.85
5069 6881 0.973632 TTTTCCGCTACTCTGCCAGA 59.026 50.000 0.00 0.00 0.00 3.86
5071 6883 1.323271 TTCCGCTACTCTGCCAGAGG 61.323 60.000 24.79 9.87 46.45 3.69
5072 6884 2.790791 CCGCTACTCTGCCAGAGGG 61.791 68.421 24.79 17.28 46.45 4.30
5073 6885 2.790791 CGCTACTCTGCCAGAGGGG 61.791 68.421 24.79 16.95 46.45 4.79
5074 6886 2.439104 GCTACTCTGCCAGAGGGGG 61.439 68.421 24.79 14.70 46.45 5.40
5075 6887 1.311403 CTACTCTGCCAGAGGGGGA 59.689 63.158 24.79 7.12 46.45 4.81
5076 6888 0.105246 CTACTCTGCCAGAGGGGGAT 60.105 60.000 24.79 6.83 46.45 3.85
5077 6889 0.343372 TACTCTGCCAGAGGGGGATT 59.657 55.000 24.79 6.12 46.45 3.01
5078 6890 0.985490 ACTCTGCCAGAGGGGGATTC 60.985 60.000 24.79 0.00 46.45 2.52
5079 6891 0.693767 CTCTGCCAGAGGGGGATTCT 60.694 60.000 14.14 0.00 38.67 2.40
5080 6892 0.253347 TCTGCCAGAGGGGGATTCTT 60.253 55.000 0.00 0.00 35.87 2.52
5081 6893 0.182299 CTGCCAGAGGGGGATTCTTC 59.818 60.000 0.00 0.00 35.87 2.87
5082 6894 0.549902 TGCCAGAGGGGGATTCTTCA 60.550 55.000 0.00 0.00 37.04 3.02
5083 6895 0.625849 GCCAGAGGGGGATTCTTCAA 59.374 55.000 0.00 0.00 37.04 2.69
5084 6896 1.216427 GCCAGAGGGGGATTCTTCAAT 59.784 52.381 0.00 0.00 37.04 2.57
5085 6897 2.941480 CCAGAGGGGGATTCTTCAATG 58.059 52.381 0.00 0.00 0.00 2.82
5086 6898 2.243221 CCAGAGGGGGATTCTTCAATGT 59.757 50.000 0.00 0.00 0.00 2.71
5087 6899 3.285484 CAGAGGGGGATTCTTCAATGTG 58.715 50.000 0.00 0.00 0.00 3.21
5088 6900 2.243221 AGAGGGGGATTCTTCAATGTGG 59.757 50.000 0.00 0.00 0.00 4.17
5089 6901 1.114627 GGGGGATTCTTCAATGTGGC 58.885 55.000 0.00 0.00 0.00 5.01
5090 6902 1.114627 GGGGATTCTTCAATGTGGCC 58.885 55.000 0.00 0.00 0.00 5.36
5091 6903 1.619432 GGGGATTCTTCAATGTGGCCA 60.619 52.381 0.00 0.00 0.00 5.36
5092 6904 2.391678 GGGATTCTTCAATGTGGCCAT 58.608 47.619 9.72 0.00 0.00 4.40
5093 6905 2.767960 GGGATTCTTCAATGTGGCCATT 59.232 45.455 9.72 0.00 42.03 3.16
5094 6906 3.198417 GGGATTCTTCAATGTGGCCATTT 59.802 43.478 9.72 2.83 39.28 2.32
5095 6907 4.323715 GGGATTCTTCAATGTGGCCATTTT 60.324 41.667 9.72 2.39 39.28 1.82
5096 6908 4.872124 GGATTCTTCAATGTGGCCATTTTC 59.128 41.667 9.72 0.00 39.28 2.29
5097 6909 4.952071 TTCTTCAATGTGGCCATTTTCA 57.048 36.364 9.72 1.34 39.28 2.69
5098 6910 5.486735 TTCTTCAATGTGGCCATTTTCAT 57.513 34.783 9.72 4.38 39.28 2.57
5099 6911 5.075858 TCTTCAATGTGGCCATTTTCATC 57.924 39.130 9.72 0.00 39.28 2.92
5100 6912 4.527427 TCTTCAATGTGGCCATTTTCATCA 59.473 37.500 9.72 0.00 39.28 3.07
5101 6913 4.886496 TCAATGTGGCCATTTTCATCAA 57.114 36.364 9.72 0.00 39.28 2.57
5102 6914 4.567971 TCAATGTGGCCATTTTCATCAAC 58.432 39.130 9.72 0.00 39.28 3.18
5103 6915 4.283978 TCAATGTGGCCATTTTCATCAACT 59.716 37.500 9.72 0.00 39.28 3.16
5104 6916 4.895668 ATGTGGCCATTTTCATCAACTT 57.104 36.364 9.72 0.00 0.00 2.66
5105 6917 5.999205 ATGTGGCCATTTTCATCAACTTA 57.001 34.783 9.72 0.00 0.00 2.24
5106 6918 5.798125 TGTGGCCATTTTCATCAACTTAA 57.202 34.783 9.72 0.00 0.00 1.85
5107 6919 5.782047 TGTGGCCATTTTCATCAACTTAAG 58.218 37.500 9.72 0.00 0.00 1.85
5108 6920 5.170748 GTGGCCATTTTCATCAACTTAAGG 58.829 41.667 9.72 0.00 0.00 2.69
5109 6921 4.183865 GGCCATTTTCATCAACTTAAGGC 58.816 43.478 7.53 0.00 37.69 4.35
5110 6922 4.183865 GCCATTTTCATCAACTTAAGGCC 58.816 43.478 7.53 0.00 32.50 5.19
5111 6923 4.322650 GCCATTTTCATCAACTTAAGGCCA 60.323 41.667 5.01 0.00 32.50 5.36
5112 6924 5.627503 GCCATTTTCATCAACTTAAGGCCAT 60.628 40.000 5.01 0.00 32.50 4.40
5113 6925 6.044682 CCATTTTCATCAACTTAAGGCCATC 58.955 40.000 5.01 0.00 0.00 3.51
