Multiple sequence alignment - TraesCS7D01G450800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G450800 chr7D 100.000 4474 0 0 1 4474 570650993 570646520 0.000000e+00 8263.0
1 TraesCS7D01G450800 chr7D 78.832 137 13 10 3826 3947 466848006 466847871 1.330000e-10 78.7
2 TraesCS7D01G450800 chr7B 88.731 2254 183 37 1550 3756 626113759 626111530 0.000000e+00 2689.0
3 TraesCS7D01G450800 chr7B 85.595 1312 84 29 329 1549 626115131 626113834 0.000000e+00 1279.0
4 TraesCS7D01G450800 chr7B 83.333 294 44 3 1 294 626115519 626115231 2.650000e-67 267.0
5 TraesCS7D01G450800 chr7B 92.453 53 3 1 3895 3947 13807188 13807137 1.730000e-09 75.0
6 TraesCS7D01G450800 chr7A 88.114 2280 185 38 1550 3773 659406926 659404677 0.000000e+00 2630.0
7 TraesCS7D01G450800 chr7A 89.371 875 34 28 327 1145 659408235 659407364 0.000000e+00 1046.0
8 TraesCS7D01G450800 chr7A 90.145 345 21 5 1190 1532 659407351 659407018 1.910000e-118 436.0
9 TraesCS7D01G450800 chr7A 78.676 408 81 6 4070 4474 695854468 695854872 2.650000e-67 267.0
10 TraesCS7D01G450800 chr7A 88.360 189 22 0 131 319 659427703 659427515 1.250000e-55 228.0
11 TraesCS7D01G450800 chr7A 76.471 425 72 15 4054 4474 523625099 523625499 5.870000e-49 206.0
12 TraesCS7D01G450800 chr5D 78.783 575 93 15 3894 4463 448578931 448578381 4.260000e-95 359.0
13 TraesCS7D01G450800 chr5D 93.878 49 3 0 3895 3943 486750212 486750260 1.730000e-09 75.0
14 TraesCS7D01G450800 chr2B 83.746 283 43 3 4129 4409 246437375 246437656 9.540000e-67 265.0
15 TraesCS7D01G450800 chr2A 81.410 312 57 1 4163 4474 713177801 713178111 2.070000e-63 254.0
16 TraesCS7D01G450800 chr4B 80.545 257 42 3 4218 4474 141568153 141568401 1.640000e-44 191.0
17 TraesCS7D01G450800 chr4B 94.118 51 1 2 3894 3944 437851837 437851885 4.800000e-10 76.8
18 TraesCS7D01G450800 chr1D 82.178 202 36 0 4133 4334 342871756 342871555 1.650000e-39 174.0
19 TraesCS7D01G450800 chr5B 94.118 51 3 0 3894 3944 243413284 243413334 1.330000e-10 78.7
20 TraesCS7D01G450800 chr5B 94.118 51 2 1 3894 3944 525444107 525444156 4.800000e-10 76.8
21 TraesCS7D01G450800 chr6A 94.118 51 2 1 3894 3944 5652385 5652434 4.800000e-10 76.8
22 TraesCS7D01G450800 chr4A 90.741 54 5 0 3894 3947 34790391 34790338 6.210000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G450800 chr7D 570646520 570650993 4473 True 8263.000000 8263 100.000000 1 4474 1 chr7D.!!$R2 4473
1 TraesCS7D01G450800 chr7B 626111530 626115519 3989 True 1411.666667 2689 85.886333 1 3756 3 chr7B.!!$R2 3755
2 TraesCS7D01G450800 chr7A 659404677 659408235 3558 True 1370.666667 2630 89.210000 327 3773 3 chr7A.!!$R2 3446
3 TraesCS7D01G450800 chr5D 448578381 448578931 550 True 359.000000 359 78.783000 3894 4463 1 chr5D.!!$R1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.033208 TTGATTGATCTGGGTGCCCC 60.033 55.0 4.59 3.42 45.71 5.80 F
466 537 0.033366 AATTGGCACTTTGAACCGCC 59.967 50.0 0.00 0.00 45.11 6.13 F
855 1007 0.037512 CAGGCTGACAGAGTGAGTGG 60.038 60.0 9.42 0.00 0.00 4.00 F
1472 1654 0.250901 GAGTGAGCCCTTCTTGCCAA 60.251 55.0 0.00 0.00 0.00 4.52 F
3028 3316 0.660488 TGCGACGCAAAATGTTCTGT 59.340 45.0 22.24 0.00 34.76 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 1898 0.025898 TTACGACATCGCTCGACTCG 59.974 55.000 15.38 15.38 44.43 4.18 R
1919 2177 1.730501 ACTGCATCTTGACATGTCCG 58.269 50.000 22.85 13.79 0.00 4.79 R
2568 2827 1.303074 ATGCTGATAGCCATGGCCG 60.303 57.895 33.14 16.80 41.51 6.13 R
3203 3491 0.254178 GCCTGCAGAGGAAATGAGGA 59.746 55.000 17.39 0.00 42.93 3.71 R
3832 4149 0.037734 GGGTTTGGATCCAACCGAGT 59.962 55.000 27.04 0.00 35.46 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.368543 GAACGACCCGAAGCCCGT 62.369 66.667 0.00 0.00 36.31 5.28
31 32 3.644399 GACCCGAAGCCCGTGAGAC 62.644 68.421 0.00 0.00 36.31 3.36
40 41 4.436998 CCGTGAGACGTCCCAGGC 62.437 72.222 13.01 0.00 40.58 4.85
59 60 3.090532 GAGGGGGCGGAGGTTGAT 61.091 66.667 0.00 0.00 0.00 2.57
64 65 0.819666 GGGGCGGAGGTTGATTGATC 60.820 60.000 0.00 0.00 0.00 2.92
66 67 1.303309 GGCGGAGGTTGATTGATCTG 58.697 55.000 0.00 0.00 0.00 2.90
67 68 1.303309 GCGGAGGTTGATTGATCTGG 58.697 55.000 0.00 0.00 0.00 3.86
74 75 0.033208 TTGATTGATCTGGGTGCCCC 60.033 55.000 4.59 3.42 45.71 5.80
75 76 0.920763 TGATTGATCTGGGTGCCCCT 60.921 55.000 11.10 0.00 45.70 4.79
77 78 1.072965 GATTGATCTGGGTGCCCCTAG 59.927 57.143 11.10 1.82 45.70 3.02
78 79 0.988145 TTGATCTGGGTGCCCCTAGG 60.988 60.000 0.06 0.06 45.70 3.02
91 92 1.152096 CCTAGGGGACGGGGCTATT 60.152 63.158 0.00 0.00 33.58 1.73
114 115 0.250513 GCCGGAGAAGAACATGAGGT 59.749 55.000 5.05 0.00 0.00 3.85
116 117 1.276421 CCGGAGAAGAACATGAGGTGT 59.724 52.381 0.00 0.00 44.84 4.16
118 119 2.029020 CGGAGAAGAACATGAGGTGTGA 60.029 50.000 0.00 0.00 41.14 3.58
127 128 2.634940 ACATGAGGTGTGAGTGCTTAGT 59.365 45.455 0.00 0.00 40.28 2.24
129 130 1.270305 TGAGGTGTGAGTGCTTAGTGC 60.270 52.381 0.00 0.00 43.25 4.40
154 155 1.012086 CATGAGCAGTGATTCACGGG 58.988 55.000 16.92 11.81 39.64 5.28
185 186 1.644786 GGCGTGGTGAGCATGGTAAC 61.645 60.000 3.58 3.58 36.08 2.50
186 187 1.966493 GCGTGGTGAGCATGGTAACG 61.966 60.000 6.31 10.93 34.76 3.18
194 195 2.895372 CATGGTAACGCCTCGGCC 60.895 66.667 1.72 0.00 42.51 6.13
215 216 0.457851 CGGAAGGTGAGAGTAGGCAG 59.542 60.000 0.00 0.00 0.00 4.85
221 222 2.312140 AGGTGAGAGTAGGCAGTTAGGA 59.688 50.000 0.00 0.00 0.00 2.94
222 223 2.427812 GGTGAGAGTAGGCAGTTAGGAC 59.572 54.545 0.00 0.00 0.00 3.85
225 226 0.102663 GAGTAGGCAGTTAGGACGGC 59.897 60.000 0.00 0.00 44.80 5.68
234 235 1.301874 TTAGGACGGCGTTGGTTGG 60.302 57.895 16.19 0.00 0.00 3.77
243 244 1.001706 GGCGTTGGTTGGAAGAAGAAC 60.002 52.381 0.00 0.00 0.00 3.01
247 248 3.127895 CGTTGGTTGGAAGAAGAACAACA 59.872 43.478 8.73 0.00 44.61 3.33
254 255 2.489722 GGAAGAAGAACAACATGAGGGC 59.510 50.000 0.00 0.00 0.00 5.19
255 256 2.957402 AGAAGAACAACATGAGGGCA 57.043 45.000 0.00 0.00 0.00 5.36
258 259 4.154942 AGAAGAACAACATGAGGGCAATT 58.845 39.130 0.00 0.00 0.00 2.32
289 290 2.880890 GGATGAAGATCCAACAATCCGG 59.119 50.000 0.00 0.00 46.93 5.14
294 295 5.016173 TGAAGATCCAACAATCCGGAAAAT 58.984 37.500 9.01 0.00 34.22 1.82
295 296 5.125417 TGAAGATCCAACAATCCGGAAAATC 59.875 40.000 9.01 4.21 34.22 2.17
299 300 3.057876 TCCAACAATCCGGAAAATCAACG 60.058 43.478 9.01 0.00 0.00 4.10
303 304 3.674906 CCGGAAAATCAACGGGCA 58.325 55.556 0.00 0.00 43.69 5.36
