Multiple sequence alignment - TraesCS7D01G449900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G449900 | chr7D | 100.000 | 7060 | 0 | 0 | 1 | 7060 | 568955531 | 568948472 | 0.000000e+00 | 13038.0 |
1 | TraesCS7D01G449900 | chr7D | 90.693 | 462 | 31 | 7 | 2214 | 2665 | 548771460 | 548771919 | 7.830000e-169 | 604.0 |
2 | TraesCS7D01G449900 | chr7B | 93.610 | 2817 | 113 | 35 | 3807 | 6585 | 625298893 | 625296106 | 0.000000e+00 | 4143.0 |
3 | TraesCS7D01G449900 | chr7B | 90.143 | 2313 | 110 | 43 | 2 | 2260 | 625302660 | 625300412 | 0.000000e+00 | 2900.0 |
4 | TraesCS7D01G449900 | chr7B | 91.039 | 1473 | 86 | 26 | 2254 | 3702 | 625300386 | 625298936 | 0.000000e+00 | 1947.0 |
5 | TraesCS7D01G449900 | chr7B | 94.196 | 224 | 11 | 2 | 2214 | 2437 | 592343187 | 592343408 | 2.440000e-89 | 340.0 |
6 | TraesCS7D01G449900 | chr7B | 80.399 | 301 | 26 | 14 | 6634 | 6914 | 625296104 | 625295817 | 1.550000e-46 | 198.0 |
7 | TraesCS7D01G449900 | chr7A | 91.773 | 3063 | 124 | 57 | 3744 | 6756 | 657718776 | 657715792 | 0.000000e+00 | 4143.0 |
8 | TraesCS7D01G449900 | chr7A | 89.071 | 2324 | 128 | 52 | 7 | 2259 | 657722572 | 657720304 | 0.000000e+00 | 2769.0 |
9 | TraesCS7D01G449900 | chr7A | 96.342 | 1449 | 47 | 4 | 2258 | 3703 | 657720222 | 657718777 | 0.000000e+00 | 2377.0 |
10 | TraesCS7D01G449900 | chr7A | 92.411 | 224 | 11 | 2 | 2214 | 2437 | 632546248 | 632546465 | 1.480000e-81 | 315.0 |
11 | TraesCS7D01G449900 | chr7A | 91.429 | 210 | 13 | 3 | 2463 | 2668 | 632546463 | 632546671 | 4.170000e-72 | 283.0 |
12 | TraesCS7D01G449900 | chr7A | 80.068 | 296 | 33 | 15 | 6789 | 7060 | 657715795 | 657715502 | 5.590000e-46 | 196.0 |
13 | TraesCS7D01G449900 | chr4A | 93.103 | 754 | 47 | 2 | 3807 | 4560 | 639045925 | 639046673 | 0.000000e+00 | 1099.0 |
14 | TraesCS7D01G449900 | chr4A | 88.158 | 228 | 22 | 4 | 3476 | 3702 | 639045659 | 639045882 | 4.200000e-67 | 267.0 |
15 | TraesCS7D01G449900 | chr6D | 75.800 | 719 | 134 | 32 | 1996 | 2690 | 91518042 | 91518744 | 1.900000e-85 | 327.0 |
16 | TraesCS7D01G449900 | chr6D | 79.581 | 382 | 66 | 9 | 3042 | 3422 | 91519120 | 91519490 | 5.430000e-66 | 263.0 |
17 | TraesCS7D01G449900 | chr6B | 75.419 | 716 | 140 | 30 | 1996 | 2690 | 175339004 | 175339704 | 1.480000e-81 | 315.0 |
18 | TraesCS7D01G449900 | chr6B | 79.790 | 381 | 67 | 8 | 3042 | 3422 | 175340080 | 175340450 | 1.170000e-67 | 268.0 |
19 | TraesCS7D01G449900 | chr6B | 97.143 | 35 | 1 | 0 | 274 | 308 | 175337544 | 175337578 | 7.650000e-05 | 60.2 |
20 | TraesCS7D01G449900 | chr6A | 79.843 | 382 | 65 | 9 | 3042 | 3422 | 109985282 | 109985652 | 1.170000e-67 | 268.0 |
21 | TraesCS7D01G449900 | chr6A | 85.938 | 64 | 6 | 3 | 245 | 308 | 109982715 | 109982775 | 1.640000e-06 | 65.8 |
22 | TraesCS7D01G449900 | chr5B | 81.407 | 199 | 37 | 0 | 5563 | 5761 | 44781737 | 44781935 | 5.670000e-36 | 163.0 |
23 | TraesCS7D01G449900 | chr5A | 81.407 | 199 | 37 | 0 | 5563 | 5761 | 35632169 | 35632367 | 5.670000e-36 | 163.0 |
24 | TraesCS7D01G449900 | chr5A | 94.286 | 35 | 2 | 0 | 3708 | 3742 | 522609295 | 522609261 | 4.000000e-03 | 54.7 |
25 | TraesCS7D01G449900 | chr5D | 80.905 | 199 | 38 | 0 | 5563 | 5761 | 44912591 | 44912789 | 2.640000e-34 | 158.0 |
26 | TraesCS7D01G449900 | chr2D | 84.848 | 99 | 13 | 2 | 5663 | 5760 | 624367328 | 624367425 | 1.620000e-16 | 99.0 |
27 | TraesCS7D01G449900 | chr2B | 84.848 | 99 | 13 | 2 | 5663 | 5760 | 766566852 | 766566949 | 1.620000e-16 | 99.0 |
28 | TraesCS7D01G449900 | chr2A | 84.848 | 99 | 13 | 2 | 5663 | 5760 | 755774288 | 755774385 | 1.620000e-16 | 99.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G449900 | chr7D | 568948472 | 568955531 | 7059 | True | 13038.00 | 13038 | 100.000000 | 1 | 7060 | 1 | chr7D.!!$R1 | 7059 |
1 | TraesCS7D01G449900 | chr7B | 625295817 | 625302660 | 6843 | True | 2297.00 | 4143 | 88.797750 | 2 | 6914 | 4 | chr7B.!!$R1 | 6912 |
2 | TraesCS7D01G449900 | chr7A | 657715502 | 657722572 | 7070 | True | 2371.25 | 4143 | 89.313500 | 7 | 7060 | 4 | chr7A.!!$R1 | 7053 |
3 | TraesCS7D01G449900 | chr4A | 639045659 | 639046673 | 1014 | False | 683.00 | 1099 | 90.630500 | 3476 | 4560 | 2 | chr4A.!!$F1 | 1084 |
4 | TraesCS7D01G449900 | chr6D | 91518042 | 91519490 | 1448 | False | 295.00 | 327 | 77.690500 | 1996 | 3422 | 2 | chr6D.!!$F1 | 1426 |
5 | TraesCS7D01G449900 | chr6B | 175337544 | 175340450 | 2906 | False | 214.40 | 315 | 84.117333 | 274 | 3422 | 3 | chr6B.!!$F1 | 3148 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
407 | 490 | 0.179018 | AAGCAAAGCCAGTCCGAAGT | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 | F |
1326 | 1577 | 0.392461 | TAGGGGTTGCTGCAATCGAC | 60.392 | 55.000 | 19.11 | 13.85 | 0.00 | 4.20 | F |
1703 | 2027 | 1.311859 | CTGACAAGCCTTCTGCACAA | 58.688 | 50.000 | 0.00 | 0.00 | 44.83 | 3.33 | F |
2690 | 3237 | 1.542472 | TCACATCTTTCGCGGTGAGTA | 59.458 | 47.619 | 6.13 | 0.00 | 35.51 | 2.59 | F |
3715 | 4358 | 1.067212 | CCATGTACTCCCTCTGTACGC | 59.933 | 57.143 | 0.00 | 0.00 | 42.09 | 4.42 | F |
4464 | 5109 | 0.179034 | CTATCCAAGGCCAGGCTCAC | 60.179 | 60.000 | 12.43 | 0.00 | 0.00 | 3.51 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1857 | 2182 | 0.538287 | AAGTTCCTTGCACTGGAGGC | 60.538 | 55.000 | 7.57 | 5.85 | 34.76 | 4.70 | R |
3239 | 3876 | 3.006217 | AGCATTCAGAAAGGAAAAGCACC | 59.994 | 43.478 | 0.00 | 0.00 | 35.56 | 5.01 | R |
3700 | 4343 | 2.803030 | AAGAGCGTACAGAGGGAGTA | 57.197 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 | R |
3886 | 4531 | 0.258774 | AAAGTGACACCCTTGGCTGT | 59.741 | 50.000 | 0.84 | 0.00 | 0.00 | 4.40 | R |
4899 | 5544 | 0.253044 | ATAGCTGTTCCATGTGCGGT | 59.747 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 | R |
6063 | 6747 | 0.036010 | CCTCGCCTCAGAACACCATT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
42 | 43 | 3.498397 | GGAAACGTTCACATCACTCACAT | 59.502 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
48 | 49 | 3.531934 | TCACATCACTCACATAGGCAG | 57.468 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
56 | 57 | 4.489771 | ACATAGGCAGGCGGGCAC | 62.490 | 66.667 | 14.36 | 0.00 | 46.44 | 5.01 |
64 | 65 | 3.387091 | AGGCGGGCACATCGTACA | 61.387 | 61.111 | 3.78 | 0.00 | 0.00 | 2.90 |
84 | 85 | 1.336887 | ACGTACATGCAGAGAACGCTT | 60.337 | 47.619 | 11.96 | 0.00 | 37.07 | 4.68 |
85 | 86 | 2.094906 | ACGTACATGCAGAGAACGCTTA | 60.095 | 45.455 | 11.96 | 0.00 | 37.07 | 3.09 |
134 | 135 | 4.819761 | GCATGAGCGGACGCCTCA | 62.820 | 66.667 | 13.63 | 15.48 | 43.17 | 3.86 |
135 | 136 | 2.107750 | CATGAGCGGACGCCTCAT | 59.892 | 61.111 | 13.63 | 16.88 | 43.17 | 2.90 |
136 | 137 | 1.953138 | CATGAGCGGACGCCTCATC | 60.953 | 63.158 | 20.49 | 11.10 | 43.17 | 2.92 |
