Multiple sequence alignment - TraesCS7D01G453500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G453500 chr7D 100.000 2642 0 0 1 2642 572852057 572849416 0.000000e+00 4879.0
1 TraesCS7D01G453500 chr7D 84.830 1002 89 29 894 1853 573475015 573475995 0.000000e+00 950.0
2 TraesCS7D01G453500 chr7D 83.526 953 97 27 896 1815 573620295 573621220 0.000000e+00 835.0
3 TraesCS7D01G453500 chr7D 84.026 914 81 25 995 1853 573617939 573618842 0.000000e+00 819.0
4 TraesCS7D01G453500 chr7B 94.980 1474 58 9 505 1968 630663322 630661855 0.000000e+00 2298.0
5 TraesCS7D01G453500 chr7B 82.759 1015 98 36 896 1853 632331046 632332040 0.000000e+00 833.0
6 TraesCS7D01G453500 chr7B 82.328 962 96 34 894 1815 632335371 632336298 0.000000e+00 767.0
7 TraesCS7D01G453500 chr7B 90.530 528 49 1 2113 2640 630661780 630661254 0.000000e+00 697.0
8 TraesCS7D01G453500 chr7B 86.857 350 36 3 19 360 630664534 630664187 1.480000e-102 383.0
9 TraesCS7D01G453500 chr7B 75.799 219 37 13 67 275 16837425 16837213 2.160000e-16 97.1
10 TraesCS7D01G453500 chr7A 94.141 990 56 2 688 1676 662176938 662175950 0.000000e+00 1506.0
11 TraesCS7D01G453500 chr7A 83.448 1015 88 29 894 1850 663494487 663495479 0.000000e+00 870.0
12 TraesCS7D01G453500 chr7A 80.465 947 100 33 896 1799 663490456 663491360 0.000000e+00 645.0
13 TraesCS7D01G453500 chr7A 93.282 387 20 6 1663 2048 662175426 662175045 1.370000e-157 566.0
14 TraesCS7D01G453500 chr7A 83.759 431 50 12 2215 2642 662174528 662174115 8.870000e-105 390.0
15 TraesCS7D01G453500 chr7A 87.342 316 15 6 389 679 662177586 662177271 3.260000e-89 339.0
16 TraesCS7D01G453500 chr7A 87.667 300 26 5 19 311 662177876 662177581 3.260000e-89 339.0
17 TraesCS7D01G453500 chr7A 84.000 75 10 2 2404 2478 501163640 501163712 1.310000e-08 71.3
18 TraesCS7D01G453500 chr3B 76.866 268 45 11 19 275 781370590 781370329 4.590000e-28 135.0
19 TraesCS7D01G453500 chr2D 78.488 172 30 6 186 353 632128939 632129107 3.600000e-19 106.0
20 TraesCS7D01G453500 chr1D 74.427 262 59 8 19 275 25806005 25806263 3.600000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G453500 chr7D 572849416 572852057 2641 True 4879.0 4879 100.0000 1 2642 1 chr7D.!!$R1 2641
1 TraesCS7D01G453500 chr7D 573475015 573475995 980 False 950.0 950 84.8300 894 1853 1 chr7D.!!$F1 959
2 TraesCS7D01G453500 chr7D 573617939 573621220 3281 False 827.0 835 83.7760 896 1853 2 chr7D.!!$F2 957
3 TraesCS7D01G453500 chr7B 630661254 630664534 3280 True 1126.0 2298 90.7890 19 2640 3 chr7B.!!$R2 2621