304 305 2.188912 CCGGAAAATCAACGGGCAT 58.811 52.632 0.00 0.00 43.69 4.40
306 307 0.525761 CGGAAAATCAACGGGCATGT 59.474 50.000 0.00 0.00 0.00 3.21
308 309 2.609244 CGGAAAATCAACGGGCATGTTT 60.609 45.455 0.00 0.00 0.00 2.83
309 310 3.398406 GGAAAATCAACGGGCATGTTTT 58.602 40.909 0.00 0.00 0.00 2.43
310 311 4.561105 GGAAAATCAACGGGCATGTTTTA 58.439 39.130 0.00 0.00 0.00 1.52
313 314 6.402011 GGAAAATCAACGGGCATGTTTTATTG 60.402 38.462 0.00 0.00 0.00 1.90
315 316 4.167554 TCAACGGGCATGTTTTATTGTC 57.832 40.909 0.00 0.00 0.00 3.18
317 318 5.004448 TCAACGGGCATGTTTTATTGTCTA 58.996 37.500 0.00 0.00 0.00 2.59
318 319 5.123186 TCAACGGGCATGTTTTATTGTCTAG 59.877 40.000 0.00 0.00 0.00 2.43
320 321 5.736813 ACGGGCATGTTTTATTGTCTAGTA 58.263 37.500 0.00 0.00 0.00 1.82
322 323 5.277345 CGGGCATGTTTTATTGTCTAGTAGC 60.277 44.000 0.00 0.00 0.00 3.58
324 325 6.990349 GGGCATGTTTTATTGTCTAGTAGCTA 59.010 38.462 0.00 0.00 0.00 3.32
325 326 7.497909 GGGCATGTTTTATTGTCTAGTAGCTAA 59.502 37.037 0.00 0.00 0.00 3.09
385 451 9.201989 AGACATGTACCTGTTCATCTCTAAATA 57.798 33.333 5.21 0.00 0.00 1.40
431 497 7.415229 GTCCAAATAATTTGACCTCCGATAAC 58.585 38.462 0.00 0.00 43.26 1.89
438 506 3.536956 TGACCTCCGATAACAATGGTC 57.463 47.619 0.00 0.00 42.87 4.02
466 537 0.033366 AATTGGCACTTTGAACCGCC 59.967 50.000 0.00 0.00 45.11 6.13
855 1007 0.037512 CAGGCTGACAGAGTGAGTGG 60.038 60.000 9.42 0.00 0.00 4.00
886 1038 1.227380 GCCTCGCTTGGATCATCGT 60.227 57.895 0.00 0.00 0.00 3.73
964 1135 1.084370 GCGAACAGTCCGGATTCAGG 61.084 60.000 7.81 0.00 0.00 3.86
979 1150 0.339859 TCAGGGCTCCACTGATACCT 59.660 55.000 0.00 0.00 39.87 3.08
985 1159 3.501349 GGCTCCACTGATACCTGATAGA 58.499 50.000 0.00 0.00 0.00 1.98
987 1161 4.530161 GGCTCCACTGATACCTGATAGAAT 59.470 45.833 0.00 0.00 0.00 2.40
1005 1179 4.827087 CAGCGAGCGAGCATGGGT 62.827 66.667 9.01 0.00 40.15 4.51
1029 1203 0.620556 TTGGATGGAGGAGACTTGGC 59.379 55.000 0.00 0.00 44.43 4.52
1147 1328 8.166726 AGGTTTCTTTCCTCTTATGTTCATCTT 58.833 33.333 0.00 0.00 0.00 2.40
1165 1346 0.533978 TTGCGTTCTTGCCTGCAGTA 60.534 50.000 13.81 0.00 38.75 2.74
1177 1358 1.138859 CCTGCAGTATCCACATCCGAA 59.861 52.381 13.81 0.00 0.00 4.30
1184 1365 4.687948 CAGTATCCACATCCGAATGCTTAG 59.312 45.833 0.00 0.00 36.26 2.18
1385 1567 2.580322 TGTTGGATTCATAGGGCTTGGA 59.420 45.455 0.00 0.00 0.00 3.53
1453 1635 6.104665 ACAGAGTGTCAGTTCATGATATGTG 58.895 40.000 0.00 0.00 40.92 3.21
1454 1636 6.071165 ACAGAGTGTCAGTTCATGATATGTGA 60.071 38.462 0.00 0.00 40.92 3.58
1455 1637 6.476053 CAGAGTGTCAGTTCATGATATGTGAG 59.524 42.308 0.00 0.00 40.92 3.51
1456 1638 6.154192 AGAGTGTCAGTTCATGATATGTGAGT 59.846 38.462 0.00 0.00 40.92 3.41
1457 1639 6.104665 AGTGTCAGTTCATGATATGTGAGTG 58.895 40.000 0.00 0.00 40.92 3.51
1472 1654 0.250901 GAGTGAGCCCTTCTTGCCAA 60.251 55.000 0.00 0.00 0.00 4.52
1479 1661 0.961753 CCCTTCTTGCCAACTTCCAC 59.038 55.000 0.00 0.00 0.00 4.02
1506 1690 3.355378 TGTGGTCCAATGTTCATCCATC 58.645 45.455 0.00 0.00 0.00 3.51
1535 1719 5.997129 CCCTGTTCAAAATTGGTTTGCTTAT 59.003 36.000 0.00 0.00 45.38 1.73
1536 1720 7.015682 TCCCTGTTCAAAATTGGTTTGCTTATA 59.984 33.333 0.00 0.00 45.38 0.98
1537 1721 7.117667 CCCTGTTCAAAATTGGTTTGCTTATAC 59.882 37.037 0.00 0.00 45.38 1.47
1538 1722 7.117667 CCTGTTCAAAATTGGTTTGCTTATACC 59.882 37.037 0.00 0.00 45.38 2.73
1539 1723 7.500992 TGTTCAAAATTGGTTTGCTTATACCA 58.499 30.769 0.00 0.00 45.38 3.25
1571 1829 7.024340 ACACATTGATTCTATCATGTTCAGC 57.976 36.000 0.00 0.00 39.39 4.26
1589 1847 2.029623 AGCAATGAGGATGCCATGAAC 58.970 47.619 0.00 0.00 44.91 3.18
1598 1856 2.096496 GGATGCCATGAACAAGTTCTCG 59.904 50.000 13.49 5.18 40.14 4.04
1640 1898 2.357034 TCGCCGCTTGAAGTGTCC 60.357 61.111 4.92 0.00 0.00 4.02
1910 2168 5.350914 CAGTTGATCCTCAGACATCAAGAAC 59.649 44.000 0.36 0.00 39.22 3.01
1919 2177 7.041030 TCCTCAGACATCAAGAACGATATCTAC 60.041 40.741 0.34 0.00 28.09 2.59
1944 2202 6.088824 GGACATGTCAAGATGCAGTTTAAAG 58.911 40.000 26.47 0.00 0.00 1.85
1949 2207 6.738114 TGTCAAGATGCAGTTTAAAGGAAAG 58.262 36.000 0.00 0.00 0.00 2.62
1958 2216 6.608002 TGCAGTTTAAAGGAAAGGAAAGGTTA 59.392 34.615 0.00 0.00 0.00 2.85
1979 2238 6.883217 GGTTATGATCTGCCATCATACAGAAT 59.117 38.462 12.77 0.00 45.49 2.40
1990 2249 6.514541 GCCATCATACAGAATCACCATTTGAG 60.515 42.308 0.00 0.00 37.77 3.02
1996 2255 9.334947 CATACAGAATCACCATTTGAGATTAGT 57.665 33.333 0.00 0.00 37.77 2.24
2002 2261 8.511604 AATCACCATTTGAGATTAGTAGTTGG 57.488 34.615 0.00 0.00 37.77 3.77
2042 2301 6.207417 CAGTGTACACCTGGAAAAGATGAAAT 59.793 38.462 22.28 0.00 0.00 2.17
2149 2408 3.196685 GTGCCTCTTCTGTATCTTCAGGT 59.803 47.826 0.00 0.00 36.25 4.00
2292 2551 6.263168 CCAGAAAATACAGAGACTTTGTTGGT 59.737 38.462 3.68 0.00 0.00 3.67
2460 2719 2.163613 GGAAATGGCTCGGTAAGTTTGG 59.836 50.000 0.00 0.00 0.00 3.28
2476 2735 4.137543 AGTTTGGTTTACTCCAGCTCTTG 58.862 43.478 0.00 0.00 38.80 3.02
2520 2779 6.628919 TTATTCATGCACAGATGATTCAGG 57.371 37.500 0.00 0.00 32.35 3.86
2557 2816 6.648879 TGTACTTTTAAGGCTGCAAAGATT 57.351 33.333 20.13 6.42 32.73 2.40
2568 2827 6.389906 AGGCTGCAAAGATTTGTAACAATAC 58.610 36.000 0.50 0.00 40.24 1.89
2677 2936 1.521457 CAATTGCTCTAGCGCCCGA 60.521 57.895 2.29 0.00 45.83 5.14
2694 2953 3.162666 CCCGATGCTGGAGTAGGTATTA 58.837 50.000 0.00 0.00 0.00 0.98
2701 2960 5.716979 TGCTGGAGTAGGTATTATCTCCTT 58.283 41.667 10.66 0.00 44.57 3.36
2703 2962 7.479579 TGCTGGAGTAGGTATTATCTCCTTAT 58.520 38.462 10.66 0.00 44.57 1.73
2704 2963 7.616150 TGCTGGAGTAGGTATTATCTCCTTATC 59.384 40.741 10.66 0.00 44.57 1.75
2705 2964 7.616150 GCTGGAGTAGGTATTATCTCCTTATCA 59.384 40.741 10.66 0.00 44.57 2.15
2706 2965 8.880991 TGGAGTAGGTATTATCTCCTTATCAC 57.119 38.462 10.66 0.00 44.57 3.06
2724 2984 8.180267 CCTTATCACTTTATTGTTGCTTGAGAG 58.820 37.037 0.00 0.00 0.00 3.20
2728 2988 4.768968 ACTTTATTGTTGCTTGAGAGGCAT 59.231 37.500 0.00 0.00 39.54 4.40
2731 2991 6.832520 TTATTGTTGCTTGAGAGGCATTAA 57.167 33.333 0.00 0.00 39.54 1.40
2734 2994 7.592885 ATTGTTGCTTGAGAGGCATTAATAT 57.407 32.000 0.00 0.00 39.54 1.28
2737 2997 5.052693 TGCTTGAGAGGCATTAATATGGT 57.947 39.130 0.00 0.00 34.56 3.55
2741 3001 6.936900 GCTTGAGAGGCATTAATATGGTCTTA 59.063 38.462 0.00 0.00 32.15 2.10
2746 3006 6.939163 AGAGGCATTAATATGGTCTTAGCTTG 59.061 38.462 0.00 0.00 32.15 4.01
2754 3014 4.749245 ATGGTCTTAGCTTGTTCAAACG 57.251 40.909 0.00 0.00 0.00 3.60