5114 6926 6.351202 CCATTTTCATCAACTTAAGGCCATCA 60.351 38.462 5.01 0.00 0.00 3.07
5115 6927 6.855763 TTTTCATCAACTTAAGGCCATCAT 57.144 33.333 5.01 0.00 0.00 2.45
5116 6928 5.840243 TTCATCAACTTAAGGCCATCATG 57.160 39.130 5.01 0.00 0.00 3.07
5117 6929 5.114764 TCATCAACTTAAGGCCATCATGA 57.885 39.130 5.01 0.00 0.00 3.07
5118 6930 5.698104 TCATCAACTTAAGGCCATCATGAT 58.302 37.500 5.01 1.18 0.00 2.45
5135 6947 5.237815 TCATGATCGCTTGTGAGTAGTTTT 58.762 37.500 0.00 0.00 0.00 2.43
5136 6948 5.348724 TCATGATCGCTTGTGAGTAGTTTTC 59.651 40.000 0.00 0.00 0.00 2.29
5138 6950 5.297547 TGATCGCTTGTGAGTAGTTTTCTT 58.702 37.500 0.00 0.00 0.00 2.52
5153 6965 4.354087 AGTTTTCTTTGGGACTATGGGTCT 59.646 41.667 0.00 0.00 43.97 3.85
5154 6966 4.301072 TTTCTTTGGGACTATGGGTCTG 57.699 45.455 0.00 0.00 43.97 3.51
5164 6976 2.959707 ACTATGGGTCTGTAGCAGTAGC 59.040 50.000 0.00 0.00 42.56 3.58
5212 7024 5.819379 TCTCAATACAAAGATCACATGAGCC 59.181 40.000 0.00 0.00 34.51 4.70
5217 7029 0.538584 AAGATCACATGAGCCGCTCA 59.461 50.000 24.90 24.90 44.99 4.26
5294 7106 6.808212 GGGTTGTGATCAATTGTCACTTTATG 59.192 38.462 26.73 0.00 44.80 1.90
5297 7109 9.282247 GTTGTGATCAATTGTCACTTTATGATC 57.718 33.333 26.73 13.14 44.80 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 146 1.153086 GGCTGCCCTCGTTGATGAT 60.153 57.895 7.66 0.00 0.00 2.45
157 161 3.933542 AAGAAGGAGAGGGGCGGCT 62.934 63.158 9.56 0.00 0.00 5.52
374 382 4.813526 CGTCGTCGCTGTCGAGGG 62.814 72.222 11.88 0.00 46.46 4.30
464 472 0.322816 ATCGCCTTTGTCCTGCATGT 60.323 50.000 0.00 0.00 0.00 3.21
467 475 0.035152 ATCATCGCCTTTGTCCTGCA 60.035 50.000 0.00 0.00 0.00 4.41
477 485 3.527427 TCGCCGTCATCATCGCCT 61.527 61.111 0.00 0.00 0.00 5.52
523 547 1.069765 CCGCCTTCTACATGCCGAT 59.930 57.895 0.00 0.00 0.00 4.18
558 582 0.387929 TACGCCTAGCACCACTATGC 59.612 55.000 0.00 0.00 46.50 3.14
559 583 1.681793 ACTACGCCTAGCACCACTATG 59.318 52.381 0.00 0.00 0.00 2.23
560 584 2.068834 ACTACGCCTAGCACCACTAT 57.931 50.000 0.00 0.00 0.00 2.12
561 585 1.475280 CAACTACGCCTAGCACCACTA 59.525 52.381 0.00 0.00 0.00 2.74
562 586 0.246635 CAACTACGCCTAGCACCACT 59.753 55.000 0.00 0.00 0.00 4.00
563 587 0.037605 ACAACTACGCCTAGCACCAC 60.038 55.000 0.00 0.00 0.00 4.16
564 588 0.245539 GACAACTACGCCTAGCACCA 59.754 55.000 0.00 0.00 0.00 4.17
565 589 0.801067 CGACAACTACGCCTAGCACC 60.801 60.000 0.00 0.00 0.00 5.01
627 660 9.489084 CGTCCAACCTAGATAATTTCATTGATA 57.511 33.333 0.00 0.00 0.00 2.15
628 661 8.210946 TCGTCCAACCTAGATAATTTCATTGAT 58.789 33.333 0.00 0.00 0.00 2.57
629 662 7.561251 TCGTCCAACCTAGATAATTTCATTGA 58.439 34.615 0.00 0.00 0.00 2.57
630 663 7.786178 TCGTCCAACCTAGATAATTTCATTG 57.214 36.000 0.00 0.00 0.00 2.82
631 664 8.801882 TTTCGTCCAACCTAGATAATTTCATT 57.198 30.769 0.00 0.00 0.00 2.57
632 665 8.980481 ATTTCGTCCAACCTAGATAATTTCAT 57.020 30.769 0.00 0.00 0.00 2.57
633 666 8.673711 CAATTTCGTCCAACCTAGATAATTTCA 58.326 33.333 0.00 0.00 0.00 2.69
634 667 8.674607 ACAATTTCGTCCAACCTAGATAATTTC 58.325 33.333 0.00 0.00 0.00 2.17
635 668 8.458843 CACAATTTCGTCCAACCTAGATAATTT 58.541 33.333 0.00 0.00 0.00 1.82
636 669 7.610305 ACACAATTTCGTCCAACCTAGATAATT 59.390 33.333 0.00 0.00 0.00 1.40
637 670 7.110155 ACACAATTTCGTCCAACCTAGATAAT 58.890 34.615 0.00 0.00 0.00 1.28
638 671 6.469410 ACACAATTTCGTCCAACCTAGATAA 58.531 36.000 0.00 0.00 0.00 1.75
639 672 6.045072 ACACAATTTCGTCCAACCTAGATA 57.955 37.500 0.00 0.00 0.00 1.98
640 673 4.906618 ACACAATTTCGTCCAACCTAGAT 58.093 39.130 0.00 0.00 0.00 1.98
641 674 4.312443 GACACAATTTCGTCCAACCTAGA 58.688 43.478 0.00 0.00 0.00 2.43
