Multiple sequence alignment - TraesCS7D01G451400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G451400 chr7D 100.000 2342 0 0 1 2342 571195226 571197567 0.000000e+00 4325.0
1 TraesCS7D01G451400 chr7A 94.079 912 32 12 765 1663 660408077 660408979 0.000000e+00 1365.0
2 TraesCS7D01G451400 chr7A 98.099 526 10 0 1817 2342 660409091 660409616 0.000000e+00 917.0
3 TraesCS7D01G451400 chr7A 91.262 206 12 5 4 209 660407713 660407912 2.290000e-70 276.0
4 TraesCS7D01G451400 chr7B 91.872 972 49 19 702 1663 627054534 627055485 0.000000e+00 1330.0
5 TraesCS7D01G451400 chr7B 92.391 644 24 8 1724 2342 627055665 627056308 0.000000e+00 894.0
6 TraesCS7D01G451400 chr7B 82.016 367 40 17 201 560 21312403 21312056 2.940000e-74 289.0
7 TraesCS7D01G451400 chr6B 90.095 525 44 6 1817 2341 699028996 699029512 0.000000e+00 675.0
8 TraesCS7D01G451400 chr6B 88.442 199 21 2 1463 1661 699028456 699028652 3.010000e-59 239.0
9 TraesCS7D01G451400 chr6B 86.066 122 16 1 584 704 87535416 87535295 1.890000e-26 130.0
10 TraesCS7D01G451400 chr5D 81.623 419 50 19 183 587 260675559 260675964 2.900000e-84 322.0
11 TraesCS7D01G451400 chr5D 88.136 118 10 2 587 700 420207342 420207459 1.130000e-28 137.0
12 TraesCS7D01G451400 chr5D 87.395 119 12 3 584 701 260675850 260675966 1.460000e-27 134.0
13 TraesCS7D01G451400 chr6D 81.327 407 41 20 192 587 430045225 430044843 4.890000e-77 298.0
14 TraesCS7D01G451400 chr3D 81.234 389 41 16 205 587 590982283 590982645 3.810000e-73 285.0
15 TraesCS7D01G451400 chr3D 86.441 118 15 1 584 701 513859572 513859688 6.790000e-26 128.0
16 TraesCS7D01G451400 chr3D 84.375 128 17 3 584 710 119655819 119655694 3.160000e-24 122.0
17 TraesCS7D01G451400 chr2D 80.939 362 43 16 233 587 589644458 589644116 1.780000e-66 263.0
18 TraesCS7D01G451400 chr2D 76.692 399 56 25 205 585 2079594 2079215 1.110000e-43 187.0
19 TraesCS7D01G451400 chr2D 88.034 117 13 1 584 700 20687367 20687252 1.130000e-28 137.0
20 TraesCS7D01G451400 chr2D 86.555 119 13 3 584 701 81638944 81638828 6.790000e-26 128.0
21 TraesCS7D01G451400 chr2A 79.695 394 54 19 203 586 1221077 1220700 6.420000e-66 261.0
22 TraesCS7D01G451400 chr3B 79.188 394 56 14 204 587 814364166 814364543 1.390000e-62 250.0
23 TraesCS7D01G451400 chr4D 86.344 227 24 4 366 587 491001464 491001688 8.360000e-60 241.0
24 TraesCS7D01G451400 chr5B 79.501 361 46 19 206 557 24680029 24680370 5.030000e-57 231.0
25 TraesCS7D01G451400 chr4A 78.228 395 48 24 205 586 478167121 478166752 3.920000e-53 219.0
26 TraesCS7D01G451400 chr4A 83.404 235 30 7 358 587 603456963 603456733 2.360000e-50 209.0
27 TraesCS7D01G451400 chr4B 87.826 115 14 0 585 699 260050792 260050678 4.060000e-28 135.0
28 TraesCS7D01G451400 chr2B 87.179 117 15 0 584 700 51674799 51674683 1.460000e-27 134.0
29 TraesCS7D01G451400 chr5A 87.288 118 11 2 587 700 533849458 533849575 5.250000e-27 132.0
30 TraesCS7D01G451400 chr3A 86.441 118 15 1 584 701 739918860 739918744 6.790000e-26 128.0
31 TraesCS7D01G451400 chr1B 88.889 54 6 0 74 127 92589832 92589885 1.500000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G451400 chr7D 571195226 571197567 2341 False 4325.000000 4325 100.0000 1 2342 1 chr7D.!!$F1 2341
1 TraesCS7D01G451400 chr7A 660407713 660409616 1903 False 852.666667 1365 94.4800 4 2342 3 chr7A.!!$F1 2338
2 TraesCS7D01G451400 chr7B 627054534 627056308 1774 False 1112.000000 1330 92.1315 702 2342 2 chr7B.!!$F1 1640
3 TraesCS7D01G451400 chr6B 699028456 699029512 1056 False 457.000000 675 89.2685 1463 2341 2 chr6B.!!$F1 878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 414 0.037697 TGACGAGCGCCACTTTACAT 60.038 50.0 2.29 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 2070 2.02893 GTGGGTGATAGGCTCTTATCGG 60.029 54.545 0.0 0.0 33.63 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.858052 ATATTTGTCTTCTTCTTTTTGCACG 57.142 32.000 0.00 0.00 0.00 5.34
131 132 4.404507 TTCACGCTCTAGAAAATTGCAC 57.595 40.909 0.00 0.00 0.00 4.57
139 140 6.417635 CGCTCTAGAAAATTGCACTTTGAAAA 59.582 34.615 2.45 0.00 0.00 2.29
153 154 4.879545 ACTTTGAAAACGAGCTCCTTGTAA 59.120 37.500 8.47 0.00 0.00 2.41
204 205 7.433680 AGTCGAAGTGCATACATTGATACATA 58.566 34.615 0.00 0.00 0.00 2.29
205 206 7.382488 AGTCGAAGTGCATACATTGATACATAC 59.618 37.037 0.00 0.00 0.00 2.39
206 207 7.382488 GTCGAAGTGCATACATTGATACATACT 59.618 37.037 0.00 0.00 0.00 2.12
207 208 8.573035 TCGAAGTGCATACATTGATACATACTA 58.427 33.333 0.00 0.00 0.00 1.82
208 209 8.854312 CGAAGTGCATACATTGATACATACTAG 58.146 37.037 0.00 0.00 0.00 2.57
209 210 9.698309 GAAGTGCATACATTGATACATACTAGT 57.302 33.333 0.00 0.00 0.00 2.57
210 211 9.481340 AAGTGCATACATTGATACATACTAGTG 57.519 33.333 5.39 0.00 0.00 2.74
211 212 8.090831 AGTGCATACATTGATACATACTAGTGG 58.909 37.037 5.39 0.00 0.00 4.00
212 213 7.872993 GTGCATACATTGATACATACTAGTGGT 59.127 37.037 5.39 6.45 0.00 4.16
213 214 8.428852 TGCATACATTGATACATACTAGTGGTT 58.571 33.333 5.39 0.00 0.00 3.67
214 215 8.712363 GCATACATTGATACATACTAGTGGTTG 58.288 37.037 5.39 3.28 0.00 3.77
215 216 9.208022 CATACATTGATACATACTAGTGGTTGG 57.792 37.037 5.39 0.00 0.00 3.77
216 217 6.591935 ACATTGATACATACTAGTGGTTGGG 58.408 40.000 5.39 0.00 0.00 4.12
217 218 5.623956 TTGATACATACTAGTGGTTGGGG 57.376 43.478 5.39 0.00 0.00 4.96
218 219 4.627015 TGATACATACTAGTGGTTGGGGT 58.373 43.478 5.39 0.00 0.00 4.95
219 220 4.407621 TGATACATACTAGTGGTTGGGGTG 59.592 45.833 5.39 0.00 0.00 4.61
220 221 1.280998 ACATACTAGTGGTTGGGGTGC 59.719 52.381 5.39 0.00 0.00 5.01
221 222 0.916809 ATACTAGTGGTTGGGGTGCC 59.083 55.000 5.39 0.00 0.00 5.01
222 223 0.474079 TACTAGTGGTTGGGGTGCCA 60.474 55.000 5.39 0.00 0.00 4.92
239 240 4.954970 ACCCTGTGGTGCCGCTTG 62.955 66.667 3.31 0.00 45.58 4.01
240 241 4.641645 CCCTGTGGTGCCGCTTGA 62.642 66.667 3.31 0.00 0.00 3.02
241 242 3.052082 CCTGTGGTGCCGCTTGAG 61.052 66.667 3.31 0.00 0.00 3.02
242 243 2.031012 CTGTGGTGCCGCTTGAGA 59.969 61.111 3.31 0.00 0.00 3.27
243 244 2.031012 TGTGGTGCCGCTTGAGAG 59.969 61.111 3.31 0.00 0.00 3.20
244 245 2.343758 GTGGTGCCGCTTGAGAGA 59.656 61.111 0.00 0.00 0.00 3.10
245 246 1.301716 GTGGTGCCGCTTGAGAGAA 60.302 57.895 0.00 0.00 0.00 2.87
246 247 0.884704 GTGGTGCCGCTTGAGAGAAA 60.885 55.000 0.00 0.00 0.00 2.52
247 248 0.179032 TGGTGCCGCTTGAGAGAAAA 60.179 50.000 0.00 0.00 0.00 2.29
248 249 1.168714 GGTGCCGCTTGAGAGAAAAT 58.831 50.000 0.00 0.00 0.00 1.82
249 250 1.541588 GGTGCCGCTTGAGAGAAAATT 59.458 47.619 0.00 0.00 0.00 1.82
250 251 2.589014 GTGCCGCTTGAGAGAAAATTG 58.411 47.619 0.00 0.00 0.00 2.32
251 252 2.030805 GTGCCGCTTGAGAGAAAATTGT 60.031 45.455 0.00 0.00 0.00 2.71
252 253 2.030893 TGCCGCTTGAGAGAAAATTGTG 60.031 45.455 0.00 0.00 0.00 3.33
253 254 2.589014 CCGCTTGAGAGAAAATTGTGC 58.411 47.619 0.00 0.00 0.00 4.57