2758 3018 5.585445 TGGTCTTAGCTTGTTCAAACGTTAA 59.415 36.000 0.00 0.00 0.00 2.01
2762 3022 9.654417 GTCTTAGCTTGTTCAAACGTTAAATTA 57.346 29.630 0.00 0.00 0.00 1.40
2773 3033 7.531716 TCAAACGTTAAATTATGGTGATGGAC 58.468 34.615 0.00 0.00 0.00 4.02
2808 3068 8.033038 TCTATTCAGGTGTAAATGTGTAGTGAC 58.967 37.037 0.00 0.00 0.00 3.67
2809 3069 5.538849 TCAGGTGTAAATGTGTAGTGACA 57.461 39.130 0.00 0.00 0.00 3.58
2810 3070 6.109156 TCAGGTGTAAATGTGTAGTGACAT 57.891 37.500 0.00 0.00 38.04 3.06
2906 3194 3.100207 CTCCTTTTGGGGCTAATTCCA 57.900 47.619 0.00 0.00 40.87 3.53
2912 3200 2.990740 TGGGGCTAATTCCAAACAGT 57.009 45.000 0.00 0.00 0.00 3.55
2948 3236 3.093835 CCTGGGGTAATGGCGGGA 61.094 66.667 0.00 0.00 0.00 5.14
3008 3296 7.893302 ACCTCCAAACTAATGGTATGATTCAAA 59.107 33.333 0.00 0.00 41.46 2.69
3009 3297 8.917088 CCTCCAAACTAATGGTATGATTCAAAT 58.083 33.333 0.00 0.00 41.46 2.32
3010 3298 9.740239 CTCCAAACTAATGGTATGATTCAAATG 57.260 33.333 0.00 0.00 41.46 2.32
3011 3299 8.196771 TCCAAACTAATGGTATGATTCAAATGC 58.803 33.333 0.00 0.00 41.46 3.56
3028 3316 0.660488 TGCGACGCAAAATGTTCTGT 59.340 45.000 22.24 0.00 34.76 3.41
3030 3318 1.708680 GCGACGCAAAATGTTCTGTTC 59.291 47.619 16.42 0.00 0.00 3.18
3034 3322 2.353269 ACGCAAAATGTTCTGTTCGTCA 59.647 40.909 0.00 0.00 0.00 4.35
3040 3328 7.148983 CGCAAAATGTTCTGTTCGTCAAATATT 60.149 33.333 0.00 0.00 0.00 1.28
3041 3329 8.487176 GCAAAATGTTCTGTTCGTCAAATATTT 58.513 29.630 0.00 0.00 0.00 1.40
3074 3362 9.860898 AATAGATTGCTTGGTAAAAGAACATTC 57.139 29.630 0.00 0.00 0.00 2.67
3079 3367 5.049680 TGCTTGGTAAAAGAACATTCGTCTC 60.050 40.000 0.00 0.00 0.00 3.36
3085 3373 7.021790 GGTAAAAGAACATTCGTCTCAAATCC 58.978 38.462 0.00 0.00 0.00 3.01
3096 3384 5.168569 TCGTCTCAAATCCTGTAATCACAC 58.831 41.667 0.00 0.00 0.00 3.82
3097 3385 4.031765 CGTCTCAAATCCTGTAATCACACG 59.968 45.833 0.00 0.00 0.00 4.49
3103 3391 7.100409 TCAAATCCTGTAATCACACGAACATA 58.900 34.615 0.00 0.00 0.00 2.29
3105 3393 8.397906 CAAATCCTGTAATCACACGAACATATT 58.602 33.333 0.00 0.00 0.00 1.28
3107 3395 7.915293 TCCTGTAATCACACGAACATATTTT 57.085 32.000 0.00 0.00 0.00 1.82
3118 3406 8.973378 CACACGAACATATTTTGTAATGGTTTT 58.027 29.630 0.00 0.00 37.68 2.43
3129 3417 9.791801 ATTTTGTAATGGTTTTCCTTAGCAAAT 57.208 25.926 0.00 0.00 41.38 2.32
3130 3418 9.620259 TTTTGTAATGGTTTTCCTTAGCAAATT 57.380 25.926 0.00 0.00 41.38 1.82
3161 3449 4.836125 AGAATGTAAACCAACTGCACAG 57.164 40.909 0.00 0.00 0.00 3.66
3165 3453 3.561143 TGTAAACCAACTGCACAGGATT 58.439 40.909 2.21 0.00 0.00 3.01
3208 3496 4.884668 ACTTCATAGTTTCCGTTCCTCA 57.115 40.909 0.00 0.00 0.00 3.86
3209 3497 5.422214 ACTTCATAGTTTCCGTTCCTCAT 57.578 39.130 0.00 0.00 0.00 2.90
3298 3586 1.967319 TGGGTTCTGAAGCACTTGAC 58.033 50.000 19.89 3.57 0.00 3.18
3304 3592 4.083802 GGTTCTGAAGCACTTGACATGTAC 60.084 45.833 14.25 0.00 0.00 2.90
3308 3596 3.926527 TGAAGCACTTGACATGTACGATC 59.073 43.478 0.00 0.00 0.00 3.69
3316 3607 7.394099 CACTTGACATGTACGATCATTAACAG 58.606 38.462 0.00 0.00 0.00 3.16
3364 3660 2.816087 TCACCTCTTCTTTTGCTGCATC 59.184 45.455 1.84 0.00 0.00 3.91
3401 3697 3.259876 TCTGCAGTTACCGGAAGTTATGT 59.740 43.478 14.67 0.00 0.00 2.29
3428 3724 2.893489 GGGCTGTGAATTCAAGGACTTT 59.107 45.455 10.35 0.00 0.00 2.66
3455 3751 1.654463 CGTTTCGCCACTTTTACACG 58.346 50.000 0.00 0.00 0.00 4.49
3458 3754 0.885596 TTCGCCACTTTTACACGGGG 60.886 55.000 0.00 0.00 0.00 5.73
3482 3778 4.877773 AGGATGAGAAGTGATCCTGTAGT 58.122 43.478 0.00 0.00 45.69 2.73
3483 3779 4.892934 AGGATGAGAAGTGATCCTGTAGTC 59.107 45.833 0.00 0.00 45.69 2.59
3501 3797 1.197721 GTCATCCCAGCAAACTTGTCG 59.802 52.381 0.00 0.00 0.00 4.35
3508 3804 1.065109 GCAAACTTGTCGCCGGTTT 59.935 52.632 1.90 0.00 34.10 3.27
3547 3843 8.599624 ATGTCCTCCAATTGATTGAATTTAGT 57.400 30.769 7.12 0.00 40.14 2.24
3584 3888 1.421646 CCCAGACAAGGTTGGAGTCTT 59.578 52.381 0.00 0.00 40.42 3.01
3638 3942 2.607771 CGGCAACCAAGTTTCCAGATTG 60.608 50.000 0.00 0.00 28.48 2.67
3663 3967 7.865385 TGTCTTCCTGTTTTGGAAAATAAATCG 59.135 33.333 0.00 0.00 44.49 3.34
3668 3972 6.586082 CCTGTTTTGGAAAATAAATCGAGGTG 59.414 38.462 0.00 0.00 0.00 4.00
3669 3973 7.045126 TGTTTTGGAAAATAAATCGAGGTGT 57.955 32.000 0.00 0.00 0.00 4.16
3685 3989 3.291584 AGGTGTCGATCTGCATCTCTTA 58.708 45.455 0.00 0.00 0.00 2.10
3686 3990 3.067461 AGGTGTCGATCTGCATCTCTTAC 59.933 47.826 0.00 0.00 0.00 2.34
3694 4009 5.757320 CGATCTGCATCTCTTACTCCATTTT 59.243 40.000 0.00 0.00 0.00 1.82
3724 4039 5.470098 GCTTGGACTCTGTTCATAAAGTTCA 59.530 40.000 0.00 0.00 0.00 3.18
3725 4040 6.566753 GCTTGGACTCTGTTCATAAAGTTCAC 60.567 42.308 0.00 0.00 27.00 3.18
3742 4059 2.964209 TCACCCATACCCTTGCAAAAA 58.036 42.857 0.00 0.00 0.00 1.94
3748 4065 3.578688 CATACCCTTGCAAAAAGCTGAC 58.421 45.455 0.00 0.00 45.94 3.51
3759 4076 4.681483 GCAAAAAGCTGACATAAAGTGGAC 59.319 41.667 0.00 0.00 41.15 4.02
3773 4090 9.020731 ACATAAAGTGGACCTTTAATTTAGGTG 57.979 33.333 14.65 2.82 46.07 4.00
3774 4091 9.238368 CATAAAGTGGACCTTTAATTTAGGTGA 57.762 33.333 14.65 1.66 46.07 4.02
3775 4092 9.816787 ATAAAGTGGACCTTTAATTTAGGTGAA 57.183 29.630 14.65 2.82 46.07 3.18
3776 4093 8.721133 AAAGTGGACCTTTAATTTAGGTGAAT 57.279 30.769 14.65 1.19 45.88 2.57
3777 4094 8.721133 AAGTGGACCTTTAATTTAGGTGAATT 57.279 30.769 14.65 6.04 45.88 2.17
3778 4095 9.816787 AAGTGGACCTTTAATTTAGGTGAATTA 57.183 29.630 14.65 0.00 45.88 1.40
3779 4096 9.816787 AGTGGACCTTTAATTTAGGTGAATTAA 57.183 29.630 14.65 0.00 45.88 1.40
3781 4098 8.745590 TGGACCTTTAATTTAGGTGAATTAAGC 58.254 33.333 14.65 1.13 45.88 3.09
3782 4099 7.913821 GGACCTTTAATTTAGGTGAATTAAGCG 59.086 37.037 14.65 0.00 45.88 4.68
3783 4100 7.768240 ACCTTTAATTTAGGTGAATTAAGCGG 58.232 34.615 10.28 13.24 44.25 5.52
3784 4101 6.695713 CCTTTAATTTAGGTGAATTAAGCGGC 59.304 38.462 0.00 0.00 40.55 6.53
3785 4102 7.399245 TTTAATTTAGGTGAATTAAGCGGCT 57.601 32.000 0.00 0.00 40.55 5.52
3786 4103 8.508883 TTTAATTTAGGTGAATTAAGCGGCTA 57.491 30.769 1.35 0.00 40.55 3.93
3787 4104 6.619801 AATTTAGGTGAATTAAGCGGCTAG 57.380 37.500 1.35 0.00 0.00 3.42
3788 4105 2.622064 AGGTGAATTAAGCGGCTAGG 57.378 50.000 1.35 0.00 0.00 3.02
3789 4106 0.945099 GGTGAATTAAGCGGCTAGGC 59.055 55.000 1.35 6.15 0.00 3.93
3790 4107 1.663695 GTGAATTAAGCGGCTAGGCA 58.336 50.000 17.45 0.00 34.64 4.75
3791 4108 2.014128 GTGAATTAAGCGGCTAGGCAA 58.986 47.619 17.45 3.05 34.64 4.52