642 675 3.122948 CGACACAATTTCGTCCAACCTAG 59.877 47.826 0.00 0.00 0.00 3.02
643 676 3.061322 CGACACAATTTCGTCCAACCTA 58.939 45.455 0.00 0.00 0.00 3.08
644 677 1.871039 CGACACAATTTCGTCCAACCT 59.129 47.619 0.00 0.00 0.00 3.50
645 678 1.600485 ACGACACAATTTCGTCCAACC 59.400 47.619 0.00 0.00 46.61 3.77
646 679 2.031191 ACACGACACAATTTCGTCCAAC 59.969 45.455 0.76 0.00 46.61 3.77
647 680 2.281517 ACACGACACAATTTCGTCCAA 58.718 42.857 0.76 0.00 46.61 3.53
648 681 1.942677 ACACGACACAATTTCGTCCA 58.057 45.000 0.76 0.00 46.61 4.02
649 682 3.033185 CAAACACGACACAATTTCGTCC 58.967 45.455 0.76 0.00 46.61 4.79
650 683 3.717404 GTCAAACACGACACAATTTCGTC 59.283 43.478 0.76 0.00 46.61 4.20
652 685 3.033185 GGTCAAACACGACACAATTTCG 58.967 45.455 0.00 0.00 42.36 3.46
653 686 3.033185 CGGTCAAACACGACACAATTTC 58.967 45.455 0.00 0.00 37.66 2.17
654 687 2.678836 TCGGTCAAACACGACACAATTT 59.321 40.909 0.00 0.00 37.66 1.82
655 688 2.281517 TCGGTCAAACACGACACAATT 58.718 42.857 0.00 0.00 37.66 2.32
656 689 1.942677 TCGGTCAAACACGACACAAT 58.057 45.000 0.00 0.00 37.66 2.71
657 690 1.942677 ATCGGTCAAACACGACACAA 58.057 45.000 0.00 0.00 42.39 3.33
658 691 1.942677 AATCGGTCAAACACGACACA 58.057 45.000 0.00 0.00 42.39 3.72
659 692 3.001939 AGAAAATCGGTCAAACACGACAC 59.998 43.478 0.00 0.00 42.39 3.67
660 693 3.001838 CAGAAAATCGGTCAAACACGACA 59.998 43.478 0.00 0.00 42.39 4.35
661 694 3.001939 ACAGAAAATCGGTCAAACACGAC 59.998 43.478 0.00 0.00 42.39 4.34
662 695 3.199677 ACAGAAAATCGGTCAAACACGA 58.800 40.909 0.00 0.00 43.85 4.35
663 696 3.602390 ACAGAAAATCGGTCAAACACG 57.398 42.857 0.00 0.00 0.00 4.49
664 697 5.336744 TGAAACAGAAAATCGGTCAAACAC 58.663 37.500 0.00 0.00 0.00 3.32
665 698 5.568685 TGAAACAGAAAATCGGTCAAACA 57.431 34.783 0.00 0.00 0.00 2.83
666 699 6.879188 TTTGAAACAGAAAATCGGTCAAAC 57.121 33.333 0.00 0.00 0.00 2.93
667 700 7.891183 TTTTTGAAACAGAAAATCGGTCAAA 57.109 28.000 0.00 0.00 0.00 2.69
668 701 8.125728 GATTTTTGAAACAGAAAATCGGTCAA 57.874 30.769 5.98 0.00 40.39 3.18
669 702 7.692908 GATTTTTGAAACAGAAAATCGGTCA 57.307 32.000 5.98 0.00 40.39 4.02
674 707 9.185192 AGATGACGATTTTTGAAACAGAAAATC 57.815 29.630 10.10 10.10 43.63 2.17
675 708 8.971321 CAGATGACGATTTTTGAAACAGAAAAT 58.029 29.630 0.00 0.00 37.96 1.82
676 709 7.434897 CCAGATGACGATTTTTGAAACAGAAAA 59.565 33.333 0.00 0.00 0.00 2.29
677 710 6.917477 CCAGATGACGATTTTTGAAACAGAAA 59.083 34.615 0.00 0.00 0.00 2.52
678 711 6.437928 CCAGATGACGATTTTTGAAACAGAA 58.562 36.000 0.00 0.00 0.00 3.02
679 712 5.048782 CCCAGATGACGATTTTTGAAACAGA 60.049 40.000 0.00 0.00 0.00 3.41
680 713 5.156355 CCCAGATGACGATTTTTGAAACAG 58.844 41.667 0.00 0.00 0.00 3.16
681 714 4.022416 CCCCAGATGACGATTTTTGAAACA 60.022 41.667 0.00 0.00 0.00 2.83
682 715 4.217550 TCCCCAGATGACGATTTTTGAAAC 59.782 41.667 0.00 0.00 0.00 2.78
683 716 4.402829 TCCCCAGATGACGATTTTTGAAA 58.597 39.130 0.00 0.00 0.00 2.69
684 717 4.027674 TCCCCAGATGACGATTTTTGAA 57.972 40.909 0.00 0.00 0.00 2.69
685 718 3.712016 TCCCCAGATGACGATTTTTGA 57.288 42.857 0.00 0.00 0.00 2.69
697 730 1.050988 CCCTCACGTCATCCCCAGAT 61.051 60.000 0.00 0.00 0.00 2.90
698 731 1.685765 CCCTCACGTCATCCCCAGA 60.686 63.158 0.00 0.00 0.00 3.86
699 732 2.903357 CCCTCACGTCATCCCCAG 59.097 66.667 0.00 0.00 0.00 4.45
700 733 3.399181 GCCCTCACGTCATCCCCA 61.399 66.667 0.00 0.00 0.00 4.96
701 734 4.530857 CGCCCTCACGTCATCCCC 62.531 72.222 0.00 0.00 0.00 4.81
702 735 4.530857 CCGCCCTCACGTCATCCC 62.531 72.222 0.00 0.00 0.00 3.85