254 255 2.236690 CGCTTGAGAGAAAATTGTGCG 58.763 47.619 0.00 0.00 35.22 5.34
255 256 2.349817 CGCTTGAGAGAAAATTGTGCGT 60.350 45.455 0.00 0.00 36.78 5.24
256 257 2.975851 GCTTGAGAGAAAATTGTGCGTG 59.024 45.455 0.00 0.00 0.00 5.34
257 258 2.686558 TGAGAGAAAATTGTGCGTGC 57.313 45.000 0.00 0.00 0.00 5.34
258 259 1.069973 TGAGAGAAAATTGTGCGTGCG 60.070 47.619 0.00 0.00 0.00 5.34
259 260 0.944386 AGAGAAAATTGTGCGTGCGT 59.056 45.000 0.00 0.00 0.00 5.24
260 261 1.333619 AGAGAAAATTGTGCGTGCGTT 59.666 42.857 0.00 0.00 0.00 4.84
261 262 2.116366 GAGAAAATTGTGCGTGCGTTT 58.884 42.857 0.00 0.00 0.00 3.60
262 263 2.533942 GAGAAAATTGTGCGTGCGTTTT 59.466 40.909 0.00 0.00 0.00 2.43
263 264 2.533942 AGAAAATTGTGCGTGCGTTTTC 59.466 40.909 12.49 12.49 38.44 2.29
264 265 1.914634 AAATTGTGCGTGCGTTTTCA 58.085 40.000 0.00 0.00 0.00 2.69
265 266 2.132740 AATTGTGCGTGCGTTTTCAT 57.867 40.000 0.00 0.00 0.00 2.57
266 267 2.132740 ATTGTGCGTGCGTTTTCATT 57.867 40.000 0.00 0.00 0.00 2.57
267 268 1.914634 TTGTGCGTGCGTTTTCATTT 58.085 40.000 0.00 0.00 0.00 2.32
268 269 2.757686 TGTGCGTGCGTTTTCATTTA 57.242 40.000 0.00 0.00 0.00 1.40
269 270 3.066369 TGTGCGTGCGTTTTCATTTAA 57.934 38.095 0.00 0.00 0.00 1.52
270 271 3.435566 TGTGCGTGCGTTTTCATTTAAA 58.564 36.364 0.00 0.00 0.00 1.52
271 272 3.857665 TGTGCGTGCGTTTTCATTTAAAA 59.142 34.783 0.00 0.00 34.66 1.52
272 273 4.326278 TGTGCGTGCGTTTTCATTTAAAAA 59.674 33.333 0.00 0.00 38.76 1.94
289 290 1.534729 AAAAACATGAGGTCCTCGCC 58.465 50.000 14.34 0.00 32.35 5.54
290 291 0.693049 AAAACATGAGGTCCTCGCCT 59.307 50.000 14.34 0.00 42.53 5.52
298 299 2.572209 AGGTCCTCGCCTCTATCTAC 57.428 55.000 0.00 0.00 32.39 2.59
299 300 1.775459 AGGTCCTCGCCTCTATCTACA 59.225 52.381 0.00 0.00 32.39 2.74
300 301 2.175069 AGGTCCTCGCCTCTATCTACAA 59.825 50.000 0.00 0.00 32.39 2.41
301 302 2.957006 GGTCCTCGCCTCTATCTACAAA 59.043 50.000 0.00 0.00 0.00 2.83
302 303 3.383825 GGTCCTCGCCTCTATCTACAAAA 59.616 47.826 0.00 0.00 0.00 2.44
303 304 4.142004 GGTCCTCGCCTCTATCTACAAAAA 60.142 45.833 0.00 0.00 0.00 1.94
339 340 2.725221 AATCCTCACCTCCATCTTGC 57.275 50.000 0.00 0.00 0.00 4.01
340 341 1.588239 ATCCTCACCTCCATCTTGCA 58.412 50.000 0.00 0.00 0.00 4.08
341 342 1.588239 TCCTCACCTCCATCTTGCAT 58.412 50.000 0.00 0.00 0.00 3.96
342 343 1.487976 TCCTCACCTCCATCTTGCATC 59.512 52.381 0.00 0.00 0.00 3.91
343 344 1.489649 CCTCACCTCCATCTTGCATCT 59.510 52.381 0.00 0.00 0.00 2.90
344 345 2.562635 CTCACCTCCATCTTGCATCTG 58.437 52.381 0.00 0.00 0.00 2.90
345 346 2.169978 CTCACCTCCATCTTGCATCTGA 59.830 50.000 0.00 0.00 0.00 3.27
346 347 2.169978 TCACCTCCATCTTGCATCTGAG 59.830 50.000 0.00 0.00 0.00 3.35
347 348 2.169978 CACCTCCATCTTGCATCTGAGA 59.830 50.000 0.00 0.00 0.00 3.27
348 349 2.842496 ACCTCCATCTTGCATCTGAGAA 59.158 45.455 0.00 0.00 0.00 2.87
349 350 3.265221 ACCTCCATCTTGCATCTGAGAAA 59.735 43.478 0.00 0.00 0.00 2.52
350 351 4.263639 ACCTCCATCTTGCATCTGAGAAAA 60.264 41.667 0.00 0.00 0.00 2.29
351 352 4.335874 CCTCCATCTTGCATCTGAGAAAAG 59.664 45.833 0.00 0.00 0.00 2.27
352 353 5.169992 TCCATCTTGCATCTGAGAAAAGA 57.830 39.130 7.70 7.70 0.00 2.52
353 354 5.563592 TCCATCTTGCATCTGAGAAAAGAA 58.436 37.500 8.90 0.00 31.14 2.52
354 355 5.646793 TCCATCTTGCATCTGAGAAAAGAAG 59.353 40.000 8.90 5.77 31.14 2.85
355 356 5.415077 CCATCTTGCATCTGAGAAAAGAAGT 59.585 40.000 8.90 0.00 31.14 3.01
356 357 6.596888 CCATCTTGCATCTGAGAAAAGAAGTA 59.403 38.462 8.90 0.00 31.14 2.24
357 358 7.120285 CCATCTTGCATCTGAGAAAAGAAGTAA 59.880 37.037 8.90 0.00 31.14 2.24
358 359 8.509690 CATCTTGCATCTGAGAAAAGAAGTAAA 58.490 33.333 8.90 0.00 31.14 2.01
359 360 8.450578 TCTTGCATCTGAGAAAAGAAGTAAAA 57.549 30.769 3.91 0.00 0.00 1.52
360 361 8.902806 TCTTGCATCTGAGAAAAGAAGTAAAAA 58.097 29.630 3.91 0.00 0.00 1.94
394 395 4.482952 AAAATTAGCACCGTAGCCTACT 57.517 40.909 0.00 0.00 34.23 2.57
395 396 3.454371 AATTAGCACCGTAGCCTACTG 57.546 47.619 0.00 0.00 34.23 2.74
396 397 2.133281 TTAGCACCGTAGCCTACTGA 57.867 50.000 0.00 0.00 34.23 3.41
397 398 1.386533 TAGCACCGTAGCCTACTGAC 58.613 55.000 0.00 0.00 34.23 3.51
398 399 1.226603 GCACCGTAGCCTACTGACG 60.227 63.158 0.00 0.00 36.36 4.35
399 400 1.651240 GCACCGTAGCCTACTGACGA 61.651 60.000 0.00 0.00 38.88 4.20
400 401 0.377554 CACCGTAGCCTACTGACGAG 59.622 60.000 0.00 0.00 38.88 4.18
401 402 1.355916 CCGTAGCCTACTGACGAGC 59.644 63.158 0.00 0.00 38.88 5.03
402 403 1.011019 CGTAGCCTACTGACGAGCG 60.011 63.158 0.00 0.00 38.88 5.03
403 404 1.298488 GTAGCCTACTGACGAGCGC 60.298 63.158 0.00 0.00 0.00 5.92
404 405 2.478890 TAGCCTACTGACGAGCGCC 61.479 63.158 2.29 0.00 0.00 6.53
405 406 4.129737 GCCTACTGACGAGCGCCA 62.130 66.667 2.29 0.00 0.00 5.69
406 407 2.202623 CCTACTGACGAGCGCCAC 60.203 66.667 2.29 0.00 0.00 5.01
407 408 2.701780 CCTACTGACGAGCGCCACT 61.702 63.158 2.29 0.00 0.00 4.00
408 409 1.213013 CTACTGACGAGCGCCACTT 59.787 57.895 2.29 0.00 0.00 3.16
409 410 0.388649 CTACTGACGAGCGCCACTTT 60.389 55.000 2.29 0.00 0.00 2.66
410 411 0.883153 TACTGACGAGCGCCACTTTA 59.117 50.000 2.29 0.00 0.00 1.85
411 412 0.666577 ACTGACGAGCGCCACTTTAC 60.667 55.000 2.29 0.00 0.00 2.01
412 413 0.666274 CTGACGAGCGCCACTTTACA 60.666 55.000 2.29 0.00 0.00 2.41
413 414 0.037697 TGACGAGCGCCACTTTACAT 60.038 50.000 2.29 0.00 0.00 2.29
414 415 1.202817 TGACGAGCGCCACTTTACATA 59.797 47.619 2.29 0.00 0.00 2.29
415 416 2.264813 GACGAGCGCCACTTTACATAA 58.735 47.619 2.29 0.00 0.00 1.90
416 417 1.997606 ACGAGCGCCACTTTACATAAC 59.002 47.619 2.29 0.00 0.00 1.89
417 418 1.326548 CGAGCGCCACTTTACATAACC 59.673 52.381 2.29 0.00 0.00 2.85
418 419 1.669265 GAGCGCCACTTTACATAACCC 59.331 52.381 2.29 0.00 0.00 4.11
419 420 0.736636 GCGCCACTTTACATAACCCC 59.263 55.000 0.00 0.00 0.00 4.95
420 421 1.385528 CGCCACTTTACATAACCCCC 58.614 55.000 0.00 0.00 0.00 5.40
448 449 2.430248 AAATACATGGGGTTCGGACC 57.570 50.000 3.45 3.45 45.75 4.46
458 459 2.773993 GGTTCGGACCACCATCTAAA 57.226 50.000 8.43 0.00 45.77 1.85
459 460 3.062122 GGTTCGGACCACCATCTAAAA 57.938 47.619 8.43 0.00 45.77 1.52
460 461 3.414269 GGTTCGGACCACCATCTAAAAA 58.586 45.455 8.43 0.00 45.77 1.94
494 495 8.655935 AAAAATTCACACCTCCATCTAGAAAT 57.344 30.769 0.00 0.00 0.00 2.17
495 496 8.655935 AAAATTCACACCTCCATCTAGAAATT 57.344 30.769 0.00 0.00 0.00 1.82
496 497 9.753674 AAAATTCACACCTCCATCTAGAAATTA 57.246 29.630 0.00 0.00 0.00 1.40
497 498 9.927081 AAATTCACACCTCCATCTAGAAATTAT 57.073 29.630 0.00 0.00 0.00 1.28
498 499 9.927081 AATTCACACCTCCATCTAGAAATTATT 57.073 29.630 0.00 0.00 0.00 1.40
499 500 8.964476 TTCACACCTCCATCTAGAAATTATTC 57.036 34.615 0.00 0.00 35.70 1.75
500 501 7.509546 TCACACCTCCATCTAGAAATTATTCC 58.490 38.462 0.00 0.00 36.12 3.01
501 502 7.127186 TCACACCTCCATCTAGAAATTATTCCA 59.873 37.037 0.00 0.00 36.12 3.53
502 503 7.775093 CACACCTCCATCTAGAAATTATTCCAA 59.225 37.037 0.00 0.00 36.12 3.53
