Multiple sequence alignment - TraesCS7D01G449200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G449200 chr7D 100.000 2658 0 0 1 2658 568464454 568461797 0.000000e+00 4909.0
1 TraesCS7D01G449200 chr7D 84.932 1480 185 29 533 2003 568324239 568322789 0.000000e+00 1463.0
2 TraesCS7D01G449200 chr7D 81.928 1245 161 38 604 1812 568185804 568184588 0.000000e+00 994.0
3 TraesCS7D01G449200 chr7D 86.990 392 49 2 2261 2651 267760386 267759996 8.730000e-120 440.0
4 TraesCS7D01G449200 chr7D 85.079 315 41 6 210 520 568324492 568324180 1.540000e-82 316.0
5 TraesCS7D01G449200 chr7D 85.227 264 39 0 2001 2264 412868709 412868972 3.370000e-69 272.0
6 TraesCS7D01G449200 chr7D 81.105 344 56 6 2002 2337 370852981 370852639 1.570000e-67 267.0
7 TraesCS7D01G449200 chr7D 85.119 168 24 1 1 168 568236694 568236528 1.270000e-38 171.0
8 TraesCS7D01G449200 chr7D 84.932 73 8 3 165 235 136984146 136984075 1.320000e-08 71.3
9 TraesCS7D01G449200 chr7B 84.232 1503 193 33 516 2003 623934336 623932863 0.000000e+00 1423.0
10 TraesCS7D01G449200 chr7B 79.493 1380 208 44 472 1812 623271399 623270056 0.000000e+00 911.0
11 TraesCS7D01G449200 chr7B 81.013 948 124 32 477 1376 623102567 623101628 0.000000e+00 702.0
12 TraesCS7D01G449200 chr7B 80.444 946 136 23 475 1376 623523388 623522448 0.000000e+00 676.0
13 TraesCS7D01G449200 chr7B 80.830 506 63 12 1111 1611 622832941 622832465 1.500000e-97 366.0
14 TraesCS7D01G449200 chr7B 84.661 339 42 9 210 542 623934598 623934264 1.970000e-86 329.0
15 TraesCS7D01G449200 chr7B 86.145 166 20 3 1 165 623486370 623486207 2.720000e-40 176.0
16 TraesCS7D01G449200 chr7A 84.573 1439 175 34 576 2000 656981995 656983400 0.000000e+00 1384.0
17 TraesCS7D01G449200 chr7A 79.692 714 95 19 689 1376 654503668 654502979 1.110000e-128 470.0
18 TraesCS7D01G449200 chr7A 85.664 286 36 5 210 493 656956961 656957243 2.000000e-76 296.0
19 TraesCS7D01G449200 chr6B 89.313 393 40 2 2261 2653 474117513 474117123 2.380000e-135 492.0
20 TraesCS7D01G449200 chr6B 80.072 276 48 7 1993 2263 340006367 340006094 5.800000e-47 198.0
21 TraesCS7D01G449200 chr2B 84.800 500 64 6 2169 2658 483190291 483189794 2.380000e-135 492.0
22 TraesCS7D01G449200 chr2B 77.778 414 85 6 2006 2416 183563673 183563264 5.680000e-62 248.0
23 TraesCS7D01G449200 chr2B 85.135 74 8 3 163 234 710325626 710325554 3.670000e-09 73.1
24 TraesCS7D01G449200 chr2B 93.617 47 3 0 163 209 522090540 522090586 1.320000e-08 71.3
25 TraesCS7D01G449200 chr3D 84.008 494 67 5 2169 2652 302951925 302952416 5.180000e-127 464.0
26 TraesCS7D01G449200 chr6A 88.041 393 44 3 2261 2652 126494289 126494679 1.860000e-126 462.0
27 TraesCS7D01G449200 chr6A 85.714 70 7 2 167 234 502715133 502715201 1.320000e-08 71.3
28 TraesCS7D01G449200 chr4D 83.401 494 72 5 2169 2653 338655747 338655255 1.450000e-122 449.0
29 TraesCS7D01G449200 chr4D 84.932 73 8 3 164 234 494787193 494787264 1.320000e-08 71.3
30 TraesCS7D01G449200 chr5B 82.051 546 78 17 2116 2653 307449501 307450034 5.220000e-122 448.0
31 TraesCS7D01G449200 chr5B 83.164 493 75 3 2169 2653 241664346 241663854 6.750000e-121 444.0
32 TraesCS7D01G449200 chr3A 86.582 395 52 1 2264 2658 462077243 462076850 4.060000e-118 435.0
33 TraesCS7D01G449200 chr3A 77.933 358 63 10 2002 2348 105695886 105695534 2.680000e-50 209.0
