Multiple sequence alignment - TraesCS7D01G449800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G449800 chr7D 100.000 3204 0 0 1 3204 568757204 568754001 0.000000e+00 5917
1 TraesCS7D01G449800 chr7A 92.579 3234 145 43 1 3204 657521140 657517972 0.000000e+00 4554
2 TraesCS7D01G449800 chr7A 91.105 371 32 1 1109 1479 474143520 474143151 4.770000e-138 501
3 TraesCS7D01G449800 chr7A 96.825 63 2 0 1109 1171 631782311 631782373 4.370000e-19 106
4 TraesCS7D01G449800 chr7B 91.226 3214 156 63 34 3204 624948251 624945121 0.000000e+00 4257
5 TraesCS7D01G449800 chr7B 87.037 324 26 3 1156 1479 604278042 604278349 5.090000e-93 351
6 TraesCS7D01G449800 chr7B 91.403 221 19 0 1153 1373 532456383 532456163 1.440000e-78 303
7 TraesCS7D01G449800 chr4B 84.049 326 35 4 1151 1476 235738423 235738731 6.720000e-77 298
8 TraesCS7D01G449800 chr4B 83.436 326 37 4 1151 1476 225958037 225958345 1.450000e-73 287
9 TraesCS7D01G449800 chr3D 94.495 109 6 0 1144 1252 23125131 23125239 5.500000e-38 169
10 TraesCS7D01G449800 chr5A 98.246 57 1 0 1109 1165 102507872 102507816 2.030000e-17 100
11 TraesCS7D01G449800 chrUn 95.161 62 3 0 1109 1170 312658405 312658344 7.310000e-17 99
12 TraesCS7D01G449800 chrUn 95.161 62 3 0 1109 1170 312666039 312665978 7.310000e-17 99
13 TraesCS7D01G449800 chrUn 95.161 62 3 0 1109 1170 478091031 478090970 7.310000e-17 99
14 TraesCS7D01G449800 chr2B 95.161 62 3 0 1109 1170 760342690 760342751 7.310000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G449800 chr7D 568754001 568757204 3203 True 5917 5917 100.000 1 3204 1 chr7D.!!$R1 3203
1 TraesCS7D01G449800 chr7A 657517972 657521140 3168 True 4554 4554 92.579 1 3204 1 chr7A.!!$R2 3203
2 TraesCS7D01G449800 chr7B 624945121 624948251 3130 True 4257 4257 91.226 34 3204 1 chr7B.!!$R2 3170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 985 0.389948 AAAGCCCTCACACGACGATC 60.39 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2434 2504 1.195115 TCTTGCGGCATTCTAGGAGT 58.805 50.0 2.28 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 5.514500 AACAAGAACTATAAAGGAGGCCA 57.486 39.130 5.01 0.00 0.00 5.36
125 126 4.844884 ACAAGAACTATAAAGGAGGCCAC 58.155 43.478 5.01 0.00 0.00 5.01
126 127 4.200092 CAAGAACTATAAAGGAGGCCACC 58.800 47.826 11.96 11.96 0.00 4.61
283 285 1.997311 CACATGCCTCCTCCCCTCA 60.997 63.158 0.00 0.00 0.00 3.86
284 286 1.692042 ACATGCCTCCTCCCCTCAG 60.692 63.158 0.00 0.00 0.00 3.35
335 339 2.366916 CGATTAGACTCCCCTCTTGCAT 59.633 50.000 0.00 0.00 0.00 3.96
346 350 3.385433 CCCCTCTTGCATGCATCAATTAA 59.615 43.478 23.37 3.14 0.00 1.40
