Multiple sequence alignment - TraesCS7D01G451300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G451300 chr7D 100.000 3805 0 0 1 3805 571199014 571195210 0.000000e+00 7027.0
1 TraesCS7D01G451300 chr7B 94.835 2091 68 14 1 2066 627057740 627055665 0.000000e+00 3227.0
2 TraesCS7D01G451300 chr7B 91.872 972 49 19 2127 3088 627055485 627054534 0.000000e+00 1330.0
3 TraesCS7D01G451300 chr7B 82.016 367 40 17 3230 3589 21312056 21312403 4.810000e-74 289.0
4 TraesCS7D01G451300 chr7A 94.444 1980 77 6 1 1973 660411044 660409091 0.000000e+00 3016.0
5 TraesCS7D01G451300 chr7A 94.079 912 32 12 2127 3025 660408979 660408077 0.000000e+00 1365.0
6 TraesCS7D01G451300 chr7A 91.111 225 14 5 3581 3805 660407912 660407694 2.220000e-77 300.0
7 TraesCS7D01G451300 chr6B 91.623 764 52 8 1213 1973 699029750 699028996 0.000000e+00 1046.0
8 TraesCS7D01G451300 chr6B 88.442 199 21 2 2129 2327 699028652 699028456 4.910000e-59 239.0
9 TraesCS7D01G451300 chr6B 86.066 122 16 1 3086 3206 87535295 87535416 3.080000e-26 130.0
10 TraesCS7D01G451300 chr5D 81.623 419 50 19 3203 3607 260675964 260675559 4.740000e-84 322.0
11 TraesCS7D01G451300 chr5D 88.136 118 10 2 3090 3203 420207459 420207342 1.840000e-28 137.0
12 TraesCS7D01G451300 chr5D 87.395 119 12 3 3089 3206 260675966 260675850 2.380000e-27 134.0
13 TraesCS7D01G451300 chr3D 81.234 389 41 16 3203 3585 590982645 590982283 6.220000e-73 285.0
14 TraesCS7D01G451300 chr3D 86.441 118 15 1 3089 3206 513859688 513859572 1.110000e-25 128.0
15 TraesCS7D01G451300 chr2D 80.939 362 43 16 3203 3557 589644116 589644458 2.910000e-66 263.0
16 TraesCS7D01G451300 chr2D 76.692 399 56 25 3205 3585 2079215 2079594 1.800000e-43 187.0
17 TraesCS7D01G451300 chr2D 88.034 117 13 1 3090 3206 20687252 20687367 1.840000e-28 137.0
18 TraesCS7D01G451300 chr2D 86.555 119 13 3 3089 3206 81638828 81638944 1.110000e-25 128.0
19 TraesCS7D01G451300 chr2A 79.695 394 54 19 3204 3587 1220700 1221077 1.050000e-65 261.0
20 TraesCS7D01G451300 chr3B 79.188 394 56 14 3203 3586 814364543 814364166 2.270000e-62 250.0
21 TraesCS7D01G451300 chr4D 86.344 227 24 4 3203 3424 491001688 491001464 1.370000e-59 241.0
22 TraesCS7D01G451300 chr5B 79.501 361 46 19 3233 3584 24680370 24680029 8.220000e-57 231.0
23 TraesCS7D01G451300 chr4A 78.228 395 48 24 3204 3585 478166752 478167121 6.400000e-53 219.0
24 TraesCS7D01G451300 chr4B 87.826 115 14 0 3091 3205 260050678 260050792 6.630000e-28 135.0
25 TraesCS7D01G451300 chr2B 87.179 117 15 0 3090 3206 51674683 51674799 2.380000e-27 134.0
26 TraesCS7D01G451300 chr5A 87.288 118 11 2 3090 3203 533849575 533849458 8.580000e-27 132.0
27 TraesCS7D01G451300 chr1B 88.889 54 6 0 3663 3716 92589885 92589832 2.450000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G451300 chr7D 571195210 571199014 3804 True 7027.000000 7027 100.000000 1 3805 1 chr7D.!!$R1 3804
1 TraesCS7D01G451300 chr7B 627054534 627057740 3206 True 2278.500000 3227 93.353500 1 3088 2 chr7B.!!$R1 3087
2 TraesCS7D01G451300 chr7A 660407694 660411044 3350 True 1560.333333 3016 93.211333 1 3805 3 chr7A.!!$R1 3804
3 TraesCS7D01G451300 chr6B 699028456 699029750 1294 True 642.500000 1046 90.032500 1213 2327 2 chr6B.!!$R1 1114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.662619 ACCACATGTCAGTTGCAACG 59.337 50.000 23.21 17.58 0.00 4.10 F
166 167 1.882912 CCTGTGCAAAGCTGTCAGTA 58.117 50.000 0.00 0.00 0.00 2.74 F
1087 1095 1.981495 AGGGTATGAGCTCTTATGCCC 59.019 52.381 24.52 24.52 46.87 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 1954 2.887151 ATAGCAAAGCAGACAGGGTT 57.113 45.000 0.00 0.0 0.0 4.11 R
2153 2499 3.437049 CCTCTGCAGGTAAAAACTACAGC 59.563 47.826 15.13 0.0 34.6 4.40 R
3065 3529 0.242017 GGCTGTGTGATGACCTTTGC 59.758 55.000 0.00 0.0 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.215942 AAAGATGTGGTGGCCTAACC 57.784 50.000 3.32 4.45 40.94 2.85
87 88 6.806388 TGATTATGCATGTCATCACATACC 57.194 37.500 10.16 2.77 41.69 2.73
104 105 0.662619 ACCACATGTCAGTTGCAACG 59.337 50.000 23.21 17.58 0.00 4.10
166 167 1.882912 CCTGTGCAAAGCTGTCAGTA 58.117 50.000 0.00 0.00 0.00 2.74
189 190 8.164070 AGTAATGTTTCTGATGGGTAAAACTCT 58.836 33.333 0.00 0.00 33.75 3.24
225 226 7.530426 AGTTTGAATCTAGGTGAAATGCTTT 57.470 32.000 0.00 0.00 0.00 3.51
267 268 3.070446 TGGAAGTTTCTAAGAGCACCGAA 59.930 43.478 0.00 0.00 0.00 4.30
283 284 4.380444 GCACCGAAAAATCTGGAGCATTTA 60.380 41.667 0.00 0.00 38.92 1.40
341 342 6.830873 ATTTAGCCCATAATTCATGAGCTC 57.169 37.500 6.82 6.82 44.80 4.09
411 412 7.488150 TCTCAGTTATTATGTCAGCAAACTACG 59.512 37.037 0.00 0.00 0.00 3.51
485 486 9.003112 CGAAATTCATTAACTATTTGCAGTCAG 57.997 33.333 0.00 0.00 0.00 3.51
503 504 4.639310 AGTCAGAATTCATGCCATCTTGTC 59.361 41.667 8.44 0.00 0.00 3.18
504 505 4.639310 GTCAGAATTCATGCCATCTTGTCT 59.361 41.667 8.44 0.00 0.00 3.41
586 587 8.078060 TGTGACATTCTGACCATAGATTTCTA 57.922 34.615 0.00 0.00 0.00 2.10
588 589 9.202273 GTGACATTCTGACCATAGATTTCTATC 57.798 37.037 0.00 0.00 37.07 2.08
589 590 8.927411 TGACATTCTGACCATAGATTTCTATCA 58.073 33.333 0.00 0.00 37.07 2.15
590 591 9.941325 GACATTCTGACCATAGATTTCTATCAT 57.059 33.333 0.00 0.00 37.07 2.45
718 720 8.722480 TGTTTGACTCACATGGATCTAAATAG 57.278 34.615 0.00 0.00 0.00 1.73
855 863 6.326583 TGTTCTCCCGTTTCAGGATATAATCT 59.673 38.462 0.00 0.00 31.48 2.40
1087 1095 1.981495 AGGGTATGAGCTCTTATGCCC 59.019 52.381 24.52 24.52 46.87 5.36
1828 1840 6.986817 TCAAAGCTAGCAATATACTTCTGGAC 59.013 38.462 18.83 0.00 0.00 4.02
1858 1870 5.477637 TCTTACCCCGAAAATTTCCGATTTT 59.522 36.000 0.00 0.00 34.30 1.82
1976 2013 5.067805 GCTTTGCTATATGTTTACTTGCCCT 59.932 40.000 0.00 0.00 0.00 5.19
1981 2018 7.319646 TGCTATATGTTTACTTGCCCTTTTTG 58.680 34.615 0.00 0.00 0.00 2.44
2009 2050 9.601971 GTATGTTTACTTGCGTTTTCTCATTAA 57.398 29.630 0.00 0.00 0.00 1.40
2066 2159 2.028930 GTGGGTGATAGGCTCTTATCGG 60.029 54.545 0.00 0.00 33.63 4.18
2102 2218 8.963725 TCAATAAGCACATCAAGATTGAGAAAT 58.036 29.630 1.32 0.00 41.08 2.17
2112 2362 9.871238 CATCAAGATTGAGAAATGAGGAAAAAT 57.129 29.630 1.32 0.00 41.08 1.82
2150 2496 6.139679 AGATATCCCCTCTGTTGTTTTTGA 57.860 37.500 0.00 0.00 0.00 2.69
2153 2499 3.146066 TCCCCTCTGTTGTTTTTGATCG 58.854 45.455 0.00 0.00 0.00 3.69
2165 2511 7.968956 TGTTGTTTTTGATCGCTGTAGTTTTTA 59.031 29.630 0.00 0.00 0.00 1.52
2200 2546 2.826128 CCTAGCTCCTGAATACGCCATA 59.174 50.000 0.00 0.00 0.00 2.74
2230 2576 2.093447 AGTGACCCGGAAATCAGATGTC 60.093 50.000 0.73 0.00 0.00 3.06
2284 2630 2.498167 AGTGGAAGATGCAACACTGAC 58.502 47.619 9.54 0.00 42.14 3.51
2335 2681 3.709587 TCTTGAGAAGGTAGGTACAGGG 58.290 50.000 0.00 0.00 0.00 4.45
2411 2757 7.039882 CACGGTATTACCAAGAGATTACTGTT 58.960 38.462 13.22 0.00 38.47 3.16
2412 2758 7.548075 CACGGTATTACCAAGAGATTACTGTTT 59.452 37.037 13.22 0.00 38.47 2.83
2413 2759 8.752187 ACGGTATTACCAAGAGATTACTGTTTA 58.248 33.333 13.22 0.00 38.47 2.01
2414 2760 9.028185 CGGTATTACCAAGAGATTACTGTTTAC 57.972 37.037 13.22 0.00 38.47 2.01
2415 2761 9.322773 GGTATTACCAAGAGATTACTGTTTACC 57.677 37.037 8.03 0.00 38.42 2.85
2416 2762 9.880157 GTATTACCAAGAGATTACTGTTTACCA 57.120 33.333 0.00 0.00 0.00 3.25
2812 3158 4.148825 CCGCCCCTGACCGAAGAG 62.149 72.222 0.00 0.00 0.00 2.85