152 | 168 | 5.008019 | CGCCTCATCACACTGCTATAAAAAT | 59.992 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
153 | 169 | 6.202762 | CGCCTCATCACACTGCTATAAAAATA | 59.797 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
154 | 170 | 7.355778 | GCCTCATCACACTGCTATAAAAATAC | 58.644 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
155 | 171 | 7.012327 | GCCTCATCACACTGCTATAAAAATACA | 59.988 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
156 | 172 | 8.554528 | CCTCATCACACTGCTATAAAAATACAG | 58.445 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
256 | 299 | 6.431543 | ACACGATTTTACAAGAGAGAGAGAGA | 59.568 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
262 | 305 | 0.261696 | AAGAGAGAGAGAGAGGGGCC | 59.738 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
264 | 307 | 2.520741 | GAGAGAGAGAGGGGCCGG | 60.521 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
311 | 354 | 4.330944 | GGTTAAAACCCCAAGAACAAGG | 57.669 | 45.455 | 0.02 | 0.00 | 43.43 | 3.61 |
400 | 483 | 1.413812 | CCCAAGAAAAGCAAAGCCAGT | 59.586 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
405 | 488 | 1.336755 | GAAAAGCAAAGCCAGTCCGAA | 59.663 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
407 | 490 | 0.179018 | AAGCAAAGCCAGTCCGAAGT | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
588 | 736 | 1.746220 | CTCCTCGGATCGACTGTTTCT | 59.254 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
599 | 747 | 3.302347 | CTGTTTCTCGGCTCCGGCT | 62.302 | 63.158 | 8.59 | 0.00 | 40.25 | 5.52 |
714 | 953 | 0.551624 | TTTCCCGGGGAGGAAGGATT | 60.552 | 55.000 | 23.50 | 0.00 | 46.44 | 3.01 |
747 | 986 | 4.021925 | GCACGGCAGAAGGGGTCT | 62.022 | 66.667 | 0.00 | 0.00 | 36.88 | 3.85 |
748 | 987 | 2.656069 | GCACGGCAGAAGGGGTCTA | 61.656 | 63.158 | 0.00 | 0.00 | 33.56 | 2.59 |
752 | 991 | 1.677637 | CGGCAGAAGGGGTCTACTCC | 61.678 | 65.000 | 0.00 | 0.00 | 33.56 | 3.85 |
753 | 992 | 1.338890 | GGCAGAAGGGGTCTACTCCC | 61.339 | 65.000 | 0.00 | 0.00 | 46.31 | 4.30 |
763 | 1002 | 0.398806 | GTCTACTCCCCTCCCTTCCC | 60.399 | 65.000 | 0.00 | 0.00 | 0.00 | 3.97 |
764 | 1003 | 1.457831 | CTACTCCCCTCCCTTCCCG | 60.458 | 68.421 | 0.00 | 0.00 | 0.00 | 5.14 |
778 | 1017 | 0.842905 | TTCCCGTCCCTTCCATTCCA | 60.843 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
904 | 1148 | 3.157949 | CTCCGCTCTCCCCTTCCC | 61.158 | 72.222 | 0.00 | 0.00 | 0.00 | 3.97 |
905 | 1149 | 3.684628 | TCCGCTCTCCCCTTCCCT | 61.685 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
906 | 1150 | 2.689034 | CCGCTCTCCCCTTCCCTT | 60.689 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
907 | 1151 | 2.736826 | CCGCTCTCCCCTTCCCTTC | 61.737 | 68.421 | 0.00 | 0.00 | 0.00 | 3.46 |
1179 | 1426 | 3.006967 | AGTTTGTGGGACTAGCAGTACTG | 59.993 | 47.826 | 18.93 | 18.93 | 0.00 | 2.74 |
1226 | 1477 | 0.811915 | TTTCCTCGGAAGCTCTCTCG | 59.188 | 55.000 | 0.00 | 0.00 | 35.38 | 4.04 |
1326 | 1577 | 0.392461 | TAGGGGTTGCTGCAATCGAC | 60.392 | 55.000 | 19.11 | 13.85 | 0.00 | 4.20 |
1394 | 1645 | 4.624024 | TGCGAAATTTCAGTTCGGTACTAG | 59.376 | 41.667 | 17.99 | 0.00 | 46.17 | 2.57 |
1396 | 1647 | 5.801947 | GCGAAATTTCAGTTCGGTACTAGTA | 59.198 | 40.000 | 17.99 | 0.00 | 46.17 | 1.82 |
1397 | 1648 | 6.308766 | GCGAAATTTCAGTTCGGTACTAGTAA | 59.691 | 38.462 | 17.99 | 0.00 | 46.17 | 2.24 |
1398 | 1649 | 7.148755 | GCGAAATTTCAGTTCGGTACTAGTAAA | 60.149 | 37.037 | 17.99 | 0.00 | 46.17 | 2.01 |
1399 | 1650 | 8.866956 | CGAAATTTCAGTTCGGTACTAGTAAAT | 58.133 | 33.333 | 17.99 | 0.00 | 43.19 | 1.40 |
1471 | 1723 | 7.917505 | CCAATTTCCTGCTCTATGTGTTAATTC | 59.082 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
1613 | 1926 | 4.201950 | CGCCCACCTTCTTGAATAATCTTG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
1643 | 1959 | 7.281774 | CCAGCATATGAATTCAGAGTTGTTACT | 59.718 | 37.037 | 14.54 | 0.00 | 37.31 | 2.24 |
1645 | 1961 | 7.826252 | AGCATATGAATTCAGAGTTGTTACTGT | 59.174 | 33.333 | 14.54 | 0.00 | 33.84 | 3.55 |
1647 | 1963 | 8.607459 | CATATGAATTCAGAGTTGTTACTGTCC | 58.393 | 37.037 | 14.54 | 0.00 | 33.84 | 4.02 |
1648 | 1964 | 5.305585 | TGAATTCAGAGTTGTTACTGTCCC | 58.694 | 41.667 | 3.38 | 0.00 | 33.84 | 4.46 |
1649 | 1965 | 5.071788 | TGAATTCAGAGTTGTTACTGTCCCT | 59.928 | 40.000 | 3.38 | 0.00 | 33.84 | 4.20 |
1683 | 2000 | 8.745837 | GCCATCATTATCTGTTAAAAATCAACG | 58.254 | 33.333 | 0.00 | 0.00 | 0.00 | 4.10 |
1700 | 2024 | 4.069869 | GCTGACAAGCCTTCTGCA | 57.930 | 55.556 | 0.00 | 0.00 | 44.22 | 4.41 |
1703 | 2027 | 1.311859 | CTGACAAGCCTTCTGCACAA | 58.688 | 50.000 | 0.00 | 0.00 | 44.83 | 3.33 |
1753 | 2078 | 1.879380 | CACAAGTGCCTGAATTCGGAA | 59.121 | 47.619 | 16.17 | 4.42 | 0.00 | 4.30 |
1856 | 2181 | 2.036346 | GAGCAGGTTGGTGCAAAATTCT | 59.964 | 45.455 | 0.00 | 0.00 | 46.60 | 2.40 |
1857 | 2182 | 2.137523 | GCAGGTTGGTGCAAAATTCTG | 58.862 | 47.619 | 0.00 | 0.58 | 43.41 | 3.02 |
1902 | 2227 | 4.007581 | TGATCCTGAATCCTAACCTCCA | 57.992 | 45.455 | 0.00 | 0.00 | 33.01 | 3.86 |
2149 | 2602 | 5.878406 | ACCAGCTAAGTAATATCACTGCT | 57.122 | 39.130 | 0.00 | 0.00 | 30.26 | 4.24 |
2178 | 2631 | 7.462109 | TCTTTTCGTTTGATCATTGGTTTTG | 57.538 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2690 | 3237 | 1.542472 | TCACATCTTTCGCGGTGAGTA | 59.458 | 47.619 | 6.13 | 0.00 | 35.51 | 2.59 |
2813 | 3364 | 8.298140 | TCTTAAGAGTTAAGAGAACGAAGAAGG | 58.702 | 37.037 | 0.00 | 0.00 | 44.85 | 3.46 |
3006 | 3591 | 4.460263 | TGTCTACTCCAGCACACAAATTT | 58.540 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
3040 | 3677 | 8.093927 | TCAAATTTGTGTATCCCCTTGAATTTC | 58.906 | 33.333 | 17.47 | 0.00 | 0.00 | 2.17 |
3250 | 3887 | 3.971245 | TGTTTGTTTGGTGCTTTTCCT | 57.029 | 38.095 | 0.00 | 0.00 | 0.00 | 3.36 |
3645 | 4288 | 8.441572 | TGTAAAGGTATATTTATGGGCTAGCAA | 58.558 | 33.333 | 18.24 | 4.19 | 0.00 | 3.91 |
3648 | 4291 | 7.944729 | AGGTATATTTATGGGCTAGCAATTG | 57.055 | 36.000 | 18.24 | 0.00 | 0.00 | 2.32 |
3700 | 4343 | 2.264005 | TCGCCTGTTGTTTACCATGT | 57.736 | 45.000 | 0.00 | 0.00 | 0.00 | 3.21 |
3703 | 4346 | 3.071479 | CGCCTGTTGTTTACCATGTACT | 58.929 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
3704 | 4347 | 3.124636 | CGCCTGTTGTTTACCATGTACTC | 59.875 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
3705 | 4348 | 3.439129 | GCCTGTTGTTTACCATGTACTCC | 59.561 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
3706 | 4349 | 4.007659 | CCTGTTGTTTACCATGTACTCCC | 58.992 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
3707 | 4350 | 4.263331 | CCTGTTGTTTACCATGTACTCCCT | 60.263 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
3708 | 4351 | 4.901868 | TGTTGTTTACCATGTACTCCCTC | 58.098 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