347 351 4.039973 CCCCTCTTGCATGCATCAATTAAT 59.960 41.667 23.37 0.00 0.00 1.40
348 352 5.227908 CCCTCTTGCATGCATCAATTAATC 58.772 41.667 23.37 0.00 0.00 1.75
350 354 6.462487 CCCTCTTGCATGCATCAATTAATCTT 60.462 38.462 23.37 0.00 0.00 2.40
351 355 6.420903 CCTCTTGCATGCATCAATTAATCTTG 59.579 38.462 23.37 0.00 0.00 3.02
352 356 6.869695 TCTTGCATGCATCAATTAATCTTGT 58.130 32.000 23.37 0.00 0.00 3.16
355 359 9.256477 CTTGCATGCATCAATTAATCTTGTTAT 57.744 29.630 23.37 0.00 0.00 1.89
356 360 8.806177 TGCATGCATCAATTAATCTTGTTATC 57.194 30.769 18.46 0.00 0.00 1.75
357 361 8.635328 TGCATGCATCAATTAATCTTGTTATCT 58.365 29.630 18.46 0.00 0.00 1.98
358 362 8.912658 GCATGCATCAATTAATCTTGTTATCTG 58.087 33.333 14.21 0.00 0.00 2.90
483 501 1.263484 CATGATTGTGGCGATCAGAGC 59.737 52.381 5.45 0.00 37.64 4.09
484 502 0.807275 TGATTGTGGCGATCAGAGCG 60.807 55.000 2.97 2.97 31.41 5.03
502 520 1.369689 GCGCGCTTAATCATGCAGG 60.370 57.895 26.67 0.00 0.00 4.85
549 569 2.290260 TGACCACCCACAAGCAAGATAG 60.290 50.000 0.00 0.00 0.00 2.08
552 572 3.012518 CCACCCACAAGCAAGATAGAAG 58.987 50.000 0.00 0.00 0.00 2.85
553 573 3.560025 CCACCCACAAGCAAGATAGAAGT 60.560 47.826 0.00 0.00 0.00 3.01
651 696 4.037690 GTGCAATGTTCTGTGACTGTTTC 58.962 43.478 0.00 0.00 0.00 2.78
659 704 1.605710 CTGTGACTGTTTCCTGCCAAG 59.394 52.381 0.00 0.00 0.00 3.61
701 746 8.540388 AGAACTGTAATTTATCTTCTGCAGGTA 58.460 33.333 15.13 1.26 0.00 3.08
702 747 8.723942 AACTGTAATTTATCTTCTGCAGGTAG 57.276 34.615 15.13 11.88 0.00 3.18
709 754 7.476540 TTTATCTTCTGCAGGTAGTTCACTA 57.523 36.000 15.13 0.00 0.00 2.74
803 852 1.406341 GGCACTGAAACGGGCACTATA 60.406 52.381 0.00 0.00 0.00 1.31
804 853 2.561569 GCACTGAAACGGGCACTATAT 58.438 47.619 0.00 0.00 0.00 0.86
845 894 1.067635 CCAAAAGCACCCATCTTTCCG 60.068 52.381 0.00 0.00 33.06 4.30
858 907 2.294132 CTTTCCGACCTACTCGCCCC 62.294 65.000 0.00 0.00 41.46 5.80
881 930 6.929049 CCCGCTTGTCTCTTGTATAAATCATA 59.071 38.462 0.00 0.00 0.00 2.15
883 932 8.491152 CCGCTTGTCTCTTGTATAAATCATAAG 58.509 37.037 0.00 0.00 0.00 1.73
888 937 9.973450 TGTCTCTTGTATAAATCATAAGAGCTC 57.027 33.333 5.27 5.27 42.39 4.09
890 939 8.300286 TCTCTTGTATAAATCATAAGAGCTCCG 58.700 37.037 10.93 0.00 42.39 4.63
929 981 1.941812 CACAAAGCCCTCACACGAC 59.058 57.895 0.00 0.00 0.00 4.34
930 982 1.594293 ACAAAGCCCTCACACGACG 60.594 57.895 0.00 0.00 0.00 5.12
931 983 1.300620 CAAAGCCCTCACACGACGA 60.301 57.895 0.00 0.00 0.00 4.20
932 984 0.670546 CAAAGCCCTCACACGACGAT 60.671 55.000 0.00 0.00 0.00 3.73
933 985 0.389948 AAAGCCCTCACACGACGATC 60.390 55.000 0.00 0.00 0.00 3.69
934 986 2.543687 AAGCCCTCACACGACGATCG 62.544 60.000 14.88 14.88 46.93 3.69