503 504 8.336235 ACACCTCCATCTAGAAATTATTCCAAA 58.664 33.333 0.00 0.00 36.12 3.28
504 505 9.189156 CACCTCCATCTAGAAATTATTCCAAAA 57.811 33.333 0.00 0.00 36.12 2.44
505 506 9.413734 ACCTCCATCTAGAAATTATTCCAAAAG 57.586 33.333 0.00 0.00 36.12 2.27
506 507 8.355913 CCTCCATCTAGAAATTATTCCAAAAGC 58.644 37.037 0.00 0.00 36.12 3.51
507 508 9.129532 CTCCATCTAGAAATTATTCCAAAAGCT 57.870 33.333 0.00 0.00 36.12 3.74
508 509 9.479549 TCCATCTAGAAATTATTCCAAAAGCTT 57.520 29.630 0.00 0.00 36.12 3.74
515 516 8.090831 AGAAATTATTCCAAAAGCTTTCTCACC 58.909 33.333 13.10 0.00 36.12 4.02
516 517 6.916360 ATTATTCCAAAAGCTTTCTCACCA 57.084 33.333 13.10 0.00 0.00 4.17
517 518 6.916360 TTATTCCAAAAGCTTTCTCACCAT 57.084 33.333 13.10 3.34 0.00 3.55
518 519 4.589216 TTCCAAAAGCTTTCTCACCATG 57.411 40.909 13.10 4.99 0.00 3.66
519 520 2.892852 TCCAAAAGCTTTCTCACCATGG 59.107 45.455 13.10 11.19 0.00 3.66
520 521 2.611224 CCAAAAGCTTTCTCACCATGGC 60.611 50.000 13.10 0.00 0.00 4.40
521 522 1.260544 AAAGCTTTCTCACCATGGCC 58.739 50.000 13.04 0.00 0.00 5.36
522 523 0.112995 AAGCTTTCTCACCATGGCCA 59.887 50.000 13.04 8.56 0.00 5.36
523 524 0.112995 AGCTTTCTCACCATGGCCAA 59.887 50.000 10.96 0.00 0.00 4.52
524 525 0.244721 GCTTTCTCACCATGGCCAAC 59.755 55.000 10.96 0.00 0.00 3.77
525 526 0.890683 CTTTCTCACCATGGCCAACC 59.109 55.000 10.96 0.00 0.00 3.77
537 538 4.347453 CCAACCAGCTTGCGCCAC 62.347 66.667 4.18 0.00 36.60 5.01
538 539 4.688419 CAACCAGCTTGCGCCACG 62.688 66.667 4.18 0.00 36.60 4.94
552 553 3.760693 CCACGTGGCATAGCTAGTT 57.239 52.632 24.02 0.00 0.00 2.24
553 554 1.290203 CCACGTGGCATAGCTAGTTG 58.710 55.000 24.02 0.00 0.00 3.16
554 555 1.290203 CACGTGGCATAGCTAGTTGG 58.710 55.000 7.95 0.00 0.00 3.77
555 556 0.462047 ACGTGGCATAGCTAGTTGGC 60.462 55.000 12.68 12.68 38.77 4.52
556 557 1.160329 CGTGGCATAGCTAGTTGGCC 61.160 60.000 15.91 16.53 44.82 5.36
558 559 2.707902 GGCATAGCTAGTTGGCCAC 58.292 57.895 3.88 0.00 44.01 5.01
559 560 0.819666 GGCATAGCTAGTTGGCCACC 60.820 60.000 3.88 0.00 44.01 4.61
560 561 0.107214 GCATAGCTAGTTGGCCACCA 60.107 55.000 3.88 0.00 0.00 4.17
561 562 1.681780 GCATAGCTAGTTGGCCACCAA 60.682 52.381 3.88 0.00 41.69 3.67
562 563 2.936202 CATAGCTAGTTGGCCACCAAT 58.064 47.619 3.88 0.00 45.80 3.16
563 564 2.710096 TAGCTAGTTGGCCACCAATC 57.290 50.000 3.88 0.00 45.80 2.67
564 565 0.995024 AGCTAGTTGGCCACCAATCT 59.005 50.000 3.88 1.66 45.80 2.40
565 566 1.065126 AGCTAGTTGGCCACCAATCTC 60.065 52.381 3.88 0.00 45.80 2.75
566 567 2.019156 GCTAGTTGGCCACCAATCTCC 61.019 57.143 3.88 0.00 45.80 3.71
567 568 1.561542 CTAGTTGGCCACCAATCTCCT 59.438 52.381 3.88 0.00 45.80 3.69
568 569 0.038744 AGTTGGCCACCAATCTCCTG 59.961 55.000 3.88 0.00 45.80 3.86
569 570 0.038166 GTTGGCCACCAATCTCCTGA 59.962 55.000 3.88 0.00 45.80 3.86
570 571 1.002069 TTGGCCACCAATCTCCTGAT 58.998 50.000 3.88 0.00 38.75 2.90
571 572 0.256752 TGGCCACCAATCTCCTGATG 59.743 55.000 0.00 0.00 32.44 3.07
572 573 1.105759 GGCCACCAATCTCCTGATGC 61.106 60.000 0.00 0.00 32.44 3.91
573 574 0.106819 GCCACCAATCTCCTGATGCT 60.107 55.000 0.00 0.00 32.44 3.79
574 575 1.684248 GCCACCAATCTCCTGATGCTT 60.684 52.381 0.00 0.00 32.44 3.91
575 576 2.421952 GCCACCAATCTCCTGATGCTTA 60.422 50.000 0.00 0.00 32.44 3.09
576 577 3.889815 CCACCAATCTCCTGATGCTTAA 58.110 45.455 0.00 0.00 32.44 1.85
577 578 4.467769 CCACCAATCTCCTGATGCTTAAT 58.532 43.478 0.00 0.00 32.44 1.40
578 579 4.277672 CCACCAATCTCCTGATGCTTAATG 59.722 45.833 0.00 0.00 32.44 1.90
579 580 4.277672 CACCAATCTCCTGATGCTTAATGG 59.722 45.833 0.00 0.00 32.31 3.16
580 581 3.825014 CCAATCTCCTGATGCTTAATGGG 59.175 47.826 0.00 0.00 32.44 4.00
581 582 4.467769 CAATCTCCTGATGCTTAATGGGT 58.532 43.478 0.00 0.00 32.44 4.51
582 583 4.803329 ATCTCCTGATGCTTAATGGGTT 57.197 40.909 0.00 0.00 0.00 4.11
583 584 4.591321 TCTCCTGATGCTTAATGGGTTT 57.409 40.909 0.00 0.00 0.00 3.27
584 585 5.708736 TCTCCTGATGCTTAATGGGTTTA 57.291 39.130 0.00 0.00 0.00 2.01
585 586 6.073447 TCTCCTGATGCTTAATGGGTTTAA 57.927 37.500 0.00 0.00 0.00 1.52
586 587 6.672593 TCTCCTGATGCTTAATGGGTTTAAT 58.327 36.000 0.00 0.00 0.00 1.40
587 588 6.772716 TCTCCTGATGCTTAATGGGTTTAATC 59.227 38.462 0.00 0.00 0.00 1.75
588 589 5.833131 TCCTGATGCTTAATGGGTTTAATCC 59.167 40.000 0.00 0.00 0.00 3.01
589 590 5.598005 CCTGATGCTTAATGGGTTTAATCCA 59.402 40.000 0.00 0.00 38.82 3.41
590 591 6.461509 CCTGATGCTTAATGGGTTTAATCCAC 60.462 42.308 0.00 0.00 37.08 4.02
591 592 5.954752 TGATGCTTAATGGGTTTAATCCACA 59.045 36.000 0.00 0.00 37.08 4.17
592 593 5.652994 TGCTTAATGGGTTTAATCCACAC 57.347 39.130 0.00 0.00 37.08 3.82
593 594 4.464597 TGCTTAATGGGTTTAATCCACACC 59.535 41.667 0.00 0.00 37.08 4.16
594 595 4.709886 GCTTAATGGGTTTAATCCACACCT 59.290 41.667 0.00 0.00 37.08 4.00
595 596 5.163550 GCTTAATGGGTTTAATCCACACCTC 60.164 44.000 0.00 0.00 37.08 3.85
596 597 2.891191 TGGGTTTAATCCACACCTCC 57.109 50.000 0.00 0.00 0.00 4.30
597 598 2.066592 TGGGTTTAATCCACACCTCCA 58.933 47.619 0.00 0.00 0.00 3.86
598 599 2.652348 TGGGTTTAATCCACACCTCCAT 59.348 45.455 0.00 0.00 0.00 3.41
599 600 3.288092 GGGTTTAATCCACACCTCCATC 58.712 50.000 4.97 0.00 0.00 3.51
600 601 3.053619 GGGTTTAATCCACACCTCCATCT 60.054 47.826 4.97 0.00 0.00 2.90
601 602 4.165372 GGGTTTAATCCACACCTCCATCTA 59.835 45.833 4.97 0.00 0.00 1.98
602 603 5.339695 GGGTTTAATCCACACCTCCATCTAA 60.340 44.000 4.97 0.00 0.00 2.10
603 604 6.184789 GGTTTAATCCACACCTCCATCTAAA 58.815 40.000 0.00 0.00 0.00 1.85
604 605 6.318900 GGTTTAATCCACACCTCCATCTAAAG 59.681 42.308 0.00 0.00 0.00 1.85
605 606 6.884472 TTAATCCACACCTCCATCTAAAGA 57.116 37.500 0.00 0.00 0.00 2.52
606 607 5.983333 AATCCACACCTCCATCTAAAGAT 57.017 39.130 0.00 0.00 34.56 2.40
607 608 5.983333 ATCCACACCTCCATCTAAAGATT 57.017 39.130 0.00 0.00 31.21 2.40
608 609 5.779241 TCCACACCTCCATCTAAAGATTT 57.221 39.130 0.00 0.00 31.21 2.17
609 610 6.139679 TCCACACCTCCATCTAAAGATTTT 57.860 37.500 0.00 0.00 31.21 1.82
610 611 6.552008 TCCACACCTCCATCTAAAGATTTTT 58.448 36.000 0.00 0.00 31.21 1.94
611 612 6.659242 TCCACACCTCCATCTAAAGATTTTTC 59.341 38.462 0.00 0.00 31.21 2.29
612 613 6.127619 CCACACCTCCATCTAAAGATTTTTCC 60.128 42.308 0.00 0.00 31.21 3.13
613 614 6.434028 CACACCTCCATCTAAAGATTTTTCCA 59.566 38.462 0.00 0.00 31.21 3.53
614 615 7.010160 ACACCTCCATCTAAAGATTTTTCCAA 58.990 34.615 0.00 0.00 31.21 3.53
615 616 7.508977 ACACCTCCATCTAAAGATTTTTCCAAA 59.491 33.333 0.00 0.00 31.21 3.28
616 617 8.367156 CACCTCCATCTAAAGATTTTTCCAAAA 58.633 33.333 0.00 0.00 31.21 2.44
617 618 8.588472 ACCTCCATCTAAAGATTTTTCCAAAAG 58.412 33.333 0.00 0.00 31.21 2.27
618 619 7.547019 CCTCCATCTAAAGATTTTTCCAAAAGC 59.453 37.037 0.00 0.00 31.21 3.51
619 620 8.193953 TCCATCTAAAGATTTTTCCAAAAGCT 57.806 30.769 0.00 0.00 31.21 3.74
620 621 8.650490 TCCATCTAAAGATTTTTCCAAAAGCTT 58.350 29.630 6.64 6.64 31.21 3.74