3709 | 4352 | 4.595781 | TGTTGTTTACCATGTACTCCCTCT | 59.404 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
3710 | 4353 | 4.819105 | TGTTTACCATGTACTCCCTCTG | 57.181 | 45.455 | 0.00 | 0.00 | 0.00 | 3.35 |
3711 | 4354 | 4.164981 | TGTTTACCATGTACTCCCTCTGT | 58.835 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
3712 | 4355 | 5.335261 | TGTTTACCATGTACTCCCTCTGTA | 58.665 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3713 | 4356 | 5.186409 | TGTTTACCATGTACTCCCTCTGTAC | 59.814 | 44.000 | 0.00 | 0.00 | 40.27 | 2.90 |
3714 | 4357 | 2.376109 | ACCATGTACTCCCTCTGTACG | 58.624 | 52.381 | 0.00 | 0.00 | 42.09 | 3.67 |
3715 | 4358 | 1.067212 | CCATGTACTCCCTCTGTACGC | 59.933 | 57.143 | 0.00 | 0.00 | 42.09 | 4.42 |
3716 | 4359 | 2.025155 | CATGTACTCCCTCTGTACGCT | 58.975 | 52.381 | 0.00 | 0.00 | 42.09 | 5.07 |
3717 | 4360 | 1.747709 | TGTACTCCCTCTGTACGCTC | 58.252 | 55.000 | 0.00 | 0.00 | 42.09 | 5.03 |
3718 | 4361 | 1.281287 | TGTACTCCCTCTGTACGCTCT | 59.719 | 52.381 | 0.00 | 0.00 | 42.09 | 4.09 |
3719 | 4362 | 2.290768 | TGTACTCCCTCTGTACGCTCTT | 60.291 | 50.000 | 0.00 | 0.00 | 42.09 | 2.85 |
3720 | 4363 | 2.803030 | ACTCCCTCTGTACGCTCTTA | 57.197 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3721 | 4364 | 3.300239 | ACTCCCTCTGTACGCTCTTAT | 57.700 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
3722 | 4365 | 4.434545 | ACTCCCTCTGTACGCTCTTATA | 57.565 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
3723 | 4366 | 4.391155 | ACTCCCTCTGTACGCTCTTATAG | 58.609 | 47.826 | 0.00 | 0.00 | 0.00 | 1.31 |
3724 | 4367 | 4.141436 | ACTCCCTCTGTACGCTCTTATAGT | 60.141 | 45.833 | 0.00 | 0.00 | 0.00 | 2.12 |
3725 | 4368 | 4.789807 | TCCCTCTGTACGCTCTTATAGTT | 58.210 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
3726 | 4369 | 4.820716 | TCCCTCTGTACGCTCTTATAGTTC | 59.179 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
3727 | 4370 | 4.822896 | CCCTCTGTACGCTCTTATAGTTCT | 59.177 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
3728 | 4371 | 5.299782 | CCCTCTGTACGCTCTTATAGTTCTT | 59.700 | 44.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3729 | 4372 | 6.183360 | CCCTCTGTACGCTCTTATAGTTCTTT | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 2.52 |
3730 | 4373 | 7.013083 | CCCTCTGTACGCTCTTATAGTTCTTTA | 59.987 | 40.741 | 0.00 | 0.00 | 0.00 | 1.85 |
3731 | 4374 | 7.856894 | CCTCTGTACGCTCTTATAGTTCTTTAC | 59.143 | 40.741 | 0.00 | 0.00 | 0.00 | 2.01 |
3732 | 4375 | 7.404985 | TCTGTACGCTCTTATAGTTCTTTACG | 58.595 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
3733 | 4376 | 6.489675 | TGTACGCTCTTATAGTTCTTTACGG | 58.510 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3734 | 4377 | 5.824904 | ACGCTCTTATAGTTCTTTACGGA | 57.175 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
3735 | 4378 | 5.819059 | ACGCTCTTATAGTTCTTTACGGAG | 58.181 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
3736 | 4379 | 5.213675 | CGCTCTTATAGTTCTTTACGGAGG | 58.786 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3737 | 4380 | 5.530712 | GCTCTTATAGTTCTTTACGGAGGG | 58.469 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3738 | 4381 | 5.301298 | GCTCTTATAGTTCTTTACGGAGGGA | 59.699 | 44.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3739 | 4382 | 6.515365 | GCTCTTATAGTTCTTTACGGAGGGAG | 60.515 | 46.154 | 0.00 | 0.00 | 0.00 | 4.30 |
3740 | 4383 | 6.430007 | TCTTATAGTTCTTTACGGAGGGAGT | 58.570 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3741 | 4384 | 7.577303 | TCTTATAGTTCTTTACGGAGGGAGTA | 58.423 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
3742 | 4385 | 8.223330 | TCTTATAGTTCTTTACGGAGGGAGTAT | 58.777 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
3771 | 4416 | 7.487829 | TGCAAAGTTTTTGTTAGACAAGATGAC | 59.512 | 33.333 | 3.77 | 0.00 | 39.53 | 3.06 |
3793 | 4438 | 7.382110 | TGACTTCCTATAGATATTGCTTGCTC | 58.618 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
3800 | 4445 | 8.934825 | CCTATAGATATTGCTTGCTCTTTCTTC | 58.065 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
3886 | 4531 | 3.168292 | TGAATCAACTGCTGGAGAGAGA | 58.832 | 45.455 | 2.24 | 0.00 | 0.00 | 3.10 |
4090 | 4735 | 8.979574 | GTATGCTTTCAGTATGGAGTGTTATAC | 58.020 | 37.037 | 0.00 | 0.00 | 36.16 | 1.47 |
4122 | 4767 | 4.771054 | TCTCTTTCTGTAGGTGGTAAGGAC | 59.229 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
4173 | 4818 | 1.440145 | GAGATAGCGCAAACCCTGGC | 61.440 | 60.000 | 11.47 | 0.00 | 0.00 | 4.85 |
4242 | 4887 | 2.034879 | AAGGCTGGATGCGTCGTTG | 61.035 | 57.895 | 0.00 | 0.00 | 44.05 | 4.10 |
4311 | 4956 | 2.224867 | CCAGGACCCAACAAAGATGTCT | 60.225 | 50.000 | 0.00 | 0.00 | 39.40 | 3.41 |
4377 | 5022 | 2.568935 | CTACGCCGCTTCTGCAAAGC | 62.569 | 60.000 | 18.09 | 18.09 | 39.64 | 3.51 |
4446 | 5091 | 2.964464 | TCAAAACATGAATGGCACCACT | 59.036 | 40.909 | 0.00 | 0.00 | 34.30 | 4.00 |
4464 | 5109 | 0.179034 | CTATCCAAGGCCAGGCTCAC | 60.179 | 60.000 | 12.43 | 0.00 | 0.00 | 3.51 |
4494 | 5139 | 0.463654 | TTCAACAGCAGCTCCAACGT | 60.464 | 50.000 | 0.00 | 0.00 | 0.00 | 3.99 |
4624 | 5269 | 4.884164 | AGAAGAATATGGCAAACTACCAGC | 59.116 | 41.667 | 0.00 | 0.00 | 41.46 | 4.85 |
4659 | 5304 | 1.079256 | CTCCCCAGGTCCTCAGTCA | 59.921 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
4662 | 5307 | 0.326048 | CCCCAGGTCCTCAGTCATCT | 60.326 | 60.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4666 | 5311 | 1.755959 | CAGGTCCTCAGTCATCTCCTG | 59.244 | 57.143 | 0.00 | 0.00 | 35.72 | 3.86 |
4699 | 5344 | 2.556287 | CCTCACCGTTTTCGCAGC | 59.444 | 61.111 | 0.00 | 0.00 | 42.58 | 5.25 |
4767 | 5412 | 1.480312 | GCCCCCACCATGCATAATACA | 60.480 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
4803 | 5448 | 4.040339 | TCATCAGAAACAGCTTCACACCTA | 59.960 | 41.667 | 0.00 | 0.00 | 36.40 | 3.08 |
4896 | 5541 | 0.251832 | TTCCTTCTCGGCCTCAGTCT | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
4899 | 5544 | 1.464734 | CTTCTCGGCCTCAGTCTACA | 58.535 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4900 | 5545 | 1.133407 | CTTCTCGGCCTCAGTCTACAC | 59.867 | 57.143 | 0.00 | 0.00 | 0.00 | 2.90 |
4932 | 5577 | 1.278985 | CAGCTATCCTCAACACCACCA | 59.721 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
5013 | 5658 | 2.045524 | GATGGGAGCTCTGATCCTCAA | 58.954 | 52.381 | 14.64 | 0.00 | 37.01 | 3.02 |
5016 | 5661 | 2.026822 | TGGGAGCTCTGATCCTCAAAAC | 60.027 | 50.000 | 14.64 | 0.00 | 37.01 | 2.43 |
5166 | 5811 | 5.407407 | TCTCCTTGGATCAGACACTAAAC | 57.593 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
5269 | 5914 | 2.221981 | GTGAAGGTGAGTTGCTTTCTCG | 59.778 | 50.000 | 0.00 | 0.00 | 34.99 | 4.04 |
5273 | 5918 | 3.851098 | AGGTGAGTTGCTTTCTCGATAC | 58.149 | 45.455 | 0.00 | 0.00 | 34.99 | 2.24 |