34 TraesCS7D01G449200 chr3A 85.507 69 8 2 167 234 420334751 420334684 1.320000e-08 71.3
35 TraesCS7D01G449200 chr2D 79.669 423 74 11 2006 2423 281552445 281552860 7.200000e-76 294.0
36 TraesCS7D01G449200 chr1D 82.544 338 48 6 2004 2332 257020957 257021292 1.200000e-73 287.0
37 TraesCS7D01G449200 chr3B 80.102 392 67 6 2006 2388 442641685 442642074 5.600000e-72 281.0
38 TraesCS7D01G449200 chr3B 85.057 261 37 2 2005 2264 279856488 279856747 5.640000e-67 265.0
39 TraesCS7D01G449200 chr3B 80.000 330 55 6 1987 2308 314325785 314325459 1.590000e-57 233.0
40 TraesCS7D01G449200 chr1A 78.505 428 75 14 2006 2421 295724307 295723885 5.640000e-67 265.0
41 TraesCS7D01G449200 chrUn 92.727 55 4 0 161 215 15903277 15903331 2.190000e-11 80.5
42 TraesCS7D01G449200 chrUn 92.727 55 3 1 167 220 88589974 88589920 7.890000e-11 78.7
43 TraesCS7D01G449200 chr2A 92.727 55 4 0 161 215 2479752 2479806 2.190000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G449200 chr7D 568461797 568464454 2657 True 4909.0 4909 100.0000 1 2658 1 chr7D.!!$R6 2657
1 TraesCS7D01G449200 chr7D 568184588 568185804 1216 True 994.0 994 81.9280 604 1812 1 chr7D.!!$R4 1208
2 TraesCS7D01G449200 chr7D 568322789 568324492 1703 True 889.5 1463 85.0055 210 2003 2 chr7D.!!$R7 1793
3 TraesCS7D01G449200 chr7B 623270056 623271399 1343 True 911.0 911 79.4930 472 1812 1 chr7B.!!$R3 1340
4 TraesCS7D01G449200 chr7B 623932863 623934598 1735 True 876.0 1423 84.4465 210 2003 2 chr7B.!!$R6 1793
5 TraesCS7D01G449200 chr7B 623101628 623102567 939 True 702.0 702 81.0130 477 1376 1 chr7B.!!$R2 899
6 TraesCS7D01G449200 chr7B 623522448 623523388 940 True 676.0 676 80.4440 475 1376 1 chr7B.!!$R5 901
7 TraesCS7D01G449200 chr7A 656981995 656983400 1405 False 1384.0 1384 84.5730 576 2000 1 chr7A.!!$F2 1424
8 TraesCS7D01G449200 chr7A 654502979 654503668 689 True 470.0 470 79.6920 689 1376 1 chr7A.!!$R1 687
9 TraesCS7D01G449200 chr5B 307449501 307450034 533 False 448.0 448 82.0510 2116 2653 1 chr5B.!!$F1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.110486 GTTCCTCCAAGCCAAGTCCA 59.89 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2133 0.104855 TTAGCAGCATCCCGCAGTAG 59.895 55.0 0.0 0.0 46.13 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.682893 GCTAGGAACAGGCGTGATG 58.317 57.895 14.38 0.00 0.00 3.07
19 20 0.175760 GCTAGGAACAGGCGTGATGA 59.824 55.000 14.38 0.00 0.00 2.92
20 21 1.405526 GCTAGGAACAGGCGTGATGAA 60.406 52.381 14.38 0.00 0.00 2.57
21 22 2.743183 GCTAGGAACAGGCGTGATGAAT 60.743 50.000 14.38 0.00 0.00 2.57
22 23 1.742761 AGGAACAGGCGTGATGAATG 58.257 50.000 14.38 0.00 0.00 2.67
23 24 1.003580 AGGAACAGGCGTGATGAATGT 59.996 47.619 14.38 0.00 0.00 2.71
24 25 1.812571 GGAACAGGCGTGATGAATGTT 59.187 47.619 14.38 0.00 36.83 2.71
25 26 2.414559 GGAACAGGCGTGATGAATGTTG 60.415 50.000 14.38 0.00 34.41 3.33
26 27 2.183478 ACAGGCGTGATGAATGTTGA 57.817 45.000 14.38 0.00 0.00 3.18
27 28 2.079158 ACAGGCGTGATGAATGTTGAG 58.921 47.619 14.38 0.00 0.00 3.02
28 29 2.289631 ACAGGCGTGATGAATGTTGAGA 60.290 45.455 14.38 0.00 0.00 3.27
29 30 2.743664 CAGGCGTGATGAATGTTGAGAA 59.256 45.455 0.00 0.00 0.00 2.87
30 31 3.005554 AGGCGTGATGAATGTTGAGAAG 58.994 45.455 0.00 0.00 0.00 2.85
31 32 2.096496 GGCGTGATGAATGTTGAGAAGG 59.904 50.000 0.00 0.00 0.00 3.46
32 33 2.744202 GCGTGATGAATGTTGAGAAGGT 59.256 45.455 0.00 0.00 0.00 3.50