621 622 9.276590 CCATCTAAAGATTTTTCCAAAAGCTTT 57.723 29.630 22.01 22.01 37.69 3.51
624 625 9.750125 TCTAAAGATTTTTCCAAAAGCTTTCTC 57.250 29.630 22.00 0.43 36.56 2.87
625 626 9.533253 CTAAAGATTTTTCCAAAAGCTTTCTCA 57.467 29.630 22.00 9.64 36.56 3.27
626 627 7.776933 AAGATTTTTCCAAAAGCTTTCTCAC 57.223 32.000 13.10 0.00 0.00 3.51
627 628 6.283694 AGATTTTTCCAAAAGCTTTCTCACC 58.716 36.000 13.10 0.00 0.00 4.02
628 629 5.413309 TTTTTCCAAAAGCTTTCTCACCA 57.587 34.783 13.10 0.00 0.00 4.17
629 630 4.385358 TTTCCAAAAGCTTTCTCACCAC 57.615 40.909 13.10 0.00 0.00 4.16
630 631 1.946768 TCCAAAAGCTTTCTCACCACG 59.053 47.619 13.10 0.00 0.00 4.94
631 632 1.001378 CCAAAAGCTTTCTCACCACGG 60.001 52.381 13.10 0.00 0.00 4.94
632 633 0.668535 AAAAGCTTTCTCACCACGGC 59.331 50.000 13.10 0.00 0.00 5.68
633 634 1.172812 AAAGCTTTCTCACCACGGCC 61.173 55.000 5.69 0.00 0.00 6.13
634 635 2.281484 GCTTTCTCACCACGGCCA 60.281 61.111 2.24 0.00 0.00 5.36
635 636 1.896660 GCTTTCTCACCACGGCCAA 60.897 57.895 2.24 0.00 0.00 4.52
636 637 1.949257 CTTTCTCACCACGGCCAAC 59.051 57.895 2.24 0.00 0.00 3.77
637 638 1.515521 CTTTCTCACCACGGCCAACC 61.516 60.000 2.24 0.00 0.00 3.77
638 639 2.272230 TTTCTCACCACGGCCAACCA 62.272 55.000 2.24 0.00 34.57 3.67
639 640 2.669569 CTCACCACGGCCAACCAG 60.670 66.667 2.24 0.00 34.57 4.00
640 641 4.947147 TCACCACGGCCAACCAGC 62.947 66.667 2.24 0.00 34.57 4.85
641 642 4.954970 CACCACGGCCAACCAGCT 62.955 66.667 2.24 0.00 34.57 4.24
642 643 4.204028 ACCACGGCCAACCAGCTT 62.204 61.111 2.24 0.00 34.57 3.74
643 644 3.673484 CCACGGCCAACCAGCTTG 61.673 66.667 2.24 0.00 34.57 4.01
644 645 4.347453 CACGGCCAACCAGCTTGC 62.347 66.667 2.24 0.00 34.57 4.01
649 650 3.376078 CCAACCAGCTTGCGCCAT 61.376 61.111 4.18 0.00 36.60 4.40
650 651 2.126228 CAACCAGCTTGCGCCATG 60.126 61.111 4.18 0.00 36.60 3.66
651 652 2.598394 AACCAGCTTGCGCCATGT 60.598 55.556 4.18 0.00 36.60 3.21
652 653 2.922950 AACCAGCTTGCGCCATGTG 61.923 57.895 4.18 0.00 36.60 3.21
653 654 4.124351 CCAGCTTGCGCCATGTGG 62.124 66.667 4.18 2.86 36.60 4.17
663 664 4.993307 CCATGTGGCATAGCTGGT 57.007 55.556 0.00 0.00 0.00 4.00
664 665 3.196040 CCATGTGGCATAGCTGGTT 57.804 52.632 0.00 0.00 0.00 3.67
665 666 0.742505 CCATGTGGCATAGCTGGTTG 59.257 55.000 0.00 0.00 0.00 3.77
666 667 0.742505 CATGTGGCATAGCTGGTTGG 59.257 55.000 0.00 0.00 0.00 3.77
667 668 1.039233 ATGTGGCATAGCTGGTTGGC 61.039 55.000 0.00 4.54 38.77 4.52
668 669 2.044053 TGGCATAGCTGGTTGGCC 60.044 61.111 14.30 12.70 44.82 5.36
669 670 3.211963 GGCATAGCTGGTTGGCCG 61.212 66.667 0.00 0.00 37.67 6.13
670 671 3.892581 GCATAGCTGGTTGGCCGC 61.893 66.667 0.00 0.00 37.67 6.53
671 672 3.211963 CATAGCTGGTTGGCCGCC 61.212 66.667 1.04 1.04 37.67 6.13
672 673 3.727258 ATAGCTGGTTGGCCGCCA 61.727 61.111 8.43 8.43 37.67 5.69
673 674 3.280938 ATAGCTGGTTGGCCGCCAA 62.281 57.895 21.31 21.31 41.69 4.52
674 675 2.572333 ATAGCTGGTTGGCCGCCAAT 62.572 55.000 27.27 13.74 45.80 3.16
675 676 4.133796 GCTGGTTGGCCGCCAATC 62.134 66.667 27.27 26.63 45.80 2.67
676 677 2.361610 CTGGTTGGCCGCCAATCT 60.362 61.111 30.86 0.00 45.80 2.40
677 678 2.361104 TGGTTGGCCGCCAATCTC 60.361 61.111 30.86 21.26 45.80 2.75
678 679 3.140814 GGTTGGCCGCCAATCTCC 61.141 66.667 27.27 19.59 45.80 3.71
679 680 3.140814 GTTGGCCGCCAATCTCCC 61.141 66.667 27.27 10.82 45.80 4.30
680 681 4.794648 TTGGCCGCCAATCTCCCG 62.795 66.667 21.31 0.00 38.75 5.14
682 683 4.256180 GGCCGCCAATCTCCCGAT 62.256 66.667 3.91 0.00 0.00 4.18
683 684 2.974698 GCCGCCAATCTCCCGATG 60.975 66.667 0.00 0.00 0.00 3.84
684 685 2.974698 CCGCCAATCTCCCGATGC 60.975 66.667 0.00 0.00 0.00 3.91
685 686 2.109799 CGCCAATCTCCCGATGCT 59.890 61.111 0.00 0.00 0.00 3.79
686 687 1.524621 CGCCAATCTCCCGATGCTT 60.525 57.895 0.00 0.00 0.00 3.91
687 688 0.249868 CGCCAATCTCCCGATGCTTA 60.250 55.000 0.00 0.00 0.00 3.09
688 689 1.810031 CGCCAATCTCCCGATGCTTAA 60.810 52.381 0.00 0.00 0.00 1.85
689 690 2.508526 GCCAATCTCCCGATGCTTAAT 58.491 47.619 0.00 0.00 0.00 1.40
690 691 2.227388 GCCAATCTCCCGATGCTTAATG 59.773 50.000 0.00 0.00 0.00 1.90
691 692 2.816087 CCAATCTCCCGATGCTTAATGG 59.184 50.000 0.00 0.00 0.00 3.16
692 693 2.816087 CAATCTCCCGATGCTTAATGGG 59.184 50.000 0.00 0.00 43.36 4.00
693 694 1.507140 TCTCCCGATGCTTAATGGGT 58.493 50.000 0.00 0.00 42.54 4.51
694 695 1.843851 TCTCCCGATGCTTAATGGGTT 59.156 47.619 0.00 0.00 42.54 4.11
695 696 2.241176 TCTCCCGATGCTTAATGGGTTT 59.759 45.455 0.00 0.00 42.54 3.27
696 697 3.456644 TCTCCCGATGCTTAATGGGTTTA 59.543 43.478 0.00 0.00 42.54 2.01
697 698 4.080243 TCTCCCGATGCTTAATGGGTTTAA 60.080 41.667 0.00 0.00 42.54 1.52
698 699 4.798882 TCCCGATGCTTAATGGGTTTAAT 58.201 39.130 0.00 0.00 42.54 1.40
699 700 5.205056 TCCCGATGCTTAATGGGTTTAATT 58.795 37.500 0.00 0.00 42.54 1.40
700 701 6.366340 TCCCGATGCTTAATGGGTTTAATTA 58.634 36.000 0.00 0.00 42.54 1.40
723 724 0.242017 GGCTGTGTGATGACCTTTGC 59.758 55.000 0.00 0.00 0.00 3.68
774 775 9.023962 ACATGAGCTTGGTTTCTATTGATAAAA 57.976 29.630 0.00 0.00 0.00 1.52
862 975 7.885399 AGTAAAGTGAATGAAAGTATGAAGGCT 59.115 33.333 0.00 0.00 0.00 4.58
886 999 6.614694 ACTATACCACACAGACCATACAAA 57.385 37.500 0.00 0.00 0.00 2.83
887 1000 6.403878 ACTATACCACACAGACCATACAAAC 58.596 40.000 0.00 0.00 0.00 2.93
898 1011 6.183360 ACAGACCATACAAACCACAAGAAAAG 60.183 38.462 0.00 0.00 0.00 2.27
937 1050 3.703420 CGCTACGGCTATCTACAGTTTT 58.297 45.455 0.00 0.00 36.09 2.43
959 1072 2.744741 CTCTGCAGTCTCTTCGTGTCTA 59.255 50.000 14.67 0.00 0.00 2.59
960 1073 3.348119 TCTGCAGTCTCTTCGTGTCTAT 58.652 45.455 14.67 0.00 0.00 1.98
961 1074 3.759086 TCTGCAGTCTCTTCGTGTCTATT 59.241 43.478 14.67 0.00 0.00 1.73
964 1077 4.923871 TGCAGTCTCTTCGTGTCTATTTTC 59.076 41.667 0.00 0.00 0.00 2.29
965 1078 4.327627 GCAGTCTCTTCGTGTCTATTTTCC 59.672 45.833 0.00 0.00 0.00 3.13
966 1079 5.715070 CAGTCTCTTCGTGTCTATTTTCCT 58.285 41.667 0.00 0.00 0.00 3.36
968 1081 5.103687 GTCTCTTCGTGTCTATTTTCCTCC 58.896 45.833 0.00 0.00 0.00 4.30
970 1083 2.953466 TCGTGTCTATTTTCCTCCCG 57.047 50.000 0.00 0.00 0.00 5.14
972 1085 1.287425 GTGTCTATTTTCCTCCCGCG 58.713 55.000 0.00 0.00 0.00 6.46
973 1086 0.461339 TGTCTATTTTCCTCCCGCGC 60.461 55.000 0.00 0.00 0.00 6.86
974 1087 1.227147 TCTATTTTCCTCCCGCGCG 60.227 57.895 25.67 25.67 0.00 6.86
975 1088 2.882366 CTATTTTCCTCCCGCGCGC 61.882 63.158 27.36 23.91 0.00 6.86
1204 1322 2.184020 CTTCAGCATCCGGGTCACCA 62.184 60.000 0.00 0.00 36.13 4.17
1371 1489 2.093764 CGTCTGCAGAGGAAGAAAGGAT 60.094 50.000 28.24 0.00 27.67 3.24
1372 1490 3.618507 CGTCTGCAGAGGAAGAAAGGATT 60.619 47.826 28.24 0.00 27.67 3.01
1373 1491 3.688673 GTCTGCAGAGGAAGAAAGGATTG 59.311 47.826 18.89 0.00 27.67 2.67
1374 1492 3.015327 CTGCAGAGGAAGAAAGGATTGG 58.985 50.000 8.42 0.00 0.00 3.16
1375 1493 2.376518 TGCAGAGGAAGAAAGGATTGGT 59.623 45.455 0.00 0.00 0.00 3.67