703 736 3.771160 ACCGCCCTCACGTCATCC 61.771 66.667 0.00 0.00 0.00 3.51
704 737 2.509336 CACCGCCCTCACGTCATC 60.509 66.667 0.00 0.00 0.00 2.92
705 738 4.082523 CCACCGCCCTCACGTCAT 62.083 66.667 0.00 0.00 0.00 3.06
710 743 3.842925 TTTCAGCCACCGCCCTCAC 62.843 63.158 0.00 0.00 34.57 3.51
711 744 2.632602 TTTTTCAGCCACCGCCCTCA 62.633 55.000 0.00 0.00 34.57 3.86
712 745 1.901464 TTTTTCAGCCACCGCCCTC 60.901 57.895 0.00 0.00 34.57 4.30
713 746 2.197324 TTTTTCAGCCACCGCCCT 59.803 55.556 0.00 0.00 34.57 5.19
714 747 2.338620 GTTTTTCAGCCACCGCCC 59.661 61.111 0.00 0.00 34.57 6.13
715 748 0.891904 TAGGTTTTTCAGCCACCGCC 60.892 55.000 0.00 0.00 35.54 6.13
716 749 0.240145 GTAGGTTTTTCAGCCACCGC 59.760 55.000 0.00 0.00 35.54 5.68
717 750 0.879090 GGTAGGTTTTTCAGCCACCG 59.121 55.000 0.00 0.00 35.54 4.94
718 751 0.879090 CGGTAGGTTTTTCAGCCACC 59.121 55.000 0.00 0.00 0.00 4.61
719 752 0.240145 GCGGTAGGTTTTTCAGCCAC 59.760 55.000 0.00 0.00 0.00 5.01
720 753 0.891904 GGCGGTAGGTTTTTCAGCCA 60.892 55.000 0.00 0.00 40.89 4.75
721 754 1.592400 GGGCGGTAGGTTTTTCAGCC 61.592 60.000 0.00 0.00 40.59 4.85
722 755 1.592400 GGGGCGGTAGGTTTTTCAGC 61.592 60.000 0.00 0.00 0.00 4.26
723 756 1.303091 CGGGGCGGTAGGTTTTTCAG 61.303 60.000 0.00 0.00 0.00 3.02
724 757 1.302671 CGGGGCGGTAGGTTTTTCA 60.303 57.895 0.00 0.00 0.00 2.69
725 758 2.693762 GCGGGGCGGTAGGTTTTTC 61.694 63.158 0.00 0.00 0.00 2.29
726 759 2.674033 GCGGGGCGGTAGGTTTTT 60.674 61.111 0.00 0.00 0.00 1.94
727 760 4.728110 GGCGGGGCGGTAGGTTTT 62.728 66.667 0.00 0.00 0.00 2.43
743 776 4.831307 CGTCTCGAGGCGAACCGG 62.831 72.222 34.61 2.82 42.76 5.28
744 777 4.831307 CCGTCTCGAGGCGAACCG 62.831 72.222 38.74 19.41 42.76 4.44
751 784 2.837371 GAAACAGGGCCGTCTCGAGG 62.837 65.000 13.56 0.00 0.00 4.63
752 785 1.446272 GAAACAGGGCCGTCTCGAG 60.446 63.158 5.93 5.93 0.00 4.04
753 786 1.750341 TTGAAACAGGGCCGTCTCGA 61.750 55.000 0.00 0.00 0.00 4.04
754 787 1.291877 CTTGAAACAGGGCCGTCTCG 61.292 60.000 0.00 0.00 0.00 4.04
755 788 1.578206 GCTTGAAACAGGGCCGTCTC 61.578 60.000 0.00 0.00 0.00 3.36
756 789 1.600916 GCTTGAAACAGGGCCGTCT 60.601 57.895 0.00 0.00 0.00 4.18
757 790 2.626780 GGCTTGAAACAGGGCCGTC 61.627 63.158 0.00 0.00 35.08 4.79
758 791 2.597510 GGCTTGAAACAGGGCCGT 60.598 61.111 0.00 0.00 35.08 5.68
759 792 3.373565 GGGCTTGAAACAGGGCCG 61.374 66.667 10.20 0.00 44.98 6.13
761 794 2.597510 ACGGGCTTGAAACAGGGC 60.598 61.111 0.00 0.00 35.41 5.19
762 795 2.268076 CCACGGGCTTGAAACAGGG 61.268 63.158 0.00 0.00 0.00 4.45
763 796 2.268076 CCCACGGGCTTGAAACAGG 61.268 63.158 0.00 0.00 0.00 4.00
764 797 2.268076 CCCCACGGGCTTGAAACAG 61.268 63.158 0.00 0.00 35.35 3.16
765 798 2.203422 CCCCACGGGCTTGAAACA 60.203 61.111 0.00 0.00 35.35 2.83
766 799 2.989253 CCCCCACGGGCTTGAAAC 60.989 66.667 0.00 0.00 44.50 2.78
801 834 2.099921 CTCCATCCACCACGAGTTAGAG 59.900 54.545 0.00 0.00 0.00 2.43
824 857 2.047560 CAACGAAGTCCGGGACCC 60.048 66.667 23.21 14.31 45.00 4.46
872 908 1.375326 GGGGACGGAAGAACTTGCT 59.625 57.895 4.75 0.00 0.00 3.91
972 1862 1.988406 GGGAAGGAGTAGCGGTGGT 60.988 63.158 0.00 0.00 0.00 4.16
1069 1959 0.179006 GGGGAGGGCTTGATGATGTC 60.179 60.000 0.00 0.00 0.00 3.06
1333 2226 2.233654 GCGGCAGATCAGCACGTAG 61.234 63.158 12.54 0.00 35.87 3.51
1348 2242 2.489329 ACCATCATCAAAACAAGAGCGG 59.511 45.455 0.00 0.00 0.00 5.52
1490 2384 1.363885 TGAGCATCAGCGTCACATGC 61.364 55.000 0.00 0.00 42.56 4.06
1509 2403 1.139989 CGACAGACGAATGCACAAGT 58.860 50.000 0.00 0.00 45.77 3.16