4 TraesCS7D01G453500 chr7B 632331046 632336298 5252 False 800.0 833 82.5435 894 1853 2 chr7B.!!$F1 959
5 TraesCS7D01G453500 chr7A 663490456 663495479 5023 False 757.5 870 81.9565 894 1850 2 chr7A.!!$F2 956
6 TraesCS7D01G453500 chr7A 662174115 662177876 3761 True 628.0 1506 89.2382 19 2642 5 chr7A.!!$R1 2623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 356 0.17576 AACGGTGTGCATAGCTCGAT 59.824 50.0 11.0 0.0 0.0 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 8109 0.518636 CCTCTCGTTTGCCACACATG 59.481 55.0 0.0 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 0.599991 TGTCATCTCGTGCTTGCGTT 60.600 50.000 0.00 0.00 0.00 4.84
74 76 0.527385 GCGTTGTGCCTTTGCTGAAA 60.527 50.000 0.00 0.00 38.71 2.69
88 90 4.524316 TGCTGAAAATGGTGGATTGAAG 57.476 40.909 0.00 0.00 0.00 3.02
122 124 4.455606 GGATGAAAATCCCGAGATTGACT 58.544 43.478 0.00 0.00 42.03 3.41
154 156 5.048013 GGACTCATCATCATCGGTGTATGTA 60.048 44.000 0.00 0.00 0.00 2.29
170 172 6.968904 GGTGTATGTACGACGATTTCTTCTTA 59.031 38.462 0.00 0.00 0.00 2.10
195 203 6.359480 AGGCTTAGCGTTGTGTATATTTTC 57.641 37.500 0.00 0.00 0.00 2.29
251 261 3.008049 GGTTGTCTGGTGGAGATACTGTT 59.992 47.826 0.00 0.00 31.63 3.16
319 329 9.361315 ACGGTTGCTGGATTTTAAATAATAAAC 57.639 29.630 0.00 0.00 0.00 2.01
320 330 8.528295 CGGTTGCTGGATTTTAAATAATAAACG 58.472 33.333 0.00 0.00 0.00 3.60
340 350 7.576750 AAACGATATATAACGGTGTGCATAG 57.423 36.000 15.68 0.00 0.00 2.23
346 356 0.175760 AACGGTGTGCATAGCTCGAT 59.824 50.000 11.00 0.00 0.00 3.59
355 365 1.403514 GCATAGCTCGATGTAGAGGCC 60.404 57.143 0.00 0.00 38.63 5.19
360 370 2.136196 CTCGATGTAGAGGCCGGAGC 62.136 65.000 5.05 0.00 34.74 4.70
362 372 1.663173 GATGTAGAGGCCGGAGCTC 59.337 63.158 5.05 4.71 39.73 4.09
363 373 2.136196 GATGTAGAGGCCGGAGCTCG 62.136 65.000 5.05 3.03 39.73 5.03
364 374 2.516460 GTAGAGGCCGGAGCTCGA 60.516 66.667 5.05 0.00 42.43 4.04
365 375 1.899534 GTAGAGGCCGGAGCTCGAT 60.900 63.158 5.05 0.00 42.43 3.59
366 376 1.899054 TAGAGGCCGGAGCTCGATG 60.899 63.158 5.05 0.00 42.43 3.84
368 378 2.123854 AGGCCGGAGCTCGATGTA 60.124 61.111 5.05 0.00 42.43 2.29
369 379 2.136196 GAGGCCGGAGCTCGATGTAG 62.136 65.000 5.05 0.00 42.43 2.74
370 380 2.194212 GGCCGGAGCTCGATGTAGA 61.194 63.158 5.05 0.00 42.43 2.59
371 381 1.284408 GCCGGAGCTCGATGTAGAG 59.716 63.158 5.05 0.00 42.43 2.43
372 382 1.953017 CCGGAGCTCGATGTAGAGG 59.047 63.158 7.83 0.00 42.43 3.69
376 386 2.709170 AGCTCGATGTAGAGGTCGG 58.291 57.895 0.00 0.00 44.67 4.79