3792 4109 2.422127 GTGAATTAAGCGGCTAGGCAAA 59.578 45.455 17.45 5.08 34.64 3.68
3793 4110 2.682856 TGAATTAAGCGGCTAGGCAAAG 59.317 45.455 17.45 0.94 34.64 2.77
3794 4111 2.420058 ATTAAGCGGCTAGGCAAAGT 57.580 45.000 17.45 0.65 34.64 2.66
3795 4112 1.448985 TTAAGCGGCTAGGCAAAGTG 58.551 50.000 17.45 0.15 34.64 3.16
3796 4113 0.323629 TAAGCGGCTAGGCAAAGTGT 59.676 50.000 17.45 0.00 34.64 3.55
3797 4114 0.323629 AAGCGGCTAGGCAAAGTGTA 59.676 50.000 17.45 0.00 34.64 2.90
3798 4115 0.323629 AGCGGCTAGGCAAAGTGTAA 59.676 50.000 17.45 0.00 34.64 2.41
3799 4116 1.161843 GCGGCTAGGCAAAGTGTAAA 58.838 50.000 17.45 0.00 0.00 2.01
3800 4117 1.538075 GCGGCTAGGCAAAGTGTAAAA 59.462 47.619 17.45 0.00 0.00 1.52
3801 4118 2.667448 GCGGCTAGGCAAAGTGTAAAAC 60.667 50.000 17.45 0.00 0.00 2.43
3802 4119 2.812011 CGGCTAGGCAAAGTGTAAAACT 59.188 45.455 17.45 0.00 42.60 2.66
3803 4120 3.364964 CGGCTAGGCAAAGTGTAAAACTG 60.365 47.826 17.45 0.00 39.81 3.16
3804 4121 3.818773 GGCTAGGCAAAGTGTAAAACTGA 59.181 43.478 12.16 0.00 39.81 3.41
3805 4122 4.459337 GGCTAGGCAAAGTGTAAAACTGAT 59.541 41.667 12.16 0.00 39.81 2.90
3806 4123 5.392057 GGCTAGGCAAAGTGTAAAACTGATC 60.392 44.000 12.16 0.00 39.81 2.92
3807 4124 5.412904 GCTAGGCAAAGTGTAAAACTGATCT 59.587 40.000 0.00 0.00 39.81 2.75
3808 4125 6.594159 GCTAGGCAAAGTGTAAAACTGATCTA 59.406 38.462 0.00 0.00 39.81 1.98
3809 4126 7.281100 GCTAGGCAAAGTGTAAAACTGATCTAT 59.719 37.037 0.00 0.00 39.81 1.98
3810 4127 7.617041 AGGCAAAGTGTAAAACTGATCTATC 57.383 36.000 0.00 0.00 39.81 2.08
3811 4128 7.168219 AGGCAAAGTGTAAAACTGATCTATCA 58.832 34.615 0.00 0.00 39.81 2.15
3821 4138 2.803285 TGATCTATCAGAAGGCCCCT 57.197 50.000 0.00 0.00 32.11 4.79
3822 4139 2.333069 TGATCTATCAGAAGGCCCCTG 58.667 52.381 14.77 14.77 32.11 4.45
3823 4140 1.003003 GATCTATCAGAAGGCCCCTGC 59.997 57.143 15.82 0.32 0.00 4.85
3824 4141 1.070445 CTATCAGAAGGCCCCTGCG 59.930 63.158 15.82 5.40 38.85 5.18
3825 4142 1.689233 TATCAGAAGGCCCCTGCGT 60.689 57.895 15.82 10.40 38.85 5.24
3826 4143 1.686325 TATCAGAAGGCCCCTGCGTC 61.686 60.000 15.82 0.00 38.85 5.19
3843 4160 4.143333 CGGGCGACTCGGTTGGAT 62.143 66.667 0.00 0.00 0.00 3.41
3844 4161 2.202892 GGGCGACTCGGTTGGATC 60.203 66.667 0.00 0.00 0.00 3.36
3845 4162 2.202892 GGCGACTCGGTTGGATCC 60.203 66.667 4.20 4.20 0.00 3.36
3846 4163 2.577059 GCGACTCGGTTGGATCCA 59.423 61.111 11.44 11.44 0.00 3.41
3847 4164 1.079405 GCGACTCGGTTGGATCCAA 60.079 57.895 23.63 23.63 0.00 3.53
3848 4165 0.672401 GCGACTCGGTTGGATCCAAA 60.672 55.000 28.64 12.79 37.70 3.28
3849 4166 1.076332 CGACTCGGTTGGATCCAAAC 58.924 55.000 29.58 29.58 40.02 2.93
3850 4167 1.450025 GACTCGGTTGGATCCAAACC 58.550 55.000 32.15 28.00 40.28 3.27
3851 4168 0.037734 ACTCGGTTGGATCCAAACCC 59.962 55.000 32.15 25.60 40.28 4.11
3852 4169 0.328258 CTCGGTTGGATCCAAACCCT 59.672 55.000 32.15 0.00 40.28 4.34
3853 4170 1.557832 CTCGGTTGGATCCAAACCCTA 59.442 52.381 32.15 19.28 40.28 3.53
3854 4171 1.557832 TCGGTTGGATCCAAACCCTAG 59.442 52.381 32.15 20.18 40.28 3.02
3855 4172 1.280998 CGGTTGGATCCAAACCCTAGT 59.719 52.381 32.15 0.00 40.28 2.57
3856 4173 2.679930 CGGTTGGATCCAAACCCTAGTC 60.680 54.545 32.15 16.20 40.28 2.59
3857 4174 2.629051 GTTGGATCCAAACCCTAGTCG 58.371 52.381 28.64 0.00 37.70 4.18
3858 4175 0.539986 TGGATCCAAACCCTAGTCGC 59.460 55.000 13.46 0.00 0.00 5.19
3859 4176 0.179054 GGATCCAAACCCTAGTCGCC 60.179 60.000 6.95 0.00 0.00 5.54
3860 4177 0.529992 GATCCAAACCCTAGTCGCCG 60.530 60.000 0.00 0.00 0.00 6.46
3861 4178 1.968050 ATCCAAACCCTAGTCGCCGG 61.968 60.000 0.00 0.00 0.00 6.13
3862 4179 2.125269 CAAACCCTAGTCGCCGGG 60.125 66.667 2.18 0.00 46.26 5.73
3863 4180 3.396570 AAACCCTAGTCGCCGGGG 61.397 66.667 13.31 13.31 45.07 5.73
3881 4198 2.132300 GGCACCATCTCCTCTCTCC 58.868 63.158 0.00 0.00 0.00 3.71
3882 4199 1.406860 GGCACCATCTCCTCTCTCCC 61.407 65.000 0.00 0.00 0.00 4.30
3883 4200 0.398381 GCACCATCTCCTCTCTCCCT 60.398 60.000 0.00 0.00 0.00 4.20
3884 4201 1.969240 GCACCATCTCCTCTCTCCCTT 60.969 57.143 0.00 0.00 0.00 3.95
3885 4202 2.038659 CACCATCTCCTCTCTCCCTTC 58.961 57.143 0.00 0.00 0.00 3.46
3886 4203 1.062505 ACCATCTCCTCTCTCCCTTCC 60.063 57.143 0.00 0.00 0.00 3.46
3887 4204 1.220236 CCATCTCCTCTCTCCCTTCCT 59.780 57.143 0.00 0.00 0.00 3.36
3888 4205 2.360209 CCATCTCCTCTCTCCCTTCCTT 60.360 54.545 0.00 0.00 0.00 3.36
3889 4206 2.541233 TCTCCTCTCTCCCTTCCTTG 57.459 55.000 0.00 0.00 0.00 3.61
3890 4207 0.829990 CTCCTCTCTCCCTTCCTTGC 59.170 60.000 0.00 0.00 0.00 4.01
3891 4208 0.972983 TCCTCTCTCCCTTCCTTGCG 60.973 60.000 0.00 0.00 0.00 4.85
3892 4209 1.261238 CCTCTCTCCCTTCCTTGCGT 61.261 60.000 0.00 0.00 0.00 5.24
3951 4268 1.787112 AGGCTCTCCTCACTTCCCT 59.213 57.895 0.00 0.00 38.72 4.20
3952 4269 1.011595 AGGCTCTCCTCACTTCCCTA 58.988 55.000 0.00 0.00 38.72 3.53
3954 4271 1.619977 GGCTCTCCTCACTTCCCTACA 60.620 57.143 0.00 0.00 0.00 2.74
3956 4273 2.364002 GCTCTCCTCACTTCCCTACATC 59.636 54.545 0.00 0.00 0.00 3.06
3957 4274 2.621055 CTCTCCTCACTTCCCTACATCG 59.379 54.545 0.00 0.00 0.00 3.84
3964 4281 0.178068 CTTCCCTACATCGGTGGGTG 59.822 60.000 0.00 0.00 43.75 4.61
3966 4283 1.993391 CCCTACATCGGTGGGTGGT 60.993 63.158 0.00 0.00 43.75 4.16
3995 4312 3.770040 CGGTGCGTGGAGGGATCA 61.770 66.667 0.00 0.00 0.00 2.92
3996 4313 2.125106 GGTGCGTGGAGGGATCAC 60.125 66.667 0.00 0.00 0.00 3.06
4002 4319 0.833287 CGTGGAGGGATCACCAAGAT 59.167 55.000 11.13 0.00 43.89 2.40
4008 4325 4.464262 GATCACCAAGATCCGGGC 57.536 61.111 0.00 0.00 46.10 6.13
4046 4363 3.643595 CTCCCGGCAATGGCTTGGA 62.644 63.158 12.80 12.80 40.87 3.53
4048 4365 3.814268 CCGGCAATGGCTTGGACG 61.814 66.667 5.02 0.00 40.87 4.79
4049 4366 3.814268 CGGCAATGGCTTGGACGG 61.814 66.667 5.02 0.00 40.87 4.79
4050 4367 4.133796 GGCAATGGCTTGGACGGC 62.134 66.667 0.00 0.00 40.87 5.68
4051 4368 4.481112 GCAATGGCTTGGACGGCG 62.481 66.667 4.80 4.80 36.96 6.46
4052 4369 3.814268 CAATGGCTTGGACGGCGG 61.814 66.667 13.24 0.00 0.00 6.13
4095 4412 3.145286 TCTCATCGCTCTAGTCCTCATG 58.855 50.000 0.00 0.00 0.00 3.07
4098 4415 1.974265 TCGCTCTAGTCCTCATGGAG 58.026 55.000 0.00 0.00 44.16 3.86
4107 4424 2.183679 GTCCTCATGGAGAACTCTGGT 58.816 52.381 0.00 0.00 44.16 4.00
4140 4458 2.125310 CATTAGGTGTGGCGGCGA 60.125 61.111 12.98 0.00 0.00 5.54
4154 4472 3.791539 GCGACGTCCTCGACTAGA 58.208 61.111 10.58 0.00 46.14 2.43
4183 4501 2.351276 GTGGTGGATGGACGGCTT 59.649 61.111 0.00 0.00 0.00 4.35