935 987 3.047718 GCCCTCACACGACGATCGA 62.048 63.158 24.34 0.00 43.74 3.59
936 988 1.062685 CCCTCACACGACGATCGAG 59.937 63.158 24.34 17.22 43.74 4.04
937 989 1.583967 CCTCACACGACGATCGAGC 60.584 63.158 24.34 12.23 43.74 5.03
979 1031 2.691409 TTATAGTGGTGTGCTCTGGC 57.309 50.000 0.00 0.00 39.26 4.85
990 1042 2.887568 CTCTGGCGCGTGTGATCC 60.888 66.667 8.43 0.00 0.00 3.36
1218 1271 1.651461 GTACTACTCCTACGGCGGC 59.349 63.158 13.24 0.00 0.00 6.53
1487 1549 0.032815 TGAACCAGACGATTCGTGCA 59.967 50.000 17.75 2.35 41.37 4.57
1513 1575 4.754114 TGCATGAAGTATTTTGGTTTTGGC 59.246 37.500 0.00 0.00 0.00 4.52
1571 1633 1.723542 CATTCTGACGATCATAGCCGC 59.276 52.381 0.00 0.00 0.00 6.53
2222 2284 1.747355 AGCATTCATTAGCAGTGGCAC 59.253 47.619 10.29 10.29 44.61 5.01
2231 2293 1.080974 GCAGTGGCACAAGCATGAC 60.081 57.895 24.19 6.41 44.16 3.06
2241 2303 2.228582 CACAAGCATGACGGGATTTGAA 59.771 45.455 0.00 0.00 0.00 2.69
2242 2304 2.489329 ACAAGCATGACGGGATTTGAAG 59.511 45.455 0.00 0.00 0.00 3.02
2244 2306 3.071874 AGCATGACGGGATTTGAAGAA 57.928 42.857 0.00 0.00 0.00 2.52
2271 2341 5.046950 ACATTAGGTCTCAACTCTCAAGTCC 60.047 44.000 0.00 0.00 33.48 3.85
2296 2366 6.889198 TCCACTCAAAAGAAGAGAAAGAAGA 58.111 36.000 0.00 0.00 36.91 2.87
2298 2368 7.659390 TCCACTCAAAAGAAGAGAAAGAAGATC 59.341 37.037 0.00 0.00 36.91 2.75
2315 2385 4.425577 AGATCGATTTGAAGTTGCAACC 57.574 40.909 25.62 12.17 0.00 3.77
2369 2439 8.161699 TGATGATATGTCCAGATCAACATTTG 57.838 34.615 8.50 0.00 41.64 2.32
2387 2457 9.307121 CAACATTTGTTTCCACTGTAATGTTTA 57.693 29.630 11.03 0.00 41.58 2.01
2412 2482 2.513753 TGGAGGATTGAACGCATTTGT 58.486 42.857 0.00 0.00 0.00 2.83
2467 2537 3.384668 CCGCAAGATTGAGACGATGTAT 58.615 45.455 0.00 0.00 43.02 2.29
2527 2599 1.354101 ACAGGGTCCACATACGGAAA 58.646 50.000 0.00 0.00 36.62 3.13
2535 2607 4.379082 GGTCCACATACGGAAAAACATGAC 60.379 45.833 0.00 0.00 36.62 3.06
2552 2624 6.369059 ACATGACTTTCTCAACACAAGAAG 57.631 37.500 0.00 0.00 34.42 2.85
2565 2638 3.131046 ACACAAGAAGCAGGTTCCTTTTG 59.869 43.478 8.80 9.48 35.51 2.44
2575 2649 4.024809 GCAGGTTCCTTTTGCTCGTATATC 60.025 45.833 0.00 0.00 35.05 1.63
2829 2903 1.005394 ACTACACCCGTGGCGAAAG 60.005 57.895 0.00 0.00 34.19 2.62
2889 2963 3.303881 TTTGTCCTCGTGATGACTCTG 57.696 47.619 6.80 0.00 32.67 3.35
3089 3163 6.109156 TGTTATGTCAGGTCACAATACAGT 57.891 37.500 0.00 0.00 0.00 3.55
3100 3174 3.740832 TCACAATACAGTTCAAGACAGCG 59.259 43.478 0.00 0.00 0.00 5.18
3101 3175 2.480419 ACAATACAGTTCAAGACAGCGC 59.520 45.455 0.00 0.00 0.00 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.967199 CAGGGCGTAGAAAATTATTTGAGAAC 59.033 38.462 0.00 0.00 0.00 3.01