378 388 0.589223 GCTCGATGTAGAGGTCGGAG 59.411 60.000 0.00 0.00 38.63 4.63
379 389 1.231221 CTCGATGTAGAGGTCGGAGG 58.769 60.000 0.00 0.00 38.34 4.30
381 391 1.064906 TCGATGTAGAGGTCGGAGGTT 60.065 52.381 0.00 0.00 38.34 3.50
382 392 2.171237 TCGATGTAGAGGTCGGAGGTTA 59.829 50.000 0.00 0.00 38.34 2.85
383 393 2.290093 CGATGTAGAGGTCGGAGGTTAC 59.710 54.545 0.00 0.00 34.39 2.50
384 394 2.134789 TGTAGAGGTCGGAGGTTACC 57.865 55.000 0.00 0.00 35.91 2.85
385 395 1.341383 TGTAGAGGTCGGAGGTTACCC 60.341 57.143 0.00 0.00 36.34 3.69
386 396 1.064091 GTAGAGGTCGGAGGTTACCCT 60.064 57.143 0.00 0.00 46.66 4.34
449 1121 9.581099 TTCTCAAAGCCTTTAAAGTTTTTACAG 57.419 29.630 14.03 11.56 0.00 2.74
675 1430 4.337274 TCAGATGCTGATAAAACCATGCAG 59.663 41.667 0.00 0.00 35.39 4.41
679 1434 6.774170 AGATGCTGATAAAACCATGCAGATAA 59.226 34.615 0.00 0.00 33.87 1.75
680 1435 6.964807 TGCTGATAAAACCATGCAGATAAT 57.035 33.333 0.00 0.00 0.00 1.28
936 2016 6.886459 TCCTATATAATGGAGCCTTGCATTTC 59.114 38.462 0.00 0.00 41.91 2.17
958 2038 2.422597 CATTTTCGTCACCACCTGCTA 58.577 47.619 0.00 0.00 0.00 3.49
969 2052 1.089920 CACCTGCTAAGCACATCCAC 58.910 55.000 0.00 0.00 33.79 4.02
979 2062 3.077484 AGCACATCCACTAAAGCACAT 57.923 42.857 0.00 0.00 0.00 3.21
992 2075 6.037610 CACTAAAGCACATATCCAGGAAGAAC 59.962 42.308 0.00 0.00 0.00 3.01
1014 2099 1.139853 CTAGCGATGAAGGGCCTCTTT 59.860 52.381 6.46 0.00 35.50 2.52
1023 2108 2.727544 GGCCTCTTTTTGTGCGCA 59.272 55.556 5.66 5.66 0.00 6.09
1224 6599 0.033504 ACGACAACAAGATCTGCGGT 59.966 50.000 0.00 0.00 0.00 5.68
1447 6822 2.811317 CGGAGTTCTGCGGTGCTC 60.811 66.667 5.86 9.55 0.00 4.26
1649 7048 2.760092 AGTGTGTGCCTTGAATTGTTGT 59.240 40.909 0.00 0.00 0.00 3.32
1898 7871 3.275143 TGGTGTTGCCATATCTTTACCG 58.725 45.455 0.00 0.00 43.61 4.02
1927 7916 6.949352 ACTCATGGTTATTATTTGCTGAGG 57.051 37.500 0.00 0.00 34.58 3.86
1928 7917 6.662755 ACTCATGGTTATTATTTGCTGAGGA 58.337 36.000 0.00 0.00 34.58 3.71
1933 7922 9.090692 CATGGTTATTATTTGCTGAGGAAAAAG 57.909 33.333 2.60 0.00 0.00 2.27
1971 7960 7.621428 ACAATAGAACTGTGAATGGAATGAG 57.379 36.000 0.00 0.00 0.00 2.90
1976 7965 3.005554 ACTGTGAATGGAATGAGCTTCG 58.994 45.455 0.00 0.00 34.45 3.79
1989 7978 6.470235 GGAATGAGCTTCGAACATATTGTTTG 59.530 38.462 0.00 1.87 41.28 2.93
2008 7997 1.795170 GACAGCAGCGCCCAAAAGAA 61.795 55.000 2.29 0.00 0.00 2.52
2013 8002 0.097674 CAGCGCCCAAAAGAAGATCG 59.902 55.000 2.29 0.00 0.00 3.69
2025 8014 6.529829 CCAAAAGAAGATCGTTGTGAACAAAA 59.470 34.615 0.00 0.00 37.63 2.44