4199 4517 2.361104 TTCTTGACCGCATGGGCC 60.361 61.111 3.80 0.00 46.01 5.80
4208 4526 4.120331 GCATGGGCCGTGAGTTGC 62.120 66.667 29.62 9.70 0.00 4.17
4223 4541 1.306141 TTGCCGGTGGATCTCCTCT 60.306 57.895 1.90 0.00 36.82 3.69
4226 4544 2.196925 CCGGTGGATCTCCTCTCCG 61.197 68.421 15.60 15.60 41.27 4.63
4228 4546 3.133946 GTGGATCTCCTCTCCGCC 58.866 66.667 0.00 0.00 37.33 6.13
4229 4547 2.519541 TGGATCTCCTCTCCGCCG 60.520 66.667 0.00 0.00 35.41 6.46
4230 4548 3.984749 GGATCTCCTCTCCGCCGC 61.985 72.222 0.00 0.00 0.00 6.53
4231 4549 3.219928 GATCTCCTCTCCGCCGCA 61.220 66.667 0.00 0.00 0.00 5.69
4232 4550 2.522923 ATCTCCTCTCCGCCGCAT 60.523 61.111 0.00 0.00 0.00 4.73
4238 4556 3.206211 CTCTCCGCCGCATCCTCTC 62.206 68.421 0.00 0.00 0.00 3.20
4250 4568 4.154347 CCTCTCTCCCGCTGCACC 62.154 72.222 0.00 0.00 0.00 5.01
4267 4585 2.743928 CTGGTGGCTTGCGGTCTC 60.744 66.667 0.00 0.00 0.00 3.36
4291 4609 4.308458 CGGGCTCGGTGTGTTGGA 62.308 66.667 0.00 0.00 0.00 3.53
4292 4610 2.358737 GGGCTCGGTGTGTTGGAG 60.359 66.667 0.00 0.00 0.00 3.86
4310 4628 2.285442 GGGGCTGGTAGAGGTGGT 60.285 66.667 0.00 0.00 0.00 4.16
4318 4636 1.264295 GGTAGAGGTGGTTTCGGACT 58.736 55.000 0.00 0.00 0.00 3.85
4319 4637 1.067071 GGTAGAGGTGGTTTCGGACTG 60.067 57.143 0.00 0.00 0.00 3.51
4320 4638 1.891150 GTAGAGGTGGTTTCGGACTGA 59.109 52.381 0.00 0.00 0.00 3.41
4323 4641 0.396811 AGGTGGTTTCGGACTGAAGG 59.603 55.000 0.00 0.00 37.99 3.46
4329 4647 2.806818 GGTTTCGGACTGAAGGAAACTC 59.193 50.000 13.51 3.40 45.39 3.01
4331 4649 3.386768 TTCGGACTGAAGGAAACTCTG 57.613 47.619 0.00 0.00 42.68 3.35
4338 4656 1.004745 TGAAGGAAACTCTGGATGGCC 59.995 52.381 0.00 0.00 42.68 5.36
4344 4662 4.598894 CTCTGGATGGCCCGCTCG 62.599 72.222 0.00 0.00 37.93 5.03
4370 4688 2.737376 GTGGCGACGACCAAGGTC 60.737 66.667 9.22 9.22 42.70 3.85
4382 4700 1.134310 ACCAAGGTCGTCGTTTTCCTT 60.134 47.619 0.00 0.56 40.38 3.36
4383 4701 1.529865 CCAAGGTCGTCGTTTTCCTTC 59.470 52.381 9.42 0.00 38.09 3.46
4386 4704 2.480845 AGGTCGTCGTTTTCCTTCTTG 58.519 47.619 0.00 0.00 0.00 3.02
4387 4705 1.070108 GGTCGTCGTTTTCCTTCTTGC 60.070 52.381 0.00 0.00 0.00 4.01
4388 4706 1.595794 GTCGTCGTTTTCCTTCTTGCA 59.404 47.619 0.00 0.00 0.00 4.08
4390 4708 1.069906 CGTCGTTTTCCTTCTTGCAGG 60.070 52.381 0.00 0.00 34.86 4.85
4395 4713 2.974692 TTTCCTTCTTGCAGGCGCCA 62.975 55.000 31.54 4.59 37.32 5.69
4463 4781 1.961180 AAGTCTCCTCGGATTGGGCG 61.961 60.000 0.00 0.00 0.00 6.13
4464 4782 3.154473 TCTCCTCGGATTGGGCGG 61.154 66.667 0.00 0.00 0.00 6.13
4465 4783 4.918201 CTCCTCGGATTGGGCGGC 62.918 72.222 0.00 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.692406 GTCTCACGGGCTTCGGGT 61.692 66.667 2.61 0.00 43.95 5.28
15 16 4.796231 CGTCTCACGGGCTTCGGG 62.796 72.222 5.17 0.89 45.15 5.14
26 27 1.979155 CTCTGCCTGGGACGTCTCA 60.979 63.158 18.94 18.94 0.00 3.27
40 41 4.101448 CAACCTCCGCCCCCTCTG 62.101 72.222 0.00 0.00 0.00 3.35
74 75 0.471211 TCAATAGCCCCGTCCCCTAG 60.471 60.000 0.00 0.00 0.00 3.02
75 76 0.192566 ATCAATAGCCCCGTCCCCTA 59.807 55.000 0.00 0.00 0.00 3.53
77 78 1.073199 CATCAATAGCCCCGTCCCC 59.927 63.158 0.00 0.00 0.00 4.81
78 79 1.600916 GCATCAATAGCCCCGTCCC 60.601 63.158 0.00 0.00 0.00 4.46
91 92 1.554617 TCATGTTCTTCTCCGGCATCA 59.445 47.619 0.00 0.00 0.00 3.07
114 115 1.672737 CCATCGCACTAAGCACTCACA 60.673 52.381 0.00 0.00 46.13 3.58
116 117 0.740868 GCCATCGCACTAAGCACTCA 60.741 55.000 0.00 0.00 46.13 3.41
118 119 1.296392 TGCCATCGCACTAAGCACT 59.704 52.632 0.00 0.00 46.13 4.40
129 130 1.263484 GAATCACTGCTCATGCCATCG 59.737 52.381 0.00 0.00 38.71 3.84
143 144 0.179134 CTCGTCCTCCCGTGAATCAC 60.179 60.000 2.75 2.75 0.00 3.06
165 166 3.657448 TACCATGCTCACCACGCCG 62.657 63.158 0.00 0.00 0.00 6.46
194 195 1.433879 CCTACTCTCACCTTCCGCG 59.566 63.158 0.00 0.00 0.00 6.46
197 198 1.562783 ACTGCCTACTCTCACCTTCC 58.437 55.000 0.00 0.00 0.00 3.46
199 200 3.100671 CCTAACTGCCTACTCTCACCTT 58.899 50.000 0.00 0.00 0.00 3.50
202 203 2.097791 CGTCCTAACTGCCTACTCTCAC 59.902 54.545 0.00 0.00 0.00 3.51
203 204 2.366533 CGTCCTAACTGCCTACTCTCA 58.633 52.381 0.00 0.00 0.00 3.27
204 205 1.677052 CCGTCCTAACTGCCTACTCTC 59.323 57.143 0.00 0.00 0.00 3.20
205 206 1.765230 CCGTCCTAACTGCCTACTCT 58.235 55.000 0.00 0.00 0.00 3.24
206 207 0.102663 GCCGTCCTAACTGCCTACTC 59.897 60.000 0.00 0.00 30.10 2.59
215 216 1.571215 CCAACCAACGCCGTCCTAAC 61.571 60.000 0.00 0.00 0.00 2.34
221 222 1.153127 TTCTTCCAACCAACGCCGT 60.153 52.632 0.00 0.00 0.00 5.68
222 223 0.882927 TCTTCTTCCAACCAACGCCG 60.883 55.000 0.00 0.00 0.00 6.46
225 226 3.127895 TGTTGTTCTTCTTCCAACCAACG 59.872 43.478 0.00 0.00 38.10 4.10
234 235 3.149196 TGCCCTCATGTTGTTCTTCTTC 58.851 45.455 0.00 0.00 0.00 2.87
243 244 1.673626 GCCACAATTGCCCTCATGTTG 60.674 52.381 5.05 0.00 0.00 3.33
247 248 2.053865 CGGCCACAATTGCCCTCAT 61.054 57.895 5.05 0.00 46.48 2.90
254 255 0.887247 TCATCCAACGGCCACAATTG 59.113 50.000 2.24 3.24 0.00 2.32
255 256 1.545582 CTTCATCCAACGGCCACAATT 59.454 47.619 2.24 0.00 0.00 2.32
258 259 0.327924 ATCTTCATCCAACGGCCACA 59.672 50.000 2.24 0.00 0.00 4.17
288 289 2.741759 AACATGCCCGTTGATTTTCC 57.258 45.000 0.00 0.00 0.00 3.13
289 290 6.147000 ACAATAAAACATGCCCGTTGATTTTC 59.853 34.615 0.00 0.00 0.00 2.29
294 295 3.823873 AGACAATAAAACATGCCCGTTGA 59.176 39.130 0.00 0.00 0.00 3.18
295 296 4.173036 AGACAATAAAACATGCCCGTTG 57.827 40.909 0.00 0.00 0.00 4.10
299 300 5.823045 AGCTACTAGACAATAAAACATGCCC 59.177 40.000 0.00 0.00 0.00 5.36
431 497 3.548818 GCCAATTTAGCGCTAGACCATTG 60.549 47.826 17.98 20.53 0.00 2.82
466 537 3.187637 TCACGCTGGTAAAAGGAAAATCG 59.812 43.478 0.00 0.00 0.00 3.34
554 642 8.751302 ACGAACAGTAAAAACACATTCTTTTT 57.249 26.923 0.00 0.00 35.49 1.94
559 647 5.395486 GCAGACGAACAGTAAAAACACATTC 59.605 40.000 0.00 0.00 0.00 2.67
565 653 5.080068 GCTATGCAGACGAACAGTAAAAAC 58.920 41.667 0.00 0.00 0.00 2.43
821 967 2.890474 CTGGGATTCGGCGAACGG 60.890 66.667 26.22 13.63 44.45 4.44
964 1135 3.501349 TCTATCAGGTATCAGTGGAGCC 58.499 50.000 0.00 0.00 0.00 4.70
979 1150 1.335415 GCTCGCTCGCTGATTCTATCA 60.335 52.381 0.00 0.00 37.76 2.15
985 1159 1.886313 CCATGCTCGCTCGCTGATT 60.886 57.895 0.00 0.00 0.00 2.57
987 1161 4.519437 CCCATGCTCGCTCGCTGA 62.519 66.667 0.00 0.00 0.00 4.26
992 1166 2.821366 CACCACCCATGCTCGCTC 60.821 66.667 0.00 0.00 0.00 5.03
1005 1179 0.984230 GTCTCCTCCATCCAACACCA 59.016 55.000 0.00 0.00 0.00 4.17