5278 | 5923 | 3.243336 | AGTTGCTTTCTCGATACGACAC | 58.757 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
5279 | 5924 | 2.984471 | GTTGCTTTCTCGATACGACACA | 59.016 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
5299 | 5944 | 5.473504 | ACACACAATCATGTTACTTCTTCCC | 59.526 | 40.000 | 0.00 | 0.00 | 37.82 | 3.97 |
5322 | 5967 | 6.238484 | CCCTGAAACTATCTTGCTTATTTCCG | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
5372 | 6040 | 0.949105 | AGCTACTGTCCGTTTTGCCG | 60.949 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
5378 | 6046 | 1.535462 | CTGTCCGTTTTGCCGATTTCT | 59.465 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
5423 | 6099 | 6.508777 | TGCCTTAAAATTGGTAGAAACACAC | 58.491 | 36.000 | 0.00 | 0.00 | 0.00 | 3.82 |
5427 | 6103 | 5.529581 | AAAATTGGTAGAAACACACCTGG | 57.470 | 39.130 | 0.00 | 0.00 | 35.73 | 4.45 |
5500 | 6177 | 9.896645 | AGATGCAAGAAAAAGAATACTCTGATA | 57.103 | 29.630 | 0.00 | 0.00 | 30.03 | 2.15 |
5537 | 6215 | 4.219507 | TCCATTACCGCATTTGATGTGTTT | 59.780 | 37.500 | 1.39 | 0.00 | 39.07 | 2.83 |
5638 | 6318 | 3.950395 | ACTACCATGAACTACGTAGGGAC | 59.050 | 47.826 | 25.63 | 15.97 | 33.91 | 4.46 |
5790 | 6470 | 0.249073 | CCCCGACGATGATCTGTGTC | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5801 | 6481 | 6.019762 | CGATGATCTGTGTCACTTCATTTTG | 58.980 | 40.000 | 13.97 | 7.33 | 0.00 | 2.44 |
5829 | 6509 | 1.705256 | TCTTTAACAGTAGTGCCGCG | 58.295 | 50.000 | 0.00 | 0.00 | 0.00 | 6.46 |
5849 | 6530 | 0.035630 | CCTTCCAACTCTGCAGGGAG | 60.036 | 60.000 | 23.49 | 11.34 | 39.09 | 4.30 |
5927 | 6608 | 4.044439 | AAGCAGGGCCTGGAGCTG | 62.044 | 66.667 | 33.43 | 9.87 | 43.05 | 4.24 |
6065 | 6749 | 5.122512 | TCGAAGTCGAGTTCTGAAGAAAT | 57.877 | 39.130 | 26.13 | 0.00 | 44.22 | 2.17 |
6068 | 6752 | 4.608948 | AGTCGAGTTCTGAAGAAATGGT | 57.391 | 40.909 | 0.00 | 0.00 | 35.58 | 3.55 |
6074 | 6758 | 5.333645 | CGAGTTCTGAAGAAATGGTGTTCTG | 60.334 | 44.000 | 0.00 | 0.00 | 37.90 | 3.02 |
6075 | 6759 | 5.684704 | AGTTCTGAAGAAATGGTGTTCTGA | 58.315 | 37.500 | 0.00 | 0.00 | 37.90 | 3.27 |
6076 | 6760 | 5.762218 | AGTTCTGAAGAAATGGTGTTCTGAG | 59.238 | 40.000 | 0.00 | 0.00 | 38.27 | 3.35 |
6162 | 6846 | 3.354467 | TCTCTCCTAGTTTTCGAGACCC | 58.646 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
6338 | 7030 | 6.378564 | TCTCTTCTGTGGAATACTCCTACTTG | 59.621 | 42.308 | 0.00 | 0.00 | 42.94 | 3.16 |
6376 | 7068 | 4.953940 | AGGCTCTCTAGTCATCAATTCC | 57.046 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
6391 | 7083 | 0.591170 | ATTCCCTTGTCGTTGTTGCG | 59.409 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
6392 | 7084 | 0.462225 | TTCCCTTGTCGTTGTTGCGA | 60.462 | 50.000 | 0.00 | 0.00 | 38.68 | 5.10 |
6399 | 7112 | 0.725784 | GTCGTTGTTGCGATTGCCTG | 60.726 | 55.000 | 1.50 | 0.00 | 43.07 | 4.85 |
6410 | 7123 | 2.730090 | GCGATTGCCTGTCTTGTTCATG | 60.730 | 50.000 | 0.00 | 0.00 | 33.98 | 3.07 |
6458 | 7171 | 2.112190 | TCCACATGCATCAATGGCAAT | 58.888 | 42.857 | 13.99 | 0.00 | 45.60 | 3.56 |
6467 | 7180 | 3.243301 | GCATCAATGGCAATACACCAGAG | 60.243 | 47.826 | 0.00 | 0.00 | 41.46 | 3.35 |
6505 | 7223 | 3.552875 | CATTGATCTTCATGGCCTCACT | 58.447 | 45.455 | 3.32 | 0.00 | 0.00 | 3.41 |
6506 | 7224 | 3.726557 | TTGATCTTCATGGCCTCACTT | 57.273 | 42.857 | 3.32 | 0.00 | 0.00 | 3.16 |
6507 | 7225 | 3.272574 | TGATCTTCATGGCCTCACTTC | 57.727 | 47.619 | 3.32 | 0.00 | 0.00 | 3.01 |
6508 | 7226 | 2.092753 | TGATCTTCATGGCCTCACTTCC | 60.093 | 50.000 | 3.32 | 0.00 | 0.00 | 3.46 |
6509 | 7227 | 1.361204 | TCTTCATGGCCTCACTTCCA | 58.639 | 50.000 | 3.32 | 0.00 | 36.70 | 3.53 |
6510 | 7228 | 1.280133 | TCTTCATGGCCTCACTTCCAG | 59.720 | 52.381 | 3.32 | 0.00 | 35.57 | 3.86 |
6585 | 7303 | 2.439409 | CAATCAGAAGTGGCATGTCCA | 58.561 | 47.619 | 4.93 | 4.93 | 44.18 | 4.02 |
6613 | 7331 | 5.909621 | TTACCTGTAGATGTAGAAACGCT | 57.090 | 39.130 | 0.00 | 0.00 | 0.00 | 5.07 |
6618 | 7336 | 5.386958 | TGTAGATGTAGAAACGCTCTGTT | 57.613 | 39.130 | 0.00 | 0.00 | 44.59 | 3.16 |
6629 | 7347 | 1.072159 | GCTCTGTTGTGCAGGACCT | 59.928 | 57.895 | 0.00 | 0.00 | 45.08 | 3.85 |
6631 | 7349 | 1.233019 | CTCTGTTGTGCAGGACCTTG | 58.767 | 55.000 | 0.00 | 0.00 | 45.08 | 3.61 |
6632 | 7350 | 0.179020 | TCTGTTGTGCAGGACCTTGG | 60.179 | 55.000 | 0.00 | 0.00 | 45.08 | 3.61 |
6705 | 7428 | 4.577096 | TGGGGGAAGAGGAATGTATGTAT | 58.423 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
6706 | 7429 | 4.350816 | TGGGGGAAGAGGAATGTATGTATG | 59.649 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
6707 | 7430 | 4.351111 | GGGGGAAGAGGAATGTATGTATGT | 59.649 | 45.833 | 0.00 | 0.00 | 0.00 | 2.29 |
6708 | 7431 | 5.546499 | GGGGGAAGAGGAATGTATGTATGTA | 59.454 | 44.000 | 0.00 | 0.00 | 0.00 | 2.29 |
6760 | 7489 | 2.278466 | TTTGGCTTTGCACGCGTG | 60.278 | 55.556 | 34.01 | 34.01 | 0.00 | 5.34 |
6821 | 7550 | 0.691078 | GAGGGCTACAGGTCCCATCA | 60.691 | 60.000 | 0.00 | 0.00 | 45.07 | 3.07 |
6825 | 7554 | 1.490574 | GCTACAGGTCCCATCAGACT | 58.509 | 55.000 | 0.00 | 0.00 | 36.95 | 3.24 |
6846 | 7582 | 0.706433 | ACTCATCCCCTTGTGCCAAT | 59.294 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
6847 | 7583 | 1.077663 | ACTCATCCCCTTGTGCCAATT | 59.922 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
6848 | 7584 | 1.479323 | CTCATCCCCTTGTGCCAATTG | 59.521 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
6850 | 7586 | 1.606885 | ATCCCCTTGTGCCAATTGCG | 61.607 | 55.000 | 0.00 | 0.00 | 45.60 | 4.85 |
6854 | 7590 | 1.559149 | CCTTGTGCCAATTGCGTTGC | 61.559 | 55.000 | 0.00 | 0.00 | 45.60 | 4.17 |
6855 | 7591 | 0.875040 | CTTGTGCCAATTGCGTTGCA | 60.875 | 50.000 | 0.00 | 1.11 | 45.60 | 4.08 |
6918 | 7657 | 2.625695 | TGGATGATGTGATGCGATGT | 57.374 | 45.000 | 0.00 | 0.00 | 0.00 | 3.06 |
6919 | 7658 | 2.215196 | TGGATGATGTGATGCGATGTG | 58.785 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
6920 | 7659 | 2.158928 | TGGATGATGTGATGCGATGTGA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
6921 | 7660 | 3.072211 | GGATGATGTGATGCGATGTGAT | 58.928 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
6922 | 7661 | 3.120304 | GGATGATGTGATGCGATGTGATG | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 3.07 |
6923 | 7662 | 2.908916 | TGATGTGATGCGATGTGATGT | 58.091 | 42.857 | 0.00 | 0.00 | 0.00 | 3.06 |
6924 | 7663 | 2.610374 | TGATGTGATGCGATGTGATGTG | 59.390 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
6925 | 7664 | 2.383368 | TGTGATGCGATGTGATGTGA | 57.617 | 45.000 | 0.00 | 0.00 | 0.00 | 3.58 |
6927 | 7666 | 2.610374 | TGTGATGCGATGTGATGTGATG | 59.390 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
6929 | 7668 | 0.949397 | ATGCGATGTGATGTGATGCC | 59.051 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