33 34 3.181516 GCGTGATGAATGTTGAGAAGGTC 60.182 47.826 0.00 0.00 0.00 3.85
34 35 3.996363 CGTGATGAATGTTGAGAAGGTCA 59.004 43.478 0.00 0.00 0.00 4.02
35 36 4.092529 CGTGATGAATGTTGAGAAGGTCAG 59.907 45.833 0.00 0.00 36.21 3.51
36 37 4.394300 GTGATGAATGTTGAGAAGGTCAGG 59.606 45.833 0.00 0.00 36.21 3.86
37 38 3.423539 TGAATGTTGAGAAGGTCAGGG 57.576 47.619 0.00 0.00 36.21 4.45
38 39 2.978978 TGAATGTTGAGAAGGTCAGGGA 59.021 45.455 0.00 0.00 36.21 4.20
39 40 3.008375 TGAATGTTGAGAAGGTCAGGGAG 59.992 47.826 0.00 0.00 36.21 4.30
40 41 2.398754 TGTTGAGAAGGTCAGGGAGA 57.601 50.000 0.00 0.00 36.21 3.71
41 42 2.907892 TGTTGAGAAGGTCAGGGAGAT 58.092 47.619 0.00 0.00 36.21 2.75
42 43 3.251484 TGTTGAGAAGGTCAGGGAGATT 58.749 45.455 0.00 0.00 36.21 2.40
43 44 3.652869 TGTTGAGAAGGTCAGGGAGATTT 59.347 43.478 0.00 0.00 36.21 2.17
44 45 4.844085 TGTTGAGAAGGTCAGGGAGATTTA 59.156 41.667 0.00 0.00 36.21 1.40
45 46 5.179533 GTTGAGAAGGTCAGGGAGATTTAC 58.820 45.833 0.00 0.00 36.21 2.01
46 47 4.425772 TGAGAAGGTCAGGGAGATTTACA 58.574 43.478 0.00 0.00 0.00 2.41
47 48 5.032846 TGAGAAGGTCAGGGAGATTTACAT 58.967 41.667 0.00 0.00 0.00 2.29
48 49 5.488919 TGAGAAGGTCAGGGAGATTTACATT 59.511 40.000 0.00 0.00 0.00 2.71
49 50 5.749462 AGAAGGTCAGGGAGATTTACATTG 58.251 41.667 0.00 0.00 0.00 2.82
50 51 4.510167 AGGTCAGGGAGATTTACATTGG 57.490 45.455 0.00 0.00 0.00 3.16
51 52 3.203040 AGGTCAGGGAGATTTACATTGGG 59.797 47.826 0.00 0.00 0.00 4.12
52 53 3.202151 GGTCAGGGAGATTTACATTGGGA 59.798 47.826 0.00 0.00 0.00 4.37
53 54 4.200092 GTCAGGGAGATTTACATTGGGAC 58.800 47.826 0.00 0.00 0.00 4.46
54 55 4.080299 GTCAGGGAGATTTACATTGGGACT 60.080 45.833 0.00 0.00 0.00 3.85
55 56 4.080356 TCAGGGAGATTTACATTGGGACTG 60.080 45.833 0.00 0.00 0.00 3.51
56 57 4.080356 CAGGGAGATTTACATTGGGACTGA 60.080 45.833 0.00 0.00 0.00 3.41
57 58 4.728860 AGGGAGATTTACATTGGGACTGAT 59.271 41.667 0.00 0.00 0.00 2.90
58 59 5.194537 AGGGAGATTTACATTGGGACTGATT 59.805 40.000 0.00 0.00 0.00 2.57
59 60 5.893824 GGGAGATTTACATTGGGACTGATTT 59.106 40.000 0.00 0.00 0.00 2.17
60 61 7.060421 GGGAGATTTACATTGGGACTGATTTA 58.940 38.462 0.00 0.00 0.00 1.40
61 62 7.725844 GGGAGATTTACATTGGGACTGATTTAT 59.274 37.037 0.00 0.00 0.00 1.40
62 63 8.787852 GGAGATTTACATTGGGACTGATTTATC 58.212 37.037 0.00 0.00 0.00 1.75
63 64 9.342308 GAGATTTACATTGGGACTGATTTATCA 57.658 33.333 0.00 0.00 35.16 2.15
64 65 9.872684 AGATTTACATTGGGACTGATTTATCAT 57.127 29.630 0.00 0.00 36.02 2.45
65 66 9.903682 GATTTACATTGGGACTGATTTATCATG 57.096 33.333 0.00 0.00 36.02 3.07
66 67 8.821686 TTTACATTGGGACTGATTTATCATGT 57.178 30.769 0.00 0.00 36.02 3.21
67 68 6.704289 ACATTGGGACTGATTTATCATGTG 57.296 37.500 0.00 0.00 36.02 3.21
68 69 5.595542 ACATTGGGACTGATTTATCATGTGG 59.404 40.000 0.00 0.00 36.02 4.17
69 70 3.554934 TGGGACTGATTTATCATGTGGC 58.445 45.455 0.00 0.00 36.02 5.01
70 71 3.053768 TGGGACTGATTTATCATGTGGCA 60.054 43.478 0.00 0.00 36.02 4.92
71 72 4.147321 GGGACTGATTTATCATGTGGCAT 58.853 43.478 0.00 0.00 36.02 4.40
72 73 5.163109 TGGGACTGATTTATCATGTGGCATA 60.163 40.000 0.00 0.00 36.02 3.14
73 74 5.413833 GGGACTGATTTATCATGTGGCATAG 59.586 44.000 0.00 0.00 36.02 2.23
74 75 6.000219 GGACTGATTTATCATGTGGCATAGT 59.000 40.000 0.00 0.00 36.02 2.12
75 76 6.488006 GGACTGATTTATCATGTGGCATAGTT 59.512 38.462 0.00 0.00 36.02 2.24
76 77 7.308229 GGACTGATTTATCATGTGGCATAGTTC 60.308 40.741 0.00 0.00 36.02 3.01