1029 1203 2.590391 ATCTCTGCCGCAGCTTGGAG 62.590 60.000 15.98 7.81 40.80 3.86
1100 1274 1.925455 ATGTGGGGTGGAGGTGGAG 60.925 63.158 0.00 0.00 0.00 3.86
1147 1328 0.321564 ATACTGCAGGCAAGAACGCA 60.322 50.000 19.93 0.00 0.00 5.24
1165 1346 2.498167 GCTAAGCATTCGGATGTGGAT 58.502 47.619 5.39 0.00 35.63 3.41
1177 1358 2.170187 CAGAGAGGAAGTGGCTAAGCAT 59.830 50.000 0.00 0.00 0.00 3.79
1184 1365 0.036022 ACAAGCAGAGAGGAAGTGGC 59.964 55.000 0.00 0.00 0.00 5.01
1453 1635 0.250901 TTGGCAAGAAGGGCTCACTC 60.251 55.000 0.00 0.00 0.00 3.51
1454 1636 0.538287 GTTGGCAAGAAGGGCTCACT 60.538 55.000 0.00 0.00 0.00 3.41
1455 1637 0.538287 AGTTGGCAAGAAGGGCTCAC 60.538 55.000 0.00 0.00 0.00 3.51
1456 1638 0.185901 AAGTTGGCAAGAAGGGCTCA 59.814 50.000 0.00 0.00 0.00 4.26
1457 1639 0.884514 GAAGTTGGCAAGAAGGGCTC 59.115 55.000 0.00 0.00 0.00 4.70
1506 1690 6.147656 GCAAACCAATTTTGAACAGGGAATAG 59.852 38.462 0.91 0.00 46.76 1.73
1547 1731 6.600427 TGCTGAACATGATAGAATCAATGTGT 59.400 34.615 0.00 0.00 43.50 3.72
1548 1732 7.023197 TGCTGAACATGATAGAATCAATGTG 57.977 36.000 0.00 0.00 43.50 3.21
1552 1810 7.012989 CCTCATTGCTGAACATGATAGAATCAA 59.987 37.037 0.00 0.00 43.50 2.57
1556 1814 5.993055 TCCTCATTGCTGAACATGATAGAA 58.007 37.500 0.00 0.00 0.00 2.10
1562 1820 2.223735 GGCATCCTCATTGCTGAACATG 60.224 50.000 0.00 0.00 40.03 3.21
1571 1829 3.446161 ACTTGTTCATGGCATCCTCATTG 59.554 43.478 0.00 0.00 0.00 2.82
1589 1847 2.363788 TTCCATCGTCCGAGAACTTG 57.636 50.000 0.00 0.00 0.00 3.16
1640 1898 0.025898 TTACGACATCGCTCGACTCG 59.974 55.000 15.38 15.38 44.43 4.18
1715 1973 3.441572 GCTAGTGCTTGTGAATCACCAAT 59.558 43.478 11.24 3.80 36.03 3.16
1853 2111 2.259012 TGTATAACCACGGTCCAAGGT 58.741 47.619 0.00 0.00 37.20 3.50
1910 2168 5.358298 TCTTGACATGTCCGTAGATATCG 57.642 43.478 22.85 0.00 0.00 2.92
1919 2177 1.730501 ACTGCATCTTGACATGTCCG 58.269 50.000 22.85 13.79 0.00 4.79
1944 2202 4.339530 GGCAGATCATAACCTTTCCTTTCC 59.660 45.833 0.00 0.00 0.00 3.13
1949 2207 4.464008 TGATGGCAGATCATAACCTTTCC 58.536 43.478 0.00 0.00 0.00 3.13
1958 2216 5.938710 GTGATTCTGTATGATGGCAGATCAT 59.061 40.000 13.34 13.34 40.83 2.45
1979 2238 7.252612 TCCAACTACTAATCTCAAATGGTGA 57.747 36.000 0.00 0.00 34.17 4.02
1990 2249 9.668497 AAGTATTCAGGTTTCCAACTACTAATC 57.332 33.333 0.00 0.00 0.00 1.75
2149 2408 1.793258 TCATCGGTTTTTCGGCGTAA 58.207 45.000 6.85 0.00 0.00 3.18
2460 2719 4.021894 TCTCAGTCAAGAGCTGGAGTAAAC 60.022 45.833 0.00 0.00 35.59 2.01
2497 2756 5.009310 GCCTGAATCATCTGTGCATGAATAA 59.991 40.000 0.00 0.00 36.36 1.40
2499 2758 3.318275 GCCTGAATCATCTGTGCATGAAT 59.682 43.478 0.00 0.00 36.36 2.57
2520 2779 9.774742 CCTTAAAAGTACATATCAAAAGTGAGC 57.225 33.333 0.00 0.00 37.14 4.26
2557 2816 1.746220 GCCATGGCCGTATTGTTACAA 59.254 47.619 27.24 0.00 34.56 2.41
2568 2827 1.303074 ATGCTGATAGCCATGGCCG 60.303 57.895 33.14 16.80 41.51 6.13
2694 2953 8.680903 CAAGCAACAATAAAGTGATAAGGAGAT 58.319 33.333 0.00 0.00 0.00 2.75
2701 2960 6.094048 GCCTCTCAAGCAACAATAAAGTGATA 59.906 38.462 0.00 0.00 0.00 2.15
2703 2962 4.216257 GCCTCTCAAGCAACAATAAAGTGA 59.784 41.667 0.00 0.00 0.00 3.41
2704 2963 4.022935 TGCCTCTCAAGCAACAATAAAGTG 60.023 41.667 0.00 0.00 37.28 3.16
2705 2964 4.144297 TGCCTCTCAAGCAACAATAAAGT 58.856 39.130 0.00 0.00 37.28 2.66
2706 2965 4.771590 TGCCTCTCAAGCAACAATAAAG 57.228 40.909 0.00 0.00 37.28 1.85
2715 2975 5.052693 ACCATATTAATGCCTCTCAAGCA 57.947 39.130 0.00 0.00 45.94 3.91
2717 2977 7.118971 GCTAAGACCATATTAATGCCTCTCAAG 59.881 40.741 0.00 0.00 0.00 3.02
2724 2984 6.884280 ACAAGCTAAGACCATATTAATGCC 57.116 37.500 0.00 0.00 0.00 4.40
2728 2988 8.447833 CGTTTGAACAAGCTAAGACCATATTAA 58.552 33.333 0.00 0.00 0.00 1.40
2731 2991 5.938125 ACGTTTGAACAAGCTAAGACCATAT 59.062 36.000 0.00 0.00 0.00 1.78
2734 2994 3.537580 ACGTTTGAACAAGCTAAGACCA 58.462 40.909 0.00 0.00 0.00 4.02
2741 3001 7.381139 CACCATAATTTAACGTTTGAACAAGCT 59.619 33.333 5.91 0.00 0.00 3.74
2746 3006 8.024285 TCCATCACCATAATTTAACGTTTGAAC 58.976 33.333 5.91 0.00 0.00 3.18
2754 3014 8.161699 ATTACGGTCCATCACCATAATTTAAC 57.838 34.615 0.00 0.00 40.02 2.01
2773 3033 9.716507 CATTTACACCTGAATAGAAAATTACGG 57.283 33.333 0.00 0.00 0.00 4.02
2779 3039 9.787435 ACTACACATTTACACCTGAATAGAAAA 57.213 29.630 0.00 0.00 0.00 2.29
2783 3043 7.817478 TGTCACTACACATTTACACCTGAATAG 59.183 37.037 0.00 0.00 0.00 1.73
2818 3106 9.896645 ATAAGCTGAAGATGAGAATTTTCAGTA 57.103 29.630 16.01 6.42 45.12 2.74
2833 3121 7.564793 TCAACTTATAAGGCATAAGCTGAAGA 58.435 34.615 16.73 0.00 46.99 2.87
2837 3125 8.158169 TCATTCAACTTATAAGGCATAAGCTG 57.842 34.615 16.73 3.89 46.99 4.24
2881 3169 0.985760 TAGCCCCAAAAGGAGCGTAA 59.014 50.000 0.00 0.00 38.24 3.18
2883 3171 0.331616 ATTAGCCCCAAAAGGAGCGT 59.668 50.000 0.00 0.00 38.24 5.07
2884 3172 1.405463 GAATTAGCCCCAAAAGGAGCG 59.595 52.381 0.00 0.00 38.24 5.03
2892 3180 2.896685 CACTGTTTGGAATTAGCCCCAA 59.103 45.455 0.00 0.00 40.38 4.12
2904 3192 5.007034 TGGGTTATATGTGTCACTGTTTGG 58.993 41.667 4.27 0.00 0.00 3.28
2905 3193 5.705441 ACTGGGTTATATGTGTCACTGTTTG 59.295 40.000 4.27 0.00 0.00 2.93
2906 3194 5.876357 ACTGGGTTATATGTGTCACTGTTT 58.124 37.500 4.27 0.00 0.00 2.83
2958 3246 2.851195 ACCACCATCATAATTCCTCGC 58.149 47.619 0.00 0.00 0.00 5.03
2991 3279 6.073369 CGTCGCATTTGAATCATACCATTAG 58.927 40.000 0.00 0.00 0.00 1.73
3008 3296 1.266718 ACAGAACATTTTGCGTCGCAT 59.733 42.857 22.41 4.29 38.76 4.73
3009 3297 0.660488 ACAGAACATTTTGCGTCGCA 59.340 45.000 17.58 17.58 36.47 5.10
3010 3298 1.708680 GAACAGAACATTTTGCGTCGC 59.291 47.619 11.10 11.10 0.00 5.19
3011 3299 1.962547 CGAACAGAACATTTTGCGTCG 59.037 47.619 0.00 0.00 0.00 5.12
3048 3336 9.860898 GAATGTTCTTTTACCAAGCAATCTATT 57.139 29.630 0.00 0.00 0.00 1.73
3049 3337 8.184192 CGAATGTTCTTTTACCAAGCAATCTAT 58.816 33.333 0.00 0.00 0.00 1.98
3050 3338 7.174253 ACGAATGTTCTTTTACCAAGCAATCTA 59.826 33.333 0.00 0.00 0.00 1.98
3051 3339 6.016276 ACGAATGTTCTTTTACCAAGCAATCT 60.016 34.615 0.00 0.00 0.00 2.40
3067 3355 6.721571 TTACAGGATTTGAGACGAATGTTC 57.278 37.500 0.00 0.00 0.00 3.18
3074 3362 4.031765 CGTGTGATTACAGGATTTGAGACG 59.968 45.833 4.42 0.00 43.52 4.18
3096 3384 8.980143 AGGAAAACCATTACAAAATATGTTCG 57.020 30.769 0.00 0.00 43.63 3.95
3103 3391 9.791801 ATTTGCTAAGGAAAACCATTACAAAAT 57.208 25.926 0.00 0.00 0.00 1.82