6930 | 7669 | 1.096967 | TGCGATGTGATGTGATGCCC | 61.097 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
6942 | 7683 | 0.402419 | TGATGCCCCTCCATCCATCT | 60.402 | 55.000 | 0.00 | 0.00 | 40.66 | 2.90 |
6943 | 7684 | 0.037877 | GATGCCCCTCCATCCATCTG | 59.962 | 60.000 | 0.00 | 0.00 | 36.46 | 2.90 |
6956 | 7697 | 0.531532 | CCATCTGTCCATCACGCTCC | 60.532 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
6959 | 7700 | 0.977627 | TCTGTCCATCACGCTCCCAT | 60.978 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
6970 | 7711 | 0.940126 | CGCTCCCATCCATTTCTTCG | 59.060 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
6971 | 7712 | 1.743772 | CGCTCCCATCCATTTCTTCGT | 60.744 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
6973 | 7714 | 2.292267 | CTCCCATCCATTTCTTCGTGG | 58.708 | 52.381 | 0.00 | 0.00 | 36.82 | 4.94 |
6974 | 7715 | 1.633432 | TCCCATCCATTTCTTCGTGGT | 59.367 | 47.619 | 0.00 | 0.00 | 36.84 | 4.16 |
6975 | 7716 | 1.745087 | CCCATCCATTTCTTCGTGGTG | 59.255 | 52.381 | 0.00 | 0.00 | 36.84 | 4.17 |
6976 | 7717 | 1.133025 | CCATCCATTTCTTCGTGGTGC | 59.867 | 52.381 | 0.00 | 0.00 | 36.84 | 5.01 |
6977 | 7718 | 2.086869 | CATCCATTTCTTCGTGGTGCT | 58.913 | 47.619 | 0.00 | 0.00 | 36.84 | 4.40 |
6978 | 7719 | 1.808411 | TCCATTTCTTCGTGGTGCTC | 58.192 | 50.000 | 0.00 | 0.00 | 36.84 | 4.26 |
6979 | 7720 | 0.804989 | CCATTTCTTCGTGGTGCTCC | 59.195 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
6980 | 7721 | 0.804989 | CATTTCTTCGTGGTGCTCCC | 59.195 | 55.000 | 1.59 | 0.00 | 0.00 | 4.30 |
6981 | 7722 | 0.673644 | ATTTCTTCGTGGTGCTCCCG | 60.674 | 55.000 | 1.59 | 5.90 | 35.15 | 5.14 |
6986 | 7744 | 3.770040 | CGTGGTGCTCCCGATCCA | 61.770 | 66.667 | 1.59 | 0.00 | 35.15 | 3.41 |
6987 | 7745 | 2.911143 | GTGGTGCTCCCGATCCAT | 59.089 | 61.111 | 1.59 | 0.00 | 35.15 | 3.41 |
6998 | 7756 | 1.362224 | CCGATCCATTCCCCAGGTAT | 58.638 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
7006 | 7764 | 1.324740 | TTCCCCAGGTATCCGTCACG | 61.325 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
7012 | 7770 | 1.660575 | GGTATCCGTCACGCCATCG | 60.661 | 63.158 | 0.00 | 0.00 | 42.43 | 3.84 |
7016 | 7774 | 4.129737 | CCGTCACGCCATCGGTCT | 62.130 | 66.667 | 0.00 | 0.00 | 40.69 | 3.85 |
7020 | 7778 | 0.669077 | GTCACGCCATCGGTCTATCT | 59.331 | 55.000 | 0.00 | 0.00 | 40.69 | 1.98 |
7028 | 7786 | 3.957497 | GCCATCGGTCTATCTATCCATCT | 59.043 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
7032 | 7790 | 6.148645 | CCATCGGTCTATCTATCCATCTATCG | 59.851 | 46.154 | 0.00 | 0.00 | 0.00 | 2.92 |
7050 | 7808 | 3.790437 | CCCACCTGGCTCGATGCT | 61.790 | 66.667 | 0.00 | 0.00 | 42.39 | 3.79 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.359602 | CCCAGTGGAGTGCTGCTG | 60.360 | 66.667 | 11.95 | 1.12 | 32.93 | 4.41 |
15 | 16 | 1.271163 | TGATGTGAACGTTTCCTCCCC | 60.271 | 52.381 | 0.46 | 0.00 | 0.00 | 4.81 |
42 | 43 | 4.175337 | GATGTGCCCGCCTGCCTA | 62.175 | 66.667 | 0.00 | 0.00 | 0.00 | 3.93 |
48 | 49 | 3.192922 | GTGTACGATGTGCCCGCC | 61.193 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
56 | 57 | 2.783832 | CTCTGCATGTACGTGTACGATG | 59.216 | 50.000 | 16.28 | 5.89 | 43.02 | 3.84 |
64 | 65 | 0.243907 | AGCGTTCTCTGCATGTACGT | 59.756 | 50.000 | 15.94 | 0.00 | 34.89 | 3.57 |
84 | 85 | 0.396060 | TGTGGCATGTGCAGTGAGTA | 59.604 | 50.000 | 7.36 | 0.00 | 44.36 | 2.59 |
85 | 86 | 1.148949 | TGTGGCATGTGCAGTGAGT | 59.851 | 52.632 | 7.36 | 0.00 | 44.36 | 3.41 |
125 | 126 | 2.103042 | GCAGTGTGATGAGGCGTCC | 61.103 | 63.158 | 3.56 | 0.00 | 0.00 | 4.79 |
126 | 127 | 0.173481 | TAGCAGTGTGATGAGGCGTC | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
130 | 131 | 8.437360 | TGTATTTTTATAGCAGTGTGATGAGG | 57.563 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
131 | 132 | 9.102757 | ACTGTATTTTTATAGCAGTGTGATGAG | 57.897 | 33.333 | 0.00 | 0.00 | 38.74 | 2.90 |
134 | 135 | 9.326413 | GGTACTGTATTTTTATAGCAGTGTGAT | 57.674 | 33.333 | 0.00 | 0.00 | 40.18 | 3.06 |
135 | 136 | 8.537016 | AGGTACTGTATTTTTATAGCAGTGTGA | 58.463 | 33.333 | 0.00 | 0.00 | 40.18 | 3.58 |
136 | 137 | 8.718102 | AGGTACTGTATTTTTATAGCAGTGTG | 57.282 | 34.615 | 0.00 | 0.00 | 40.18 | 3.82 |
244 | 287 | 1.930520 | GGCCCCTCTCTCTCTCTCT | 59.069 | 63.158 | 0.00 | 0.00 | 0.00 | 3.10 |
262 | 305 | 4.467084 | TGCTAGCCGCTTTCCCCG | 62.467 | 66.667 | 13.29 | 0.00 | 40.11 | 5.73 |
264 | 307 | 2.824489 | GGTGCTAGCCGCTTTCCC | 60.824 | 66.667 | 13.29 | 0.00 | 40.11 | 3.97 |
326 | 369 | 2.669849 | CTTGCTCTGGCTCTGGCT | 59.330 | 61.111 | 0.00 | 0.00 | 39.59 | 4.75 |
400 | 483 | 1.202710 | TGGTTGCTTGCTTACTTCGGA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 4.55 |
745 | 984 | 1.946063 | CGGGAAGGGAGGGGAGTAGA | 61.946 | 65.000 | 0.00 | 0.00 | 0.00 | 2.59 |
746 | 985 | 1.457831 | CGGGAAGGGAGGGGAGTAG | 60.458 | 68.421 | 0.00 | 0.00 | 0.00 | 2.57 |
747 | 986 | 2.234246 | GACGGGAAGGGAGGGGAGTA | 62.234 | 65.000 | 0.00 | 0.00 | 0.00 | 2.59 |
748 | 987 | 3.612607 | ACGGGAAGGGAGGGGAGT | 61.613 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
752 | 991 | 3.945064 | AAGGGACGGGAAGGGAGGG | 62.945 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
753 | 992 | 2.285442 | AAGGGACGGGAAGGGAGG | 60.285 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
763 | 1002 | 1.064758 | TGGAATGGAATGGAAGGGACG | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
764 | 1003 | 2.826674 | TGGAATGGAATGGAAGGGAC | 57.173 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
768 | 1007 | 3.640029 | CAGGGAATGGAATGGAATGGAAG | 59.360 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
904 | 1148 | 3.798511 | GGAGGCGGGGGAAGGAAG | 61.799 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
1179 | 1426 | 0.663153 | AGCACAAACGAGAACAAGGC | 59.337 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1181 | 1428 | 3.100817 | CACAAGCACAAACGAGAACAAG | 58.899 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1183 | 1433 | 2.351455 | TCACAAGCACAAACGAGAACA | 58.649 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
1185 | 1435 | 4.630894 | AAATCACAAGCACAAACGAGAA | 57.369 | 36.364 | 0.00 | 0.00 | 0.00 | 2.87 |
1217 | 1468 | 1.686355 | ATCAATCCGTCGAGAGAGCT | 58.314 | 50.000 | 0.00 | 0.00 | 43.49 | 4.09 |
1326 | 1577 | 6.441274 | ACACACAAGAAGCATTTTCATGTAG | 58.559 | 36.000 | 0.00 | 0.00 | 30.40 | 2.74 |
1405 | 1657 | 8.641498 | AGATTACACAACTGAAATTCCATTCT | 57.359 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
1425 | 1677 | 3.907474 | TGGATGGGAAATAGGCGAGATTA | 59.093 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
1613 | 1926 | 5.609423 | ACTCTGAATTCATATGCTGGTCTC | 58.391 | 41.667 | 8.96 | 0.00 | 0.00 | 3.36 |