2814 3160 4.475135 GCCCCTGACCGAAGAGGC 62.475 72.222 0.00 0.00 46.52 4.70
2815 3161 4.148825 CCCCTGACCGAAGAGGCG 62.149 72.222 0.00 0.00 46.52 5.52
2816 3162 4.821589 CCCTGACCGAAGAGGCGC 62.822 72.222 0.00 0.00 46.52 6.53
2851 3202 1.537638 GACACGAAGAGACTGCAGAGA 59.462 52.381 23.35 0.00 0.00 3.10
2890 3241 1.866853 CGCAGCCCAGGTTTTTCCTC 61.867 60.000 0.00 0.00 46.24 3.71
2901 3252 5.351458 CAGGTTTTTCCTCTTTTCTTGTGG 58.649 41.667 0.00 0.00 46.24 4.17
2902 3253 5.023452 AGGTTTTTCCTCTTTTCTTGTGGT 58.977 37.500 0.00 0.00 44.42 4.16
2926 3277 7.364056 GGTTTGTATGGTCTGTGTGGTATAGTA 60.364 40.741 0.00 0.00 0.00 1.82
2953 3310 8.178313 GCCTTCATACTTTCATTCACTTTACTC 58.822 37.037 0.00 0.00 0.00 2.59
3065 3529 0.108615 ACAGCAGAACGATTCTCCCG 60.109 55.000 0.00 0.00 38.11 5.14
3088 3552 4.012374 CAAAGGTCATCACACAGCCTATT 58.988 43.478 0.00 0.00 0.00 1.73
3089 3553 5.185454 CAAAGGTCATCACACAGCCTATTA 58.815 41.667 0.00 0.00 0.00 0.98
3090 3554 5.435686 AAGGTCATCACACAGCCTATTAA 57.564 39.130 0.00 0.00 0.00 1.40
3091 3555 5.636903 AGGTCATCACACAGCCTATTAAT 57.363 39.130 0.00 0.00 0.00 1.40
3092 3556 6.006275 AGGTCATCACACAGCCTATTAATT 57.994 37.500 0.00 0.00 0.00 1.40
3093 3557 7.136822 AGGTCATCACACAGCCTATTAATTA 57.863 36.000 0.00 0.00 0.00 1.40
3094 3558 7.573710 AGGTCATCACACAGCCTATTAATTAA 58.426 34.615 0.00 0.00 0.00 1.40
3095 3559 8.052748 AGGTCATCACACAGCCTATTAATTAAA 58.947 33.333 1.21 0.00 0.00 1.52
3096 3560 8.129211 GGTCATCACACAGCCTATTAATTAAAC 58.871 37.037 1.21 0.00 0.00 2.01
3097 3561 8.129211 GTCATCACACAGCCTATTAATTAAACC 58.871 37.037 1.21 0.00 0.00 3.27
3098 3562 7.284489 TCATCACACAGCCTATTAATTAAACCC 59.716 37.037 1.21 0.00 0.00 4.11
3099 3563 6.486056 TCACACAGCCTATTAATTAAACCCA 58.514 36.000 1.21 0.00 0.00 4.51
3100 3564 7.122715 TCACACAGCCTATTAATTAAACCCAT 58.877 34.615 1.21 0.00 0.00 4.00
3101 3565 7.617723 TCACACAGCCTATTAATTAAACCCATT 59.382 33.333 1.21 0.00 0.00 3.16
3102 3566 8.908903 CACACAGCCTATTAATTAAACCCATTA 58.091 33.333 1.21 0.00 0.00 1.90
3103 3567 9.482175 ACACAGCCTATTAATTAAACCCATTAA 57.518 29.630 1.21 0.00 37.86 1.40
3104 3568 9.965824 CACAGCCTATTAATTAAACCCATTAAG 57.034 33.333 1.21 0.00 36.94 1.85
3105 3569 8.638873 ACAGCCTATTAATTAAACCCATTAAGC 58.361 33.333 1.21 0.00 36.94 3.09
3106 3570 8.637986 CAGCCTATTAATTAAACCCATTAAGCA 58.362 33.333 1.21 0.00 36.94 3.91
3107 3571 9.379770 AGCCTATTAATTAAACCCATTAAGCAT 57.620 29.630 1.21 0.00 36.94 3.79
3108 3572 9.639601 GCCTATTAATTAAACCCATTAAGCATC 57.360 33.333 1.21 0.00 36.94 3.91
3109 3573 9.840427 CCTATTAATTAAACCCATTAAGCATCG 57.160 33.333 1.21 0.00 36.94 3.84
3110 3574 9.840427 CTATTAATTAAACCCATTAAGCATCGG 57.160 33.333 1.21 0.00 36.94 4.18
3111 3575 5.529581 AATTAAACCCATTAAGCATCGGG 57.470 39.130 0.00 0.00 44.88 5.14
3112 3576 2.818751 AAACCCATTAAGCATCGGGA 57.181 45.000 0.00 0.00 41.62 5.14
3113 3577 2.348411 AACCCATTAAGCATCGGGAG 57.652 50.000 0.00 0.00 41.62 4.30
3114 3578 1.507140 ACCCATTAAGCATCGGGAGA 58.493 50.000 0.00 0.00 41.62 3.71
3115 3579 6.694086 ATTAAACCCATTAAGCATCGGGAGAT 60.694 38.462 0.00 0.00 42.68 2.75
3116 3580 8.130675 ATTAAACCCATTAAGCATCGGGAGATT 61.131 37.037 0.00 0.00 41.24 2.40
3126 3590 3.140814 GGGAGATTGGCGGCCAAC 61.141 66.667 34.85 26.14 46.95 3.77
3127 3591 3.140814 GGAGATTGGCGGCCAACC 61.141 66.667 34.85 27.34 46.95 3.77
3128 3592 2.361104 GAGATTGGCGGCCAACCA 60.361 61.111 34.85 15.76 46.95 3.67
3129 3593 2.361610 AGATTGGCGGCCAACCAG 60.362 61.111 34.85 0.00 46.95 4.00
3130 3594 4.133796 GATTGGCGGCCAACCAGC 62.134 66.667 34.85 20.42 46.95 4.85
3131 3595 4.684134 ATTGGCGGCCAACCAGCT 62.684 61.111 34.85 17.41 46.95 4.24
3132 3596 3.280938 ATTGGCGGCCAACCAGCTA 62.281 57.895 34.85 13.34 46.95 3.32
3133 3597 2.572333 ATTGGCGGCCAACCAGCTAT 62.572 55.000 34.85 15.89 46.95 2.97
3134 3598 3.211963 GGCGGCCAACCAGCTATG 61.212 66.667 15.62 0.00 36.24 2.23
3135 3599 3.892581 GCGGCCAACCAGCTATGC 61.893 66.667 2.24 0.00 34.11 3.14
3136 3600 3.211963 CGGCCAACCAGCTATGCC 61.212 66.667 2.24 0.00 38.74 4.40
3137 3601 2.044053 GGCCAACCAGCTATGCCA 60.044 61.111 0.00 0.00 41.76 4.92
3138 3602 2.418083 GGCCAACCAGCTATGCCAC 61.418 63.158 0.00 0.00 41.76 5.01
3139 3603 1.678635 GCCAACCAGCTATGCCACA 60.679 57.895 0.00 0.00 0.00 4.17
3140 3604 1.039233 GCCAACCAGCTATGCCACAT 61.039 55.000 0.00 0.00 0.00 3.21
3141 3605 0.742505 CCAACCAGCTATGCCACATG 59.257 55.000 0.00 0.00 0.00 3.21
3142 3606 0.742505 CAACCAGCTATGCCACATGG 59.257 55.000 0.00 0.00 37.07 3.66
3161 3625 4.347453 GCAAGCTGGTTGGCCGTG 62.347 66.667 19.87 0.00 36.56 4.94
3162 3626 3.673484 CAAGCTGGTTGGCCGTGG 61.673 66.667 11.59 0.00 37.67 4.94
3163 3627 4.204028 AAGCTGGTTGGCCGTGGT 62.204 61.111 0.00 0.00 37.67 4.16
3164 3628 4.954970 AGCTGGTTGGCCGTGGTG 62.955 66.667 0.00 0.00 37.67 4.17
3165 3629 4.947147 GCTGGTTGGCCGTGGTGA 62.947 66.667 0.00 0.00 37.67 4.02
3166 3630 2.669569 CTGGTTGGCCGTGGTGAG 60.670 66.667 0.00 0.00 37.67 3.51
3167 3631 3.164977 TGGTTGGCCGTGGTGAGA 61.165 61.111 0.00 0.00 37.67 3.27
3168 3632 2.112297 GGTTGGCCGTGGTGAGAA 59.888 61.111 0.00 0.00 0.00 2.87
3169 3633 1.527380 GGTTGGCCGTGGTGAGAAA 60.527 57.895 0.00 0.00 0.00 2.52
3170 3634 1.515521 GGTTGGCCGTGGTGAGAAAG 61.516 60.000 0.00 0.00 0.00 2.62
3171 3635 1.896660 TTGGCCGTGGTGAGAAAGC 60.897 57.895 0.00 0.00 0.00 3.51
3172 3636 2.032681 GGCCGTGGTGAGAAAGCT 59.967 61.111 0.00 0.00 0.00 3.74
3173 3637 1.600916 GGCCGTGGTGAGAAAGCTT 60.601 57.895 0.00 0.00 0.00 3.74
3174 3638 1.172812 GGCCGTGGTGAGAAAGCTTT 61.173 55.000 12.53 12.53 0.00 3.51
3175 3639 0.668535 GCCGTGGTGAGAAAGCTTTT 59.331 50.000 14.05 3.35 0.00 2.27
3176 3640 1.600413 GCCGTGGTGAGAAAGCTTTTG 60.600 52.381 14.05 0.00 0.00 2.44
3177 3641 1.001378 CCGTGGTGAGAAAGCTTTTGG 60.001 52.381 14.05 2.28 0.00 3.28
3178 3642 1.946768 CGTGGTGAGAAAGCTTTTGGA 59.053 47.619 14.05 0.00 0.00 3.53
3179 3643 2.357637 CGTGGTGAGAAAGCTTTTGGAA 59.642 45.455 14.05 0.00 0.00 3.53
3180 3644 3.181491 CGTGGTGAGAAAGCTTTTGGAAA 60.181 43.478 14.05 0.00 0.00 3.13
3181 3645 4.676723 CGTGGTGAGAAAGCTTTTGGAAAA 60.677 41.667 14.05 0.00 0.00 2.29
3182 3646 5.175127 GTGGTGAGAAAGCTTTTGGAAAAA 58.825 37.500 14.05 0.00 0.00 1.94
3183 3647 5.817296 GTGGTGAGAAAGCTTTTGGAAAAAT 59.183 36.000 14.05 0.00 0.00 1.82
3184 3648 6.018751 GTGGTGAGAAAGCTTTTGGAAAAATC 60.019 38.462 14.05 0.00 0.00 2.17
3185 3649 6.127083 TGGTGAGAAAGCTTTTGGAAAAATCT 60.127 34.615 14.05 1.88 0.00 2.40
3186 3650 6.763135 GGTGAGAAAGCTTTTGGAAAAATCTT 59.237 34.615 14.05 0.00 0.00 2.40
3187 3651 7.280876 GGTGAGAAAGCTTTTGGAAAAATCTTT 59.719 33.333 14.05 11.85 35.43 2.52
3188 3652 9.313118 GTGAGAAAGCTTTTGGAAAAATCTTTA 57.687 29.630 14.05 0.00 34.16 1.85
3189 3653 9.533253 TGAGAAAGCTTTTGGAAAAATCTTTAG 57.467 29.630 14.05 0.00 34.16 1.85
3190 3654 9.750125 GAGAAAGCTTTTGGAAAAATCTTTAGA 57.250 29.630 14.05 0.00 34.16 2.10
3193 3657 8.837788 AAGCTTTTGGAAAAATCTTTAGATGG 57.162 30.769 0.00 0.00 34.49 3.51
3194 3658 8.193953 AGCTTTTGGAAAAATCTTTAGATGGA 57.806 30.769 0.00 0.00 34.49 3.41
3195 3659 8.309656 AGCTTTTGGAAAAATCTTTAGATGGAG 58.690 33.333 0.00 0.00 34.49 3.86
3196 3660 7.547019 GCTTTTGGAAAAATCTTTAGATGGAGG 59.453 37.037 0.00 0.00 34.49 4.30
3197 3661 8.491045 TTTTGGAAAAATCTTTAGATGGAGGT 57.509 30.769 0.00 0.00 34.49 3.85