26 27 6.657541 ACAGGGCGTAGAAAATTATTTGAGAA 59.342 34.615 0.00 0.00 0.00 2.87
27 28 6.177610 ACAGGGCGTAGAAAATTATTTGAGA 58.822 36.000 0.00 0.00 0.00 3.27
111 112 3.391296 GAGACATGGTGGCCTCCTTTATA 59.609 47.826 23.90 4.31 0.00 0.98
124 125 1.349026 CCACTTGACCTGAGACATGGT 59.651 52.381 0.00 0.00 39.60 3.55
125 126 1.625315 TCCACTTGACCTGAGACATGG 59.375 52.381 0.00 0.00 0.00 3.66
126 127 3.407424 TTCCACTTGACCTGAGACATG 57.593 47.619 0.00 0.00 0.00 3.21
178 179 0.746659 CCAAAATCCAATCCCCTCGC 59.253 55.000 0.00 0.00 0.00 5.03
184 186 1.284313 TTGCCCCCAAAATCCAATCC 58.716 50.000 0.00 0.00 0.00 3.01
283 285 6.540995 AGATATGATGGCATCACTTTTAGCT 58.459 36.000 30.96 22.83 43.01 3.32
284 286 6.814506 AGATATGATGGCATCACTTTTAGC 57.185 37.500 30.96 21.11 43.01 3.09
320 322 0.106819 ATGCATGCAAGAGGGGAGTC 60.107 55.000 26.68 0.00 0.00 3.36
346 350 9.270640 GTATCTTCAAGCATCAGATAACAAGAT 57.729 33.333 0.00 0.00 32.52 2.40
347 351 8.260114 TGTATCTTCAAGCATCAGATAACAAGA 58.740 33.333 0.00 0.00 32.52 3.02
348 352 8.429493 TGTATCTTCAAGCATCAGATAACAAG 57.571 34.615 0.00 0.00 32.52 3.16
350 354 7.823799 TGTTGTATCTTCAAGCATCAGATAACA 59.176 33.333 0.00 0.00 32.52 2.41
351 355 8.201554 TGTTGTATCTTCAAGCATCAGATAAC 57.798 34.615 0.00 0.00 32.52 1.89
352 356 7.011763 GCTGTTGTATCTTCAAGCATCAGATAA 59.988 37.037 6.01 0.00 32.52 1.75
355 359 4.633126 GCTGTTGTATCTTCAAGCATCAGA 59.367 41.667 6.01 0.00 33.12 3.27
356 360 4.634883 AGCTGTTGTATCTTCAAGCATCAG 59.365 41.667 0.00 0.00 33.96 2.90
357 361 4.582869 AGCTGTTGTATCTTCAAGCATCA 58.417 39.130 0.00 0.00 0.00 3.07
358 362 5.236047 CCTAGCTGTTGTATCTTCAAGCATC 59.764 44.000 0.00 0.00 0.00 3.91
360 364 4.507710 CCTAGCTGTTGTATCTTCAAGCA 58.492 43.478 0.00 0.00 0.00 3.91
361 365 3.311048 GCCTAGCTGTTGTATCTTCAAGC 59.689 47.826 0.00 0.00 0.00 4.01
362 366 4.507710 TGCCTAGCTGTTGTATCTTCAAG 58.492 43.478 0.00 0.00 0.00 3.02
363 367 4.551702 TGCCTAGCTGTTGTATCTTCAA 57.448 40.909 0.00 0.00 0.00 2.69
364 368 4.253685 GTTGCCTAGCTGTTGTATCTTCA 58.746 43.478 0.00 0.00 0.00 3.02
365 369 4.093556 GTGTTGCCTAGCTGTTGTATCTTC 59.906 45.833 0.00 0.00 0.00 2.87
366 370 4.003648 GTGTTGCCTAGCTGTTGTATCTT 58.996 43.478 0.00 0.00 0.00 2.40
368 372 2.348666 CGTGTTGCCTAGCTGTTGTATC 59.651 50.000 0.00 0.00 0.00 2.24
483 501 1.720107 CTGCATGATTAAGCGCGCG 60.720 57.895 28.44 28.44 0.00 6.86
484 502 1.369689 CCTGCATGATTAAGCGCGC 60.370 57.895 26.66 26.66 0.00 6.86
485 503 1.369689 GCCTGCATGATTAAGCGCG 60.370 57.895 0.00 0.00 0.00 6.86
486 504 1.369689 CGCCTGCATGATTAAGCGC 60.370 57.895 0.00 0.00 36.89 5.92