77 78 6.488006 ACTGATTTATCATGTGGCATAGTTCC 59.512 38.462 0.00 0.00 36.02 3.62
78 79 6.604171 TGATTTATCATGTGGCATAGTTCCT 58.396 36.000 0.00 0.00 0.00 3.36
79 80 6.712095 TGATTTATCATGTGGCATAGTTCCTC 59.288 38.462 0.00 0.00 0.00 3.71
80 81 3.498774 ATCATGTGGCATAGTTCCTCC 57.501 47.619 0.00 0.00 0.00 4.30
81 82 2.195727 TCATGTGGCATAGTTCCTCCA 58.804 47.619 0.00 0.00 0.00 3.86
82 83 2.575735 TCATGTGGCATAGTTCCTCCAA 59.424 45.455 0.00 0.00 0.00 3.53
83 84 2.787473 TGTGGCATAGTTCCTCCAAG 57.213 50.000 0.00 0.00 0.00 3.61
84 85 1.340017 TGTGGCATAGTTCCTCCAAGC 60.340 52.381 0.00 0.00 0.00 4.01
85 86 0.255890 TGGCATAGTTCCTCCAAGCC 59.744 55.000 0.00 0.00 40.93 4.35
86 87 0.255890 GGCATAGTTCCTCCAAGCCA 59.744 55.000 0.00 0.00 40.29 4.75
87 88 1.340991 GGCATAGTTCCTCCAAGCCAA 60.341 52.381 0.00 0.00 40.29 4.52
88 89 2.019984 GCATAGTTCCTCCAAGCCAAG 58.980 52.381 0.00 0.00 0.00 3.61
89 90 2.619074 GCATAGTTCCTCCAAGCCAAGT 60.619 50.000 0.00 0.00 0.00 3.16
90 91 3.274288 CATAGTTCCTCCAAGCCAAGTC 58.726 50.000 0.00 0.00 0.00 3.01
91 92 0.402121 AGTTCCTCCAAGCCAAGTCC 59.598 55.000 0.00 0.00 0.00 3.85
92 93 0.110486 GTTCCTCCAAGCCAAGTCCA 59.890 55.000 0.00 0.00 0.00 4.02
93 94 1.075601 TTCCTCCAAGCCAAGTCCAT 58.924 50.000 0.00 0.00 0.00 3.41
94 95 0.329261 TCCTCCAAGCCAAGTCCATG 59.671 55.000 0.00 0.00 0.00 3.66
95 96 0.329261 CCTCCAAGCCAAGTCCATGA 59.671 55.000 0.00 0.00 0.00 3.07
96 97 1.681166 CCTCCAAGCCAAGTCCATGAG 60.681 57.143 0.00 0.00 0.00 2.90
97 98 1.280133 CTCCAAGCCAAGTCCATGAGA 59.720 52.381 0.00 0.00 0.00 3.27
98 99 1.918262 TCCAAGCCAAGTCCATGAGAT 59.082 47.619 0.00 0.00 0.00 2.75
99 100 2.022195 CCAAGCCAAGTCCATGAGATG 58.978 52.381 0.00 0.00 0.00 2.90
100 101 2.356432 CCAAGCCAAGTCCATGAGATGA 60.356 50.000 0.00 0.00 0.00 2.92
101 102 2.943690 CAAGCCAAGTCCATGAGATGAG 59.056 50.000 0.00 0.00 0.00 2.90
102 103 2.475155 AGCCAAGTCCATGAGATGAGA 58.525 47.619 0.00 0.00 0.00 3.27
103 104 3.047115 AGCCAAGTCCATGAGATGAGAT 58.953 45.455 0.00 0.00 0.00 2.75
104 105 3.071312 AGCCAAGTCCATGAGATGAGATC 59.929 47.826 0.00 0.00 0.00 2.75
105 106 3.651206 CCAAGTCCATGAGATGAGATCG 58.349 50.000 0.00 0.00 0.00 3.69
106 107 3.320256 CCAAGTCCATGAGATGAGATCGA 59.680 47.826 0.00 0.00 0.00 3.59
107 108 4.548494 CAAGTCCATGAGATGAGATCGAG 58.452 47.826 0.00 0.00 0.00 4.04
108 109 4.097551 AGTCCATGAGATGAGATCGAGA 57.902 45.455 0.00 0.00 0.00 4.04
109 110 4.074259 AGTCCATGAGATGAGATCGAGAG 58.926 47.826 0.00 0.00 0.00 3.20
126 127 4.392921 GAGAGAATCGATGGACTCCAAA 57.607 45.455 17.75 0.00 42.67 3.28
127 128 4.954875 GAGAGAATCGATGGACTCCAAAT 58.045 43.478 17.75 0.00 42.67 2.32
128 129 5.363939 GAGAGAATCGATGGACTCCAAATT 58.636 41.667 17.75 2.92 42.67 1.82
129 130 5.121811 AGAGAATCGATGGACTCCAAATTG 58.878 41.667 17.75 0.00 42.67 2.32
130 131 4.848357 AGAATCGATGGACTCCAAATTGT 58.152 39.130 0.66 0.00 36.95 2.71
131 132 4.878397 AGAATCGATGGACTCCAAATTGTC 59.122 41.667 0.66 0.00 36.95 3.18
132 133 9.942131 AGAGAATCGATGGACTCCAAATTGTCC 62.942 44.444 17.75 5.87 46.09 4.02
135 136 3.948735 GGACTCCAAATTGTCCGGA 57.051 52.632 0.00 0.00 42.51 5.14
143 144 5.880164 TCCAAATTGTCCGGAGATATACA 57.120 39.130 3.06 0.00 0.00 2.29
144 145 6.241882 TCCAAATTGTCCGGAGATATACAA 57.758 37.500 3.06 5.33 36.37 2.41
145 146 6.654959 TCCAAATTGTCCGGAGATATACAAA 58.345 36.000 3.06 0.00 35.63 2.83