2026 8015 7.383361 CAAAAGAAGATCGTTGTGAACAAAAC 58.617 34.615 0.00 0.00 37.63 2.43
2164 8153 0.100682 CTACCGTGGACACTGGATCG 59.899 60.000 16.30 0.00 0.00 3.69
2213 8585 5.238432 TGTTGTCGCAGTAAGATCATTTTGT 59.762 36.000 0.00 0.00 0.00 2.83
2316 8689 4.345962 CGTGTGGACCGCACCGTA 62.346 66.667 28.20 0.00 41.22 4.02
2337 8710 0.887933 GGACGTGTTTTGCCATCCAT 59.112 50.000 0.00 0.00 0.00 3.41
2347 8720 2.111878 CCATCCATCGCAGTCCCC 59.888 66.667 0.00 0.00 0.00 4.81
2358 8731 1.327690 GCAGTCCCCGTATCTGTCCA 61.328 60.000 0.00 0.00 0.00 4.02
2398 10689 0.382515 TTTTCCACAAACCGGAAGCG 59.617 50.000 9.46 0.00 43.29 4.68
2457 11853 4.351938 CGCGTCCGACAACCCTGA 62.352 66.667 0.00 0.00 36.29 3.86
2511 12176 2.479566 TTCTCTCCAACAGATGCACC 57.520 50.000 0.00 0.00 0.00 5.01
2584 12249 1.080501 CGTGCGATGTGACCTGACT 60.081 57.895 0.00 0.00 0.00 3.41
2615 12280 0.738975 CTAATCCACGCGACCTCTCA 59.261 55.000 15.93 0.00 0.00 3.27
2619 12284 4.056125 CACGCGACCTCTCAGGCA 62.056 66.667 15.93 0.00 39.63 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 7.230510 AGTCTTATTGGAGATCTAGTGCACTAG 59.769 40.741 37.56 37.56 45.57 2.57
13 14 7.063593 AGTCTTATTGGAGATCTAGTGCACTA 58.936 38.462 24.63 24.63 0.00 2.74
14 15 5.896678 AGTCTTATTGGAGATCTAGTGCACT 59.103 40.000 25.12 25.12 0.00 4.40
15 16 6.155475 AGTCTTATTGGAGATCTAGTGCAC 57.845 41.667 9.40 9.40 0.00 4.57
16 17 7.507277 ACATAGTCTTATTGGAGATCTAGTGCA 59.493 37.037 0.00 0.00 0.00 4.57
17 18 7.891561 ACATAGTCTTATTGGAGATCTAGTGC 58.108 38.462 0.00 0.00 0.00 4.40
30 31 6.398234 AGCACGAGATGACATAGTCTTATT 57.602 37.500 0.00 0.00 33.15 1.40
59 61 1.761784 ACCATTTTCAGCAAAGGCACA 59.238 42.857 0.00 0.00 44.61 4.57
74 76 3.771216 AGTCAAGCTTCAATCCACCATT 58.229 40.909 0.00 0.00 0.00 3.16
88 90 4.498241 GATTTTCATCCCCAAAGTCAAGC 58.502 43.478 0.00 0.00 0.00 4.01
118 120 2.441375 TGATGAGTCCAACCCAAAGTCA 59.559 45.455 0.00 0.00 0.00 3.41
122 124 3.805066 TGATGATGAGTCCAACCCAAA 57.195 42.857 0.00 0.00 0.00 3.28
154 156 4.566987 AGCCTTTAAGAAGAAATCGTCGT 58.433 39.130 0.00 0.00 34.71 4.34
170 172 6.753107 AAATATACACAACGCTAAGCCTTT 57.247 33.333 0.00 0.00 0.00 3.11
271 281 1.068816 CAACATCGACCCGGGAAAAAC 60.069 52.381 32.02 11.64 0.00 2.43
319 329 5.340803 AGCTATGCACACCGTTATATATCG 58.659 41.667 6.28 6.28 0.00 2.92
320 330 5.455849 CGAGCTATGCACACCGTTATATATC 59.544 44.000 0.00 0.00 0.00 1.63
329 339 0.528466 ACATCGAGCTATGCACACCG 60.528 55.000 0.00 0.00 0.00 4.94