1376 1494 3.587061 TGCAGAGGAAGAAAGGATTGGTA 59.413 43.478 0.00 0.00 0.00 3.25
1377 1495 4.042809 TGCAGAGGAAGAAAGGATTGGTAA 59.957 41.667 0.00 0.00 0.00 2.85
1441 1559 2.386661 ACAGGCCTACGATGAACAAG 57.613 50.000 3.98 0.00 0.00 3.16
1453 1571 3.125316 CGATGAACAAGTTAGAACAGGGC 59.875 47.826 0.00 0.00 0.00 5.19
1504 1622 5.475719 TGATCTTCGTAGGGTAGTTTTGTG 58.524 41.667 0.00 0.00 0.00 3.33
1558 1676 1.687494 GCAGAACGCCGAAGCTGTAG 61.687 60.000 0.00 0.00 36.60 2.74
1588 1706 2.571216 CCGGGTCACTTGTCCTCGT 61.571 63.158 0.00 0.00 0.00 4.18
1606 1724 1.000163 CGTATGGCGTATTCAGGAGCT 60.000 52.381 0.00 0.00 35.54 4.09
1608 1726 3.670895 CGTATGGCGTATTCAGGAGCTAG 60.671 52.174 0.00 0.00 35.54 3.42
1635 1753 3.437049 CCTCTGCAGGTAAAAACTACAGC 59.563 47.826 15.13 0.00 34.60 4.40
1638 1756 3.670625 TGCAGGTAAAAACTACAGCGAT 58.329 40.909 0.00 0.00 0.00 4.58
1644 1762 7.136119 CAGGTAAAAACTACAGCGATCAAAAA 58.864 34.615 0.00 0.00 0.00 1.94
1770 2193 6.234177 AGTTCAAAGGATCAGACAAACTAGG 58.766 40.000 0.00 0.00 0.00 3.02
1779 2202 8.606830 AGGATCAGACAAACTAGGATTTTAGTT 58.393 33.333 0.00 0.00 43.77 2.24
1844 2296 3.813443 ACATATAGCAAAGCAGACAGGG 58.187 45.455 0.00 0.00 0.00 4.45
1846 2298 2.887151 ATAGCAAAGCAGACAGGGTT 57.113 45.000 0.00 0.00 0.00 4.11
1960 2412 3.577805 ATTTTCGGGGTAAGATCCTGG 57.422 47.619 0.00 0.00 0.00 4.45
2071 2523 6.037062 CACCAATGCAAATATTCACTCGAGTA 59.963 38.462 19.57 3.69 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.559958 CGTGCAAAAAGAAGAAGACAAATATAT 57.440 29.630 0.00 0.00 0.00 0.86
1 2 7.537306 GCGTGCAAAAAGAAGAAGACAAATATA 59.463 33.333 0.00 0.00 0.00 0.86
2 3 6.363357 GCGTGCAAAAAGAAGAAGACAAATAT 59.637 34.615 0.00 0.00 0.00 1.28
13 14 0.248458 ACGTGGCGTGCAAAAAGAAG 60.248 50.000 0.00 0.00 39.18 2.85
25 26 2.344441 CAGTATACTTTCACACGTGGCG 59.656 50.000 21.57 10.79 0.00 5.69
26 27 3.323243 ACAGTATACTTTCACACGTGGC 58.677 45.455 21.57 0.00 0.00 5.01
66 67 8.138712 TGAACACTCATACGCATATGTATTACA 58.861 33.333 4.29 0.00 39.48 2.41
67 68 8.425491 GTGAACACTCATACGCATATGTATTAC 58.575 37.037 4.29 0.00 39.48 1.89
72 73 4.754322 TGTGAACACTCATACGCATATGT 58.246 39.130 4.29 0.00 39.48 2.29
73 74 5.717038 TTGTGAACACTCATACGCATATG 57.283 39.130 0.00 0.00 39.79 1.78
111 112 3.664107 AGTGCAATTTTCTAGAGCGTGA 58.336 40.909 0.00 0.00 0.00 4.35
112 113 4.410492 AAGTGCAATTTTCTAGAGCGTG 57.590 40.909 0.00 0.00 0.00 5.34
113 114 4.515191 TCAAAGTGCAATTTTCTAGAGCGT 59.485 37.500 9.83 0.00 0.00 5.07
114 115 5.034554 TCAAAGTGCAATTTTCTAGAGCG 57.965 39.130 9.83 0.00 0.00 5.03
115 116 7.558991 GTTTTCAAAGTGCAATTTTCTAGAGC 58.441 34.615 9.83 0.00 0.00 4.09
116 117 7.643764 TCGTTTTCAAAGTGCAATTTTCTAGAG 59.356 33.333 9.83 0.00 0.00 2.43
117 118 7.476667 TCGTTTTCAAAGTGCAATTTTCTAGA 58.523 30.769 9.83 1.20 0.00 2.43
118 119 7.565789 GCTCGTTTTCAAAGTGCAATTTTCTAG 60.566 37.037 9.83 0.00 0.00 2.43
131 132 3.971032 ACAAGGAGCTCGTTTTCAAAG 57.029 42.857 18.66 9.27 0.00 2.77
139 140 0.526662 CCGAGTTACAAGGAGCTCGT 59.473 55.000 15.74 5.12 46.30 4.18
153 154 0.038159 CGAGCTTTTGGAGACCGAGT 60.038 55.000 0.00 0.00 0.00 4.18
204 205 1.772567 TGGCACCCCAACCACTAGT 60.773 57.895 0.00 0.00 38.46 2.57
205 206 3.166434 TGGCACCCCAACCACTAG 58.834 61.111 0.00 0.00 38.46 2.57
223 224 4.641645 TCAAGCGGCACCACAGGG 62.642 66.667 1.45 0.00 41.29 4.45
224 225 3.052082 CTCAAGCGGCACCACAGG 61.052 66.667 1.45 0.00 0.00 4.00
225 226 2.031012 TCTCAAGCGGCACCACAG 59.969 61.111 1.45 0.00 0.00 3.66
226 227 2.031012 CTCTCAAGCGGCACCACA 59.969 61.111 1.45 0.00 0.00 4.17
227 228 0.884704 TTTCTCTCAAGCGGCACCAC 60.885 55.000 1.45 0.00 0.00 4.16
228 229 0.179032 TTTTCTCTCAAGCGGCACCA 60.179 50.000 1.45 0.00 0.00 4.17
229 230 1.168714 ATTTTCTCTCAAGCGGCACC 58.831 50.000 1.45 0.00 0.00 5.01
230 231 2.030805 ACAATTTTCTCTCAAGCGGCAC 60.031 45.455 1.45 0.00 0.00 5.01
231 232 2.030893 CACAATTTTCTCTCAAGCGGCA 60.031 45.455 1.45 0.00 0.00 5.69
232 233 2.589014 CACAATTTTCTCTCAAGCGGC 58.411 47.619 0.00 0.00 0.00 6.53
233 234 2.589014 GCACAATTTTCTCTCAAGCGG 58.411 47.619 0.00 0.00 0.00 5.52
234 235 2.236690 CGCACAATTTTCTCTCAAGCG 58.763 47.619 0.00 0.00 36.62 4.68
235 236 2.975851 CACGCACAATTTTCTCTCAAGC 59.024 45.455 0.00 0.00 0.00 4.01
236 237 2.975851 GCACGCACAATTTTCTCTCAAG 59.024 45.455 0.00 0.00 0.00 3.02
237 238 2.601979 CGCACGCACAATTTTCTCTCAA 60.602 45.455 0.00 0.00 0.00 3.02
238 239 1.069973 CGCACGCACAATTTTCTCTCA 60.070 47.619 0.00 0.00 0.00 3.27
239 240 1.069906 ACGCACGCACAATTTTCTCTC 60.070 47.619 0.00 0.00 0.00 3.20
240 241 0.944386 ACGCACGCACAATTTTCTCT 59.056 45.000 0.00 0.00 0.00 3.10
241 242 1.753956 AACGCACGCACAATTTTCTC 58.246 45.000 0.00 0.00 0.00 2.87
242 243 2.202295 AAACGCACGCACAATTTTCT 57.798 40.000 0.00 0.00 0.00 2.52
243 244 2.280183 TGAAAACGCACGCACAATTTTC 59.720 40.909 8.16 8.16 38.93 2.29
244 245 2.263077 TGAAAACGCACGCACAATTTT 58.737 38.095 0.00 0.00 0.00 1.82
245 246 1.914634 TGAAAACGCACGCACAATTT 58.085 40.000 0.00 0.00 0.00 1.82
246 247 2.132740 ATGAAAACGCACGCACAATT 57.867 40.000 0.00 0.00 0.00 2.32
247 248 2.132740 AATGAAAACGCACGCACAAT 57.867 40.000 0.00 0.00 0.00 2.71
248 249 1.914634 AAATGAAAACGCACGCACAA 58.085 40.000 0.00 0.00 0.00 3.33
249 250 2.757686 TAAATGAAAACGCACGCACA 57.242 40.000 0.00 0.00 0.00 4.57
250 251 4.424476 TTTTAAATGAAAACGCACGCAC 57.576 36.364 0.00 0.00 31.90 5.34
270 271 1.073923 AGGCGAGGACCTCATGTTTTT 59.926 47.619 21.49 0.00 33.62 1.94
271 272 0.693049 AGGCGAGGACCTCATGTTTT 59.307 50.000 21.49 0.00 33.62 2.43
272 273 2.377136 AGGCGAGGACCTCATGTTT 58.623 52.632 21.49 0.00 33.62 2.83
273 274 4.136978 AGGCGAGGACCTCATGTT 57.863 55.556 21.49 0.86 33.62 2.71
279 280 1.775459 TGTAGATAGAGGCGAGGACCT 59.225 52.381 0.00 0.00 45.04 3.85
280 281 2.273538 TGTAGATAGAGGCGAGGACC 57.726 55.000 0.00 0.00 0.00 4.46
281 282 4.650754 TTTTGTAGATAGAGGCGAGGAC 57.349 45.455 0.00 0.00 0.00 3.85
317 318 3.766051 GCAAGATGGAGGTGAGGATTTTT 59.234 43.478 0.00 0.00 0.00 1.94
318 319 3.245371 TGCAAGATGGAGGTGAGGATTTT 60.245 43.478 0.00 0.00 0.00 1.82
319 320 2.309755 TGCAAGATGGAGGTGAGGATTT 59.690 45.455 0.00 0.00 0.00 2.17
320 321 1.918262 TGCAAGATGGAGGTGAGGATT 59.082 47.619 0.00 0.00 0.00 3.01
321 322 1.588239 TGCAAGATGGAGGTGAGGAT 58.412 50.000 0.00 0.00 0.00 3.24
322 323 1.487976 GATGCAAGATGGAGGTGAGGA 59.512 52.381 0.00 0.00 0.00 3.71
323 324 1.489649 AGATGCAAGATGGAGGTGAGG 59.510 52.381 0.00 0.00 0.00 3.86
324 325 2.169978 TCAGATGCAAGATGGAGGTGAG 59.830 50.000 0.00 0.00 0.00 3.51
325 326 2.169978 CTCAGATGCAAGATGGAGGTGA 59.830 50.000 0.00 0.00 0.00 4.02
326 327 2.169978 TCTCAGATGCAAGATGGAGGTG 59.830 50.000 0.00 0.00 0.00 4.00
327 328 2.475155 TCTCAGATGCAAGATGGAGGT 58.525 47.619 0.00 0.00 0.00 3.85
328 329 3.555527 TTCTCAGATGCAAGATGGAGG 57.444 47.619 0.00 0.00 0.00 4.30