1543 2437 4.022589 ACACATTGTGGAGATTTTGAGCTG 60.023 41.667 20.33 0.00 37.94 4.24
1641 2551 0.963962 GAAGTACCGGACTCACACCA 59.036 55.000 9.46 0.00 37.44 4.17
1643 2553 0.595095 ACGAAGTACCGGACTCACAC 59.405 55.000 9.46 0.00 41.94 3.82
1697 2607 7.072177 TGGTCGAATCAATCAGAATTTACAC 57.928 36.000 0.00 0.00 0.00 2.90
1761 2671 8.924303 AGGCATCATTGTATGTTACTAGAAGTA 58.076 33.333 0.00 0.00 0.00 2.24
1909 2820 8.977505 CCCAACAACTGAAATAAACTTAACATG 58.022 33.333 0.00 0.00 0.00 3.21
2207 3122 5.465056 GTCAGATCTCAAAACTAGGCTATGC 59.535 44.000 0.00 0.00 0.00 3.14
2397 3687 1.230635 TGCTTTGGAGAGTCAAGCGC 61.231 55.000 0.00 0.00 0.00 5.92
2563 3863 8.815189 GCGTTTTAGGTTCCTAGATTAAGTTAG 58.185 37.037 0.00 0.00 0.00 2.34
2564 3864 8.313292 TGCGTTTTAGGTTCCTAGATTAAGTTA 58.687 33.333 0.00 0.00 0.00 2.24
2565 3865 7.163441 TGCGTTTTAGGTTCCTAGATTAAGTT 58.837 34.615 0.00 0.00 0.00 2.66
2566 3866 6.704310 TGCGTTTTAGGTTCCTAGATTAAGT 58.296 36.000 0.00 0.00 0.00 2.24
2567 3867 7.787725 ATGCGTTTTAGGTTCCTAGATTAAG 57.212 36.000 0.00 0.00 0.00 1.85
2568 3868 8.570068 AAATGCGTTTTAGGTTCCTAGATTAA 57.430 30.769 0.00 0.00 0.00 1.40
2569 3869 8.570068 AAAATGCGTTTTAGGTTCCTAGATTA 57.430 30.769 14.95 0.00 35.83 1.75
2570 3870 7.462571 AAAATGCGTTTTAGGTTCCTAGATT 57.537 32.000 14.95 0.00 35.83 2.40
2571 3871 7.608761 TGTAAAATGCGTTTTAGGTTCCTAGAT 59.391 33.333 21.36 0.00 39.69 1.98
2572 3872 6.935771 TGTAAAATGCGTTTTAGGTTCCTAGA 59.064 34.615 21.36 0.00 39.69 2.43
2573 3873 7.136289 TGTAAAATGCGTTTTAGGTTCCTAG 57.864 36.000 21.36 0.00 39.69 3.02
2574 3874 7.013083 TGTTGTAAAATGCGTTTTAGGTTCCTA 59.987 33.333 21.36 6.46 39.69 2.94
2575 3875 6.183360 TGTTGTAAAATGCGTTTTAGGTTCCT 60.183 34.615 21.36 0.00 39.69 3.36
2816 4116 0.921347 GTCGCATATTCGTTGTCGCT 59.079 50.000 0.00 0.00 36.96 4.93
2817 4117 0.643310 TGTCGCATATTCGTTGTCGC 59.357 50.000 0.00 0.00 36.96 5.19
2818 4118 2.344441 AGTTGTCGCATATTCGTTGTCG 59.656 45.455 0.00 0.00 38.55 4.35
2819 4119 3.991605 AGTTGTCGCATATTCGTTGTC 57.008 42.857 0.00 0.00 0.00 3.18
2820 4120 7.307160 CCATATTAGTTGTCGCATATTCGTTGT 60.307 37.037 0.00 0.00 0.00 3.32
2821 4121 7.009440 CCATATTAGTTGTCGCATATTCGTTG 58.991 38.462 0.00 0.00 0.00 4.10
2822 4122 6.926826 TCCATATTAGTTGTCGCATATTCGTT 59.073 34.615 0.00 0.00 0.00 3.85
2823 4123 6.452242 TCCATATTAGTTGTCGCATATTCGT 58.548 36.000 0.00 0.00 0.00 3.85
2825 4125 7.227461 CGTTCCATATTAGTTGTCGCATATTC 58.773 38.462 0.00 0.00 0.00 1.75
2826 4126 6.147164 CCGTTCCATATTAGTTGTCGCATATT 59.853 38.462 0.00 0.00 0.00 1.28
2827 4127 5.637810 CCGTTCCATATTAGTTGTCGCATAT 59.362 40.000 0.00 0.00 0.00 1.78
2829 4129 3.807622 CCGTTCCATATTAGTTGTCGCAT 59.192 43.478 0.00 0.00 0.00 4.73
2870 4192 9.838339 AGCTAAATAATGTACAGCACTAGAATT 57.162 29.630 0.33 0.00 34.65 2.17
3150 4667 2.100749 TGTCCATCCTATACAGCACACG 59.899 50.000 0.00 0.00 0.00 4.49
3692 5313 5.426833 AGAAGCAGGGTATTCTAACTGTCAT 59.573 40.000 0.00 0.00 34.04 3.06
3702 5323 4.755266 TCACCTAAGAAGCAGGGTATTC 57.245 45.455 0.00 0.00 37.51 1.75
3976 5597 3.671008 ACTGTTACAACCACTCGCATA 57.329 42.857 0.00 0.00 0.00 3.14
4024 5645 6.602179 TGAATCTTGAGAAAACGCTAATGTG 58.398 36.000 0.00 0.00 0.00 3.21
4097 5718 5.518848 ACAACAACAATGAGAGATTGCAA 57.481 34.783 0.00 0.00 32.55 4.08
4199 5823 6.947733 TCAAGATCTGAAACCAACATACCATT 59.052 34.615 0.00 0.00 0.00 3.16
4472 6260 3.550437 AAATTGCTCTAGCTCCGACAT 57.450 42.857 3.26 0.00 42.66 3.06
4700 6512 2.445905 AGATCATGGAGCCAATGGATGT 59.554 45.455 2.05 0.00 0.00 3.06
4743 6555 6.043127 AGAGAAAACCAAAATGCAAAGGGTAT 59.957 34.615 0.00 0.00 0.00 2.73