330 340 2.034685 TCTACATCGAGCTATGCACACC 59.965 50.000 0.00 0.00 0.00 4.16
340 350 2.136196 CTCCGGCCTCTACATCGAGC 62.136 65.000 0.00 0.00 0.00 5.03
346 356 2.626255 ATCGAGCTCCGGCCTCTACA 62.626 60.000 8.47 4.71 39.73 2.74
355 365 0.589223 GACCTCTACATCGAGCTCCG 59.411 60.000 8.47 3.57 40.25 4.63
360 370 1.231221 CCTCCGACCTCTACATCGAG 58.769 60.000 0.00 0.00 40.86 4.04
362 372 1.390565 AACCTCCGACCTCTACATCG 58.609 55.000 0.00 0.00 38.08 3.84
363 373 2.622470 GGTAACCTCCGACCTCTACATC 59.378 54.545 0.00 0.00 32.58 3.06
364 374 2.664015 GGTAACCTCCGACCTCTACAT 58.336 52.381 0.00 0.00 32.58 2.29
365 375 2.134789 GGTAACCTCCGACCTCTACA 57.865 55.000 0.00 0.00 32.58 2.74
449 1121 5.584649 TGTGAATCCCAATGTCTATTCGAAC 59.415 40.000 0.00 0.00 32.23 3.95
563 1318 2.744202 ACATGCTCGTTTCATTCTCCAC 59.256 45.455 0.00 0.00 0.00 4.02
936 2016 0.110238 CAGGTGGTGACGAAAATGCG 60.110 55.000 0.00 0.00 37.29 4.73
945 2025 0.250295 TGTGCTTAGCAGGTGGTGAC 60.250 55.000 7.34 0.00 40.08 3.67
949 2029 0.035152 TGGATGTGCTTAGCAGGTGG 60.035 55.000 7.34 0.00 40.08 4.61
958 2038 2.862541 TGTGCTTTAGTGGATGTGCTT 58.137 42.857 0.00 0.00 0.00 3.91
969 2052 5.529060 GGTTCTTCCTGGATATGTGCTTTAG 59.471 44.000 0.00 0.00 0.00 1.85
979 2062 2.091499 TCGCTAGGGTTCTTCCTGGATA 60.091 50.000 6.70 0.00 37.57 2.59
1023 2108 1.066257 CGCAAAGGCAAGTGCAAGT 59.934 52.632 5.52 0.00 44.36 3.16
1593 6968 2.303022 CAGGAAGGAAGGAGTGTAGCAA 59.697 50.000 0.00 0.00 0.00 3.91
1649 7048 4.256110 CTGCAACACTCATACTTCCATGA 58.744 43.478 0.00 0.00 33.88 3.07
1898 7871 7.915397 CAGCAAATAATAACCATGAGTACAACC 59.085 37.037 0.00 0.00 0.00 3.77
1971 7960 4.554973 GCTGTCAAACAATATGTTCGAAGC 59.445 41.667 0.00 0.00 40.14 3.86
1976 7965 3.848019 CGCTGCTGTCAAACAATATGTTC 59.152 43.478 0.00 0.00 40.14 3.18
1989 7978 1.795170 TTCTTTTGGGCGCTGCTGTC 61.795 55.000 7.64 0.00 0.00 3.51
2054 8043 9.988350 CAATAGTACAATTTGTAGCGAGAATTT 57.012 29.630 9.49 0.00 32.84 1.82
2055 8044 9.378551 TCAATAGTACAATTTGTAGCGAGAATT 57.621 29.630 9.49 2.16 32.84 2.17
2056 8045 8.942338 TCAATAGTACAATTTGTAGCGAGAAT 57.058 30.769 9.49 0.00 32.84 2.40
2058 8047 7.491372 CCTTCAATAGTACAATTTGTAGCGAGA 59.509 37.037 9.49 2.85 32.84 4.04
2059 8048 7.277981 ACCTTCAATAGTACAATTTGTAGCGAG 59.722 37.037 9.49 0.72 32.84 5.03
2060 8049 7.101054 ACCTTCAATAGTACAATTTGTAGCGA 58.899 34.615 9.49 2.84 32.84 4.93
2061 8050 7.303634 ACCTTCAATAGTACAATTTGTAGCG 57.696 36.000 9.49 0.00 32.84 4.26
2104 8093 6.639279 GCCACACATGTAATTTACGAGTTTTT 59.361 34.615 0.00 0.00 0.00 1.94