146 147 6.540914 TCCAAATTGTCCGGAGATATACAAAC 59.459 38.462 3.06 0.00 35.63 2.93
147 148 6.542370 CCAAATTGTCCGGAGATATACAAACT 59.458 38.462 3.06 0.00 35.63 2.66
148 149 7.713507 CCAAATTGTCCGGAGATATACAAACTA 59.286 37.037 3.06 0.00 35.63 2.24
149 150 8.765219 CAAATTGTCCGGAGATATACAAACTAG 58.235 37.037 3.06 0.00 35.63 2.57
150 151 6.401047 TTGTCCGGAGATATACAAACTAGG 57.599 41.667 3.06 0.00 0.00 3.02
151 152 5.452255 TGTCCGGAGATATACAAACTAGGT 58.548 41.667 3.06 0.00 0.00 3.08
152 153 5.895534 TGTCCGGAGATATACAAACTAGGTT 59.104 40.000 3.06 0.00 0.00 3.50
153 154 6.183360 TGTCCGGAGATATACAAACTAGGTTG 60.183 42.308 19.11 19.11 34.52 3.77
154 155 5.895534 TCCGGAGATATACAAACTAGGTTGT 59.104 40.000 28.16 28.16 43.95 3.32
155 156 5.983720 CCGGAGATATACAAACTAGGTTGTG 59.016 44.000 31.85 14.83 41.75 3.33
156 157 5.983720 CGGAGATATACAAACTAGGTTGTGG 59.016 44.000 31.85 5.60 41.75 4.17
157 158 5.758784 GGAGATATACAAACTAGGTTGTGGC 59.241 44.000 31.85 18.76 41.75 5.01
158 159 6.408206 GGAGATATACAAACTAGGTTGTGGCT 60.408 42.308 31.85 22.37 41.75 4.75
159 160 7.201974 GGAGATATACAAACTAGGTTGTGGCTA 60.202 40.741 31.85 20.85 41.75 3.93
160 161 7.727181 AGATATACAAACTAGGTTGTGGCTAG 58.273 38.462 31.85 3.35 41.75 3.42
161 162 3.418684 ACAAACTAGGTTGTGGCTAGG 57.581 47.619 25.15 0.00 40.22 3.02
162 163 2.709397 ACAAACTAGGTTGTGGCTAGGT 59.291 45.455 25.15 0.00 40.22 3.08
163 164 3.137728 ACAAACTAGGTTGTGGCTAGGTT 59.862 43.478 25.15 0.00 40.22 3.50
164 165 4.348754 ACAAACTAGGTTGTGGCTAGGTTA 59.651 41.667 25.15 0.00 40.22 2.85
165 166 5.163174 ACAAACTAGGTTGTGGCTAGGTTAA 60.163 40.000 25.15 0.00 40.22 2.01
166 167 5.774102 AACTAGGTTGTGGCTAGGTTAAT 57.226 39.130 0.00 0.00 0.00 1.40
167 168 6.879367 AACTAGGTTGTGGCTAGGTTAATA 57.121 37.500 0.00 0.00 0.00 0.98
168 169 6.231258 ACTAGGTTGTGGCTAGGTTAATAC 57.769 41.667 0.00 0.00 0.00 1.89
169 170 5.962641 ACTAGGTTGTGGCTAGGTTAATACT 59.037 40.000 0.00 0.00 0.00 2.12
170 171 5.354842 AGGTTGTGGCTAGGTTAATACTC 57.645 43.478 0.00 0.00 0.00 2.59
171 172 4.163649 AGGTTGTGGCTAGGTTAATACTCC 59.836 45.833 0.00 0.00 0.00 3.85
172 173 4.449131 GTTGTGGCTAGGTTAATACTCCC 58.551 47.826 0.00 0.00 0.00 4.30
173 174 4.003584 TGTGGCTAGGTTAATACTCCCT 57.996 45.455 0.00 0.00 0.00 4.20
174 175 3.965347 TGTGGCTAGGTTAATACTCCCTC 59.035 47.826 0.00 0.00 0.00 4.30
175 176 3.324268 GTGGCTAGGTTAATACTCCCTCC 59.676 52.174 0.00 0.00 0.00 4.30
176 177 2.561858 GGCTAGGTTAATACTCCCTCCG 59.438 54.545 0.00 0.00 0.00 4.63
177 178 3.229293 GCTAGGTTAATACTCCCTCCGT 58.771 50.000 0.00 0.00 0.00 4.69
178 179 4.401925 GCTAGGTTAATACTCCCTCCGTA 58.598 47.826 0.00 0.00 0.00 4.02
179 180 4.829492 GCTAGGTTAATACTCCCTCCGTAA 59.171 45.833 0.00 0.00 0.00 3.18
180 181 5.302823 GCTAGGTTAATACTCCCTCCGTAAA 59.697 44.000 0.00 0.00 0.00 2.01
181 182 5.866159 AGGTTAATACTCCCTCCGTAAAG 57.134 43.478 0.00 0.00 0.00 1.85
182 183 5.522641 AGGTTAATACTCCCTCCGTAAAGA 58.477 41.667 0.00 0.00 0.00 2.52
183 184 5.960202 AGGTTAATACTCCCTCCGTAAAGAA 59.040 40.000 0.00 0.00 0.00 2.52
184 185 6.441604 AGGTTAATACTCCCTCCGTAAAGAAA 59.558 38.462 0.00 0.00 0.00 2.52
185 186 7.126879 AGGTTAATACTCCCTCCGTAAAGAAAT 59.873 37.037 0.00 0.00 0.00 2.17
186 187 8.424133 GGTTAATACTCCCTCCGTAAAGAAATA 58.576 37.037 0.00 0.00 0.00 1.40
187 188 9.993454 GTTAATACTCCCTCCGTAAAGAAATAT 57.007 33.333 0.00 0.00 0.00 1.28
191 192 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