3107 3395 9.921637 CTTAATTTGCTAAGGAAAACCATTACA 57.078 29.630 0.00 0.00 0.00 2.41
3136 3424 7.101652 TGTGCAGTTGGTTTACATTCTTTTA 57.898 32.000 0.00 0.00 0.00 1.52
3137 3425 5.971763 TGTGCAGTTGGTTTACATTCTTTT 58.028 33.333 0.00 0.00 0.00 2.27
3141 3429 3.568007 TCCTGTGCAGTTGGTTTACATTC 59.432 43.478 0.00 0.00 0.00 2.67
3151 3439 9.669353 GTTTAATATGATAATCCTGTGCAGTTG 57.331 33.333 0.00 0.00 0.00 3.16
3194 3482 3.328050 AGAGGAAATGAGGAACGGAAACT 59.672 43.478 0.00 0.00 0.00 2.66
3199 3487 1.339055 TGCAGAGGAAATGAGGAACGG 60.339 52.381 0.00 0.00 0.00 4.44
3201 3489 2.363683 CCTGCAGAGGAAATGAGGAAC 58.636 52.381 17.39 0.00 42.93 3.62
3202 3490 1.340405 GCCTGCAGAGGAAATGAGGAA 60.340 52.381 17.39 0.00 42.93 3.36
3203 3491 0.254178 GCCTGCAGAGGAAATGAGGA 59.746 55.000 17.39 0.00 42.93 3.71
3204 3492 0.255318 AGCCTGCAGAGGAAATGAGG 59.745 55.000 17.39 0.00 42.93 3.86
3205 3493 2.996249 TAGCCTGCAGAGGAAATGAG 57.004 50.000 17.39 0.00 42.93 2.90
3206 3494 3.264193 TCTTTAGCCTGCAGAGGAAATGA 59.736 43.478 17.39 8.58 42.93 2.57
3207 3495 3.614092 TCTTTAGCCTGCAGAGGAAATG 58.386 45.455 17.39 6.47 42.93 2.32
3208 3496 4.516652 ATCTTTAGCCTGCAGAGGAAAT 57.483 40.909 17.39 0.00 42.93 2.17
3209 3497 4.307032 AATCTTTAGCCTGCAGAGGAAA 57.693 40.909 17.39 10.61 42.93 3.13
3328 3624 8.990163 AGAAGAGGTGAAATGTAAGGTTTTTA 57.010 30.769 0.00 0.00 0.00 1.52
3329 3625 7.898014 AGAAGAGGTGAAATGTAAGGTTTTT 57.102 32.000 0.00 0.00 0.00 1.94
3364 3660 7.063544 GGTAACTGCAGAAACTAGTGATTAGTG 59.936 40.741 23.35 0.00 41.80 2.74
3401 3697 0.684535 TGAATTCACAGCCCTCGTCA 59.315 50.000 3.38 0.00 0.00 4.35
3455 3751 2.105649 GGATCACTTCTCATCCTTCCCC 59.894 54.545 0.00 0.00 36.39 4.81
3458 3754 4.751767 ACAGGATCACTTCTCATCCTTC 57.248 45.455 0.00 0.00 45.81 3.46
3482 3778 1.522668 CGACAAGTTTGCTGGGATGA 58.477 50.000 0.00 0.00 0.00 2.92
3483 3779 0.109597 GCGACAAGTTTGCTGGGATG 60.110 55.000 0.00 0.00 0.00 3.51
3501 3797 8.597227 GGACATTATTGTTTTATTTAAACCGGC 58.403 33.333 0.00 0.00 44.49 6.13
3547 3843 4.577283 GTCTGGGCACTGTTTAACTAACAA 59.423 41.667 0.00 0.00 45.69 2.83
3584 3888 8.836268 AACCGAACTAACAATATGTACAAAGA 57.164 30.769 0.00 0.00 0.00 2.52
3623 3927 4.217118 CAGGAAGACAATCTGGAAACTTGG 59.783 45.833 0.00 0.00 0.00 3.61
3663 3967 1.680735 AGAGATGCAGATCGACACCTC 59.319 52.381 4.63 4.63 33.34 3.85
3668 3972 3.316588 TGGAGTAAGAGATGCAGATCGAC 59.683 47.826 0.00 0.00 33.34 4.20
3669 3973 3.555966 TGGAGTAAGAGATGCAGATCGA 58.444 45.455 0.00 0.00 33.34 3.59
3685 3989 3.319122 GTCCAAGCAGACAAAAATGGAGT 59.681 43.478 0.00 0.00 37.62 3.85
3686 3990 3.571401 AGTCCAAGCAGACAAAAATGGAG 59.429 43.478 4.64 0.00 37.62 3.86
3694 4009 2.170397 TGAACAGAGTCCAAGCAGACAA 59.830 45.455 4.64 0.00 39.34 3.18
3724 4039 1.623311 GCTTTTTGCAAGGGTATGGGT 59.377 47.619 0.00 0.00 42.31 4.51
3725 4040 1.901833 AGCTTTTTGCAAGGGTATGGG 59.098 47.619 0.00 0.00 45.94 4.00
3759 4076 6.695713 GCCGCTTAATTCACCTAAATTAAAGG 59.304 38.462 5.42 5.42 39.40 3.11
3773 4090 2.683362 ACTTTGCCTAGCCGCTTAATTC 59.317 45.455 0.00 0.00 0.00 2.17
3774 4091 2.423538 CACTTTGCCTAGCCGCTTAATT 59.576 45.455 0.00 0.00 0.00 1.40
3775 4092 2.017049 CACTTTGCCTAGCCGCTTAAT 58.983 47.619 0.00 0.00 0.00 1.40
3776 4093 1.271163 ACACTTTGCCTAGCCGCTTAA 60.271 47.619 0.00 0.00 0.00 1.85
3777 4094 0.323629 ACACTTTGCCTAGCCGCTTA 59.676 50.000 0.00 0.00 0.00 3.09
3778 4095 0.323629 TACACTTTGCCTAGCCGCTT 59.676 50.000 0.00 0.00 0.00 4.68
3779 4096 0.323629 TTACACTTTGCCTAGCCGCT 59.676 50.000 0.00 0.00 0.00 5.52
3780 4097 1.161843 TTTACACTTTGCCTAGCCGC 58.838 50.000 0.00 0.00 0.00 6.53
3781 4098 2.812011 AGTTTTACACTTTGCCTAGCCG 59.188 45.455 0.00 0.00 27.32 5.52
3782 4099 3.818773 TCAGTTTTACACTTTGCCTAGCC 59.181 43.478 0.00 0.00 30.92 3.93
3783 4100 5.412904 AGATCAGTTTTACACTTTGCCTAGC 59.587 40.000 0.00 0.00 30.92 3.42
3784 4101 8.723942 ATAGATCAGTTTTACACTTTGCCTAG 57.276 34.615 0.00 0.00 30.92 3.02
3785 4102 8.318412 TGATAGATCAGTTTTACACTTTGCCTA 58.682 33.333 0.00 0.00 30.92 3.93
3786 4103 7.168219 TGATAGATCAGTTTTACACTTTGCCT 58.832 34.615 0.00 0.00 30.92 4.75
3787 4104 7.377766 TGATAGATCAGTTTTACACTTTGCC 57.622 36.000 0.00 0.00 30.92 4.52
3802 4119 2.333069 CAGGGGCCTTCTGATAGATCA 58.667 52.381 17.81 0.00 34.36 2.92
3803 4120 1.003003 GCAGGGGCCTTCTGATAGATC 59.997 57.143 24.09 7.18 34.36 2.75
3804 4121 1.063183 GCAGGGGCCTTCTGATAGAT 58.937 55.000 24.09 0.00 34.36 1.98
3805 4122 1.402896 CGCAGGGGCCTTCTGATAGA 61.403 60.000 24.09 0.00 36.38 1.98
3806 4123 1.070445 CGCAGGGGCCTTCTGATAG 59.930 63.158 24.09 13.50 36.38 2.08
3807 4124 1.686325 GACGCAGGGGCCTTCTGATA 61.686 60.000 24.09 0.00 36.38 2.15
3808 4125 3.011517 ACGCAGGGGCCTTCTGAT 61.012 61.111 24.09 12.22 36.38 2.90
3809 4126 3.706373 GACGCAGGGGCCTTCTGA 61.706 66.667 24.09 0.00 36.38 3.27
3826 4143 4.143333 ATCCAACCGAGTCGCCCG 62.143 66.667 7.12 0.00 0.00 6.13
3827 4144 2.202892 GATCCAACCGAGTCGCCC 60.203 66.667 7.12 0.00 0.00 6.13
3828 4145 2.202892 GGATCCAACCGAGTCGCC 60.203 66.667 6.95 0.00 0.00 5.54
3829 4146 0.672401 TTTGGATCCAACCGAGTCGC 60.672 55.000 27.04 0.00 35.46 5.19
3830 4147 1.076332 GTTTGGATCCAACCGAGTCG 58.924 55.000 27.04 5.29 35.46 4.18
3831 4148 1.450025 GGTTTGGATCCAACCGAGTC 58.550 55.000 27.04 12.24 35.46 3.36
3832 4149 0.037734 GGGTTTGGATCCAACCGAGT 59.962 55.000 27.04 0.00 35.46 4.18
3833 4150 0.328258 AGGGTTTGGATCCAACCGAG 59.672 55.000 27.04 0.00 35.46 4.63
3834 4151 1.557832 CTAGGGTTTGGATCCAACCGA 59.442 52.381 27.04 19.35 35.46 4.69
3835 4152 1.280998 ACTAGGGTTTGGATCCAACCG 59.719 52.381 27.04 18.14 35.46 4.44
3836 4153 2.679930 CGACTAGGGTTTGGATCCAACC 60.680 54.545 27.04 26.38 35.46 3.77
3837 4154 2.629051 CGACTAGGGTTTGGATCCAAC 58.371 52.381 27.04 19.90 35.46 3.77
3838 4155 1.065709 GCGACTAGGGTTTGGATCCAA 60.066 52.381 23.63 23.63 0.00 3.53
3839 4156 0.539986 GCGACTAGGGTTTGGATCCA 59.460 55.000 11.44 11.44 0.00 3.41
3840 4157 0.179054 GGCGACTAGGGTTTGGATCC 60.179 60.000 4.20 4.20 0.00 3.36
3841 4158 0.529992 CGGCGACTAGGGTTTGGATC 60.530 60.000 0.00 0.00 0.00 3.36
3842 4159 1.520666 CGGCGACTAGGGTTTGGAT 59.479 57.895 0.00 0.00 0.00 3.41
3843 4160 2.652095 CCGGCGACTAGGGTTTGGA 61.652 63.158 9.30 0.00 0.00 3.53
3844 4161 2.125269 CCGGCGACTAGGGTTTGG 60.125 66.667 9.30 0.00 0.00 3.28
3845 4162 2.125269 CCCGGCGACTAGGGTTTG 60.125 66.667 9.30 0.00 42.67 2.93
3846 4163 3.396570 CCCCGGCGACTAGGGTTT 61.397 66.667 9.30 0.00 46.17 3.27