3198 3662 7.466746 TTGGAAAAATCTTTAGATGGAGGTG 57.533 36.000 0.00 0.00 34.49 4.00
3199 3663 6.552008 TGGAAAAATCTTTAGATGGAGGTGT 58.448 36.000 0.00 0.00 34.49 4.16
3200 3664 6.434028 TGGAAAAATCTTTAGATGGAGGTGTG 59.566 38.462 0.00 0.00 34.49 3.82
3201 3665 6.127619 GGAAAAATCTTTAGATGGAGGTGTGG 60.128 42.308 0.00 0.00 34.49 4.17
3202 3666 5.779241 AAATCTTTAGATGGAGGTGTGGA 57.221 39.130 0.00 0.00 34.49 4.02
3203 3667 5.983333 AATCTTTAGATGGAGGTGTGGAT 57.017 39.130 0.00 0.00 34.49 3.41
3204 3668 5.983333 ATCTTTAGATGGAGGTGTGGATT 57.017 39.130 0.00 0.00 32.68 3.01
3205 3669 7.451731 AATCTTTAGATGGAGGTGTGGATTA 57.548 36.000 0.00 0.00 34.49 1.75
3206 3670 6.884472 TCTTTAGATGGAGGTGTGGATTAA 57.116 37.500 0.00 0.00 0.00 1.40
3207 3671 7.265599 TCTTTAGATGGAGGTGTGGATTAAA 57.734 36.000 0.00 0.00 0.00 1.52
3208 3672 7.110155 TCTTTAGATGGAGGTGTGGATTAAAC 58.890 38.462 0.00 0.00 0.00 2.01
3209 3673 4.236527 AGATGGAGGTGTGGATTAAACC 57.763 45.455 0.00 0.00 0.00 3.27
3210 3674 2.891191 TGGAGGTGTGGATTAAACCC 57.109 50.000 0.00 0.00 34.29 4.11
3211 3675 2.066592 TGGAGGTGTGGATTAAACCCA 58.933 47.619 0.00 0.00 34.29 4.51
3212 3676 2.652348 TGGAGGTGTGGATTAAACCCAT 59.348 45.455 0.00 0.00 35.91 4.00
3213 3677 3.076785 TGGAGGTGTGGATTAAACCCATT 59.923 43.478 0.00 0.00 35.91 3.16
3214 3678 4.292571 TGGAGGTGTGGATTAAACCCATTA 59.707 41.667 0.00 0.00 35.91 1.90
3215 3679 5.222358 TGGAGGTGTGGATTAAACCCATTAA 60.222 40.000 0.00 0.00 37.86 1.40
3216 3680 5.359860 GGAGGTGTGGATTAAACCCATTAAG 59.640 44.000 0.00 0.00 36.94 1.85
3217 3681 4.709886 AGGTGTGGATTAAACCCATTAAGC 59.290 41.667 0.00 1.83 38.80 3.09
3218 3682 4.464597 GGTGTGGATTAAACCCATTAAGCA 59.535 41.667 0.00 0.00 40.78 3.91
3219 3683 5.128663 GGTGTGGATTAAACCCATTAAGCAT 59.871 40.000 0.00 0.00 40.78 3.79
3220 3684 6.273071 GTGTGGATTAAACCCATTAAGCATC 58.727 40.000 0.00 0.00 40.78 3.91
3221 3685 5.954752 TGTGGATTAAACCCATTAAGCATCA 59.045 36.000 0.00 0.00 40.78 3.07
3222 3686 6.096705 TGTGGATTAAACCCATTAAGCATCAG 59.903 38.462 0.00 0.00 40.78 2.90
3223 3687 5.598005 TGGATTAAACCCATTAAGCATCAGG 59.402 40.000 0.00 0.00 40.78 3.86
3224 3688 5.833131 GGATTAAACCCATTAAGCATCAGGA 59.167 40.000 0.00 0.00 40.78 3.86
3225 3689 6.015940 GGATTAAACCCATTAAGCATCAGGAG 60.016 42.308 0.00 0.00 40.78 3.69
3226 3690 4.591321 AAACCCATTAAGCATCAGGAGA 57.409 40.909 0.00 0.00 0.00 3.71
3227 3691 4.803329 AACCCATTAAGCATCAGGAGAT 57.197 40.909 0.00 0.00 33.87 2.75
3228 3692 4.803329 ACCCATTAAGCATCAGGAGATT 57.197 40.909 0.00 0.00 30.20 2.40
3229 3693 4.467769 ACCCATTAAGCATCAGGAGATTG 58.532 43.478 0.00 0.00 30.20 2.67
3230 3694 3.825014 CCCATTAAGCATCAGGAGATTGG 59.175 47.826 0.00 0.00 30.20 3.16
3231 3695 4.467769 CCATTAAGCATCAGGAGATTGGT 58.532 43.478 0.00 0.00 30.20 3.67
3232 3696 4.277672 CCATTAAGCATCAGGAGATTGGTG 59.722 45.833 0.00 0.00 30.20 4.17
3233 3697 2.431954 AAGCATCAGGAGATTGGTGG 57.568 50.000 0.00 0.00 30.20 4.61
3234 3698 0.106819 AGCATCAGGAGATTGGTGGC 60.107 55.000 0.00 0.00 30.20 5.01
3235 3699 1.105759 GCATCAGGAGATTGGTGGCC 61.106 60.000 0.00 0.00 30.20 5.36
3236 3700 0.256752 CATCAGGAGATTGGTGGCCA 59.743 55.000 0.00 0.00 30.20 5.36
3238 3702 0.038166 TCAGGAGATTGGTGGCCAAC 59.962 55.000 15.99 15.99 46.95 3.77
3239 3703 0.038744 CAGGAGATTGGTGGCCAACT 59.961 55.000 24.13 0.98 46.95 3.16
3240 3704 1.281867 CAGGAGATTGGTGGCCAACTA 59.718 52.381 24.13 16.26 46.95 2.24
3241 3705 1.561542 AGGAGATTGGTGGCCAACTAG 59.438 52.381 24.13 0.00 46.95 2.57
3242 3706 1.383523 GAGATTGGTGGCCAACTAGC 58.616 55.000 24.13 18.41 46.95 3.42
3243 3707 0.995024 AGATTGGTGGCCAACTAGCT 59.005 50.000 24.13 20.73 46.95 3.32
3244 3708 2.170607 GAGATTGGTGGCCAACTAGCTA 59.829 50.000 22.91 0.00 46.95 3.32
3245 3709 2.780010 AGATTGGTGGCCAACTAGCTAT 59.220 45.455 21.64 6.90 46.95 2.97
3246 3710 2.418368 TTGGTGGCCAACTAGCTATG 57.582 50.000 24.13 0.00 38.75 2.23
3247 3711 0.107214 TGGTGGCCAACTAGCTATGC 60.107 55.000 24.13 0.00 0.00 3.14
3248 3712 0.819666 GGTGGCCAACTAGCTATGCC 60.820 60.000 15.48 13.79 42.49 4.40
3250 3714 0.107214 TGGCCAACTAGCTATGCCAC 60.107 55.000 17.52 0.00 46.57 5.01
3251 3715 1.160329 GGCCAACTAGCTATGCCACG 61.160 60.000 15.11 0.00 41.76 4.94
3252 3716 0.462047 GCCAACTAGCTATGCCACGT 60.462 55.000 0.00 0.00 0.00 4.49
3253 3717 1.290203 CCAACTAGCTATGCCACGTG 58.710 55.000 9.08 9.08 0.00 4.49
3254 3718 1.290203 CAACTAGCTATGCCACGTGG 58.710 55.000 30.66 30.66 38.53 4.94
3272 3736 3.376078 CGCAAGCTGGTTGGCCAT 61.376 61.111 19.87 0.00 45.05 4.40
3273 3737 2.263540 GCAAGCTGGTTGGCCATG 59.736 61.111 19.87 0.00 45.05 3.66
3274 3738 2.975536 CAAGCTGGTTGGCCATGG 59.024 61.111 6.09 7.63 45.05 3.66
3275 3739 1.909781 CAAGCTGGTTGGCCATGGT 60.910 57.895 14.67 0.00 45.05 3.55
3276 3740 1.909781 AAGCTGGTTGGCCATGGTG 60.910 57.895 14.67 0.00 45.05 4.17
3277 3741 2.283101 GCTGGTTGGCCATGGTGA 60.283 61.111 14.67 0.00 45.05 4.02
3278 3742 2.345760 GCTGGTTGGCCATGGTGAG 61.346 63.158 14.67 0.00 45.05 3.51
3279 3743 1.379916 CTGGTTGGCCATGGTGAGA 59.620 57.895 14.67 0.00 45.05 3.27
3280 3744 0.251297 CTGGTTGGCCATGGTGAGAA 60.251 55.000 14.67 0.00 45.05 2.87
3281 3745 0.187117 TGGTTGGCCATGGTGAGAAA 59.813 50.000 14.67 0.00 40.46 2.52
3282 3746 0.890683 GGTTGGCCATGGTGAGAAAG 59.109 55.000 14.67 0.00 34.09 2.62
3283 3747 0.244721 GTTGGCCATGGTGAGAAAGC 59.755 55.000 14.67 0.00 0.00 3.51
3284 3748 0.112995 TTGGCCATGGTGAGAAAGCT 59.887 50.000 14.67 0.00 0.00 3.74
3285 3749 0.112995 TGGCCATGGTGAGAAAGCTT 59.887 50.000 14.67 0.00 0.00 3.74
3286 3750 1.260544 GGCCATGGTGAGAAAGCTTT 58.739 50.000 12.53 12.53 0.00 3.51
3287 3751 1.620323 GGCCATGGTGAGAAAGCTTTT 59.380 47.619 14.05 3.35 0.00 2.27
3288 3752 2.611224 GGCCATGGTGAGAAAGCTTTTG 60.611 50.000 14.05 5.49 0.00 2.44
3289 3753 2.611224 GCCATGGTGAGAAAGCTTTTGG 60.611 50.000 14.05 15.36 0.00 3.28
3290 3754 2.892852 CCATGGTGAGAAAGCTTTTGGA 59.107 45.455 14.05 0.00 0.00 3.53
3291 3755 3.321682 CCATGGTGAGAAAGCTTTTGGAA 59.678 43.478 14.05 0.00 0.00 3.53
3292 3756 4.020839 CCATGGTGAGAAAGCTTTTGGAAT 60.021 41.667 14.05 0.61 0.00 3.01
3293 3757 5.185635 CCATGGTGAGAAAGCTTTTGGAATA 59.814 40.000 14.05 0.05 0.00 1.75
3294 3758 6.295236 CCATGGTGAGAAAGCTTTTGGAATAA 60.295 38.462 14.05 0.00 0.00 1.40
3295 3759 6.916360 TGGTGAGAAAGCTTTTGGAATAAT 57.084 33.333 14.05 0.00 0.00 1.28
3296 3760 7.301868 TGGTGAGAAAGCTTTTGGAATAATT 57.698 32.000 14.05 0.00 0.00 1.40
3297 3761 7.734942 TGGTGAGAAAGCTTTTGGAATAATTT 58.265 30.769 14.05 0.00 0.00 1.82
3298 3762 7.872483 TGGTGAGAAAGCTTTTGGAATAATTTC 59.128 33.333 14.05 0.00 0.00 2.17
3299 3763 8.090831 GGTGAGAAAGCTTTTGGAATAATTTCT 58.909 33.333 14.05 0.51 38.01 2.52
3306 3770 9.479549 AAGCTTTTGGAATAATTTCTAGATGGA 57.520 29.630 0.00 0.00 32.16 3.41
3307 3771 9.129532 AGCTTTTGGAATAATTTCTAGATGGAG 57.870 33.333 0.00 0.00 32.16 3.86
3308 3772 8.355913 GCTTTTGGAATAATTTCTAGATGGAGG 58.644 37.037 0.00 0.00 32.16 4.30
3309 3773 9.413734 CTTTTGGAATAATTTCTAGATGGAGGT 57.586 33.333 0.00 0.00 32.16 3.85
3310 3774 8.752005 TTTGGAATAATTTCTAGATGGAGGTG 57.248 34.615 0.00 0.00 32.16 4.00
3311 3775 7.451731 TGGAATAATTTCTAGATGGAGGTGT 57.548 36.000 0.00 0.00 32.16 4.16
3312 3776 7.282585 TGGAATAATTTCTAGATGGAGGTGTG 58.717 38.462 0.00 0.00 32.16 3.82