192 193 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
193 194 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
194 195 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
195 196 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
196 197 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
197 198 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
198 199 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
199 200 9.754382 TCCGTAAAGAAATATAAGAGCGTTTAT 57.246 29.630 2.15 2.15 0.00 1.40
205 206 9.765795 AAGAAATATAAGAGCGTTTATAGCACT 57.234 29.630 8.33 5.38 37.13 4.40
214 215 7.318141 AGAGCGTTTATAGCACTACTTAACAA 58.682 34.615 0.00 0.00 33.95 2.83
223 224 8.904099 ATAGCACTACTTAACAAAGAAACACT 57.096 30.769 0.00 0.00 0.00 3.55
226 227 7.120726 AGCACTACTTAACAAAGAAACACTGTT 59.879 33.333 0.00 0.00 37.13 3.16
227 228 8.392612 GCACTACTTAACAAAGAAACACTGTTA 58.607 33.333 0.00 0.00 35.09 2.41
276 277 7.067494 TCTCATCTATCTTGTCGAATCTGAACA 59.933 37.037 0.00 0.00 0.00 3.18
278 279 5.344066 TCTATCTTGTCGAATCTGAACAGC 58.656 41.667 0.00 0.00 0.00 4.40
302 303 7.898100 AGCTGGTTAGATTGGATCAGATCTATA 59.102 37.037 10.36 0.00 35.45 1.31
303 304 8.535335 GCTGGTTAGATTGGATCAGATCTATAA 58.465 37.037 10.36 4.44 35.45 0.98
314 315 8.572185 TGGATCAGATCTATAACTTTTCTCTCG 58.428 37.037 10.36 0.00 0.00 4.04
315 316 8.788806 GGATCAGATCTATAACTTTTCTCTCGA 58.211 37.037 10.36 0.00 0.00 4.04
316 317 9.607285 GATCAGATCTATAACTTTTCTCTCGAC 57.393 37.037 2.81 0.00 0.00 4.20
318 319 8.616942 TCAGATCTATAACTTTTCTCTCGACTG 58.383 37.037 0.00 0.00 0.00 3.51
319 320 8.616942 CAGATCTATAACTTTTCTCTCGACTGA 58.383 37.037 0.00 0.00 0.00 3.41
352 354 9.617523 AGTTTTCTTTTCAATTGAAACATCCAT 57.382 25.926 28.78 12.64 43.01 3.41
361 363 8.143673 TCAATTGAAACATCCATGGGATTTAA 57.856 30.769 13.02 5.76 39.79 1.52
428 431 7.841956 TGGTTTCTATTTTTCTGTTTTCACCA 58.158 30.769 0.00 0.00 0.00 4.17
460 463 9.529325 CGTGAAAATTATCTATGGAGTCTGTAA 57.471 33.333 0.00 0.00 0.00 2.41
624 697 3.720949 TCCACGTATCCTTTACCATCG 57.279 47.619 0.00 0.00 0.00 3.84
667 740 7.435192 GGATGCACCAAACTACATTTAATTAGC 59.565 37.037 0.00 0.00 38.79 3.09
687 763 4.589908 AGCAGTATCCTTTACCAACTTGG 58.410 43.478 6.24 6.24 45.02 3.61
786 867 6.211587 TGAAATGAACTAATCCATTGCCAG 57.788 37.500 0.00 0.00 33.70 4.85
834 917 9.410556 GTATCCATTGCCAATAATTTGATACAC 57.589 33.333 12.97 0.00 35.21 2.90
923 1006 9.140286 GAATAGTCCAATTAATCGATCGATGAA 57.860 33.333 29.99 28.03 34.70 2.57
929 1012 7.494298 TCCAATTAATCGATCGATGAACAAAGA 59.506 33.333 29.99 19.26 34.70 2.52
954 1037 4.449068 AGTCTGAAAACTTGCACTATGACG 59.551 41.667 0.00 0.00 0.00 4.35
963 1046 9.811995 AAAACTTGCACTATGACGACTATATAA 57.188 29.630 0.00 0.00 0.00 0.98
967 1050 9.119329 CTTGCACTATGACGACTATATAAAGAC 57.881 37.037 0.00 0.00 0.00 3.01
1011 1115 8.123639 AGTACTACACAACATAGAACATGACT 57.876 34.615 0.00 0.72 0.00 3.41
1013 1117 9.504710 GTACTACACAACATAGAACATGACTAG 57.495 37.037 0.00 0.00 0.00 2.57
1016 1120 4.864806 CACAACATAGAACATGACTAGCGT 59.135 41.667 0.00 2.35 0.00 5.07
1047 1151 4.215908 CTGGAGTGTTATGCCTCCTAGTA 58.784 47.826 7.18 0.00 46.17 1.82
1116 1220 2.464865 GTAGATCACTGCACCATCGAC 58.535 52.381 0.00 0.00 0.00 4.20
1172 1276 1.263217 CGAAAAGAACCTTGGTGACCG 59.737 52.381 0.00 0.00 0.00 4.79
1181 1285 3.463728 TTGGTGACCGGGTTCCACG 62.464 63.158 19.68 0.00 0.00 4.94