3859 4176 3.866582 GAGGAGATGGTGCCCCCG 61.867 72.222 0.00 0.00 35.15 5.73
3860 4177 2.367512 AGAGGAGATGGTGCCCCC 60.368 66.667 0.00 0.00 0.00 5.40
3861 4178 1.383803 AGAGAGGAGATGGTGCCCC 60.384 63.158 0.00 0.00 0.00 5.80
3862 4179 1.406860 GGAGAGAGGAGATGGTGCCC 61.407 65.000 0.00 0.00 0.00 5.36
3863 4180 1.406860 GGGAGAGAGGAGATGGTGCC 61.407 65.000 0.00 0.00 0.00 5.01
3864 4181 0.398381 AGGGAGAGAGGAGATGGTGC 60.398 60.000 0.00 0.00 0.00 5.01
3865 4182 2.038659 GAAGGGAGAGAGGAGATGGTG 58.961 57.143 0.00 0.00 0.00 4.17
3866 4183 1.062505 GGAAGGGAGAGAGGAGATGGT 60.063 57.143 0.00 0.00 0.00 3.55
3867 4184 1.220236 AGGAAGGGAGAGAGGAGATGG 59.780 57.143 0.00 0.00 0.00 3.51
3868 4185 2.699846 CAAGGAAGGGAGAGAGGAGATG 59.300 54.545 0.00 0.00 0.00 2.90
3869 4186 2.959171 GCAAGGAAGGGAGAGAGGAGAT 60.959 54.545 0.00 0.00 0.00 2.75
3870 4187 1.621072 GCAAGGAAGGGAGAGAGGAGA 60.621 57.143 0.00 0.00 0.00 3.71
3871 4188 0.829990 GCAAGGAAGGGAGAGAGGAG 59.170 60.000 0.00 0.00 0.00 3.69
3872 4189 0.972983 CGCAAGGAAGGGAGAGAGGA 60.973 60.000 0.00 0.00 0.00 3.71
3873 4190 1.261238 ACGCAAGGAAGGGAGAGAGG 61.261 60.000 0.00 0.00 46.39 3.69
3874 4191 0.174617 GACGCAAGGAAGGGAGAGAG 59.825 60.000 0.00 0.00 46.39 3.20
3875 4192 1.595993 CGACGCAAGGAAGGGAGAGA 61.596 60.000 0.00 0.00 46.39 3.10
3876 4193 1.153745 CGACGCAAGGAAGGGAGAG 60.154 63.158 0.00 0.00 46.39 3.20
3877 4194 2.970639 CGACGCAAGGAAGGGAGA 59.029 61.111 0.00 0.00 46.39 3.71
3878 4195 2.815647 GCGACGCAAGGAAGGGAG 60.816 66.667 16.42 0.00 46.39 4.30
3879 4196 4.388499 GGCGACGCAAGGAAGGGA 62.388 66.667 23.09 0.00 46.39 4.20
3936 4253 2.621055 CGATGTAGGGAAGTGAGGAGAG 59.379 54.545 0.00 0.00 0.00 3.20
3937 4254 2.656002 CGATGTAGGGAAGTGAGGAGA 58.344 52.381 0.00 0.00 0.00 3.71
3941 4258 1.137086 CCACCGATGTAGGGAAGTGAG 59.863 57.143 0.00 0.00 35.02 3.51
3944 4261 0.252558 ACCCACCGATGTAGGGAAGT 60.253 55.000 3.32 0.00 45.80 3.01
3951 4268 2.666207 GCACCACCCACCGATGTA 59.334 61.111 0.00 0.00 0.00 2.29
3952 4269 4.697756 CGCACCACCCACCGATGT 62.698 66.667 0.00 0.00 0.00 3.06
3977 4294 4.530857 GATCCCTCCACGCACCGG 62.531 72.222 0.00 0.00 0.00 5.28
3978 4295 3.770040 TGATCCCTCCACGCACCG 61.770 66.667 0.00 0.00 0.00 4.94
3981 4298 2.184020 CTTGGTGATCCCTCCACGCA 62.184 60.000 1.65 0.00 35.84 5.24
3982 4299 1.450312 CTTGGTGATCCCTCCACGC 60.450 63.158 1.65 0.00 35.84 5.34
3992 4309 1.987807 CTGGCCCGGATCTTGGTGAT 61.988 60.000 0.73 0.00 38.27 3.06
3995 4312 3.411517 CCTGGCCCGGATCTTGGT 61.412 66.667 7.60 0.00 0.00 3.67
3996 4313 4.195334 CCCTGGCCCGGATCTTGG 62.195 72.222 16.02 0.00 0.00 3.61
4060 4377 4.899239 GAGATCCGCCGCCCTGTG 62.899 72.222 0.00 0.00 0.00 3.66
4062 4379 3.873026 GATGAGATCCGCCGCCCTG 62.873 68.421 0.00 0.00 0.00 4.45
4063 4380 3.620785 GATGAGATCCGCCGCCCT 61.621 66.667 0.00 0.00 0.00 5.19
4071 4388 2.747446 GAGGACTAGAGCGATGAGATCC 59.253 54.545 0.00 0.00 35.47 3.36
4081 4398 3.295973 AGTTCTCCATGAGGACTAGAGC 58.704 50.000 3.17 0.00 45.71 4.09
4095 4412 1.268283 CCCCAGGACCAGAGTTCTCC 61.268 65.000 0.00 0.00 24.46 3.71
4098 4415 2.671682 GCCCCAGGACCAGAGTTC 59.328 66.667 0.00 0.00 0.00 3.01
4118 4435 2.358619 GCCACACCTAATGGGCCA 59.641 61.111 9.61 9.61 38.21 5.36
4124 4441 2.125269 GTCGCCGCCACACCTAAT 60.125 61.111 0.00 0.00 0.00 1.73
4125 4442 4.728102 CGTCGCCGCCACACCTAA 62.728 66.667 0.00 0.00 0.00 2.69
4149 4467 3.141488 CCCGCGAGCACCTCTAGT 61.141 66.667 8.23 0.00 0.00 2.57
4179 4497 2.409870 CCCATGCGGTCAAGAAGCC 61.410 63.158 0.00 0.00 0.00 4.35
4183 4501 4.776322 CGGCCCATGCGGTCAAGA 62.776 66.667 0.00 0.00 35.08 3.02
4199 4517 2.047274 ATCCACCGGCAACTCACG 60.047 61.111 0.00 0.00 0.00 4.35
4202 4520 1.153349 GGAGATCCACCGGCAACTC 60.153 63.158 0.00 3.71 35.64 3.01
4206 4524 1.758514 GAGAGGAGATCCACCGGCA 60.759 63.158 0.00 0.00 38.89 5.69
4208 4526 2.196925 CGGAGAGGAGATCCACCGG 61.197 68.421 17.97 0.00 41.74 5.28
4223 4541 3.219928 GAGAGAGGATGCGGCGGA 61.220 66.667 9.78 6.17 0.00 5.54
4226 4544 4.292178 CGGGAGAGAGGATGCGGC 62.292 72.222 0.00 0.00 0.00 6.53
4228 4546 3.222855 AGCGGGAGAGAGGATGCG 61.223 66.667 0.00 0.00 0.00 4.73
4229 4547 2.420890 CAGCGGGAGAGAGGATGC 59.579 66.667 0.00 0.00 0.00 3.91
4230 4548 2.420890 GCAGCGGGAGAGAGGATG 59.579 66.667 0.00 0.00 0.00 3.51
4231 4549 2.042537 TGCAGCGGGAGAGAGGAT 60.043 61.111 0.00 0.00 0.00 3.24
4232 4550 3.071206 GTGCAGCGGGAGAGAGGA 61.071 66.667 0.00 0.00 0.00 3.71
4250 4568 2.743928 GAGACCGCAAGCCACCAG 60.744 66.667 0.00 0.00 0.00 4.00
4274 4592 4.308458 TCCAACACACCGAGCCCG 62.308 66.667 0.00 0.00 0.00 6.13
4275 4593 2.358737 CTCCAACACACCGAGCCC 60.359 66.667 0.00 0.00 0.00 5.19
4277 4595 2.358737 CCCTCCAACACACCGAGC 60.359 66.667 0.00 0.00 0.00 5.03
4291 4609 2.041265 CACCTCTACCAGCCCCCT 59.959 66.667 0.00 0.00 0.00 4.79
4292 4610 3.090532 CCACCTCTACCAGCCCCC 61.091 72.222 0.00 0.00 0.00 5.40
4310 4628 3.494398 CCAGAGTTTCCTTCAGTCCGAAA 60.494 47.826 0.00 0.00 31.71 3.46
4318 4636 1.004745 GGCCATCCAGAGTTTCCTTCA 59.995 52.381 0.00 0.00 0.00 3.02
4319 4637 1.683319 GGGCCATCCAGAGTTTCCTTC 60.683 57.143 4.39 0.00 35.00 3.46
4320 4638 0.332972 GGGCCATCCAGAGTTTCCTT 59.667 55.000 4.39 0.00 35.00 3.36
4323 4641 2.115291 GCGGGCCATCCAGAGTTTC 61.115 63.158 4.39 0.00 34.36 2.78
4329 4647 4.899239 GACGAGCGGGCCATCCAG 62.899 72.222 4.39 0.00 34.36 3.86
4349 4667 2.047655 TTGGTCGTCGCCACCATC 60.048 61.111 6.63 0.00 43.66 3.51
4351 4669 4.308458 CCTTGGTCGTCGCCACCA 62.308 66.667 7.74 4.93 42.48 4.17
4352 4670 4.309950 ACCTTGGTCGTCGCCACC 62.310 66.667 7.74 2.32 38.42 4.61
4363 4681 1.529865 GAAGGAAAACGACGACCTTGG 59.470 52.381 18.50 0.00 41.90 3.61
4364 4682 2.480845 AGAAGGAAAACGACGACCTTG 58.519 47.619 18.50 0.00 41.90 3.61
4370 4688 1.069906 CCTGCAAGAAGGAAAACGACG 60.070 52.381 0.00 0.00 40.02 5.12
4372 4690 0.951558 GCCTGCAAGAAGGAAAACGA 59.048 50.000 0.00 0.00 40.02 3.85
4375 4693 1.659794 GCGCCTGCAAGAAGGAAAA 59.340 52.632 0.00 0.00 40.02 2.29
4377 4695 2.672996 GGCGCCTGCAAGAAGGAA 60.673 61.111 22.15 0.00 45.35 3.36
4382 4700 4.081185 TCGATGGCGCCTGCAAGA 62.081 61.111 29.70 16.44 45.35 3.02
4383 4701 3.570638 CTCGATGGCGCCTGCAAG 61.571 66.667 29.70 15.93 45.35 4.01
4395 4713 2.444895 GAGTGGAGGGGCCTCGAT 60.445 66.667 0.84 0.00 43.59 3.59
4446 4764 2.107141 CGCCCAATCCGAGGAGAC 59.893 66.667 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.