3313 3777 7.127186 TGGAATAATTTCTAGATGGAGGTGTGA 59.873 37.037 0.00 0.00 32.16 3.58
3314 3778 7.993183 GGAATAATTTCTAGATGGAGGTGTGAA 59.007 37.037 0.00 0.00 32.16 3.18
3315 3779 9.566432 GAATAATTTCTAGATGGAGGTGTGAAT 57.434 33.333 0.00 0.00 0.00 2.57
3316 3780 9.927081 AATAATTTCTAGATGGAGGTGTGAATT 57.073 29.630 0.00 0.00 0.00 2.17
3317 3781 9.927081 ATAATTTCTAGATGGAGGTGTGAATTT 57.073 29.630 0.00 0.00 0.00 1.82
3318 3782 8.655935 AATTTCTAGATGGAGGTGTGAATTTT 57.344 30.769 0.00 0.00 0.00 1.82
3319 3783 8.655935 ATTTCTAGATGGAGGTGTGAATTTTT 57.344 30.769 0.00 0.00 0.00 1.94
3349 3813 2.773993 TTTAGATGGTGGTCCGAACC 57.226 50.000 0.00 0.00 46.66 3.62
3350 3814 0.906775 TTAGATGGTGGTCCGAACCC 59.093 55.000 0.00 0.00 45.83 4.11
3351 3815 0.979187 TAGATGGTGGTCCGAACCCC 60.979 60.000 0.00 0.00 45.83 4.95
3352 3816 2.530661 ATGGTGGTCCGAACCCCA 60.531 61.111 3.62 3.62 45.83 4.96
3353 3817 1.928567 ATGGTGGTCCGAACCCCAT 60.929 57.895 7.82 7.82 44.66 4.00
3354 3818 2.045340 GGTGGTCCGAACCCCATG 60.045 66.667 0.00 0.00 45.83 3.66
3355 3819 2.754375 GTGGTCCGAACCCCATGT 59.246 61.111 0.00 0.00 45.83 3.21
3356 3820 1.555477 GGTGGTCCGAACCCCATGTA 61.555 60.000 0.00 0.00 45.83 2.29
3357 3821 0.544697 GTGGTCCGAACCCCATGTAT 59.455 55.000 0.00 0.00 45.83 2.29
3358 3822 1.064979 GTGGTCCGAACCCCATGTATT 60.065 52.381 0.00 0.00 45.83 1.89
3359 3823 1.636519 TGGTCCGAACCCCATGTATTT 59.363 47.619 0.00 0.00 45.83 1.40
3360 3824 2.041891 TGGTCCGAACCCCATGTATTTT 59.958 45.455 0.00 0.00 45.83 1.82
3361 3825 3.093814 GGTCCGAACCCCATGTATTTTT 58.906 45.455 0.00 0.00 39.93 1.94
3387 3851 1.385528 GGGGGTTATGTAAAGTGGCG 58.614 55.000 0.00 0.00 0.00 5.69
3388 3852 0.736636 GGGGTTATGTAAAGTGGCGC 59.263 55.000 0.00 0.00 0.00 6.53
3389 3853 1.680860 GGGGTTATGTAAAGTGGCGCT 60.681 52.381 7.64 0.00 0.00 5.92
3390 3854 1.669265 GGGTTATGTAAAGTGGCGCTC 59.331 52.381 7.64 0.45 0.00 5.03
3391 3855 1.326548 GGTTATGTAAAGTGGCGCTCG 59.673 52.381 7.64 0.00 0.00 5.03
3392 3856 1.997606 GTTATGTAAAGTGGCGCTCGT 59.002 47.619 7.64 0.00 0.00 4.18
3393 3857 1.917273 TATGTAAAGTGGCGCTCGTC 58.083 50.000 7.64 0.00 0.00 4.20
3394 3858 0.037697 ATGTAAAGTGGCGCTCGTCA 60.038 50.000 7.64 1.21 0.00 4.35
3395 3859 0.666274 TGTAAAGTGGCGCTCGTCAG 60.666 55.000 7.64 0.00 0.00 3.51
3396 3860 0.666577 GTAAAGTGGCGCTCGTCAGT 60.667 55.000 7.64 0.00 34.49 3.41
3397 3861 0.883153 TAAAGTGGCGCTCGTCAGTA 59.117 50.000 7.64 0.00 32.50 2.74
3398 3862 0.388649 AAAGTGGCGCTCGTCAGTAG 60.389 55.000 7.64 0.00 32.50 2.57
3399 3863 2.202623 GTGGCGCTCGTCAGTAGG 60.203 66.667 7.64 0.00 0.00 3.18
3400 3864 4.129737 TGGCGCTCGTCAGTAGGC 62.130 66.667 7.64 0.00 0.00 3.93
3401 3865 3.827898 GGCGCTCGTCAGTAGGCT 61.828 66.667 7.64 0.00 0.00 4.58
3402 3866 2.478890 GGCGCTCGTCAGTAGGCTA 61.479 63.158 7.64 0.00 0.00 3.93
3403 3867 1.298488 GCGCTCGTCAGTAGGCTAC 60.298 63.158 16.93 16.93 0.00 3.58
3404 3868 1.011019 CGCTCGTCAGTAGGCTACG 60.011 63.158 18.41 10.03 37.96 3.51
3405 3869 1.355916 GCTCGTCAGTAGGCTACGG 59.644 63.158 18.41 17.84 37.24 4.02
3406 3870 1.375098 GCTCGTCAGTAGGCTACGGT 61.375 60.000 21.44 2.78 37.24 4.83
3407 3871 0.377554 CTCGTCAGTAGGCTACGGTG 59.622 60.000 21.44 14.50 37.24 4.94
3408 3872 1.226603 CGTCAGTAGGCTACGGTGC 60.227 63.158 21.44 15.16 33.13 5.01
3409 3873 1.654954 CGTCAGTAGGCTACGGTGCT 61.655 60.000 21.44 1.33 33.13 4.40
3410 3874 1.386533 GTCAGTAGGCTACGGTGCTA 58.613 55.000 21.44 2.68 0.00 3.49
3411 3875 1.747355 GTCAGTAGGCTACGGTGCTAA 59.253 52.381 21.44 2.33 0.00 3.09
3412 3876 2.361438 GTCAGTAGGCTACGGTGCTAAT 59.639 50.000 21.44 0.00 0.00 1.73
3413 3877 3.028850 TCAGTAGGCTACGGTGCTAATT 58.971 45.455 21.44 0.00 0.00 1.40
3414 3878 3.449737 TCAGTAGGCTACGGTGCTAATTT 59.550 43.478 21.44 0.00 0.00 1.82
3415 3879 4.081309 TCAGTAGGCTACGGTGCTAATTTT 60.081 41.667 21.44 0.00 0.00 1.82
3416 3880 4.634443 CAGTAGGCTACGGTGCTAATTTTT 59.366 41.667 18.41 0.00 0.00 1.94
3454 3918 8.450578 TTTTACTTCTTTTCTCAGATGCAAGA 57.549 30.769 0.00 0.00 0.00 3.02
3455 3919 8.627208 TTTACTTCTTTTCTCAGATGCAAGAT 57.373 30.769 0.00 0.00 0.00 2.40
3456 3920 6.497785 ACTTCTTTTCTCAGATGCAAGATG 57.502 37.500 0.00 0.00 0.00 2.90
3457 3921 5.415077 ACTTCTTTTCTCAGATGCAAGATGG 59.585 40.000 0.00 0.00 0.00 3.51
3458 3922 5.169992 TCTTTTCTCAGATGCAAGATGGA 57.830 39.130 0.00 0.00 0.00 3.41
3459 3923 5.183969 TCTTTTCTCAGATGCAAGATGGAG 58.816 41.667 0.00 0.00 0.00 3.86
3460 3924 3.555527 TTCTCAGATGCAAGATGGAGG 57.444 47.619 0.00 0.00 0.00 4.30
3461 3925 2.475155 TCTCAGATGCAAGATGGAGGT 58.525 47.619 0.00 0.00 0.00 3.85
3462 3926 2.169978 TCTCAGATGCAAGATGGAGGTG 59.830 50.000 0.00 0.00 0.00 4.00
3463 3927 2.169978 CTCAGATGCAAGATGGAGGTGA 59.830 50.000 0.00 0.00 0.00 4.02
3464 3928 2.169978 TCAGATGCAAGATGGAGGTGAG 59.830 50.000 0.00 0.00 0.00 3.51
3465 3929 1.489649 AGATGCAAGATGGAGGTGAGG 59.510 52.381 0.00 0.00 0.00 3.86
3466 3930 1.487976 GATGCAAGATGGAGGTGAGGA 59.512 52.381 0.00 0.00 0.00 3.71
3467 3931 1.588239 TGCAAGATGGAGGTGAGGAT 58.412 50.000 0.00 0.00 0.00 3.24
3468 3932 1.918262 TGCAAGATGGAGGTGAGGATT 59.082 47.619 0.00 0.00 0.00 3.01
3469 3933 2.309755 TGCAAGATGGAGGTGAGGATTT 59.690 45.455 0.00 0.00 0.00 2.17
3470 3934 3.245371 TGCAAGATGGAGGTGAGGATTTT 60.245 43.478 0.00 0.00 0.00 1.82
3471 3935 3.766051 GCAAGATGGAGGTGAGGATTTTT 59.234 43.478 0.00 0.00 0.00 1.94
3507 3971 4.650754 TTTTGTAGATAGAGGCGAGGAC 57.349 45.455 0.00 0.00 0.00 3.85
3508 3972 2.273538 TGTAGATAGAGGCGAGGACC 57.726 55.000 0.00 0.00 0.00 4.46
3509 3973 1.775459 TGTAGATAGAGGCGAGGACCT 59.225 52.381 0.00 0.00 45.04 3.85
3515 3979 4.136978 AGGCGAGGACCTCATGTT 57.863 55.556 21.49 0.86 33.62 2.71
3516 3980 2.377136 AGGCGAGGACCTCATGTTT 58.623 52.632 21.49 0.00 33.62 2.83
3517 3981 0.693049 AGGCGAGGACCTCATGTTTT 59.307 50.000 21.49 0.00 33.62 2.43
3518 3982 1.073923 AGGCGAGGACCTCATGTTTTT 59.926 47.619 21.49 0.00 33.62 1.94
3538 4002 4.424476 TTTTAAATGAAAACGCACGCAC 57.576 36.364 0.00 0.00 31.90 5.34
3539 4003 2.757686 TAAATGAAAACGCACGCACA 57.242 40.000 0.00 0.00 0.00 4.57
3540 4004 1.914634 AAATGAAAACGCACGCACAA 58.085 40.000 0.00 0.00 0.00 3.33
3541 4005 2.132740 AATGAAAACGCACGCACAAT 57.867 40.000 0.00 0.00 0.00 2.71
3542 4006 2.132740 ATGAAAACGCACGCACAATT 57.867 40.000 0.00 0.00 0.00 2.32
3543 4007 1.914634 TGAAAACGCACGCACAATTT 58.085 40.000 0.00 0.00 0.00 1.82
3544 4008 2.263077 TGAAAACGCACGCACAATTTT 58.737 38.095 0.00 0.00 0.00 1.82
3545 4009 2.280183 TGAAAACGCACGCACAATTTTC 59.720 40.909 8.16 8.16 38.93 2.29
3546 4010 2.202295 AAACGCACGCACAATTTTCT 57.798 40.000 0.00 0.00 0.00 2.52
3547 4011 1.753956 AACGCACGCACAATTTTCTC 58.246 45.000 0.00 0.00 0.00 2.87
3548 4012 0.944386 ACGCACGCACAATTTTCTCT 59.056 45.000 0.00 0.00 0.00 3.10
3549 4013 1.069906 ACGCACGCACAATTTTCTCTC 60.070 47.619 0.00 0.00 0.00 3.20
3550 4014 1.069973 CGCACGCACAATTTTCTCTCA 60.070 47.619 0.00 0.00 0.00 3.27
3551 4015 2.601979 CGCACGCACAATTTTCTCTCAA 60.602 45.455 0.00 0.00 0.00 3.02
3552 4016 2.975851 GCACGCACAATTTTCTCTCAAG 59.024 45.455 0.00 0.00 0.00 3.02
3553 4017 2.975851 CACGCACAATTTTCTCTCAAGC 59.024 45.455 0.00 0.00 0.00 4.01
3554 4018 2.236690 CGCACAATTTTCTCTCAAGCG 58.763 47.619 0.00 0.00 36.62 4.68