1201 1305 2.120909 CCGTGGATCCCATGTTGCC 61.121 63.158 9.90 0.00 38.76 4.52
1203 1307 0.964860 CGTGGATCCCATGTTGCCAA 60.965 55.000 9.90 0.00 35.92 4.52
1220 1324 2.098117 GCCAAACAATAAGAGCTGCGAT 59.902 45.455 0.00 0.00 0.00 4.58
1376 1484 7.503521 TTGTCATATTTGTACACACACACAT 57.496 32.000 0.00 0.00 33.30 3.21
1378 1486 6.484977 TGTCATATTTGTACACACACACATGT 59.515 34.615 0.00 0.00 40.80 3.21
1380 1488 8.499967 GTCATATTTGTACACACACACATGTAA 58.500 33.333 0.00 0.00 36.72 2.41
1382 1490 6.935741 ATTTGTACACACACACATGTAAGT 57.064 33.333 0.00 0.00 36.72 2.24
1386 1494 1.597195 CACACACACATGTAAGTGCGT 59.403 47.619 22.64 14.37 43.23 5.24
1387 1495 2.299085 CACACACATGTAAGTGCGTG 57.701 50.000 14.46 11.96 43.45 5.34
1389 1497 0.450972 CACACATGTAAGTGCGTGCG 60.451 55.000 0.00 0.00 43.23 5.34
1390 1498 0.878523 ACACATGTAAGTGCGTGCGT 60.879 50.000 0.00 0.00 43.23 5.24
1391 1499 0.450972 CACATGTAAGTGCGTGCGTG 60.451 55.000 0.00 0.00 32.04 5.34
1392 1500 0.878523 ACATGTAAGTGCGTGCGTGT 60.879 50.000 0.00 0.00 0.00 4.49
1393 1501 0.450972 CATGTAAGTGCGTGCGTGTG 60.451 55.000 0.00 0.00 0.00 3.82
1394 1502 0.878523 ATGTAAGTGCGTGCGTGTGT 60.879 50.000 0.00 0.00 0.00 3.72
1395 1503 1.083657 GTAAGTGCGTGCGTGTGTG 60.084 57.895 0.00 0.00 0.00 3.82
1401 1517 4.918060 CGTGCGTGTGTGTGCGTG 62.918 66.667 0.00 0.00 0.00 5.34
1429 1545 7.904977 GTGTTGATATATGTGCACACTTTACTG 59.095 37.037 24.37 0.00 0.00 2.74
1498 1614 5.178797 CAGGTTACCTTGTTCCAGTCATAG 58.821 45.833 0.00 0.00 0.00 2.23
1506 1622 3.708451 TGTTCCAGTCATAGAGCTACCA 58.292 45.455 0.00 0.00 0.00 3.25
1507 1623 3.447586 TGTTCCAGTCATAGAGCTACCAC 59.552 47.826 0.00 0.00 0.00 4.16
1508 1624 2.667470 TCCAGTCATAGAGCTACCACC 58.333 52.381 0.00 0.00 0.00 4.61
1509 1625 2.245028 TCCAGTCATAGAGCTACCACCT 59.755 50.000 0.00 0.00 0.00 4.00
1510 1626 2.625790 CCAGTCATAGAGCTACCACCTC 59.374 54.545 0.00 0.00 0.00 3.85
1511 1627 2.625790 CAGTCATAGAGCTACCACCTCC 59.374 54.545 0.00 0.00 0.00 4.30
1522 1639 2.203998 CACCTCCACCTCCACCCT 60.204 66.667 0.00 0.00 0.00 4.34
1525 1642 2.037367 CTCCACCTCCACCCTCGA 59.963 66.667 0.00 0.00 0.00 4.04
1533 1650 1.254026 CTCCACCCTCGACAAGTACA 58.746 55.000 0.00 0.00 0.00 2.90
1553 1670 7.676947 AGTACATAGGCTTTCAGTGTAAGAAA 58.323 34.615 13.18 0.00 34.16 2.52
1632 1755 8.330302 GCATTTGCATAATGTATTTGTCCTTTC 58.670 33.333 17.25 0.58 41.59 2.62
1675 1798 2.678471 GCATAGCCTTGCCAATTGTT 57.322 45.000 4.43 0.00 36.60 2.83
1704 1827 5.936187 TGCATTGGTATGATCATTGGTTT 57.064 34.783 14.65 0.00 33.37 3.27
1758 1884 6.092748 AGAAATACAAAAACATAGGCTTGCG 58.907 36.000 0.00 0.00 0.00 4.85
1761 1887 3.836949 ACAAAAACATAGGCTTGCGATG 58.163 40.909 0.00 0.00 0.00 3.84
1785 1911 0.398696 AAGGCATGTCCACGTTGGTA 59.601 50.000 8.58 0.00 39.03 3.25
1792 1918 4.095782 GCATGTCCACGTTGGTATTACATT 59.904 41.667 0.00 0.00 39.03 2.71
1795 1921 7.468084 GCATGTCCACGTTGGTATTACATTATT 60.468 37.037 0.00 0.00 39.03 1.40
1844 1970 1.001269 GGCACACCCTCCCCTAAAC 60.001 63.158 0.00 0.00 0.00 2.01
1848 1974 1.555533 CACACCCTCCCCTAAACTCTC 59.444 57.143 0.00 0.00 0.00 3.20
1853 1979 2.185387 CCTCCCCTAAACTCTCCGAAA 58.815 52.381 0.00 0.00 0.00 3.46
1862 1988 6.178324 CCTAAACTCTCCGAAAAGGGTAATT 58.822 40.000 0.00 0.00 41.52 1.40
1884 2010 5.543507 TTTGTCCAATAAACATGTGCCTT 57.456 34.783 0.00 0.00 0.00 4.35