1643 | 1959 | 3.533238 | TGGCTCTAGGGAGGGACA | 58.467 | 61.111 | 0.00 | 0.00 | 39.74 | 4.02 |
1645 | 1961 | 0.870313 | ATGATGGCTCTAGGGAGGGA | 59.130 | 55.000 | 0.00 | 0.00 | 39.80 | 4.20 |
1647 | 1963 | 4.161942 | CAGATAATGATGGCTCTAGGGAGG | 59.838 | 50.000 | 0.00 | 0.00 | 39.80 | 4.30 |
1648 | 1964 | 4.776837 | ACAGATAATGATGGCTCTAGGGAG | 59.223 | 45.833 | 0.00 | 0.00 | 42.18 | 4.30 |
1649 | 1965 | 4.756564 | ACAGATAATGATGGCTCTAGGGA | 58.243 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1683 | 2000 | 1.168407 | TGTGCAGAAGGCTTGTCAGC | 61.168 | 55.000 | 3.46 | 1.56 | 46.52 | 4.26 |
1700 | 2024 | 5.640357 | CAGCTGTAATGGCAAAATCATTTGT | 59.360 | 36.000 | 5.25 | 0.00 | 46.19 | 2.83 |
1703 | 2027 | 4.081309 | AGCAGCTGTAATGGCAAAATCATT | 60.081 | 37.500 | 16.64 | 0.00 | 38.29 | 2.57 |
1856 | 2181 | 1.228245 | GTTCCTTGCACTGGAGGCA | 60.228 | 57.895 | 7.57 | 0.00 | 40.00 | 4.75 |
1857 | 2182 | 0.538287 | AAGTTCCTTGCACTGGAGGC | 60.538 | 55.000 | 7.57 | 5.85 | 34.76 | 4.70 |
1942 | 2269 | 5.108385 | ACATAGACAAAGAAAGCAAACGG | 57.892 | 39.130 | 0.00 | 0.00 | 0.00 | 4.44 |
1984 | 2436 | 1.337823 | GCGGCTACCTGAGACAGAAAA | 60.338 | 52.381 | 0.00 | 0.00 | 32.44 | 2.29 |
2149 | 2602 | 8.786826 | ACCAATGATCAAACGAAAAGATACTA | 57.213 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
2160 | 2613 | 8.643752 | GGTAATAACAAAACCAATGATCAAACG | 58.356 | 33.333 | 0.00 | 0.00 | 33.28 | 3.60 |
2178 | 2631 | 3.248602 | CGCATCAGCCTGAAGGTAATAAC | 59.751 | 47.826 | 0.00 | 0.00 | 37.52 | 1.89 |
2715 | 3262 | 5.988287 | ACATTGTTCCCTGACACAATTTTT | 58.012 | 33.333 | 0.00 | 0.00 | 40.85 | 1.94 |
2720 | 3268 | 3.289407 | TGACATTGTTCCCTGACACAA | 57.711 | 42.857 | 0.00 | 0.00 | 37.31 | 3.33 |
2748 | 3296 | 5.416013 | GGGGAAATTGAGTAAACAGAAGGAG | 59.584 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2813 | 3364 | 7.327032 | CCTGCAAAATAAGAGCTTTTCAGTAAC | 59.673 | 37.037 | 0.00 | 0.00 | 0.00 | 2.50 |
3006 | 3591 | 6.295575 | GGGGATACACAAATTTGACCAATGAA | 60.296 | 38.462 | 24.64 | 1.92 | 42.67 | 2.57 |
3040 | 3677 | 3.087031 | AGCTGATTGTTGTCATTCCTGG | 58.913 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
3229 | 3866 | 4.486125 | AGGAAAAGCACCAAACAAACAT | 57.514 | 36.364 | 0.00 | 0.00 | 0.00 | 2.71 |
3238 | 3875 | 3.243839 | GCATTCAGAAAGGAAAAGCACCA | 60.244 | 43.478 | 0.00 | 0.00 | 34.20 | 4.17 |
3239 | 3876 | 3.006217 | AGCATTCAGAAAGGAAAAGCACC | 59.994 | 43.478 | 0.00 | 0.00 | 35.56 | 5.01 |
3446 | 4083 | 7.452880 | TGCTGCAACTTGTCTAGAATAAAAT | 57.547 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3645 | 4288 | 4.666512 | ACTTGACTGGAGGCAATAACAAT | 58.333 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
3648 | 4291 | 3.686726 | CAGACTTGACTGGAGGCAATAAC | 59.313 | 47.826 | 0.00 | 0.00 | 34.64 | 1.89 |
3700 | 4343 | 2.803030 | AAGAGCGTACAGAGGGAGTA | 57.197 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3703 | 4346 | 4.434545 | ACTATAAGAGCGTACAGAGGGA | 57.565 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
3704 | 4347 | 4.822896 | AGAACTATAAGAGCGTACAGAGGG | 59.177 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3705 | 4348 | 6.380095 | AAGAACTATAAGAGCGTACAGAGG | 57.620 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
3706 | 4349 | 7.583401 | CGTAAAGAACTATAAGAGCGTACAGAG | 59.417 | 40.741 | 0.00 | 0.00 | 0.00 | 3.35 |
3707 | 4350 | 7.404985 | CGTAAAGAACTATAAGAGCGTACAGA | 58.595 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
3708 | 4351 | 6.632035 | CCGTAAAGAACTATAAGAGCGTACAG | 59.368 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
3709 | 4352 | 6.316140 | TCCGTAAAGAACTATAAGAGCGTACA | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
3710 | 4353 | 6.719365 | TCCGTAAAGAACTATAAGAGCGTAC | 58.281 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3711 | 4354 | 6.017605 | CCTCCGTAAAGAACTATAAGAGCGTA | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 4.42 |
3712 | 4355 | 5.221009 | CCTCCGTAAAGAACTATAAGAGCGT | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 5.07 |
3713 | 4356 | 5.213675 | CCTCCGTAAAGAACTATAAGAGCG | 58.786 | 45.833 | 0.00 | 0.00 | 0.00 | 5.03 |
3714 | 4357 | 5.301298 | TCCCTCCGTAAAGAACTATAAGAGC | 59.699 | 44.000 | 0.00 | 0.00 | 0.00 | 4.09 |
3715 | 4358 | 6.546772 | ACTCCCTCCGTAAAGAACTATAAGAG | 59.453 | 42.308 | 0.00 | 0.00 | 0.00 | 2.85 |
3716 | 4359 | 6.430007 | ACTCCCTCCGTAAAGAACTATAAGA | 58.570 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3717 | 4360 | 6.712179 | ACTCCCTCCGTAAAGAACTATAAG | 57.288 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
3718 | 4361 | 8.000709 | TGATACTCCCTCCGTAAAGAACTATAA | 58.999 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
3719 | 4362 | 7.520798 | TGATACTCCCTCCGTAAAGAACTATA | 58.479 | 38.462 | 0.00 | 0.00 | 0.00 | 1.31 |
3720 | 4363 | 6.371278 | TGATACTCCCTCCGTAAAGAACTAT | 58.629 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3721 | 4364 | 5.759059 | TGATACTCCCTCCGTAAAGAACTA | 58.241 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
3722 | 4365 | 4.607239 | TGATACTCCCTCCGTAAAGAACT | 58.393 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
3723 | 4366 | 4.996788 | TGATACTCCCTCCGTAAAGAAC | 57.003 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
3724 | 4367 | 4.202223 | GCATGATACTCCCTCCGTAAAGAA | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 2.52 |
3725 | 4368 | 3.321111 | GCATGATACTCCCTCCGTAAAGA | 59.679 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
3726 | 4369 | 3.069586 | TGCATGATACTCCCTCCGTAAAG | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 1.85 |
3727 | 4370 | 3.035363 | TGCATGATACTCCCTCCGTAAA | 58.965 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
3728 | 4371 | 2.673258 | TGCATGATACTCCCTCCGTAA | 58.327 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
3729 | 4372 | 2.375014 | TGCATGATACTCCCTCCGTA | 57.625 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3730 | 4373 | 1.496060 | TTGCATGATACTCCCTCCGT | 58.504 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
3731 | 4374 | 2.158900 | ACTTTGCATGATACTCCCTCCG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3732 | 4375 | 3.567478 | ACTTTGCATGATACTCCCTCC | 57.433 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
3733 | 4376 | 5.904362 | AAAACTTTGCATGATACTCCCTC | 57.096 | 39.130 | 0.00 | 0.00 | 0.00 | 4.30 |
3734 | 4377 | 5.539955 | ACAAAAACTTTGCATGATACTCCCT | 59.460 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3735 | 4378 | 5.783111 | ACAAAAACTTTGCATGATACTCCC | 58.217 | 37.500 | 0.00 | 0.00 | 0.00 | 4.30 |
3736 | 4379 | 8.296713 | TCTAACAAAAACTTTGCATGATACTCC | 58.703 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