3555 4019 2.589014 GCACAATTTTCTCTCAAGCGG 58.411 47.619 0.00 0.00 0.00 5.52
3556 4020 2.589014 CACAATTTTCTCTCAAGCGGC 58.411 47.619 0.00 0.00 0.00 6.53
3557 4021 2.030893 CACAATTTTCTCTCAAGCGGCA 60.031 45.455 1.45 0.00 0.00 5.69
3558 4022 2.030805 ACAATTTTCTCTCAAGCGGCAC 60.031 45.455 1.45 0.00 0.00 5.01
3559 4023 1.168714 ATTTTCTCTCAAGCGGCACC 58.831 50.000 1.45 0.00 0.00 5.01
3560 4024 0.179032 TTTTCTCTCAAGCGGCACCA 60.179 50.000 1.45 0.00 0.00 4.17
3561 4025 0.884704 TTTCTCTCAAGCGGCACCAC 60.885 55.000 1.45 0.00 0.00 4.16
3562 4026 2.031012 CTCTCAAGCGGCACCACA 59.969 61.111 1.45 0.00 0.00 4.17
3563 4027 2.031012 TCTCAAGCGGCACCACAG 59.969 61.111 1.45 0.00 0.00 3.66
3564 4028 3.052082 CTCAAGCGGCACCACAGG 61.052 66.667 1.45 0.00 0.00 4.00
3565 4029 4.641645 TCAAGCGGCACCACAGGG 62.642 66.667 1.45 0.00 41.29 4.45
3583 4047 3.166434 TGGCACCCCAACCACTAG 58.834 61.111 0.00 0.00 38.46 2.57
3584 4048 1.772567 TGGCACCCCAACCACTAGT 60.773 57.895 0.00 0.00 38.46 2.57
3635 4099 0.038159 CGAGCTTTTGGAGACCGAGT 60.038 55.000 0.00 0.00 0.00 4.18
3649 4113 0.526662 CCGAGTTACAAGGAGCTCGT 59.473 55.000 15.74 5.12 46.30 4.18
3657 4121 3.971032 ACAAGGAGCTCGTTTTCAAAG 57.029 42.857 18.66 9.27 0.00 2.77
3670 4134 7.565789 GCTCGTTTTCAAAGTGCAATTTTCTAG 60.566 37.037 9.83 0.00 0.00 2.43
3673 4137 7.558991 GTTTTCAAAGTGCAATTTTCTAGAGC 58.441 34.615 9.83 0.00 0.00 4.09
3677 4141 3.664107 AGTGCAATTTTCTAGAGCGTGA 58.336 40.909 0.00 0.00 0.00 4.35
3715 4179 5.717038 TTGTGAACACTCATACGCATATG 57.283 39.130 0.00 0.00 39.79 1.78
3717 4181 5.897050 TGTGAACACTCATACGCATATGTA 58.103 37.500 4.29 0.00 39.48 2.29
3718 4182 6.512297 TGTGAACACTCATACGCATATGTAT 58.488 36.000 4.29 0.00 39.48 2.29
3720 4184 8.138712 TGTGAACACTCATACGCATATGTATTA 58.861 33.333 4.29 0.00 39.48 0.98
3721 4185 8.425491 GTGAACACTCATACGCATATGTATTAC 58.575 37.037 4.29 0.00 39.48 1.89
3722 4186 8.138712 TGAACACTCATACGCATATGTATTACA 58.861 33.333 4.29 0.00 39.48 2.41
3762 4226 3.323243 ACAGTATACTTTCACACGTGGC 58.677 45.455 21.57 0.00 0.00 5.01
3775 4239 0.248458 ACGTGGCGTGCAAAAAGAAG 60.248 50.000 0.00 0.00 39.18 2.85
3786 4250 6.363357 GCGTGCAAAAAGAAGAAGACAAATAT 59.637 34.615 0.00 0.00 0.00 1.28
3788 4252 9.559958 CGTGCAAAAAGAAGAAGACAAATATAT 57.440 29.630 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.045340 GCGGTTAGGCCACCACAT 60.045 61.111 12.51 0.00 36.49 3.21
87 88 2.349438 GGTACGTTGCAACTGACATGTG 60.349 50.000 26.09 11.14 0.00 3.21
104 105 6.430000 ACAACCAACTATCACTGATTTGGTAC 59.570 38.462 21.12 0.00 40.27 3.34
166 167 8.383175 TCTAGAGTTTTACCCATCAGAAACATT 58.617 33.333 0.00 0.00 35.13 2.71
211 212 4.301072 AGCCACTAAAGCATTTCACCTA 57.699 40.909 0.00 0.00 40.09 3.08
213 214 3.942130 AAGCCACTAAAGCATTTCACC 57.058 42.857 0.00 0.00 40.09 4.02
225 226 2.823924 TCGTAACAGCAAAGCCACTA 57.176 45.000 0.00 0.00 0.00 2.74
267 268 7.722949 TCCAAAGATAAATGCTCCAGATTTT 57.277 32.000 0.00 0.00 0.00 1.82
305 306 5.913137 TGGGCTAAATTTAACAGTGGATG 57.087 39.130 0.00 0.00 0.00 3.51
306 307 8.782137 ATTATGGGCTAAATTTAACAGTGGAT 57.218 30.769 0.00 0.00 0.00 3.41
341 342 6.289064 AGGTTCAGAAACACTAACAGGTAAG 58.711 40.000 0.00 0.00 37.10 2.34
411 412 4.404507 TTCAAGTTCAAATACTGCTCGC 57.595 40.909 0.00 0.00 0.00 5.03
465 466 9.230122 TGAATTCTGACTGCAAATAGTTAATGA 57.770 29.630 7.05 0.00 0.00 2.57
485 486 9.881649 TCTATATAGACAAGATGGCATGAATTC 57.118 33.333 3.81 0.00 0.00 2.17
718 720 7.145932 ACTTTGTCCTAGTCAAAATACATGC 57.854 36.000 10.19 0.00 34.96 4.06
855 863 1.348696 TCATCAGCCTTCAACAGCAGA 59.651 47.619 0.00 0.00 0.00 4.26
1087 1095 9.299963 TGAATAGTGATTTTCAACAAAACTGTG 57.700 29.630 0.00 0.00 34.24 3.66
1717 1729 6.037062 CACCAATGCAAATATTCACTCGAGTA 59.963 38.462 19.57 3.69 0.00 2.59
1828 1840 3.577805 ATTTTCGGGGTAAGATCCTGG 57.422 47.619 0.00 0.00 0.00 4.45
1942 1954 2.887151 ATAGCAAAGCAGACAGGGTT 57.113 45.000 0.00 0.00 0.00 4.11
1944 1956 3.813443 ACATATAGCAAAGCAGACAGGG 58.187 45.455 0.00 0.00 0.00 4.45
2009 2050 8.606830 AGGATCAGACAAACTAGGATTTTAGTT 58.393 33.333 0.00 0.00 43.77 2.24
2018 2059 6.234177 AGTTCAAAGGATCAGACAAACTAGG 58.766 40.000 0.00 0.00 0.00 3.02
2123 2373 9.799106 CAAAAACAACAGAGGGGATATCTATAT 57.201 33.333 2.05 0.00 0.00 0.86
2144 2490 7.136119 CAGGTAAAAACTACAGCGATCAAAAA 58.864 34.615 0.00 0.00 0.00 1.94
2150 2496 3.670625 TGCAGGTAAAAACTACAGCGAT 58.329 40.909 0.00 0.00 0.00 4.58
2153 2499 3.437049 CCTCTGCAGGTAAAAACTACAGC 59.563 47.826 15.13 0.00 34.60 4.40
2180 2526 3.670895 CGTATGGCGTATTCAGGAGCTAG 60.671 52.174 0.00 0.00 35.54 3.42
2182 2528 1.000163 CGTATGGCGTATTCAGGAGCT 60.000 52.381 0.00 0.00 35.54 4.09
2200 2546 2.571216 CCGGGTCACTTGTCCTCGT 61.571 63.158 0.00 0.00 0.00 4.18
2230 2576 1.687494 GCAGAACGCCGAAGCTGTAG 61.687 60.000 0.00 0.00 36.60 2.74
2284 2630 5.475719 TGATCTTCGTAGGGTAGTTTTGTG 58.524 41.667 0.00 0.00 0.00 3.33
2335 2681 3.125316 CGATGAACAAGTTAGAACAGGGC 59.875 47.826 0.00 0.00 0.00 5.19
2347 2693 2.386661 ACAGGCCTACGATGAACAAG 57.613 50.000 3.98 0.00 0.00 3.16
2411 2757 4.042809 TGCAGAGGAAGAAAGGATTGGTAA 59.957 41.667 0.00 0.00 0.00 2.85
2412 2758 3.587061 TGCAGAGGAAGAAAGGATTGGTA 59.413 43.478 0.00 0.00 0.00 3.25
2413 2759 2.376518 TGCAGAGGAAGAAAGGATTGGT 59.623 45.455 0.00 0.00 0.00 3.67
2414 2760 3.015327 CTGCAGAGGAAGAAAGGATTGG 58.985 50.000 8.42 0.00 0.00 3.16
2415 2761 3.688673 GTCTGCAGAGGAAGAAAGGATTG 59.311 47.826 18.89 0.00 27.67 2.67
2416 2762 3.618507 CGTCTGCAGAGGAAGAAAGGATT 60.619 47.826 28.24 0.00 27.67 3.01
2417 2763 2.093764 CGTCTGCAGAGGAAGAAAGGAT 60.094 50.000 28.24 0.00 27.67 3.24
2584 2930 2.184020 CTTCAGCATCCGGGTCACCA 62.184 60.000 0.00 0.00 36.13 4.17
2814 3160 1.227147 TCTATTTTCCTCCCGCGCG 60.227 57.895 25.67 25.67 0.00 6.86
2815 3161 0.461339 TGTCTATTTTCCTCCCGCGC 60.461 55.000 0.00 0.00 0.00 6.86
2816 3162 1.287425 GTGTCTATTTTCCTCCCGCG 58.713 55.000 0.00 0.00 0.00 6.46
2817 3163 1.134907 TCGTGTCTATTTTCCTCCCGC 60.135 52.381 0.00 0.00 0.00 6.13
2820 3166 5.103687 GTCTCTTCGTGTCTATTTTCCTCC 58.896 45.833 0.00 0.00 0.00 4.30
2821 3167 5.802956 CAGTCTCTTCGTGTCTATTTTCCTC 59.197 44.000 0.00 0.00 0.00 3.71
2822 3168 5.715070 CAGTCTCTTCGTGTCTATTTTCCT 58.285 41.667 0.00 0.00 0.00 3.36
2823 3169 4.327627 GCAGTCTCTTCGTGTCTATTTTCC 59.672 45.833 0.00 0.00 0.00 3.13
2826 3172 4.218635 TCTGCAGTCTCTTCGTGTCTATTT 59.781 41.667 14.67 0.00 0.00 1.40
2827 3173 3.759086 TCTGCAGTCTCTTCGTGTCTATT 59.241 43.478 14.67 0.00 0.00 1.73
2851 3202 3.703420 CGCTACGGCTATCTACAGTTTT 58.297 45.455 0.00 0.00 36.09 2.43
2890 3241 6.183360 ACAGACCATACAAACCACAAGAAAAG 60.183 38.462 0.00 0.00 0.00 2.27
2901 3252 6.403878 ACTATACCACACAGACCATACAAAC 58.596 40.000 0.00 0.00 0.00 2.93
2902 3253 6.614694 ACTATACCACACAGACCATACAAA 57.385 37.500 0.00 0.00 0.00 2.83
2926 3277 7.885399 AGTAAAGTGAATGAAAGTATGAAGGCT 59.115 33.333 0.00 0.00 0.00 4.58
2961 3318 3.884774 AAGTGAAGTGCCCCGCCA 61.885 61.111 0.00 0.00 0.00 5.69
3065 3529 0.242017 GGCTGTGTGATGACCTTTGC 59.758 55.000 0.00 0.00 0.00 3.68
3088 3552 6.366340 TCCCGATGCTTAATGGGTTTAATTA 58.634 36.000 0.00 0.00 42.54 1.40
3089 3553 5.205056 TCCCGATGCTTAATGGGTTTAATT 58.795 37.500 0.00 0.00 42.54 1.40
3090 3554 4.798882 TCCCGATGCTTAATGGGTTTAAT 58.201 39.130 0.00 0.00 42.54 1.40