487 505 4.907946 CGCCTGCATGATTAAGCG 57.092 55.556 0.00 0.00 37.39 4.68
502 520 3.672867 CACATGTTAAAATGGTCCAACGC 59.327 43.478 10.41 0.00 31.46 4.84
623 645 5.521010 CAGTCACAGAACATTGCACATTTTT 59.479 36.000 0.00 0.00 0.00 1.94
629 651 3.698029 AACAGTCACAGAACATTGCAC 57.302 42.857 0.00 0.00 0.00 4.57
651 696 2.205022 TTTCACATCTCCTTGGCAGG 57.795 50.000 0.00 0.00 42.50 4.85
659 704 9.606631 ATTACAGTTCTAAGATTTCACATCTCC 57.393 33.333 0.00 0.00 0.00 3.71
687 732 5.066117 CGTAGTGAACTACCTGCAGAAGATA 59.934 44.000 17.39 1.03 44.46 1.98
694 739 4.530710 ATTTCGTAGTGAACTACCTGCA 57.469 40.909 13.62 0.00 44.46 4.41
698 743 6.237411 GCGTTCTAATTTCGTAGTGAACTACC 60.237 42.308 13.62 0.00 44.46 3.18
701 746 5.224888 TGCGTTCTAATTTCGTAGTGAACT 58.775 37.500 0.00 0.00 35.97 3.01
702 747 5.505165 TGCGTTCTAATTTCGTAGTGAAC 57.495 39.130 0.00 0.00 35.97 3.18
709 754 3.197434 GCCTTTGCGTTCTAATTTCGT 57.803 42.857 0.00 0.00 0.00 3.85
789 838 6.197842 GCGTGTATATATATAGTGCCCGTTTC 59.802 42.308 2.53 0.00 0.00 2.78
803 852 3.259064 GCCGTTGGATGCGTGTATATAT 58.741 45.455 0.00 0.00 0.00 0.86
804 853 2.610976 GGCCGTTGGATGCGTGTATATA 60.611 50.000 0.00 0.00 0.00 0.86
845 894 3.459063 AAGCGGGGCGAGTAGGTC 61.459 66.667 0.00 0.00 0.00 3.85
858 907 9.249457 TCTTATGATTTATACAAGAGACAAGCG 57.751 33.333 0.00 0.00 0.00 4.68
881 930 0.329931 TCAGAGGAGACGGAGCTCTT 59.670 55.000 14.64 0.14 35.26 2.85
883 932 0.678366 TGTCAGAGGAGACGGAGCTC 60.678 60.000 4.71 4.71 41.41 4.09
886 935 0.609406 TGGTGTCAGAGGAGACGGAG 60.609 60.000 0.00 0.00 41.41 4.63
887 936 0.178973 TTGGTGTCAGAGGAGACGGA 60.179 55.000 0.00 0.00 41.41 4.69
888 937 0.244994 CTTGGTGTCAGAGGAGACGG 59.755 60.000 0.00 0.00 41.41 4.79
890 939 2.611722 GCTTCTTGGTGTCAGAGGAGAC 60.612 54.545 0.00 0.00 36.62 3.36
929 981 0.727457 CACTATGCTCGGCTCGATCG 60.727 60.000 9.36 9.36 34.61 3.69
930 982 0.387878 CCACTATGCTCGGCTCGATC 60.388 60.000 0.00 0.00 34.61 3.69
931 983 1.109920 ACCACTATGCTCGGCTCGAT 61.110 55.000 0.00 0.00 34.61 3.59
932 984 1.753078 ACCACTATGCTCGGCTCGA 60.753 57.895 0.00 0.00 0.00 4.04
933 985 1.589993 CACCACTATGCTCGGCTCG 60.590 63.158 0.00 0.00 0.00 5.03
934 986 1.884926 GCACCACTATGCTCGGCTC 60.885 63.158 0.00 0.00 42.62 4.70
935 987 2.187946 GCACCACTATGCTCGGCT 59.812 61.111 0.00 0.00 42.62 5.52
962 1014 1.219124 CGCCAGAGCACACCACTAT 59.781 57.895 0.00 0.00 39.83 2.12
979 1031 4.771356 ACCGACGGATCACACGCG 62.771 66.667 23.38 3.53 34.00 6.01
1187 1240 2.120909 TAGTACGGGTACTGGCCGC 61.121 63.158 19.10 0.00 45.25 6.53
1487 1549 6.427547 CCAAAACCAAAATACTTCATGCATGT 59.572 34.615 25.43 9.95 0.00 3.21