4744 6556 5.365314 AGAGAAAACCAAAATGCAAAGGGTA 59.635 36.000 0.00 0.00 0.00 3.69
4780 6592 1.573829 GCGCACAGGAAATGAACCGA 61.574 55.000 0.30 0.00 0.00 4.69
4791 6603 0.671472 TCTGTCAAGATGCGCACAGG 60.671 55.000 14.90 2.49 37.46 4.00
4795 6607 2.165380 GCTTCTGTCAAGATGCGCA 58.835 52.632 14.96 14.96 41.92 6.09
4799 6611 4.473199 CACACAATGCTTCTGTCAAGATG 58.527 43.478 0.00 0.00 30.72 2.90
4813 6625 2.287769 TCGTATCCATGCCACACAATG 58.712 47.619 0.00 0.00 0.00 2.82
4853 6665 8.873830 CACTTGGTTGATACTACTCTTGTATTG 58.126 37.037 0.00 0.00 31.55 1.90
4855 6667 8.135382 ACACTTGGTTGATACTACTCTTGTAT 57.865 34.615 0.00 0.00 33.79 2.29
4856 6668 7.534723 ACACTTGGTTGATACTACTCTTGTA 57.465 36.000 0.00 0.00 0.00 2.41
4857 6669 6.420913 ACACTTGGTTGATACTACTCTTGT 57.579 37.500 0.00 0.00 0.00 3.16
4858 6670 7.603651 ACTACACTTGGTTGATACTACTCTTG 58.396 38.462 0.00 0.00 0.00 3.02
4859 6671 7.778185 ACTACACTTGGTTGATACTACTCTT 57.222 36.000 0.00 0.00 0.00 2.85
4860 6672 8.904834 CATACTACACTTGGTTGATACTACTCT 58.095 37.037 0.00 0.00 0.00 3.24
4861 6673 8.900781 TCATACTACACTTGGTTGATACTACTC 58.099 37.037 0.00 0.00 0.00 2.59
4862 6674 8.818622 TCATACTACACTTGGTTGATACTACT 57.181 34.615 0.00 0.00 0.00 2.57
4863 6675 9.517609 CTTCATACTACACTTGGTTGATACTAC 57.482 37.037 0.00 0.00 0.00 2.73
4864 6676 9.470399 TCTTCATACTACACTTGGTTGATACTA 57.530 33.333 0.00 0.00 0.00 1.82
4865 6677 8.362464 TCTTCATACTACACTTGGTTGATACT 57.638 34.615 0.00 0.00 0.00 2.12
4866 6678 8.997621 TTCTTCATACTACACTTGGTTGATAC 57.002 34.615 0.00 0.00 0.00 2.24
4867 6679 9.653287 CTTTCTTCATACTACACTTGGTTGATA 57.347 33.333 0.00 0.00 0.00 2.15
4868 6680 7.119846 GCTTTCTTCATACTACACTTGGTTGAT 59.880 37.037 0.00 0.00 0.00 2.57
4869 6681 6.426937 GCTTTCTTCATACTACACTTGGTTGA 59.573 38.462 0.00 0.00 0.00 3.18
4870 6682 6.603095 GCTTTCTTCATACTACACTTGGTTG 58.397 40.000 0.00 0.00 0.00 3.77
4871 6683 5.408604 CGCTTTCTTCATACTACACTTGGTT 59.591 40.000 0.00 0.00 0.00 3.67
4872 6684 4.929808 CGCTTTCTTCATACTACACTTGGT 59.070 41.667 0.00 0.00 0.00 3.67
4877 6689 2.281762 CGGCGCTTTCTTCATACTACAC 59.718 50.000 7.64 0.00 0.00 2.90
4894 6706 0.608640 AGGGGCTATTAGATTCGGCG 59.391 55.000 0.00 0.00 0.00 6.46
4934 6746 7.690952 AGTATATAAAGGCACAAAAACGGAA 57.309 32.000 0.00 0.00 0.00 4.30
4962 6774 7.840931 AGGATGATAAATTCACAAAGGGTTTC 58.159 34.615 0.00 0.00 37.11 2.78
5009 6821 5.377358 GTCATGAAACATCACGAAACAGAG 58.623 41.667 0.00 0.00 0.00 3.35
5011 6823 4.084589 TCGTCATGAAACATCACGAAACAG 60.085 41.667 8.21 0.00 36.59 3.16
5012 6824 3.804873 TCGTCATGAAACATCACGAAACA 59.195 39.130 8.21 0.00 36.59 2.83
5014 6826 4.092821 GGATCGTCATGAAACATCACGAAA 59.907 41.667 13.70 0.00 42.34 3.46
5015 6827 3.616821 GGATCGTCATGAAACATCACGAA 59.383 43.478 13.70 0.28 42.34 3.85
5016 6828 3.186909 GGATCGTCATGAAACATCACGA 58.813 45.455 12.36 12.36 43.15 4.35
5018 6830 4.944962 TTGGATCGTCATGAAACATCAC 57.055 40.909 0.00 0.00 0.00 3.06
5019 6831 4.576053 GGATTGGATCGTCATGAAACATCA 59.424 41.667 0.00 0.00 0.00 3.07
5021 6833 3.561310 CGGATTGGATCGTCATGAAACAT 59.439 43.478 0.00 0.00 0.00 2.71
5022 6834 2.935849 CGGATTGGATCGTCATGAAACA 59.064 45.455 0.00 0.00 0.00 2.83
5024 6836 3.535280 TCGGATTGGATCGTCATGAAA 57.465 42.857 0.00 0.00 0.00 2.69
5025 6837 3.535280 TTCGGATTGGATCGTCATGAA 57.465 42.857 0.00 0.00 0.00 2.57
5026 6838 3.457234 CTTTCGGATTGGATCGTCATGA 58.543 45.455 0.00 0.00 0.00 3.07
5027 6839 2.032549 GCTTTCGGATTGGATCGTCATG 60.033 50.000 0.00 0.00 0.00 3.07