3091 3555 4.080243 TCTCCCGATGCTTAATGGGTTTAA 60.080 41.667 0.00 0.00 42.54 1.52
3092 3556 3.456644 TCTCCCGATGCTTAATGGGTTTA 59.543 43.478 0.00 0.00 42.54 2.01
3093 3557 2.241176 TCTCCCGATGCTTAATGGGTTT 59.759 45.455 0.00 0.00 42.54 3.27
3094 3558 1.843851 TCTCCCGATGCTTAATGGGTT 59.156 47.619 0.00 0.00 42.54 4.11
3095 3559 1.507140 TCTCCCGATGCTTAATGGGT 58.493 50.000 0.00 0.00 42.54 4.51
3096 3560 2.816087 CAATCTCCCGATGCTTAATGGG 59.184 50.000 0.00 0.00 43.36 4.00
3097 3561 2.816087 CCAATCTCCCGATGCTTAATGG 59.184 50.000 0.00 0.00 0.00 3.16
3098 3562 2.227388 GCCAATCTCCCGATGCTTAATG 59.773 50.000 0.00 0.00 0.00 1.90
3099 3563 2.508526 GCCAATCTCCCGATGCTTAAT 58.491 47.619 0.00 0.00 0.00 1.40
3100 3564 1.810031 CGCCAATCTCCCGATGCTTAA 60.810 52.381 0.00 0.00 0.00 1.85
3101 3565 0.249868 CGCCAATCTCCCGATGCTTA 60.250 55.000 0.00 0.00 0.00 3.09
3102 3566 1.524621 CGCCAATCTCCCGATGCTT 60.525 57.895 0.00 0.00 0.00 3.91
3103 3567 2.109799 CGCCAATCTCCCGATGCT 59.890 61.111 0.00 0.00 0.00 3.79
3104 3568 2.974698 CCGCCAATCTCCCGATGC 60.975 66.667 0.00 0.00 0.00 3.91
3105 3569 2.974698 GCCGCCAATCTCCCGATG 60.975 66.667 0.00 0.00 0.00 3.84
3106 3570 4.256180 GGCCGCCAATCTCCCGAT 62.256 66.667 3.91 0.00 0.00 4.18
3108 3572 4.794648 TTGGCCGCCAATCTCCCG 62.795 66.667 21.31 0.00 38.75 5.14
3109 3573 3.140814 GTTGGCCGCCAATCTCCC 61.141 66.667 27.27 10.82 45.80 4.30
3110 3574 3.140814 GGTTGGCCGCCAATCTCC 61.141 66.667 27.27 19.59 45.80 3.71
3111 3575 2.361104 TGGTTGGCCGCCAATCTC 60.361 61.111 30.86 21.26 45.80 2.75
3112 3576 2.361610 CTGGTTGGCCGCCAATCT 60.362 61.111 30.86 0.00 45.80 2.40
3113 3577 4.133796 GCTGGTTGGCCGCCAATC 62.134 66.667 27.27 26.63 45.80 2.67
3114 3578 2.572333 ATAGCTGGTTGGCCGCCAAT 62.572 55.000 27.27 13.74 45.80 3.16
3115 3579 3.280938 ATAGCTGGTTGGCCGCCAA 62.281 57.895 21.31 21.31 41.69 4.52
3116 3580 3.727258 ATAGCTGGTTGGCCGCCA 61.727 61.111 8.43 8.43 37.67 5.69
3117 3581 3.211963 CATAGCTGGTTGGCCGCC 61.212 66.667 1.04 1.04 37.67 6.13
3118 3582 3.892581 GCATAGCTGGTTGGCCGC 61.893 66.667 0.00 0.00 37.67 6.53
3119 3583 3.211963 GGCATAGCTGGTTGGCCG 61.212 66.667 0.00 0.00 37.67 6.13
3120 3584 2.044053 TGGCATAGCTGGTTGGCC 60.044 61.111 14.30 12.70 44.82 5.36
3121 3585 1.039233 ATGTGGCATAGCTGGTTGGC 61.039 55.000 0.00 4.54 38.77 4.52
3122 3586 0.742505 CATGTGGCATAGCTGGTTGG 59.257 55.000 0.00 0.00 0.00 3.77
3123 3587 0.742505 CCATGTGGCATAGCTGGTTG 59.257 55.000 0.00 0.00 0.00 3.77
3124 3588 3.196040 CCATGTGGCATAGCTGGTT 57.804 52.632 0.00 0.00 0.00 3.67
3125 3589 4.993307 CCATGTGGCATAGCTGGT 57.007 55.556 0.00 0.00 0.00 4.00
3135 3599 4.124351 CCAGCTTGCGCCATGTGG 62.124 66.667 4.18 2.86 36.60 4.17
3136 3600 2.922950 AACCAGCTTGCGCCATGTG 61.923 57.895 4.18 0.00 36.60 3.21
3137 3601 2.598394 AACCAGCTTGCGCCATGT 60.598 55.556 4.18 0.00 36.60 3.21
3138 3602 2.126228 CAACCAGCTTGCGCCATG 60.126 61.111 4.18 0.00 36.60 3.66
3139 3603 3.376078 CCAACCAGCTTGCGCCAT 61.376 61.111 4.18 0.00 36.60 4.40
3144 3608 4.347453 CACGGCCAACCAGCTTGC 62.347 66.667 2.24 0.00 34.57 4.01
3145 3609 3.673484 CCACGGCCAACCAGCTTG 61.673 66.667 2.24 0.00 34.57 4.01
3146 3610 4.204028 ACCACGGCCAACCAGCTT 62.204 61.111 2.24 0.00 34.57 3.74
3147 3611 4.954970 CACCACGGCCAACCAGCT 62.955 66.667 2.24 0.00 34.57 4.24
3148 3612 4.947147 TCACCACGGCCAACCAGC 62.947 66.667 2.24 0.00 34.57 4.85
3149 3613 2.669569 CTCACCACGGCCAACCAG 60.670 66.667 2.24 0.00 34.57 4.00
3150 3614 2.272230 TTTCTCACCACGGCCAACCA 62.272 55.000 2.24 0.00 34.57 3.67
3151 3615 1.515521 CTTTCTCACCACGGCCAACC 61.516 60.000 2.24 0.00 0.00 3.77
3152 3616 1.949257 CTTTCTCACCACGGCCAAC 59.051 57.895 2.24 0.00 0.00 3.77
3153 3617 1.896660 GCTTTCTCACCACGGCCAA 60.897 57.895 2.24 0.00 0.00 4.52
3154 3618 2.281484 GCTTTCTCACCACGGCCA 60.281 61.111 2.24 0.00 0.00 5.36
3155 3619 1.172812 AAAGCTTTCTCACCACGGCC 61.173 55.000 5.69 0.00 0.00 6.13
3156 3620 0.668535 AAAAGCTTTCTCACCACGGC 59.331 50.000 13.10 0.00 0.00 5.68
3157 3621 1.001378 CCAAAAGCTTTCTCACCACGG 60.001 52.381 13.10 0.00 0.00 4.94
3158 3622 1.946768 TCCAAAAGCTTTCTCACCACG 59.053 47.619 13.10 0.00 0.00 4.94
3159 3623 4.385358 TTTCCAAAAGCTTTCTCACCAC 57.615 40.909 13.10 0.00 0.00 4.16
3160 3624 5.413309 TTTTTCCAAAAGCTTTCTCACCA 57.587 34.783 13.10 0.00 0.00 4.17
3161 3625 6.283694 AGATTTTTCCAAAAGCTTTCTCACC 58.716 36.000 13.10 0.00 0.00 4.02
3162 3626 7.776933 AAGATTTTTCCAAAAGCTTTCTCAC 57.223 32.000 13.10 0.00 0.00 3.51
3163 3627 9.533253 CTAAAGATTTTTCCAAAAGCTTTCTCA 57.467 29.630 22.00 9.64 36.56 3.27
3164 3628 9.750125 TCTAAAGATTTTTCCAAAAGCTTTCTC 57.250 29.630 22.00 0.43 36.56 2.87
3167 3631 9.276590 CCATCTAAAGATTTTTCCAAAAGCTTT 57.723 29.630 22.01 22.01 37.69 3.51
3168 3632 8.650490 TCCATCTAAAGATTTTTCCAAAAGCTT 58.350 29.630 6.64 6.64 31.21 3.74
3169 3633 8.193953 TCCATCTAAAGATTTTTCCAAAAGCT 57.806 30.769 0.00 0.00 31.21 3.74
3170 3634 7.547019 CCTCCATCTAAAGATTTTTCCAAAAGC 59.453 37.037 0.00 0.00 31.21 3.51
3171 3635 8.588472 ACCTCCATCTAAAGATTTTTCCAAAAG 58.412 33.333 0.00 0.00 31.21 2.27
3172 3636 8.367156 CACCTCCATCTAAAGATTTTTCCAAAA 58.633 33.333 0.00 0.00 31.21 2.44
3173 3637 7.508977 ACACCTCCATCTAAAGATTTTTCCAAA 59.491 33.333 0.00 0.00 31.21 3.28
3174 3638 7.010160 ACACCTCCATCTAAAGATTTTTCCAA 58.990 34.615 0.00 0.00 31.21 3.53
3175 3639 6.434028 CACACCTCCATCTAAAGATTTTTCCA 59.566 38.462 0.00 0.00 31.21 3.53
3176 3640 6.127619 CCACACCTCCATCTAAAGATTTTTCC 60.128 42.308 0.00 0.00 31.21 3.13
3177 3641 6.659242 TCCACACCTCCATCTAAAGATTTTTC 59.341 38.462 0.00 0.00 31.21 2.29
3178 3642 6.552008 TCCACACCTCCATCTAAAGATTTTT 58.448 36.000 0.00 0.00 31.21 1.94
3179 3643 6.139679 TCCACACCTCCATCTAAAGATTTT 57.860 37.500 0.00 0.00 31.21 1.82
3180 3644 5.779241 TCCACACCTCCATCTAAAGATTT 57.221 39.130 0.00 0.00 31.21 2.17
3181 3645 5.983333 ATCCACACCTCCATCTAAAGATT 57.017 39.130 0.00 0.00 31.21 2.40
3182 3646 5.983333 AATCCACACCTCCATCTAAAGAT 57.017 39.130 0.00 0.00 34.56 2.40
3183 3647 6.884472 TTAATCCACACCTCCATCTAAAGA 57.116 37.500 0.00 0.00 0.00 2.52
3184 3648 6.318900 GGTTTAATCCACACCTCCATCTAAAG 59.681 42.308 0.00 0.00 0.00 1.85
3185 3649 6.184789 GGTTTAATCCACACCTCCATCTAAA 58.815 40.000 0.00 0.00 0.00 1.85
3186 3650 5.339695 GGGTTTAATCCACACCTCCATCTAA 60.340 44.000 4.97 0.00 0.00 2.10
3187 3651 4.165372 GGGTTTAATCCACACCTCCATCTA 59.835 45.833 4.97 0.00 0.00 1.98
3188 3652 3.053619 GGGTTTAATCCACACCTCCATCT 60.054 47.826 4.97 0.00 0.00 2.90
3189 3653 3.288092 GGGTTTAATCCACACCTCCATC 58.712 50.000 4.97 0.00 0.00 3.51
3190 3654 2.652348 TGGGTTTAATCCACACCTCCAT 59.348 45.455 0.00 0.00 0.00 3.41
3191 3655 2.066592 TGGGTTTAATCCACACCTCCA 58.933 47.619 0.00 0.00 0.00 3.86
3192 3656 2.891191 TGGGTTTAATCCACACCTCC 57.109 50.000 0.00 0.00 0.00 4.30
3193 3657 5.163550 GCTTAATGGGTTTAATCCACACCTC 60.164 44.000 0.00 0.00 37.08 3.85
3194 3658 4.709886 GCTTAATGGGTTTAATCCACACCT 59.290 41.667 0.00 0.00 37.08 4.00
3195 3659 4.464597 TGCTTAATGGGTTTAATCCACACC 59.535 41.667 0.00 0.00 37.08 4.16
3196 3660 5.652994 TGCTTAATGGGTTTAATCCACAC 57.347 39.130 0.00 0.00 37.08 3.82
3197 3661 5.954752 TGATGCTTAATGGGTTTAATCCACA 59.045 36.000 0.00 0.00 37.08 4.17
3198 3662 6.461509 CCTGATGCTTAATGGGTTTAATCCAC 60.462 42.308 0.00 0.00 37.08 4.02