3737 | 4380 | 9.118236 | GTCTAACAAAAACTTTGCATGATACTC | 57.882 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
3738 | 4381 | 8.629158 | TGTCTAACAAAAACTTTGCATGATACT | 58.371 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
3739 | 4382 | 8.795786 | TGTCTAACAAAAACTTTGCATGATAC | 57.204 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
3740 | 4383 | 9.462174 | CTTGTCTAACAAAAACTTTGCATGATA | 57.538 | 29.630 | 0.00 | 0.00 | 37.69 | 2.15 |
3741 | 4384 | 8.196771 | TCTTGTCTAACAAAAACTTTGCATGAT | 58.803 | 29.630 | 0.00 | 0.00 | 37.69 | 2.45 |
3742 | 4385 | 7.542890 | TCTTGTCTAACAAAAACTTTGCATGA | 58.457 | 30.769 | 0.00 | 0.00 | 37.69 | 3.07 |
3771 | 4416 | 8.845413 | AAAGAGCAAGCAATATCTATAGGAAG | 57.155 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
3793 | 4438 | 3.724374 | TGTGAGGTTGGTACGAAGAAAG | 58.276 | 45.455 | 0.00 | 0.00 | 0.00 | 2.62 |
3800 | 4445 | 2.735134 | GCTAAACTGTGAGGTTGGTACG | 59.265 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3886 | 4531 | 0.258774 | AAAGTGACACCCTTGGCTGT | 59.741 | 50.000 | 0.84 | 0.00 | 0.00 | 4.40 |
4090 | 4735 | 8.865090 | ACCACCTACAGAAAGAGATAGATAATG | 58.135 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
4173 | 4818 | 1.394917 | CCGAAATTCAGCGACTGGAAG | 59.605 | 52.381 | 6.95 | 0.00 | 42.29 | 3.46 |
4242 | 4887 | 0.321671 | TGTCAGGCTGTAGACCAAGC | 59.678 | 55.000 | 15.27 | 0.00 | 33.89 | 4.01 |
4311 | 4956 | 0.605319 | GGAACTGCAACATCGTGGGA | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4446 | 5091 | 0.621571 | AGTGAGCCTGGCCTTGGATA | 60.622 | 55.000 | 16.57 | 2.04 | 0.00 | 2.59 |
4464 | 5109 | 3.065655 | CTGCTGTTGAAGGAACTCAGAG | 58.934 | 50.000 | 0.00 | 0.00 | 38.49 | 3.35 |
4494 | 5139 | 1.202915 | TGCTCATTGAAGGACTGGCAA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
4624 | 5269 | 3.495806 | GGGGAGAGTTGAGAATATGCTGG | 60.496 | 52.174 | 0.00 | 0.00 | 0.00 | 4.85 |
4680 | 5325 | 1.961277 | CTGCGAAAACGGTGAGGCT | 60.961 | 57.895 | 0.00 | 0.00 | 0.00 | 4.58 |
4685 | 5330 | 2.175184 | CTGAGGCTGCGAAAACGGTG | 62.175 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
4699 | 5344 | 1.433534 | GTGTCCGAAAAGCTCTGAGG | 58.566 | 55.000 | 6.83 | 0.00 | 0.00 | 3.86 |
4753 | 5398 | 2.899256 | GCCCCAATGTATTATGCATGGT | 59.101 | 45.455 | 10.16 | 0.00 | 0.00 | 3.55 |
4767 | 5412 | 1.854939 | TCTGATGAGAATGGCCCCAAT | 59.145 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
4803 | 5448 | 2.418746 | CGCAGTAGGCCTTGACATACTT | 60.419 | 50.000 | 12.58 | 0.00 | 35.10 | 2.24 |
4896 | 5541 | 0.953471 | GCTGTTCCATGTGCGGTGTA | 60.953 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4899 | 5544 | 0.253044 | ATAGCTGTTCCATGTGCGGT | 59.747 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
4900 | 5545 | 0.940126 | GATAGCTGTTCCATGTGCGG | 59.060 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
5013 | 5658 | 1.679153 | ACGCCGAACAAAAGATGGTTT | 59.321 | 42.857 | 0.00 | 0.00 | 0.00 | 3.27 |
5016 | 5661 | 3.546002 | TTAACGCCGAACAAAAGATGG | 57.454 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
5166 | 5811 | 2.943690 | CTCATCCAAGCATCCTGAACTG | 59.056 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5260 | 5905 | 2.030628 | TGTGTGTCGTATCGAGAAAGCA | 60.031 | 45.455 | 0.00 | 0.00 | 36.23 | 3.91 |
5269 | 5914 | 6.887376 | AGTAACATGATTGTGTGTCGTATC | 57.113 | 37.500 | 0.00 | 0.00 | 35.83 | 2.24 |
5273 | 5918 | 5.845985 | AGAAGTAACATGATTGTGTGTCG | 57.154 | 39.130 | 0.00 | 0.00 | 35.83 | 4.35 |
5278 | 5923 | 5.939883 | TCAGGGAAGAAGTAACATGATTGTG | 59.060 | 40.000 | 0.00 | 0.00 | 35.83 | 3.33 |
5279 | 5924 | 6.126863 | TCAGGGAAGAAGTAACATGATTGT | 57.873 | 37.500 | 0.00 | 0.00 | 37.82 | 2.71 |
5299 | 5944 | 7.064609 | TCACGGAAATAAGCAAGATAGTTTCAG | 59.935 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
5322 | 5967 | 8.850454 | TTGTTAAAGAAGCAACATAGTTTCAC | 57.150 | 30.769 | 0.00 | 0.00 | 34.78 | 3.18 |
5357 | 6025 | 1.265905 | GAAATCGGCAAAACGGACAGT | 59.734 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
5363 | 6031 | 3.268013 | AGTCAAGAAATCGGCAAAACG | 57.732 | 42.857 | 0.00 | 0.00 | 0.00 | 3.60 |
5378 | 6046 | 7.568349 | AGGCATGTCTTTCTATTGATAGTCAA | 58.432 | 34.615 | 0.00 | 0.00 | 41.09 | 3.18 |
5423 | 6099 | 6.575162 | AAGTTGAGTAAAAATAGCACCAGG | 57.425 | 37.500 | 0.00 | 0.00 | 0.00 | 4.45 |
5427 | 6103 | 7.114953 | GCTCCAAAAGTTGAGTAAAAATAGCAC | 59.885 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
5500 | 6177 | 6.103330 | GCGGTAATGGACAATTTACCAAAAT | 58.897 | 36.000 | 12.71 | 0.00 | 39.69 | 1.82 |
5548 | 6228 | 5.163302 | TGTAAACCTGTTTGATGTTCACG | 57.837 | 39.130 | 5.55 | 0.00 | 34.23 | 4.35 |
5584 | 6264 | 2.158957 | GGTGATATCAAGCGACCTTCCA | 60.159 | 50.000 | 7.07 | 0.00 | 0.00 | 3.53 |
5638 | 6318 | 2.519302 | CCAAATAGGCGCCCCAGG | 60.519 | 66.667 | 26.15 | 14.79 | 0.00 | 4.45 |
5790 | 6470 | 4.304110 | AGAACAGCATGCAAAATGAAGTG | 58.696 | 39.130 | 21.98 | 8.37 | 42.53 | 3.16 |
5829 | 6509 | 1.676967 | CCCTGCAGAGTTGGAAGGC | 60.677 | 63.158 | 17.39 | 0.00 | 0.00 | 4.35 |
5840 | 6521 | 0.249868 | TGTTCACGAACTCCCTGCAG | 60.250 | 55.000 | 6.78 | 6.78 | 41.67 | 4.41 |
5849 | 6530 | 0.874607 | AGGACACGCTGTTCACGAAC | 60.875 | 55.000 | 2.89 | 2.89 | 41.50 | 3.95 |
6063 | 6747 | 0.036010 | CCTCGCCTCAGAACACCATT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
6065 | 6749 | 3.059982 | CCTCGCCTCAGAACACCA | 58.940 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
6068 | 6752 | 2.492449 | CTTCGCCTCGCCTCAGAACA | 62.492 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
6137 | 6821 | 5.404096 | GTCTCGAAAACTAGGAGAGAAAGG | 58.596 | 45.833 | 0.00 | 0.00 | 39.33 | 3.11 |
6162 | 6846 | 1.172180 | TGCTTGCTTTCCAGTTCCGG | 61.172 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
6338 | 7030 | 4.061596 | GAGCCTACATTCACAGGATTAGC | 58.938 | 47.826 | 0.00 | 0.00 | 33.42 | 3.09 |
6376 | 7068 | 1.673760 | CAATCGCAACAACGACAAGG | 58.326 | 50.000 | 0.00 | 0.00 | 46.28 | 3.61 |
6391 | 7083 | 4.217118 | AGAACATGAACAAGACAGGCAATC | 59.783 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
6392 | 7084 | 4.022589 | CAGAACATGAACAAGACAGGCAAT | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
6399 | 7112 | 4.913924 | GTCAATGCAGAACATGAACAAGAC | 59.086 | 41.667 | 0.00 | 0.20 | 39.60 | 3.01 |
6458 | 7171 | 6.430308 | CACTCTACTAACTGAACTCTGGTGTA | 59.570 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
6467 | 7180 | 7.038659 | AGATCAATGCACTCTACTAACTGAAC | 58.961 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
6505 | 7223 | 3.055819 | GTGCTACTCATCTGGAACTGGAA | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 3.53 |
6506 | 7224 | 2.497675 | GTGCTACTCATCTGGAACTGGA | 59.502 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