1499 1561 2.693591 TCACGTGGCCAAAACCAAAATA 59.306 40.909 17.00 0.00 42.70 1.40
1501 1563 0.895530 TCACGTGGCCAAAACCAAAA 59.104 45.000 17.00 0.00 42.70 2.44
1513 1575 2.179547 TGCTTGTGCTGTCACGTGG 61.180 57.895 17.00 0.08 46.01 4.94
1571 1633 1.374505 CAATGGGCCTGCAAAACGG 60.375 57.895 4.53 0.00 0.00 4.44
1726 1788 4.034258 CTGCTGCCGCTGTGGTTG 62.034 66.667 9.31 3.39 41.21 3.77
2222 2284 2.749076 TCTTCAAATCCCGTCATGCTTG 59.251 45.455 0.00 0.00 0.00 4.01
2231 2293 4.096382 CCTAATGTGGTTCTTCAAATCCCG 59.904 45.833 0.00 0.00 0.00 5.14
2241 2303 4.841246 AGAGTTGAGACCTAATGTGGTTCT 59.159 41.667 0.00 0.00 41.00 3.01
2242 2304 5.153950 AGAGTTGAGACCTAATGTGGTTC 57.846 43.478 0.00 0.00 41.00 3.62
2244 2306 4.160329 TGAGAGTTGAGACCTAATGTGGT 58.840 43.478 0.00 0.00 44.10 4.16
2271 2341 6.989169 TCTTCTTTCTCTTCTTTTGAGTGGAG 59.011 38.462 0.00 0.00 33.59 3.86
2296 2366 3.317711 TGTGGTTGCAACTTCAAATCGAT 59.682 39.130 27.64 0.00 0.00 3.59
2298 2368 2.788786 GTGTGGTTGCAACTTCAAATCG 59.211 45.455 27.64 0.00 0.00 3.34
2315 2385 6.018425 GGCACATAATCTAGAATGTCAGTGTG 60.018 42.308 7.03 10.61 34.12 3.82
2369 2439 8.519526 TCCATGATTAAACATTACAGTGGAAAC 58.480 33.333 0.00 0.00 0.00 2.78
2387 2457 3.003394 TGCGTTCAATCCTCCATGATT 57.997 42.857 0.00 0.00 35.36 2.57
2434 2504 1.195115 TCTTGCGGCATTCTAGGAGT 58.805 50.000 2.28 0.00 0.00 3.85
2467 2537 8.770010 TTACCCTTAATTTTCCTGAACTGAAA 57.230 30.769 0.00 0.00 0.00 2.69
2505 2575 2.754465 TCCGTATGTGGACCCTGTAAT 58.246 47.619 0.00 0.00 31.53 1.89
2507 2577 2.234896 TTCCGTATGTGGACCCTGTA 57.765 50.000 0.00 0.00 37.89 2.74
2508 2578 1.354101 TTTCCGTATGTGGACCCTGT 58.646 50.000 0.00 0.00 37.89 4.00
2509 2579 2.483014 TTTTCCGTATGTGGACCCTG 57.517 50.000 0.00 0.00 37.89 4.45
2511 2581 2.506444 TGTTTTTCCGTATGTGGACCC 58.494 47.619 0.00 0.00 37.89 4.46
2516 2588 6.668323 AGAAAGTCATGTTTTTCCGTATGTG 58.332 36.000 15.93 0.00 34.60 3.21
2527 2599 6.757897 TCTTGTGTTGAGAAAGTCATGTTT 57.242 33.333 0.00 0.00 34.17 2.83
2535 2607 3.629398 ACCTGCTTCTTGTGTTGAGAAAG 59.371 43.478 0.00 0.00 33.10 2.62
2552 2624 1.519408 TACGAGCAAAAGGAACCTGC 58.481 50.000 0.00 0.00 36.29 4.85
2565 2638 7.961283 TCGAAGTATGTAACATGATATACGAGC 59.039 37.037 0.00 0.00 32.67 5.03
2605 2679 6.543831 GCAATGGTAACCTGATCATAAGACTT 59.456 38.462 0.00 0.00 0.00 3.01
2829 2903 1.202545 GGTGGAGAAGATAAGGCGGAC 60.203 57.143 0.00 0.00 0.00 4.79
2889 2963 4.375405 CGCGCTCTTATTGATATCACACAC 60.375 45.833 4.48 0.00 0.00 3.82
3089 3163 0.036732 AGAATGGGCGCTGTCTTGAA 59.963 50.000 7.64 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.