3199 3663 5.598005 CCTGATGCTTAATGGGTTTAATCCA 59.402 40.000 0.00 0.00 38.82 3.41
3200 3664 5.833131 TCCTGATGCTTAATGGGTTTAATCC 59.167 40.000 0.00 0.00 0.00 3.01
3201 3665 6.772716 TCTCCTGATGCTTAATGGGTTTAATC 59.227 38.462 0.00 0.00 0.00 1.75
3202 3666 6.672593 TCTCCTGATGCTTAATGGGTTTAAT 58.327 36.000 0.00 0.00 0.00 1.40
3203 3667 6.073447 TCTCCTGATGCTTAATGGGTTTAA 57.927 37.500 0.00 0.00 0.00 1.52
3204 3668 5.708736 TCTCCTGATGCTTAATGGGTTTA 57.291 39.130 0.00 0.00 0.00 2.01
3205 3669 4.591321 TCTCCTGATGCTTAATGGGTTT 57.409 40.909 0.00 0.00 0.00 3.27
3206 3670 4.803329 ATCTCCTGATGCTTAATGGGTT 57.197 40.909 0.00 0.00 0.00 4.11
3207 3671 4.467769 CAATCTCCTGATGCTTAATGGGT 58.532 43.478 0.00 0.00 32.44 4.51
3208 3672 3.825014 CCAATCTCCTGATGCTTAATGGG 59.175 47.826 0.00 0.00 32.44 4.00
3209 3673 4.277672 CACCAATCTCCTGATGCTTAATGG 59.722 45.833 0.00 0.00 32.31 3.16
3210 3674 4.277672 CCACCAATCTCCTGATGCTTAATG 59.722 45.833 0.00 0.00 32.44 1.90
3211 3675 4.467769 CCACCAATCTCCTGATGCTTAAT 58.532 43.478 0.00 0.00 32.44 1.40
3212 3676 3.889815 CCACCAATCTCCTGATGCTTAA 58.110 45.455 0.00 0.00 32.44 1.85
3213 3677 2.421952 GCCACCAATCTCCTGATGCTTA 60.422 50.000 0.00 0.00 32.44 3.09
3214 3678 1.684248 GCCACCAATCTCCTGATGCTT 60.684 52.381 0.00 0.00 32.44 3.91
3215 3679 0.106819 GCCACCAATCTCCTGATGCT 60.107 55.000 0.00 0.00 32.44 3.79
3216 3680 1.105759 GGCCACCAATCTCCTGATGC 61.106 60.000 0.00 0.00 32.44 3.91
3217 3681 0.256752 TGGCCACCAATCTCCTGATG 59.743 55.000 0.00 0.00 32.44 3.07
3218 3682 1.002069 TTGGCCACCAATCTCCTGAT 58.998 50.000 3.88 0.00 38.75 2.90
3219 3683 0.038166 GTTGGCCACCAATCTCCTGA 59.962 55.000 3.88 0.00 45.80 3.86
3220 3684 0.038744 AGTTGGCCACCAATCTCCTG 59.961 55.000 3.88 0.00 45.80 3.86
3221 3685 1.561542 CTAGTTGGCCACCAATCTCCT 59.438 52.381 3.88 0.00 45.80 3.69
3222 3686 2.019156 GCTAGTTGGCCACCAATCTCC 61.019 57.143 3.88 0.00 45.80 3.71
3223 3687 1.065126 AGCTAGTTGGCCACCAATCTC 60.065 52.381 3.88 0.00 45.80 2.75
3224 3688 0.995024 AGCTAGTTGGCCACCAATCT 59.005 50.000 3.88 1.66 45.80 2.40
3225 3689 2.710096 TAGCTAGTTGGCCACCAATC 57.290 50.000 3.88 0.00 45.80 2.67
3226 3690 2.936202 CATAGCTAGTTGGCCACCAAT 58.064 47.619 3.88 0.00 45.80 3.16
3227 3691 1.681780 GCATAGCTAGTTGGCCACCAA 60.682 52.381 3.88 0.00 41.69 3.67
3228 3692 0.107214 GCATAGCTAGTTGGCCACCA 60.107 55.000 3.88 0.00 0.00 4.17
3229 3693 0.819666 GGCATAGCTAGTTGGCCACC 60.820 60.000 3.88 0.00 44.01 4.61
3230 3694 2.707902 GGCATAGCTAGTTGGCCAC 58.292 57.895 3.88 0.00 44.01 5.01
3232 3696 1.160329 CGTGGCATAGCTAGTTGGCC 61.160 60.000 15.91 16.53 44.82 5.36
3233 3697 0.462047 ACGTGGCATAGCTAGTTGGC 60.462 55.000 12.68 12.68 38.77 4.52
3234 3698 1.290203 CACGTGGCATAGCTAGTTGG 58.710 55.000 7.95 0.00 0.00 3.77
3235 3699 1.290203 CCACGTGGCATAGCTAGTTG 58.710 55.000 24.02 0.00 0.00 3.16
3236 3700 3.760693 CCACGTGGCATAGCTAGTT 57.239 52.632 24.02 0.00 0.00 2.24
3250 3714 4.688419 CAACCAGCTTGCGCCACG 62.688 66.667 4.18 0.00 36.60 4.94
3251 3715 4.347453 CCAACCAGCTTGCGCCAC 62.347 66.667 4.18 0.00 36.60 5.01
3263 3727 0.890683 CTTTCTCACCATGGCCAACC 59.109 55.000 10.96 0.00 0.00 3.77
3264 3728 0.244721 GCTTTCTCACCATGGCCAAC 59.755 55.000 10.96 0.00 0.00 3.77
3265 3729 0.112995 AGCTTTCTCACCATGGCCAA 59.887 50.000 10.96 0.00 0.00 4.52
3266 3730 0.112995 AAGCTTTCTCACCATGGCCA 59.887 50.000 13.04 8.56 0.00 5.36
3267 3731 1.260544 AAAGCTTTCTCACCATGGCC 58.739 50.000 13.04 0.00 0.00 5.36
3268 3732 2.611224 CCAAAAGCTTTCTCACCATGGC 60.611 50.000 13.10 0.00 0.00 4.40
3269 3733 2.892852 TCCAAAAGCTTTCTCACCATGG 59.107 45.455 13.10 11.19 0.00 3.66
3270 3734 4.589216 TTCCAAAAGCTTTCTCACCATG 57.411 40.909 13.10 4.99 0.00 3.66
3271 3735 6.916360 TTATTCCAAAAGCTTTCTCACCAT 57.084 33.333 13.10 3.34 0.00 3.55
3272 3736 6.916360 ATTATTCCAAAAGCTTTCTCACCA 57.084 33.333 13.10 0.00 0.00 4.17
3273 3737 8.090831 AGAAATTATTCCAAAAGCTTTCTCACC 58.909 33.333 13.10 0.00 36.12 4.02
3280 3744 9.479549 TCCATCTAGAAATTATTCCAAAAGCTT 57.520 29.630 0.00 0.00 36.12 3.74
3281 3745 9.129532 CTCCATCTAGAAATTATTCCAAAAGCT 57.870 33.333 0.00 0.00 36.12 3.74
3282 3746 8.355913 CCTCCATCTAGAAATTATTCCAAAAGC 58.644 37.037 0.00 0.00 36.12 3.51
3283 3747 9.413734 ACCTCCATCTAGAAATTATTCCAAAAG 57.586 33.333 0.00 0.00 36.12 2.27
3284 3748 9.189156 CACCTCCATCTAGAAATTATTCCAAAA 57.811 33.333 0.00 0.00 36.12 2.44
3285 3749 8.336235 ACACCTCCATCTAGAAATTATTCCAAA 58.664 33.333 0.00 0.00 36.12 3.28
3286 3750 7.775093 CACACCTCCATCTAGAAATTATTCCAA 59.225 37.037 0.00 0.00 36.12 3.53
3287 3751 7.127186 TCACACCTCCATCTAGAAATTATTCCA 59.873 37.037 0.00 0.00 36.12 3.53
3288 3752 7.509546 TCACACCTCCATCTAGAAATTATTCC 58.490 38.462 0.00 0.00 36.12 3.01
3289 3753 8.964476 TTCACACCTCCATCTAGAAATTATTC 57.036 34.615 0.00 0.00 35.70 1.75
3290 3754 9.927081 AATTCACACCTCCATCTAGAAATTATT 57.073 29.630 0.00 0.00 0.00 1.40
3291 3755 9.927081 AAATTCACACCTCCATCTAGAAATTAT 57.073 29.630 0.00 0.00 0.00 1.28
3292 3756 9.753674 AAAATTCACACCTCCATCTAGAAATTA 57.246 29.630 0.00 0.00 0.00 1.40
3293 3757 8.655935 AAAATTCACACCTCCATCTAGAAATT 57.344 30.769 0.00 0.00 0.00 1.82
3294 3758 8.655935 AAAAATTCACACCTCCATCTAGAAAT 57.344 30.769 0.00 0.00 0.00 2.17
3328 3792 3.414269 GGTTCGGACCACCATCTAAAAA 58.586 45.455 8.43 0.00 45.77 1.94
3329 3793 3.062122 GGTTCGGACCACCATCTAAAA 57.938 47.619 8.43 0.00 45.77 1.52
3330 3794 2.773993 GGTTCGGACCACCATCTAAA 57.226 50.000 8.43 0.00 45.77 1.85
3340 3804 2.430248 AAATACATGGGGTTCGGACC 57.570 50.000 3.45 3.45 45.75 4.46
3368 3832 1.385528 CGCCACTTTACATAACCCCC 58.614 55.000 0.00 0.00 0.00 5.40
3369 3833 0.736636 GCGCCACTTTACATAACCCC 59.263 55.000 0.00 0.00 0.00 4.95
3370 3834 1.669265 GAGCGCCACTTTACATAACCC 59.331 52.381 2.29 0.00 0.00 4.11
3371 3835 1.326548 CGAGCGCCACTTTACATAACC 59.673 52.381 2.29 0.00 0.00 2.85
3372 3836 1.997606 ACGAGCGCCACTTTACATAAC 59.002 47.619 2.29 0.00 0.00 1.89
3373 3837 2.264813 GACGAGCGCCACTTTACATAA 58.735 47.619 2.29 0.00 0.00 1.90
3374 3838 1.202817 TGACGAGCGCCACTTTACATA 59.797 47.619 2.29 0.00 0.00 2.29
3375 3839 0.037697 TGACGAGCGCCACTTTACAT 60.038 50.000 2.29 0.00 0.00 2.29
3376 3840 0.666274 CTGACGAGCGCCACTTTACA 60.666 55.000 2.29 0.00 0.00 2.41
3377 3841 0.666577 ACTGACGAGCGCCACTTTAC 60.667 55.000 2.29 0.00 0.00 2.01
3378 3842 0.883153 TACTGACGAGCGCCACTTTA 59.117 50.000 2.29 0.00 0.00 1.85
3379 3843 0.388649 CTACTGACGAGCGCCACTTT 60.389 55.000 2.29 0.00 0.00 2.66
3380 3844 1.213013 CTACTGACGAGCGCCACTT 59.787 57.895 2.29 0.00 0.00 3.16
3381 3845 2.701780 CCTACTGACGAGCGCCACT 61.702 63.158 2.29 0.00 0.00 4.00
3382 3846 2.202623 CCTACTGACGAGCGCCAC 60.203 66.667 2.29 0.00 0.00 5.01
3383 3847 4.129737 GCCTACTGACGAGCGCCA 62.130 66.667 2.29 0.00 0.00 5.69
3384 3848 2.478890 TAGCCTACTGACGAGCGCC 61.479 63.158 2.29 0.00 0.00 6.53
3385 3849 1.298488 GTAGCCTACTGACGAGCGC 60.298 63.158 0.00 0.00 0.00 5.92
3386 3850 1.011019 CGTAGCCTACTGACGAGCG 60.011 63.158 0.00 0.00 38.88 5.03
3387 3851 1.355916 CCGTAGCCTACTGACGAGC 59.644 63.158 0.00 0.00 38.88 5.03
3388 3852 0.377554 CACCGTAGCCTACTGACGAG 59.622 60.000 0.00 0.00 38.88 4.18
3389 3853 1.651240 GCACCGTAGCCTACTGACGA 61.651 60.000 0.00 0.00 38.88 4.20
3390 3854 1.226603 GCACCGTAGCCTACTGACG 60.227 63.158 0.00 0.00 36.36 4.35