329 330 5.183969 TCTTTTCTCAGATGCAAGATGGAG 58.816 41.667 0.00 0.00 0.00 3.86
330 331 5.169992 TCTTTTCTCAGATGCAAGATGGA 57.830 39.130 0.00 0.00 0.00 3.41
331 332 5.415077 ACTTCTTTTCTCAGATGCAAGATGG 59.585 40.000 0.00 0.00 0.00 3.51
332 333 6.497785 ACTTCTTTTCTCAGATGCAAGATG 57.502 37.500 0.00 0.00 0.00 2.90
333 334 8.627208 TTTACTTCTTTTCTCAGATGCAAGAT 57.373 30.769 0.00 0.00 0.00 2.40
334 335 8.450578 TTTTACTTCTTTTCTCAGATGCAAGA 57.549 30.769 0.00 0.00 0.00 3.02
372 373 4.634443 CAGTAGGCTACGGTGCTAATTTTT 59.366 41.667 18.41 0.00 0.00 1.94
373 374 4.081309 TCAGTAGGCTACGGTGCTAATTTT 60.081 41.667 21.44 0.00 0.00 1.82
374 375 3.449737 TCAGTAGGCTACGGTGCTAATTT 59.550 43.478 21.44 0.00 0.00 1.82
375 376 3.028850 TCAGTAGGCTACGGTGCTAATT 58.971 45.455 21.44 0.00 0.00 1.40
376 377 2.361438 GTCAGTAGGCTACGGTGCTAAT 59.639 50.000 21.44 0.00 0.00 1.73
377 378 1.747355 GTCAGTAGGCTACGGTGCTAA 59.253 52.381 21.44 2.33 0.00 3.09
378 379 1.386533 GTCAGTAGGCTACGGTGCTA 58.613 55.000 21.44 2.68 0.00 3.49
379 380 1.654954 CGTCAGTAGGCTACGGTGCT 61.655 60.000 21.44 1.33 33.13 4.40
380 381 1.226603 CGTCAGTAGGCTACGGTGC 60.227 63.158 21.44 15.16 33.13 5.01
381 382 0.377554 CTCGTCAGTAGGCTACGGTG 59.622 60.000 21.44 14.50 37.24 4.94
382 383 1.375098 GCTCGTCAGTAGGCTACGGT 61.375 60.000 21.44 2.78 37.24 4.83
383 384 1.355916 GCTCGTCAGTAGGCTACGG 59.644 63.158 18.41 17.84 37.24 4.02
384 385 1.011019 CGCTCGTCAGTAGGCTACG 60.011 63.158 18.41 10.03 37.96 3.51
385 386 1.298488 GCGCTCGTCAGTAGGCTAC 60.298 63.158 16.93 16.93 0.00 3.58
386 387 2.478890 GGCGCTCGTCAGTAGGCTA 61.479 63.158 7.64 0.00 0.00 3.93
387 388 3.827898 GGCGCTCGTCAGTAGGCT 61.828 66.667 7.64 0.00 0.00 4.58
388 389 4.129737 TGGCGCTCGTCAGTAGGC 62.130 66.667 7.64 0.00 0.00 3.93
389 390 2.202623 GTGGCGCTCGTCAGTAGG 60.203 66.667 7.64 0.00 0.00 3.18
390 391 0.388649 AAAGTGGCGCTCGTCAGTAG 60.389 55.000 7.64 0.00 32.50 2.57
391 392 0.883153 TAAAGTGGCGCTCGTCAGTA 59.117 50.000 7.64 0.00 32.50 2.74
392 393 0.666577 GTAAAGTGGCGCTCGTCAGT 60.667 55.000 7.64 0.00 34.49 3.41
393 394 0.666274 TGTAAAGTGGCGCTCGTCAG 60.666 55.000 7.64 0.00 0.00 3.51
394 395 0.037697 ATGTAAAGTGGCGCTCGTCA 60.038 50.000 7.64 1.21 0.00 4.35
395 396 1.917273 TATGTAAAGTGGCGCTCGTC 58.083 50.000 7.64 0.00 0.00 4.20
396 397 1.997606 GTTATGTAAAGTGGCGCTCGT 59.002 47.619 7.64 0.00 0.00 4.18
397 398 1.326548 GGTTATGTAAAGTGGCGCTCG 59.673 52.381 7.64 0.00 0.00 5.03
398 399 1.669265 GGGTTATGTAAAGTGGCGCTC 59.331 52.381 7.64 0.45 0.00 5.03
399 400 1.680860 GGGGTTATGTAAAGTGGCGCT 60.681 52.381 7.64 0.00 0.00 5.92
400 401 0.736636 GGGGTTATGTAAAGTGGCGC 59.263 55.000 0.00 0.00 0.00 6.53
401 402 1.385528 GGGGGTTATGTAAAGTGGCG 58.614 55.000 0.00 0.00 0.00 5.69
427 428 3.093814 GGTCCGAACCCCATGTATTTTT 58.906 45.455 0.00 0.00 39.93 1.94
428 429 2.041891 TGGTCCGAACCCCATGTATTTT 59.958 45.455 0.00 0.00 45.83 1.82
429 430 1.636519 TGGTCCGAACCCCATGTATTT 59.363 47.619 0.00 0.00 45.83 1.40
430 431 1.064979 GTGGTCCGAACCCCATGTATT 60.065 52.381 0.00 0.00 45.83 1.89
431 432 0.544697 GTGGTCCGAACCCCATGTAT 59.455 55.000 0.00 0.00 45.83 2.29
432 433 1.555477 GGTGGTCCGAACCCCATGTA 61.555 60.000 0.00 0.00 45.83 2.29
433 434 2.754375 GTGGTCCGAACCCCATGT 59.246 61.111 0.00 0.00 45.83 3.21
434 435 2.045340 GGTGGTCCGAACCCCATG 60.045 66.667 0.00 0.00 45.83 3.66
435 436 1.928567 ATGGTGGTCCGAACCCCAT 60.929 57.895 7.82 7.82 44.66 4.00
436 437 2.530661 ATGGTGGTCCGAACCCCA 60.531 61.111 3.62 3.62 45.83 4.96
437 438 0.979187 TAGATGGTGGTCCGAACCCC 60.979 60.000 0.00 0.00 45.83 4.95
438 439 0.906775 TTAGATGGTGGTCCGAACCC 59.093 55.000 0.00 0.00 45.83 4.11
439 440 2.773993 TTTAGATGGTGGTCCGAACC 57.226 50.000 0.00 0.00 46.66 3.62
469 470 8.655935 ATTTCTAGATGGAGGTGTGAATTTTT 57.344 30.769 0.00 0.00 0.00 1.94
470 471 8.655935 AATTTCTAGATGGAGGTGTGAATTTT 57.344 30.769 0.00 0.00 0.00 1.82
471 472 9.927081 ATAATTTCTAGATGGAGGTGTGAATTT 57.073 29.630 0.00 0.00 0.00 1.82
472 473 9.927081 AATAATTTCTAGATGGAGGTGTGAATT 57.073 29.630 0.00 0.00 0.00 2.17
473 474 9.566432 GAATAATTTCTAGATGGAGGTGTGAAT 57.434 33.333 0.00 0.00 0.00 2.57
474 475 7.993183 GGAATAATTTCTAGATGGAGGTGTGAA 59.007 37.037 0.00 0.00 32.16 3.18
475 476 7.127186 TGGAATAATTTCTAGATGGAGGTGTGA 59.873 37.037 0.00 0.00 32.16 3.58
476 477 7.282585 TGGAATAATTTCTAGATGGAGGTGTG 58.717 38.462 0.00 0.00 32.16 3.82
477 478 7.451731 TGGAATAATTTCTAGATGGAGGTGT 57.548 36.000 0.00 0.00 32.16 4.16
478 479 8.752005 TTTGGAATAATTTCTAGATGGAGGTG 57.248 34.615 0.00 0.00 32.16 4.00
479 480 9.413734 CTTTTGGAATAATTTCTAGATGGAGGT 57.586 33.333 0.00 0.00 32.16 3.85
480 481 8.355913 GCTTTTGGAATAATTTCTAGATGGAGG 58.644 37.037 0.00 0.00 32.16 4.30
481 482 9.129532 AGCTTTTGGAATAATTTCTAGATGGAG 57.870 33.333 0.00 0.00 32.16 3.86
482 483 9.479549 AAGCTTTTGGAATAATTTCTAGATGGA 57.520 29.630 0.00 0.00 32.16 3.41
489 490 8.090831 GGTGAGAAAGCTTTTGGAATAATTTCT 58.909 33.333 14.05 0.51 38.01 2.52
490 491 7.872483 TGGTGAGAAAGCTTTTGGAATAATTTC 59.128 33.333 14.05 0.00 0.00 2.17
491 492 7.734942 TGGTGAGAAAGCTTTTGGAATAATTT 58.265 30.769 14.05 0.00 0.00 1.82
492 493 7.301868 TGGTGAGAAAGCTTTTGGAATAATT 57.698 32.000 14.05 0.00 0.00 1.40
493 494 6.916360 TGGTGAGAAAGCTTTTGGAATAAT 57.084 33.333 14.05 0.00 0.00 1.28
494 495 6.295236 CCATGGTGAGAAAGCTTTTGGAATAA 60.295 38.462 14.05 0.00 0.00 1.40
495 496 5.185635 CCATGGTGAGAAAGCTTTTGGAATA 59.814 40.000 14.05 0.05 0.00 1.75
496 497 4.020839 CCATGGTGAGAAAGCTTTTGGAAT 60.021 41.667 14.05 0.61 0.00 3.01
497 498 3.321682 CCATGGTGAGAAAGCTTTTGGAA 59.678 43.478 14.05 0.00 0.00 3.53
498 499 2.892852 CCATGGTGAGAAAGCTTTTGGA 59.107 45.455 14.05 0.00 0.00 3.53
499 500 2.611224 GCCATGGTGAGAAAGCTTTTGG 60.611 50.000 14.05 15.36 0.00 3.28
500 501 2.611224 GGCCATGGTGAGAAAGCTTTTG 60.611 50.000 14.05 5.49 0.00 2.44
501 502 1.620323 GGCCATGGTGAGAAAGCTTTT 59.380 47.619 14.05 3.35 0.00 2.27
502 503 1.260544 GGCCATGGTGAGAAAGCTTT 58.739 50.000 12.53 12.53 0.00 3.51
503 504 0.112995 TGGCCATGGTGAGAAAGCTT 59.887 50.000 14.67 0.00 0.00 3.74
504 505 0.112995 TTGGCCATGGTGAGAAAGCT 59.887 50.000 14.67 0.00 0.00 3.74
505 506 0.244721 GTTGGCCATGGTGAGAAAGC 59.755 55.000 14.67 0.00 0.00 3.51
506 507 0.890683 GGTTGGCCATGGTGAGAAAG 59.109 55.000 14.67 0.00 34.09 2.62
507 508 0.187117 TGGTTGGCCATGGTGAGAAA 59.813 50.000 14.67 0.00 40.46 2.52
508 509 0.251297 CTGGTTGGCCATGGTGAGAA 60.251 55.000 14.67 0.00 45.05 2.87
509 510 1.379916 CTGGTTGGCCATGGTGAGA 59.620 57.895 14.67 0.00 45.05 3.27
510 511 2.345760 GCTGGTTGGCCATGGTGAG 61.346 63.158 14.67 0.00 45.05 3.51
511 512 2.283101 GCTGGTTGGCCATGGTGA 60.283 61.111 14.67 0.00 45.05 4.02
512 513 1.909781 AAGCTGGTTGGCCATGGTG 60.910 57.895 14.67 0.00 45.05 4.17