5029 6841 1.651987 GCTTTCGGATTGGATCGTCA 58.348 50.000 0.00 0.00 0.00 4.35
5030 6842 0.938008 GGCTTTCGGATTGGATCGTC 59.062 55.000 0.00 0.00 0.00 4.20
5031 6843 0.541863 AGGCTTTCGGATTGGATCGT 59.458 50.000 0.00 0.00 0.00 3.73
5032 6844 1.668419 AAGGCTTTCGGATTGGATCG 58.332 50.000 0.00 0.00 0.00 3.69
5033 6845 3.181486 GGAAAAGGCTTTCGGATTGGATC 60.181 47.826 13.76 3.55 41.70 3.36
5034 6846 2.760650 GGAAAAGGCTTTCGGATTGGAT 59.239 45.455 13.76 0.00 41.70 3.41
5035 6847 2.167662 GGAAAAGGCTTTCGGATTGGA 58.832 47.619 13.76 0.00 41.70 3.53
5036 6848 1.135402 CGGAAAAGGCTTTCGGATTGG 60.135 52.381 13.76 0.00 41.86 3.16
5037 6849 1.732405 GCGGAAAAGGCTTTCGGATTG 60.732 52.381 13.76 2.03 41.86 2.67
5038 6850 0.526211 GCGGAAAAGGCTTTCGGATT 59.474 50.000 13.76 0.00 41.86 3.01
5041 6853 0.446616 GTAGCGGAAAAGGCTTTCGG 59.553 55.000 13.76 11.64 41.70 4.30
5043 6855 2.416893 CAGAGTAGCGGAAAAGGCTTTC 59.583 50.000 13.76 6.89 41.80 2.62
5044 6856 2.427506 CAGAGTAGCGGAAAAGGCTTT 58.572 47.619 6.68 6.68 41.80 3.51
5045 6857 1.946283 GCAGAGTAGCGGAAAAGGCTT 60.946 52.381 0.00 0.00 41.80 4.35
5047 6859 1.369839 GGCAGAGTAGCGGAAAAGGC 61.370 60.000 0.00 0.00 34.64 4.35
5048 6860 0.036388 TGGCAGAGTAGCGGAAAAGG 60.036 55.000 0.00 0.00 34.64 3.11
5049 6861 1.066858 TCTGGCAGAGTAGCGGAAAAG 60.067 52.381 14.43 0.00 34.64 2.27
5050 6862 0.973632 TCTGGCAGAGTAGCGGAAAA 59.026 50.000 14.43 0.00 34.64 2.29
5051 6863 0.532573 CTCTGGCAGAGTAGCGGAAA 59.467 55.000 31.73 0.68 37.57 3.13
5052 6864 1.323271 CCTCTGGCAGAGTAGCGGAA 61.323 60.000 35.40 5.24 40.72 4.30
5053 6865 1.754621 CCTCTGGCAGAGTAGCGGA 60.755 63.158 35.40 6.22 40.72 5.54
5054 6866 2.790791 CCCTCTGGCAGAGTAGCGG 61.791 68.421 35.40 27.02 40.72 5.52
5055 6867 2.790791 CCCCTCTGGCAGAGTAGCG 61.791 68.421 35.40 23.02 40.72 4.26
5056 6868 2.439104 CCCCCTCTGGCAGAGTAGC 61.439 68.421 35.40 0.00 40.72 3.58
5057 6869 0.105246 ATCCCCCTCTGGCAGAGTAG 60.105 60.000 35.40 27.20 40.72 2.57
5058 6870 0.343372 AATCCCCCTCTGGCAGAGTA 59.657 55.000 35.40 21.49 40.72 2.59
5059 6871 0.985490 GAATCCCCCTCTGGCAGAGT 60.985 60.000 35.40 20.72 40.72 3.24
5060 6872 0.693767 AGAATCCCCCTCTGGCAGAG 60.694 60.000 32.83 32.83 41.96 3.35
5061 6873 0.253347 AAGAATCCCCCTCTGGCAGA 60.253 55.000 17.68 17.68 0.00 4.26
5062 6874 0.182299 GAAGAATCCCCCTCTGGCAG 59.818 60.000 8.58 8.58 0.00 4.85
5063 6875 0.549902 TGAAGAATCCCCCTCTGGCA 60.550 55.000 0.00 0.00 0.00 4.92
5064 6876 0.625849 TTGAAGAATCCCCCTCTGGC 59.374 55.000 0.00 0.00 0.00 4.85
5065 6877 2.243221 ACATTGAAGAATCCCCCTCTGG 59.757 50.000 0.00 0.00 0.00 3.86
5066 6878 3.285484 CACATTGAAGAATCCCCCTCTG 58.715 50.000 0.00 0.00 0.00 3.35
5067 6879 2.243221 CCACATTGAAGAATCCCCCTCT 59.757 50.000 0.00 0.00 0.00 3.69
5068 6880 2.659428 CCACATTGAAGAATCCCCCTC 58.341 52.381 0.00 0.00 0.00 4.30
5069 6881 1.342374 GCCACATTGAAGAATCCCCCT 60.342 52.381 0.00 0.00 0.00 4.79
5070 6882 1.114627 GCCACATTGAAGAATCCCCC 58.885 55.000 0.00 0.00 0.00 5.40
5071 6883 1.114627 GGCCACATTGAAGAATCCCC 58.885 55.000 0.00 0.00 0.00 4.81
5072 6884 1.851304 TGGCCACATTGAAGAATCCC 58.149 50.000 0.00 0.00 0.00 3.85
5073 6885 4.476628 AAATGGCCACATTGAAGAATCC 57.523 40.909 8.16 0.00 46.25 3.01
5074 6886 5.481105 TGAAAATGGCCACATTGAAGAATC 58.519 37.500 8.16 0.35 46.25 2.52
5075 6887 5.486735 TGAAAATGGCCACATTGAAGAAT 57.513 34.783 8.16 0.00 46.25 2.40
5076 6888 4.952071 TGAAAATGGCCACATTGAAGAA 57.048 36.364 8.16 0.00 46.25 2.52
5077 6889 4.527427 TGATGAAAATGGCCACATTGAAGA 59.473 37.500 8.16 0.00 46.25 2.87