3391 3855 1.386533 TAGCACCGTAGCCTACTGAC 58.613 55.000 0.00 0.00 34.23 3.51
3392 3856 2.133281 TTAGCACCGTAGCCTACTGA 57.867 50.000 0.00 0.00 34.23 3.41
3393 3857 3.454371 AATTAGCACCGTAGCCTACTG 57.546 47.619 0.00 0.00 34.23 2.74
3394 3858 4.482952 AAAATTAGCACCGTAGCCTACT 57.517 40.909 0.00 0.00 34.23 2.57
3428 3892 8.902806 TCTTGCATCTGAGAAAAGAAGTAAAAA 58.097 29.630 3.91 0.00 0.00 1.94
3429 3893 8.450578 TCTTGCATCTGAGAAAAGAAGTAAAA 57.549 30.769 3.91 0.00 0.00 1.52
3430 3894 8.509690 CATCTTGCATCTGAGAAAAGAAGTAAA 58.490 33.333 8.90 0.00 31.14 2.01
3431 3895 7.120285 CCATCTTGCATCTGAGAAAAGAAGTAA 59.880 37.037 8.90 0.00 31.14 2.24
3432 3896 6.596888 CCATCTTGCATCTGAGAAAAGAAGTA 59.403 38.462 8.90 0.00 31.14 2.24
3433 3897 5.415077 CCATCTTGCATCTGAGAAAAGAAGT 59.585 40.000 8.90 0.00 31.14 3.01
3434 3898 5.646793 TCCATCTTGCATCTGAGAAAAGAAG 59.353 40.000 8.90 5.77 31.14 2.85
3435 3899 5.563592 TCCATCTTGCATCTGAGAAAAGAA 58.436 37.500 8.90 0.00 31.14 2.52
3436 3900 5.169992 TCCATCTTGCATCTGAGAAAAGA 57.830 39.130 7.70 7.70 0.00 2.52
3437 3901 4.335874 CCTCCATCTTGCATCTGAGAAAAG 59.664 45.833 0.00 0.00 0.00 2.27
3438 3902 4.263639 ACCTCCATCTTGCATCTGAGAAAA 60.264 41.667 0.00 0.00 0.00 2.29
3439 3903 3.265221 ACCTCCATCTTGCATCTGAGAAA 59.735 43.478 0.00 0.00 0.00 2.52
3440 3904 2.842496 ACCTCCATCTTGCATCTGAGAA 59.158 45.455 0.00 0.00 0.00 2.87
3441 3905 2.169978 CACCTCCATCTTGCATCTGAGA 59.830 50.000 0.00 0.00 0.00 3.27
3442 3906 2.169978 TCACCTCCATCTTGCATCTGAG 59.830 50.000 0.00 0.00 0.00 3.35
3443 3907 2.169978 CTCACCTCCATCTTGCATCTGA 59.830 50.000 0.00 0.00 0.00 3.27
3444 3908 2.562635 CTCACCTCCATCTTGCATCTG 58.437 52.381 0.00 0.00 0.00 2.90
3445 3909 1.489649 CCTCACCTCCATCTTGCATCT 59.510 52.381 0.00 0.00 0.00 2.90
3446 3910 1.487976 TCCTCACCTCCATCTTGCATC 59.512 52.381 0.00 0.00 0.00 3.91
3447 3911 1.588239 TCCTCACCTCCATCTTGCAT 58.412 50.000 0.00 0.00 0.00 3.96
3448 3912 1.588239 ATCCTCACCTCCATCTTGCA 58.412 50.000 0.00 0.00 0.00 4.08
3449 3913 2.725221 AATCCTCACCTCCATCTTGC 57.275 50.000 0.00 0.00 0.00 4.01
3485 3949 4.142004 GGTCCTCGCCTCTATCTACAAAAA 60.142 45.833 0.00 0.00 0.00 1.94
3486 3950 3.383825 GGTCCTCGCCTCTATCTACAAAA 59.616 47.826 0.00 0.00 0.00 2.44
3487 3951 2.957006 GGTCCTCGCCTCTATCTACAAA 59.043 50.000 0.00 0.00 0.00 2.83
3488 3952 2.175069 AGGTCCTCGCCTCTATCTACAA 59.825 50.000 0.00 0.00 32.39 2.41
3489 3953 1.775459 AGGTCCTCGCCTCTATCTACA 59.225 52.381 0.00 0.00 32.39 2.74
3490 3954 2.572209 AGGTCCTCGCCTCTATCTAC 57.428 55.000 0.00 0.00 32.39 2.59
3498 3962 0.693049 AAAACATGAGGTCCTCGCCT 59.307 50.000 14.34 0.00 42.53 5.52
3499 3963 1.534729 AAAAACATGAGGTCCTCGCC 58.465 50.000 14.34 0.00 32.35 5.54
3516 3980 4.326278 TGTGCGTGCGTTTTCATTTAAAAA 59.674 33.333 0.00 0.00 38.76 1.94
3517 3981 3.857665 TGTGCGTGCGTTTTCATTTAAAA 59.142 34.783 0.00 0.00 34.66 1.52
3518 3982 3.435566 TGTGCGTGCGTTTTCATTTAAA 58.564 36.364 0.00 0.00 0.00 1.52
3519 3983 3.066369 TGTGCGTGCGTTTTCATTTAA 57.934 38.095 0.00 0.00 0.00 1.52
3520 3984 2.757686 TGTGCGTGCGTTTTCATTTA 57.242 40.000 0.00 0.00 0.00 1.40
3521 3985 1.914634 TTGTGCGTGCGTTTTCATTT 58.085 40.000 0.00 0.00 0.00 2.32
3522 3986 2.132740 ATTGTGCGTGCGTTTTCATT 57.867 40.000 0.00 0.00 0.00 2.57
3523 3987 2.132740 AATTGTGCGTGCGTTTTCAT 57.867 40.000 0.00 0.00 0.00 2.57
3524 3988 1.914634 AAATTGTGCGTGCGTTTTCA 58.085 40.000 0.00 0.00 0.00 2.69
3525 3989 2.533942 AGAAAATTGTGCGTGCGTTTTC 59.466 40.909 12.49 12.49 38.44 2.29
3526 3990 2.533942 GAGAAAATTGTGCGTGCGTTTT 59.466 40.909 0.00 0.00 0.00 2.43
3527 3991 2.116366 GAGAAAATTGTGCGTGCGTTT 58.884 42.857 0.00 0.00 0.00 3.60
3528 3992 1.333619 AGAGAAAATTGTGCGTGCGTT 59.666 42.857 0.00 0.00 0.00 4.84
3529 3993 0.944386 AGAGAAAATTGTGCGTGCGT 59.056 45.000 0.00 0.00 0.00 5.24
3530 3994 1.069973 TGAGAGAAAATTGTGCGTGCG 60.070 47.619 0.00 0.00 0.00 5.34
3531 3995 2.686558 TGAGAGAAAATTGTGCGTGC 57.313 45.000 0.00 0.00 0.00 5.34
3532 3996 2.975851 GCTTGAGAGAAAATTGTGCGTG 59.024 45.455 0.00 0.00 0.00 5.34
3533 3997 2.349817 CGCTTGAGAGAAAATTGTGCGT 60.350 45.455 0.00 0.00 36.78 5.24
3534 3998 2.236690 CGCTTGAGAGAAAATTGTGCG 58.763 47.619 0.00 0.00 35.22 5.34
3535 3999 2.589014 CCGCTTGAGAGAAAATTGTGC 58.411 47.619 0.00 0.00 0.00 4.57
3536 4000 2.030893 TGCCGCTTGAGAGAAAATTGTG 60.031 45.455 0.00 0.00 0.00 3.33
3537 4001 2.030805 GTGCCGCTTGAGAGAAAATTGT 60.031 45.455 0.00 0.00 0.00 2.71
3538 4002 2.589014 GTGCCGCTTGAGAGAAAATTG 58.411 47.619 0.00 0.00 0.00 2.32
3539 4003 1.541588 GGTGCCGCTTGAGAGAAAATT 59.458 47.619 0.00 0.00 0.00 1.82
3540 4004 1.168714 GGTGCCGCTTGAGAGAAAAT 58.831 50.000 0.00 0.00 0.00 1.82
3541 4005 0.179032 TGGTGCCGCTTGAGAGAAAA 60.179 50.000 0.00 0.00 0.00 2.29
3542 4006 0.884704 GTGGTGCCGCTTGAGAGAAA 60.885 55.000 0.00 0.00 0.00 2.52
3543 4007 1.301716 GTGGTGCCGCTTGAGAGAA 60.302 57.895 0.00 0.00 0.00 2.87
3544 4008 2.343758 GTGGTGCCGCTTGAGAGA 59.656 61.111 0.00 0.00 0.00 3.10
3545 4009 2.031012 TGTGGTGCCGCTTGAGAG 59.969 61.111 3.31 0.00 0.00 3.20
3546 4010 2.031012 CTGTGGTGCCGCTTGAGA 59.969 61.111 3.31 0.00 0.00 3.27
3547 4011 3.052082 CCTGTGGTGCCGCTTGAG 61.052 66.667 3.31 0.00 0.00 3.02
3548 4012 4.641645 CCCTGTGGTGCCGCTTGA 62.642 66.667 3.31 0.00 0.00 3.02
3549 4013 4.954970 ACCCTGTGGTGCCGCTTG 62.955 66.667 3.31 0.00 45.58 4.01
3566 4030 0.474079 TACTAGTGGTTGGGGTGCCA 60.474 55.000 5.39 0.00 0.00 4.92
3567 4031 0.916809 ATACTAGTGGTTGGGGTGCC 59.083 55.000 5.39 0.00 0.00 5.01
3568 4032 1.280998 ACATACTAGTGGTTGGGGTGC 59.719 52.381 5.39 0.00 0.00 5.01
3569 4033 4.407621 TGATACATACTAGTGGTTGGGGTG 59.592 45.833 5.39 0.00 0.00 4.61
3570 4034 4.627015 TGATACATACTAGTGGTTGGGGT 58.373 43.478 5.39 0.00 0.00 4.95
3571 4035 5.623956 TTGATACATACTAGTGGTTGGGG 57.376 43.478 5.39 0.00 0.00 4.96
3572 4036 6.591935 ACATTGATACATACTAGTGGTTGGG 58.408 40.000 5.39 0.00 0.00 4.12
3573 4037 9.208022 CATACATTGATACATACTAGTGGTTGG 57.792 37.037 5.39 0.00 0.00 3.77
3574 4038 8.712363 GCATACATTGATACATACTAGTGGTTG 58.288 37.037 5.39 3.28 0.00 3.77
3575 4039 8.428852 TGCATACATTGATACATACTAGTGGTT 58.571 33.333 5.39 0.00 0.00 3.67
3576 4040 7.872993 GTGCATACATTGATACATACTAGTGGT 59.127 37.037 5.39 6.45 0.00 4.16
3577 4041 8.090831 AGTGCATACATTGATACATACTAGTGG 58.909 37.037 5.39 0.00 0.00 4.00
3578 4042 9.481340 AAGTGCATACATTGATACATACTAGTG 57.519 33.333 5.39 0.00 0.00 2.74
3579 4043 9.698309 GAAGTGCATACATTGATACATACTAGT 57.302 33.333 0.00 0.00 0.00 2.57
3580 4044 8.854312 CGAAGTGCATACATTGATACATACTAG 58.146 37.037 0.00 0.00 0.00 2.57
3581 4045 8.573035 TCGAAGTGCATACATTGATACATACTA 58.427 33.333 0.00 0.00 0.00 1.82
3582 4046 7.382488 GTCGAAGTGCATACATTGATACATACT 59.618 37.037 0.00 0.00 0.00 2.12
3583 4047 7.382488 AGTCGAAGTGCATACATTGATACATAC 59.618 37.037 0.00 0.00 0.00 2.39
3584 4048 7.433680 AGTCGAAGTGCATACATTGATACATA 58.566 34.615 0.00 0.00 0.00 2.29
3635 4099 4.879545 ACTTTGAAAACGAGCTCCTTGTAA 59.120 37.500 8.47 0.00 0.00 2.41
3649 4113 6.417635 CGCTCTAGAAAATTGCACTTTGAAAA 59.582 34.615 2.45 0.00 0.00 2.29
3657 4121 4.404507 TTCACGCTCTAGAAAATTGCAC 57.595 40.909 0.00 0.00 0.00 4.57
3762 4226 7.858052 ATATTTGTCTTCTTCTTTTTGCACG 57.142 32.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.