513 514 1.909781 CAAGCTGGTTGGCCATGGT 60.910 57.895 14.67 0.00 45.05 3.55
514 515 2.975536 CAAGCTGGTTGGCCATGG 59.024 61.111 6.09 7.63 45.05 3.66
515 516 2.263540 GCAAGCTGGTTGGCCATG 59.736 61.111 19.87 0.00 45.05 3.66
516 517 3.376078 CGCAAGCTGGTTGGCCAT 61.376 61.111 19.87 0.00 45.05 4.40
534 535 1.290203 CAACTAGCTATGCCACGTGG 58.710 55.000 30.66 30.66 38.53 4.94
535 536 1.290203 CCAACTAGCTATGCCACGTG 58.710 55.000 9.08 9.08 0.00 4.49
536 537 0.462047 GCCAACTAGCTATGCCACGT 60.462 55.000 0.00 0.00 0.00 4.49
537 538 1.160329 GGCCAACTAGCTATGCCACG 61.160 60.000 15.11 0.00 41.76 4.94
538 539 0.107214 TGGCCAACTAGCTATGCCAC 60.107 55.000 17.52 0.00 46.57 5.01
540 541 0.819666 GGTGGCCAACTAGCTATGCC 60.820 60.000 15.48 13.79 42.49 4.40
541 542 0.107214 TGGTGGCCAACTAGCTATGC 60.107 55.000 24.13 0.00 0.00 3.14
542 543 2.418368 TTGGTGGCCAACTAGCTATG 57.582 50.000 24.13 0.00 38.75 2.23
543 544 2.780010 AGATTGGTGGCCAACTAGCTAT 59.220 45.455 21.64 6.90 46.95 2.97
544 545 2.170607 GAGATTGGTGGCCAACTAGCTA 59.829 50.000 22.91 0.00 46.95 3.32
545 546 0.995024 AGATTGGTGGCCAACTAGCT 59.005 50.000 24.13 20.73 46.95 3.32
546 547 1.383523 GAGATTGGTGGCCAACTAGC 58.616 55.000 24.13 18.41 46.95 3.42
547 548 1.561542 AGGAGATTGGTGGCCAACTAG 59.438 52.381 24.13 0.00 46.95 2.57
548 549 1.281867 CAGGAGATTGGTGGCCAACTA 59.718 52.381 24.13 16.26 46.95 2.24
549 550 0.038744 CAGGAGATTGGTGGCCAACT 59.961 55.000 24.13 0.98 46.95 3.16
550 551 0.038166 TCAGGAGATTGGTGGCCAAC 59.962 55.000 15.99 15.99 46.95 3.77
552 553 0.256752 CATCAGGAGATTGGTGGCCA 59.743 55.000 0.00 0.00 30.20 5.36
553 554 1.105759 GCATCAGGAGATTGGTGGCC 61.106 60.000 0.00 0.00 30.20 5.36
554 555 0.106819 AGCATCAGGAGATTGGTGGC 60.107 55.000 0.00 0.00 30.20 5.01
555 556 2.431954 AAGCATCAGGAGATTGGTGG 57.568 50.000 0.00 0.00 30.20 4.61
556 557 4.277672 CCATTAAGCATCAGGAGATTGGTG 59.722 45.833 0.00 0.00 30.20 4.17
557 558 4.467769 CCATTAAGCATCAGGAGATTGGT 58.532 43.478 0.00 0.00 30.20 3.67
558 559 3.825014 CCCATTAAGCATCAGGAGATTGG 59.175 47.826 0.00 0.00 30.20 3.16
559 560 4.467769 ACCCATTAAGCATCAGGAGATTG 58.532 43.478 0.00 0.00 30.20 2.67
560 561 4.803329 ACCCATTAAGCATCAGGAGATT 57.197 40.909 0.00 0.00 30.20 2.40
561 562 4.803329 AACCCATTAAGCATCAGGAGAT 57.197 40.909 0.00 0.00 33.87 2.75
562 563 4.591321 AAACCCATTAAGCATCAGGAGA 57.409 40.909 0.00 0.00 0.00 3.71
563 564 6.015940 GGATTAAACCCATTAAGCATCAGGAG 60.016 42.308 0.00 0.00 40.78 3.69
564 565 5.833131 GGATTAAACCCATTAAGCATCAGGA 59.167 40.000 0.00 0.00 40.78 3.86
565 566 5.598005 TGGATTAAACCCATTAAGCATCAGG 59.402 40.000 0.00 0.00 40.78 3.86
566 567 6.096705 TGTGGATTAAACCCATTAAGCATCAG 59.903 38.462 0.00 0.00 40.78 2.90
567 568 5.954752 TGTGGATTAAACCCATTAAGCATCA 59.045 36.000 0.00 0.00 40.78 3.07
568 569 6.273071 GTGTGGATTAAACCCATTAAGCATC 58.727 40.000 0.00 0.00 40.78 3.91
569 570 5.128663 GGTGTGGATTAAACCCATTAAGCAT 59.871 40.000 0.00 0.00 40.78 3.79
570 571 4.464597 GGTGTGGATTAAACCCATTAAGCA 59.535 41.667 0.00 0.00 40.78 3.91
571 572 4.709886 AGGTGTGGATTAAACCCATTAAGC 59.290 41.667 0.00 1.83 38.80 3.09
572 573 5.359860 GGAGGTGTGGATTAAACCCATTAAG 59.640 44.000 0.00 0.00 36.94 1.85
573 574 5.222358 TGGAGGTGTGGATTAAACCCATTAA 60.222 40.000 0.00 0.00 37.86 1.40
574 575 4.292571 TGGAGGTGTGGATTAAACCCATTA 59.707 41.667 0.00 0.00 35.91 1.90
575 576 3.076785 TGGAGGTGTGGATTAAACCCATT 59.923 43.478 0.00 0.00 35.91 3.16
576 577 2.652348 TGGAGGTGTGGATTAAACCCAT 59.348 45.455 0.00 0.00 35.91 4.00
577 578 2.066592 TGGAGGTGTGGATTAAACCCA 58.933 47.619 0.00 0.00 34.29 4.51
578 579 2.891191 TGGAGGTGTGGATTAAACCC 57.109 50.000 0.00 0.00 34.29 4.11
579 580 4.236527 AGATGGAGGTGTGGATTAAACC 57.763 45.455 0.00 0.00 0.00 3.27
580 581 7.110155 TCTTTAGATGGAGGTGTGGATTAAAC 58.890 38.462 0.00 0.00 0.00 2.01
581 582 7.265599 TCTTTAGATGGAGGTGTGGATTAAA 57.734 36.000 0.00 0.00 0.00 1.52
582 583 6.884472 TCTTTAGATGGAGGTGTGGATTAA 57.116 37.500 0.00 0.00 0.00 1.40
583 584 7.451731 AATCTTTAGATGGAGGTGTGGATTA 57.548 36.000 0.00 0.00 34.49 1.75
584 585 5.983333 ATCTTTAGATGGAGGTGTGGATT 57.017 39.130 0.00 0.00 32.68 3.01
585 586 5.983333 AATCTTTAGATGGAGGTGTGGAT 57.017 39.130 0.00 0.00 34.49 3.41
586 587 5.779241 AAATCTTTAGATGGAGGTGTGGA 57.221 39.130 0.00 0.00 34.49 4.02
587 588 6.127619 GGAAAAATCTTTAGATGGAGGTGTGG 60.128 42.308 0.00 0.00 34.49 4.17
588 589 6.434028 TGGAAAAATCTTTAGATGGAGGTGTG 59.566 38.462 0.00 0.00 34.49 3.82
589 590 6.552008 TGGAAAAATCTTTAGATGGAGGTGT 58.448 36.000 0.00 0.00 34.49 4.16
590 591 7.466746 TTGGAAAAATCTTTAGATGGAGGTG 57.533 36.000 0.00 0.00 34.49 4.00
591 592 8.491045 TTTTGGAAAAATCTTTAGATGGAGGT 57.509 30.769 0.00 0.00 34.49 3.85
592 593 7.547019 GCTTTTGGAAAAATCTTTAGATGGAGG 59.453 37.037 0.00 0.00 34.49 4.30
593 594 8.309656 AGCTTTTGGAAAAATCTTTAGATGGAG 58.690 33.333 0.00 0.00 34.49 3.86
594 595 8.193953 AGCTTTTGGAAAAATCTTTAGATGGA 57.806 30.769 0.00 0.00 34.49 3.41
595 596 8.837788 AAGCTTTTGGAAAAATCTTTAGATGG 57.162 30.769 0.00 0.00 34.49 3.51
598 599 9.750125 GAGAAAGCTTTTGGAAAAATCTTTAGA 57.250 29.630 14.05 0.00 34.16 2.10
599 600 9.533253 TGAGAAAGCTTTTGGAAAAATCTTTAG 57.467 29.630 14.05 0.00 34.16 1.85
600 601 9.313118 GTGAGAAAGCTTTTGGAAAAATCTTTA 57.687 29.630 14.05 0.00 34.16 1.85
601 602 7.280876 GGTGAGAAAGCTTTTGGAAAAATCTTT 59.719 33.333 14.05 11.85 35.43 2.52
602 603 6.763135 GGTGAGAAAGCTTTTGGAAAAATCTT 59.237 34.615 14.05 0.00 0.00 2.40
603 604 6.127083 TGGTGAGAAAGCTTTTGGAAAAATCT 60.127 34.615 14.05 1.88 0.00 2.40
604 605 6.018751 GTGGTGAGAAAGCTTTTGGAAAAATC 60.019 38.462 14.05 0.00 0.00 2.17
605 606 5.817296 GTGGTGAGAAAGCTTTTGGAAAAAT 59.183 36.000 14.05 0.00 0.00 1.82
606 607 5.175127 GTGGTGAGAAAGCTTTTGGAAAAA 58.825 37.500 14.05 0.00 0.00 1.94
607 608 4.676723 CGTGGTGAGAAAGCTTTTGGAAAA 60.677 41.667 14.05 0.00 0.00 2.29
608 609 3.181491 CGTGGTGAGAAAGCTTTTGGAAA 60.181 43.478 14.05 0.00 0.00 3.13
609 610 2.357637 CGTGGTGAGAAAGCTTTTGGAA 59.642 45.455 14.05 0.00 0.00 3.53
610 611 1.946768 CGTGGTGAGAAAGCTTTTGGA 59.053 47.619 14.05 0.00 0.00 3.53
611 612 1.001378 CCGTGGTGAGAAAGCTTTTGG 60.001 52.381 14.05 2.28 0.00 3.28
612 613 1.600413 GCCGTGGTGAGAAAGCTTTTG 60.600 52.381 14.05 0.00 0.00 2.44
613 614 0.668535 GCCGTGGTGAGAAAGCTTTT 59.331 50.000 14.05 3.35 0.00 2.27
614 615 1.172812 GGCCGTGGTGAGAAAGCTTT 61.173 55.000 12.53 12.53 0.00 3.51
615 616 1.600916 GGCCGTGGTGAGAAAGCTT 60.601 57.895 0.00 0.00 0.00 3.74
616 617 2.032681 GGCCGTGGTGAGAAAGCT 59.967 61.111 0.00 0.00 0.00 3.74
617 618 1.896660 TTGGCCGTGGTGAGAAAGC 60.897 57.895 0.00 0.00 0.00 3.51
618 619 1.515521 GGTTGGCCGTGGTGAGAAAG 61.516 60.000 0.00 0.00 0.00 2.62
619 620 1.527380 GGTTGGCCGTGGTGAGAAA 60.527 57.895 0.00 0.00 0.00 2.52
620 621 2.112297 GGTTGGCCGTGGTGAGAA 59.888 61.111 0.00 0.00 0.00 2.87