5078 6890 4.823157 TGATGAAAATGGCCACATTGAAG 58.177 39.130 8.16 0.00 46.25 3.02
5079 6891 4.886496 TGATGAAAATGGCCACATTGAA 57.114 36.364 8.16 0.00 46.25 2.69
5080 6892 4.283978 AGTTGATGAAAATGGCCACATTGA 59.716 37.500 8.16 0.00 46.25 2.57
5081 6893 4.571919 AGTTGATGAAAATGGCCACATTG 58.428 39.130 8.16 0.00 46.25 2.82
5083 6895 4.895668 AAGTTGATGAAAATGGCCACAT 57.104 36.364 8.16 7.00 39.54 3.21
5084 6896 5.279406 CCTTAAGTTGATGAAAATGGCCACA 60.279 40.000 8.16 0.44 0.00 4.17
5085 6897 5.170748 CCTTAAGTTGATGAAAATGGCCAC 58.829 41.667 8.16 0.00 0.00 5.01
5086 6898 4.322650 GCCTTAAGTTGATGAAAATGGCCA 60.323 41.667 8.56 8.56 0.00 5.36
5087 6899 4.183865 GCCTTAAGTTGATGAAAATGGCC 58.816 43.478 0.00 0.00 0.00 5.36
5088 6900 4.183865 GGCCTTAAGTTGATGAAAATGGC 58.816 43.478 0.00 0.00 36.27 4.40
5089 6901 5.404466 TGGCCTTAAGTTGATGAAAATGG 57.596 39.130 3.32 0.00 0.00 3.16
5090 6902 6.632909 TGATGGCCTTAAGTTGATGAAAATG 58.367 36.000 3.32 0.00 0.00 2.32
5091 6903 6.855763 TGATGGCCTTAAGTTGATGAAAAT 57.144 33.333 3.32 0.00 0.00 1.82
5092 6904 6.436847 TCATGATGGCCTTAAGTTGATGAAAA 59.563 34.615 3.32 0.00 0.00 2.29
5093 6905 5.951148 TCATGATGGCCTTAAGTTGATGAAA 59.049 36.000 3.32 0.00 0.00 2.69
5094 6906 5.508567 TCATGATGGCCTTAAGTTGATGAA 58.491 37.500 3.32 0.00 0.00 2.57
5095 6907 5.114764 TCATGATGGCCTTAAGTTGATGA 57.885 39.130 3.32 0.00 0.00 2.92
5096 6908 5.334646 CGATCATGATGGCCTTAAGTTGATG 60.335 44.000 14.30 0.00 0.00 3.07
5097 6909 4.758674 CGATCATGATGGCCTTAAGTTGAT 59.241 41.667 14.30 5.27 0.00 2.57
5098 6910 4.129380 CGATCATGATGGCCTTAAGTTGA 58.871 43.478 14.30 0.00 0.00 3.18
5099 6911 3.304257 GCGATCATGATGGCCTTAAGTTG 60.304 47.826 27.01 0.42 36.68 3.16
5100 6912 2.880890 GCGATCATGATGGCCTTAAGTT 59.119 45.455 27.01 0.00 36.68 2.66
5101 6913 2.105477 AGCGATCATGATGGCCTTAAGT 59.895 45.455 31.55 14.77 42.49 2.24
5102 6914 2.775890 AGCGATCATGATGGCCTTAAG 58.224 47.619 31.55 7.57 42.49 1.85
5103 6915 2.880268 CAAGCGATCATGATGGCCTTAA 59.120 45.455 31.55 0.00 42.49 1.85
5104 6916 2.158769 ACAAGCGATCATGATGGCCTTA 60.159 45.455 31.55 0.00 42.49 2.69
5105 6917 1.315690 CAAGCGATCATGATGGCCTT 58.684 50.000 31.55 23.05 42.49 4.35
5106 6918 0.182061 ACAAGCGATCATGATGGCCT 59.818 50.000 31.55 20.89 42.49 5.19
5107 6919 0.309922 CACAAGCGATCATGATGGCC 59.690 55.000 31.55 17.89 42.49 5.36
5108 6920 1.263484 CTCACAAGCGATCATGATGGC 59.737 52.381 29.19 29.19 41.94 4.40
5109 6921 2.558378 ACTCACAAGCGATCATGATGG 58.442 47.619 14.30 13.54 0.00 3.51
5110 6922 4.366586 ACTACTCACAAGCGATCATGATG 58.633 43.478 14.30 6.84 0.00 3.07
5111 6923 4.662468 ACTACTCACAAGCGATCATGAT 57.338 40.909 8.25 8.25 0.00 2.45
5112 6924 4.456280 AACTACTCACAAGCGATCATGA 57.544 40.909 0.00 0.00 0.00 3.07
5113 6925 5.349817 AGAAAACTACTCACAAGCGATCATG 59.650 40.000 0.00 0.00 0.00 3.07
5114 6926 5.482908 AGAAAACTACTCACAAGCGATCAT 58.517 37.500 0.00 0.00 0.00 2.45
5115 6927 4.883083 AGAAAACTACTCACAAGCGATCA 58.117 39.130 0.00 0.00 0.00 2.92
5116 6928 5.847670 AAGAAAACTACTCACAAGCGATC 57.152 39.130 0.00 0.00 0.00 3.69
5117 6929 5.049405 CCAAAGAAAACTACTCACAAGCGAT 60.049 40.000 0.00 0.00 0.00 4.58
5118 6930 4.272504 CCAAAGAAAACTACTCACAAGCGA 59.727 41.667 0.00 0.00 0.00 4.93
5164 6976 3.172339 CAAGGGAGAGGGGATCATCTAG 58.828 54.545 0.00 0.00 33.78 2.43
5175 6987 3.198635 TGTATTGAGAAGCAAGGGAGAGG 59.801 47.826 0.00 0.00 40.42 3.69
5212 7024 4.345271 TGAATCACAATCATGTTGAGCG 57.655 40.909 12.90 4.01 37.82 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.