2105 8094 6.146898 GCCACACATGTAATTTACGAGTTTT 58.853 36.000 0.00 0.00 0.00 2.43
2106 8095 5.239744 TGCCACACATGTAATTTACGAGTTT 59.760 36.000 0.00 0.00 0.00 2.66
2107 8096 4.757657 TGCCACACATGTAATTTACGAGTT 59.242 37.500 0.00 0.00 0.00 3.01
2108 8097 4.320023 TGCCACACATGTAATTTACGAGT 58.680 39.130 0.00 0.86 0.00 4.18
2109 8098 4.937696 TGCCACACATGTAATTTACGAG 57.062 40.909 0.00 0.29 0.00 4.18
2110 8099 5.453648 GTTTGCCACACATGTAATTTACGA 58.546 37.500 0.00 0.00 0.00 3.43
2111 8100 4.319639 CGTTTGCCACACATGTAATTTACG 59.680 41.667 0.00 0.00 0.00 3.18
2112 8101 5.453648 TCGTTTGCCACACATGTAATTTAC 58.546 37.500 0.00 0.00 0.00 2.01
2113 8102 5.470437 TCTCGTTTGCCACACATGTAATTTA 59.530 36.000 0.00 0.00 0.00 1.40
2114 8103 4.277174 TCTCGTTTGCCACACATGTAATTT 59.723 37.500 0.00 0.00 0.00 1.82
2115 8104 3.818210 TCTCGTTTGCCACACATGTAATT 59.182 39.130 0.00 0.00 0.00 1.40
2116 8105 3.407698 TCTCGTTTGCCACACATGTAAT 58.592 40.909 0.00 0.00 0.00 1.89
2117 8106 2.805671 CTCTCGTTTGCCACACATGTAA 59.194 45.455 0.00 0.00 0.00 2.41
2118 8107 2.412870 CTCTCGTTTGCCACACATGTA 58.587 47.619 0.00 0.00 0.00 2.29
2119 8108 1.229428 CTCTCGTTTGCCACACATGT 58.771 50.000 0.00 0.00 0.00 3.21
2120 8109 0.518636 CCTCTCGTTTGCCACACATG 59.481 55.000 0.00 0.00 0.00 3.21
2121 8110 1.237285 GCCTCTCGTTTGCCACACAT 61.237 55.000 0.00 0.00 0.00 3.21
2164 8153 9.708222 CAGACATAAATGTATTTTAGTGTCTGC 57.292 33.333 25.71 10.12 45.00 4.26
2213 8585 7.773690 GGGCTTTTGTTGTCCTCTCTAAATATA 59.226 37.037 0.00 0.00 0.00 0.86
2225 8597 1.047801 ATGGTGGGCTTTTGTTGTCC 58.952 50.000 0.00 0.00 0.00 4.02
2295 8668 2.574929 GTGCGGTCCACACGGATA 59.425 61.111 0.00 0.00 45.33 2.59
2316 8689 1.512156 GGATGGCAAAACACGTCCGT 61.512 55.000 0.00 0.00 33.49 4.69
2337 8710 1.379443 ACAGATACGGGGACTGCGA 60.379 57.895 0.00 0.00 39.14 5.10
2347 8720 1.063649 CGGTCCGTGGACAGATACG 59.936 63.158 20.02 10.26 46.20 3.06
2398 10689 0.875059 CCGCAAAGTCTCCTTGGTTC 59.125 55.000 0.00 0.00 0.00 3.62
2443 11839 2.346365 GGGTCAGGGTTGTCGGAC 59.654 66.667 0.00 0.00 0.00 4.79
2457 11853 1.726192 GGAGAGGGTTTTGGGTGGGT 61.726 60.000 0.00 0.00 0.00 4.51
2568 12233 1.184970 TCCAGTCAGGTCACATCGCA 61.185 55.000 0.00 0.00 39.02 5.10
2570 12235 0.174389 CCTCCAGTCAGGTCACATCG 59.826 60.000 0.00 0.00 39.02 3.84
2584 12249 2.505982 GATTAGCGCTGCCCTCCA 59.494 61.111 22.90 0.00 0.00 3.86
2619 12284 1.965930 TCTGCATTGAAGCGGCGTT 60.966 52.632 9.37 0.00 40.71 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.