6507 | 7225 | 2.419297 | GGTGCTACTCATCTGGAACTGG | 60.419 | 54.545 | 0.00 | 0.00 | 0.00 | 4.00 |
6508 | 7226 | 2.419297 | GGGTGCTACTCATCTGGAACTG | 60.419 | 54.545 | 0.00 | 0.00 | 0.00 | 3.16 |
6509 | 7227 | 1.834263 | GGGTGCTACTCATCTGGAACT | 59.166 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
6510 | 7228 | 1.834263 | AGGGTGCTACTCATCTGGAAC | 59.166 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
6566 | 7284 | 2.885135 | TGGACATGCCACTTCTGATT | 57.115 | 45.000 | 4.93 | 0.00 | 43.33 | 2.57 |
6587 | 7305 | 8.472413 | AGCGTTTCTACATCTACAGGTAAATAA | 58.528 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
6588 | 7306 | 8.004087 | AGCGTTTCTACATCTACAGGTAAATA | 57.996 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
6589 | 7307 | 6.875076 | AGCGTTTCTACATCTACAGGTAAAT | 58.125 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
6590 | 7308 | 6.152323 | AGAGCGTTTCTACATCTACAGGTAAA | 59.848 | 38.462 | 0.00 | 0.00 | 33.23 | 2.01 |
6591 | 7309 | 5.651139 | AGAGCGTTTCTACATCTACAGGTAA | 59.349 | 40.000 | 0.00 | 0.00 | 33.23 | 2.85 |
6595 | 7313 | 4.987832 | ACAGAGCGTTTCTACATCTACAG | 58.012 | 43.478 | 0.00 | 0.00 | 33.83 | 2.74 |
6613 | 7331 | 4.707776 | GACCAAGGTCCTGCACAACAGA | 62.708 | 54.545 | 8.06 | 0.00 | 46.81 | 3.41 |
6705 | 7428 | 0.623031 | TGATGGGGTGGATGCCTACA | 60.623 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6706 | 7429 | 0.773644 | ATGATGGGGTGGATGCCTAC | 59.226 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
6707 | 7430 | 1.425066 | GAATGATGGGGTGGATGCCTA | 59.575 | 52.381 | 0.00 | 0.00 | 0.00 | 3.93 |
6708 | 7431 | 0.186873 | GAATGATGGGGTGGATGCCT | 59.813 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
6773 | 7502 | 4.383861 | TGCCGCTCTGCTCTGGTG | 62.384 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
6774 | 7503 | 4.385405 | GTGCCGCTCTGCTCTGGT | 62.385 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
6821 | 7550 | 1.905215 | CACAAGGGGATGAGTGAGTCT | 59.095 | 52.381 | 0.00 | 0.00 | 33.99 | 3.24 |
6825 | 7554 | 1.133181 | TGGCACAAGGGGATGAGTGA | 61.133 | 55.000 | 0.00 | 0.00 | 33.99 | 3.41 |
6847 | 7583 | 0.179059 | TCCTCAGTCTTTGCAACGCA | 60.179 | 50.000 | 0.00 | 0.00 | 36.47 | 5.24 |
6848 | 7584 | 1.160137 | ATCCTCAGTCTTTGCAACGC | 58.840 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
6850 | 7586 | 4.759183 | AGAGAAATCCTCAGTCTTTGCAAC | 59.241 | 41.667 | 0.00 | 0.00 | 44.40 | 4.17 |
6854 | 7590 | 7.502120 | TCAAAAGAGAAATCCTCAGTCTTTG | 57.498 | 36.000 | 0.00 | 0.00 | 44.40 | 2.77 |
6855 | 7591 | 8.525290 | TTTCAAAAGAGAAATCCTCAGTCTTT | 57.475 | 30.769 | 0.00 | 0.00 | 44.40 | 2.52 |
6859 | 7595 | 9.018582 | CCTAATTTCAAAAGAGAAATCCTCAGT | 57.981 | 33.333 | 2.78 | 0.00 | 44.96 | 3.41 |
6860 | 7596 | 9.236006 | TCCTAATTTCAAAAGAGAAATCCTCAG | 57.764 | 33.333 | 2.78 | 0.22 | 44.96 | 3.35 |
6861 | 7597 | 9.236006 | CTCCTAATTTCAAAAGAGAAATCCTCA | 57.764 | 33.333 | 2.78 | 0.00 | 44.96 | 3.86 |
6862 | 7598 | 9.454859 | TCTCCTAATTTCAAAAGAGAAATCCTC | 57.545 | 33.333 | 2.78 | 0.00 | 44.96 | 3.71 |
6863 | 7599 | 9.813826 | TTCTCCTAATTTCAAAAGAGAAATCCT | 57.186 | 29.630 | 2.78 | 0.00 | 44.96 | 3.24 |
6890 | 7629 | 5.311265 | GCATCACATCATCCATCTTTCCTA | 58.689 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
6918 | 7657 | 0.475475 | GATGGAGGGGCATCACATCA | 59.525 | 55.000 | 0.00 | 0.00 | 38.20 | 3.07 |
6919 | 7658 | 0.251077 | GGATGGAGGGGCATCACATC | 60.251 | 60.000 | 0.00 | 0.00 | 37.73 | 3.06 |
6920 | 7659 | 0.995132 | TGGATGGAGGGGCATCACAT | 60.995 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
6921 | 7660 | 0.995132 | ATGGATGGAGGGGCATCACA | 60.995 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
6922 | 7661 | 0.251077 | GATGGATGGAGGGGCATCAC | 60.251 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
6923 | 7662 | 0.402419 | AGATGGATGGAGGGGCATCA | 60.402 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
6924 | 7663 | 0.037877 | CAGATGGATGGAGGGGCATC | 59.962 | 60.000 | 0.00 | 0.00 | 0.00 | 3.91 |
6925 | 7664 | 0.700269 | ACAGATGGATGGAGGGGCAT | 60.700 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
6927 | 7666 | 1.453669 | GACAGATGGATGGAGGGGC | 59.546 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
6929 | 7668 | 1.350351 | GATGGACAGATGGATGGAGGG | 59.650 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
6930 | 7669 | 2.052468 | TGATGGACAGATGGATGGAGG | 58.948 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
6942 | 7683 | 1.522092 | GATGGGAGCGTGATGGACA | 59.478 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
6943 | 7684 | 1.227674 | GGATGGGAGCGTGATGGAC | 60.228 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
6956 | 7697 | 1.133025 | GCACCACGAAGAAATGGATGG | 59.867 | 52.381 | 0.00 | 0.00 | 39.46 | 3.51 |
6959 | 7700 | 1.610624 | GGAGCACCACGAAGAAATGGA | 60.611 | 52.381 | 0.00 | 0.00 | 39.46 | 3.41 |
6970 | 7711 | 0.815615 | GAATGGATCGGGAGCACCAC | 60.816 | 60.000 | 1.58 | 0.00 | 40.22 | 4.16 |
6971 | 7712 | 1.526887 | GAATGGATCGGGAGCACCA | 59.473 | 57.895 | 1.58 | 0.00 | 40.22 | 4.17 |
6973 | 7714 | 1.227973 | GGGAATGGATCGGGAGCAC | 60.228 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
6974 | 7715 | 2.452064 | GGGGAATGGATCGGGAGCA | 61.452 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
6975 | 7716 | 2.403132 | CTGGGGAATGGATCGGGAGC | 62.403 | 65.000 | 0.00 | 0.00 | 0.00 | 4.70 |
6976 | 7717 | 1.757306 | CTGGGGAATGGATCGGGAG | 59.243 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
6977 | 7718 | 1.770110 | CCTGGGGAATGGATCGGGA | 60.770 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
6978 | 7719 | 0.766674 | TACCTGGGGAATGGATCGGG | 60.767 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
6979 | 7720 | 1.279271 | GATACCTGGGGAATGGATCGG | 59.721 | 57.143 | 0.00 | 0.00 | 0.00 | 4.18 |
6980 | 7721 | 1.279271 | GGATACCTGGGGAATGGATCG | 59.721 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
6981 | 7722 | 1.279271 | CGGATACCTGGGGAATGGATC | 59.721 | 57.143 | 0.00 | 0.00 | 0.00 | 3.36 |
6986 | 7744 | 1.129058 | GTGACGGATACCTGGGGAAT | 58.871 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
6987 | 7745 | 1.324740 | CGTGACGGATACCTGGGGAA | 61.325 | 60.000 | 0.00 | 0.00 | 0.00 | 3.97 |
7006 | 7764 | 3.957497 | AGATGGATAGATAGACCGATGGC | 59.043 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
7012 | 7770 | 4.521256 | GGGCGATAGATGGATAGATAGACC | 59.479 | 50.000 | 0.00 | 0.00 | 39.76 | 3.85 |
7016 | 7774 | 4.079154 | AGGTGGGCGATAGATGGATAGATA | 60.079 | 45.833 | 0.00 | 0.00 | 39.76 | 1.98 |
7020 | 7778 | 2.179427 | CAGGTGGGCGATAGATGGATA | 58.821 | 52.381 | 0.00 | 0.00 | 39.76 | 2.59 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.