621 622 3.164977 TGGTTGGCCGTGGTGAGA 61.165 61.111 0.00 0.00 37.67 3.27
622 623 2.669569 CTGGTTGGCCGTGGTGAG 60.670 66.667 0.00 0.00 37.67 3.51
623 624 4.947147 GCTGGTTGGCCGTGGTGA 62.947 66.667 0.00 0.00 37.67 4.02
624 625 4.954970 AGCTGGTTGGCCGTGGTG 62.955 66.667 0.00 0.00 37.67 4.17
625 626 4.204028 AAGCTGGTTGGCCGTGGT 62.204 61.111 0.00 0.00 37.67 4.16
626 627 3.673484 CAAGCTGGTTGGCCGTGG 61.673 66.667 11.59 0.00 37.67 4.94
627 628 4.347453 GCAAGCTGGTTGGCCGTG 62.347 66.667 19.87 0.00 36.56 4.94
646 647 0.742505 CAACCAGCTATGCCACATGG 59.257 55.000 0.00 0.00 37.07 3.66
647 648 0.742505 CCAACCAGCTATGCCACATG 59.257 55.000 0.00 0.00 0.00 3.21
648 649 1.039233 GCCAACCAGCTATGCCACAT 61.039 55.000 0.00 0.00 0.00 3.21
649 650 1.678635 GCCAACCAGCTATGCCACA 60.679 57.895 0.00 0.00 0.00 4.17
650 651 2.418083 GGCCAACCAGCTATGCCAC 61.418 63.158 0.00 0.00 41.76 5.01
651 652 2.044053 GGCCAACCAGCTATGCCA 60.044 61.111 0.00 0.00 41.76 4.92
652 653 3.211963 CGGCCAACCAGCTATGCC 61.212 66.667 2.24 0.00 38.74 4.40
653 654 3.892581 GCGGCCAACCAGCTATGC 61.893 66.667 2.24 0.00 34.11 3.14
654 655 3.211963 GGCGGCCAACCAGCTATG 61.212 66.667 15.62 0.00 36.24 2.23
655 656 2.572333 ATTGGCGGCCAACCAGCTAT 62.572 55.000 34.85 15.89 46.95 2.97
656 657 3.280938 ATTGGCGGCCAACCAGCTA 62.281 57.895 34.85 13.34 46.95 3.32
657 658 4.684134 ATTGGCGGCCAACCAGCT 62.684 61.111 34.85 17.41 46.95 4.24
658 659 4.133796 GATTGGCGGCCAACCAGC 62.134 66.667 34.85 20.42 46.95 4.85
659 660 2.361610 AGATTGGCGGCCAACCAG 60.362 61.111 34.85 0.00 46.95 4.00
660 661 2.361104 GAGATTGGCGGCCAACCA 60.361 61.111 34.85 15.76 46.95 3.67
661 662 3.140814 GGAGATTGGCGGCCAACC 61.141 66.667 34.85 27.34 46.95 3.77
662 663 3.140814 GGGAGATTGGCGGCCAAC 61.141 66.667 34.85 26.14 46.95 3.77
672 673 8.130675 ATTAAACCCATTAAGCATCGGGAGATT 61.131 37.037 0.00 0.00 41.24 2.40
673 674 6.694086 ATTAAACCCATTAAGCATCGGGAGAT 60.694 38.462 0.00 0.00 42.68 2.75
674 675 1.507140 ACCCATTAAGCATCGGGAGA 58.493 50.000 0.00 0.00 41.62 3.71
675 676 2.348411 AACCCATTAAGCATCGGGAG 57.652 50.000 0.00 0.00 41.62 4.30
676 677 2.818751 AAACCCATTAAGCATCGGGA 57.181 45.000 0.00 0.00 41.62 5.14
677 678 5.529581 AATTAAACCCATTAAGCATCGGG 57.470 39.130 0.00 0.00 44.88 5.14
678 679 9.840427 CTATTAATTAAACCCATTAAGCATCGG 57.160 33.333 1.21 0.00 36.94 4.18
679 680 9.840427 CCTATTAATTAAACCCATTAAGCATCG 57.160 33.333 1.21 0.00 36.94 3.84
680 681 9.639601 GCCTATTAATTAAACCCATTAAGCATC 57.360 33.333 1.21 0.00 36.94 3.91
681 682 9.379770 AGCCTATTAATTAAACCCATTAAGCAT 57.620 29.630 1.21 0.00 36.94 3.79
682 683 8.637986 CAGCCTATTAATTAAACCCATTAAGCA 58.362 33.333 1.21 0.00 36.94 3.91
683 684 8.638873 ACAGCCTATTAATTAAACCCATTAAGC 58.361 33.333 1.21 0.00 36.94 3.09
684 685 9.965824 CACAGCCTATTAATTAAACCCATTAAG 57.034 33.333 1.21 0.00 36.94 1.85
685 686 9.482175 ACACAGCCTATTAATTAAACCCATTAA 57.518 29.630 1.21 0.00 37.86 1.40
686 687 8.908903 CACACAGCCTATTAATTAAACCCATTA 58.091 33.333 1.21 0.00 0.00 1.90
687 688 7.617723 TCACACAGCCTATTAATTAAACCCATT 59.382 33.333 1.21 0.00 0.00 3.16
688 689 7.122715 TCACACAGCCTATTAATTAAACCCAT 58.877 34.615 1.21 0.00 0.00 4.00
689 690 6.486056 TCACACAGCCTATTAATTAAACCCA 58.514 36.000 1.21 0.00 0.00 4.51
690 691 7.284489 TCATCACACAGCCTATTAATTAAACCC 59.716 37.037 1.21 0.00 0.00 4.11
691 692 8.129211 GTCATCACACAGCCTATTAATTAAACC 58.871 37.037 1.21 0.00 0.00 3.27
692 693 8.129211 GGTCATCACACAGCCTATTAATTAAAC 58.871 37.037 1.21 0.00 0.00 2.01
693 694 8.052748 AGGTCATCACACAGCCTATTAATTAAA 58.947 33.333 1.21 0.00 0.00 1.52
694 695 7.573710 AGGTCATCACACAGCCTATTAATTAA 58.426 34.615 0.00 0.00 0.00 1.40
695 696 7.136822 AGGTCATCACACAGCCTATTAATTA 57.863 36.000 0.00 0.00 0.00 1.40
696 697 6.006275 AGGTCATCACACAGCCTATTAATT 57.994 37.500 0.00 0.00 0.00 1.40
697 698 5.636903 AGGTCATCACACAGCCTATTAAT 57.363 39.130 0.00 0.00 0.00 1.40
698 699 5.435686 AAGGTCATCACACAGCCTATTAA 57.564 39.130 0.00 0.00 0.00 1.40
699 700 5.185454 CAAAGGTCATCACACAGCCTATTA 58.815 41.667 0.00 0.00 0.00 0.98
700 701 4.012374 CAAAGGTCATCACACAGCCTATT 58.988 43.478 0.00 0.00 0.00 1.73
723 724 0.108615 ACAGCAGAACGATTCTCCCG 60.109 55.000 0.00 0.00 38.11 5.14
862 975 7.364056 GGTTTGTATGGTCTGTGTGGTATAGTA 60.364 40.741 0.00 0.00 0.00 1.82
886 999 5.023452 AGGTTTTTCCTCTTTTCTTGTGGT 58.977 37.500 0.00 0.00 44.42 4.16
887 1000 5.351458 CAGGTTTTTCCTCTTTTCTTGTGG 58.649 41.667 0.00 0.00 46.24 4.17
898 1011 1.866853 CGCAGCCCAGGTTTTTCCTC 61.867 60.000 0.00 0.00 46.24 3.71
937 1050 1.537638 GACACGAAGAGACTGCAGAGA 59.462 52.381 23.35 0.00 0.00 3.10
972 1085 4.821589 CCCTGACCGAAGAGGCGC 62.822 72.222 0.00 0.00 46.52 6.53
973 1086 4.148825 CCCCTGACCGAAGAGGCG 62.149 72.222 0.00 0.00 46.52 5.52
974 1087 4.475135 GCCCCTGACCGAAGAGGC 62.475 72.222 0.00 0.00 46.52 4.70
976 1089 4.148825 CCGCCCCTGACCGAAGAG 62.149 72.222 0.00 0.00 0.00 2.85
978 1091 4.452733 GACCGCCCCTGACCGAAG 62.453 72.222 0.00 0.00 0.00 3.79
1372 1490 9.880157 GTATTACCAAGAGATTACTGTTTACCA 57.120 33.333 0.00 0.00 0.00 3.25
1373 1491 9.322773 GGTATTACCAAGAGATTACTGTTTACC 57.677 37.037 8.03 0.00 38.42 2.85
1374 1492 9.028185 CGGTATTACCAAGAGATTACTGTTTAC 57.972 37.037 13.22 0.00 38.47 2.01
1375 1493 8.752187 ACGGTATTACCAAGAGATTACTGTTTA 58.248 33.333 13.22 0.00 38.47 2.01
1376 1494 7.548075 CACGGTATTACCAAGAGATTACTGTTT 59.452 37.037 13.22 0.00 38.47 2.83
1377 1495 7.039882 CACGGTATTACCAAGAGATTACTGTT 58.960 38.462 13.22 0.00 38.47 3.16
1418 1536 3.592059 TGTTCATCGTAGGCCTGTTTAC 58.408 45.455 17.99 4.03 0.00 2.01
1453 1571 3.709587 TCTTGAGAAGGTAGGTACAGGG 58.290 50.000 0.00 0.00 0.00 4.45
1504 1622 2.498167 AGTGGAAGATGCAACACTGAC 58.502 47.619 9.54 0.00 42.14 3.51
1558 1676 2.093447 AGTGACCCGGAAATCAGATGTC 60.093 50.000 0.73 0.00 0.00 3.06
1588 1706 2.826128 CCTAGCTCCTGAATACGCCATA 59.174 50.000 0.00 0.00 0.00 2.74
1623 1741 7.968956 TGTTGTTTTTGATCGCTGTAGTTTTTA 59.031 29.630 0.00 0.00 0.00 1.52
1635 1753 3.146066 TCCCCTCTGTTGTTTTTGATCG 58.854 45.455 0.00 0.00 0.00 3.69
1638 1756 6.139679 AGATATCCCCTCTGTTGTTTTTGA 57.860 37.500 0.00 0.00 0.00 2.69
1676 1802 9.871238 CATCAAGATTGAGAAATGAGGAAAAAT 57.129 29.630 1.32 0.00 41.08 1.82
1686 2034 8.963725 TCAATAAGCACATCAAGATTGAGAAAT 58.036 29.630 1.32 0.00 41.08 2.17
1722 2070 2.028930 GTGGGTGATAGGCTCTTATCGG 60.029 54.545 0.00 0.00 33.63 4.18
1779 2202 9.601971 GTATGTTTACTTGCGTTTTCTCATTAA 57.398 29.630 0.00 0.00 0.00 1.40
1807 2234 7.319646 TGCTATATGTTTACTTGCCCTTTTTG 58.680 34.615 0.00 0.00 0.00 2.44
1812 2239 5.067805 GCTTTGCTATATGTTTACTTGCCCT 59.932 40.000 0.00 0.00 0.00 5.19
1930 2382 5.477637 TCTTACCCCGAAAATTTCCGATTTT 59.522 36.000 0.00 0.00 34.30 1.82
1960 2412 6.986817 TCAAAGCTAGCAATATACTTCTGGAC 59.013 38.462 18.83 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.