1885 2011 4.782019 TGTCCAATAAACATGTGCCTTC 57.218 40.909 0.00 0.00 0.00 3.46
1886 2012 4.148079 TGTCCAATAAACATGTGCCTTCA 58.852 39.130 0.00 0.00 0.00 3.02
1933 2059 4.144297 TGTCCTCAATTTGGTTTGGAGAG 58.856 43.478 0.00 0.00 0.00 3.20
1935 2061 4.827284 GTCCTCAATTTGGTTTGGAGAGAA 59.173 41.667 0.00 0.00 0.00 2.87
1956 2082 7.671398 AGAGAATTCTAACACAAATTGGACCAT 59.329 33.333 8.25 0.00 0.00 3.55
1958 2084 5.720371 TTCTAACACAAATTGGACCATGG 57.280 39.130 11.19 11.19 0.00 3.66
2003 2129 5.804639 TGTTGTACTTCACTTCCATAGCAT 58.195 37.500 0.00 0.00 0.00 3.79
2004 2130 6.941857 TGTTGTACTTCACTTCCATAGCATA 58.058 36.000 0.00 0.00 0.00 3.14
2005 2131 6.816640 TGTTGTACTTCACTTCCATAGCATAC 59.183 38.462 0.00 0.00 0.00 2.39
2006 2132 6.538945 TGTACTTCACTTCCATAGCATACA 57.461 37.500 0.00 0.00 0.00 2.29
2007 2133 6.338146 TGTACTTCACTTCCATAGCATACAC 58.662 40.000 0.00 0.00 0.00 2.90
2008 2134 5.683876 ACTTCACTTCCATAGCATACACT 57.316 39.130 0.00 0.00 0.00 3.55
2009 2135 6.791867 ACTTCACTTCCATAGCATACACTA 57.208 37.500 0.00 0.00 0.00 2.74
2010 2136 6.574350 ACTTCACTTCCATAGCATACACTAC 58.426 40.000 0.00 0.00 0.00 2.73
2011 2137 6.381420 ACTTCACTTCCATAGCATACACTACT 59.619 38.462 0.00 0.00 0.00 2.57
2012 2138 6.149129 TCACTTCCATAGCATACACTACTG 57.851 41.667 0.00 0.00 0.00 2.74
2013 2139 4.747108 CACTTCCATAGCATACACTACTGC 59.253 45.833 0.00 0.00 38.69 4.40
2014 2140 3.643159 TCCATAGCATACACTACTGCG 57.357 47.619 0.00 0.00 43.17 5.18
2015 2141 2.296190 TCCATAGCATACACTACTGCGG 59.704 50.000 0.00 0.00 43.17 5.69
2016 2142 2.610479 CCATAGCATACACTACTGCGGG 60.610 54.545 0.00 0.00 43.17 6.13
2017 2143 2.061509 TAGCATACACTACTGCGGGA 57.938 50.000 0.00 0.00 43.17 5.14
2018 2144 1.414158 AGCATACACTACTGCGGGAT 58.586 50.000 0.00 0.00 43.17 3.85
2019 2145 1.069204 AGCATACACTACTGCGGGATG 59.931 52.381 0.00 0.00 43.17 3.51
2020 2146 1.502231 CATACACTACTGCGGGATGC 58.498 55.000 0.00 0.00 46.70 3.91
2021 2147 1.069204 CATACACTACTGCGGGATGCT 59.931 52.381 0.00 0.00 46.63 3.79
2022 2148 0.459899 TACACTACTGCGGGATGCTG 59.540 55.000 0.00 0.00 46.63 4.41
2023 2149 2.176273 CACTACTGCGGGATGCTGC 61.176 63.158 11.71 11.71 45.63 5.25
2024 2150 2.362369 ACTACTGCGGGATGCTGCT 61.362 57.895 19.53 2.08 45.63 4.24
2025 2151 1.043116 ACTACTGCGGGATGCTGCTA 61.043 55.000 19.53 3.26 45.63 3.49
2026 2152 0.104855 CTACTGCGGGATGCTGCTAA 59.895 55.000 19.53 3.68 45.63 3.09
2027 2153 0.179084 TACTGCGGGATGCTGCTAAC 60.179 55.000 19.53 0.00 45.63 2.34
2028 2154 1.450134 CTGCGGGATGCTGCTAACA 60.450 57.895 19.53 0.00 46.63 2.41
2029 2155 1.709147 CTGCGGGATGCTGCTAACAC 61.709 60.000 19.53 0.00 46.63 3.32
2030 2156 2.813179 GCGGGATGCTGCTAACACG 61.813 63.158 11.31 6.40 41.73 4.49
2031 2157 1.153647 CGGGATGCTGCTAACACGA 60.154 57.895 0.00 0.00 0.00 4.35
2032 2158 1.421410 CGGGATGCTGCTAACACGAC 61.421 60.000 0.00 0.00 0.00 4.34
2033 2159 0.391130 GGGATGCTGCTAACACGACA 60.391 55.000 0.00 0.00 0.00 4.35
2034 2160 0.721718 GGATGCTGCTAACACGACAC 59.278 55.000 0.00 0.00 0.00 3.67
2035 2161 1.673033 GGATGCTGCTAACACGACACT 60.673 52.381 0.00 0.00 0.00 3.55
2036 2162 2.416836 GGATGCTGCTAACACGACACTA 60.417 50.000 0.00 0.00 0.00 2.74
2037 2163 3.448686 GATGCTGCTAACACGACACTAT 58.551 45.455 0.00 0.00 0.00 2.12
2038 2164 4.499188 GGATGCTGCTAACACGACACTATA 60.499 45.833 0.00 0.00 0.00 1.31
2039 2165 4.443913 TGCTGCTAACACGACACTATAA 57.556 40.909 0.00 0.00 0.00 0.98
2040 2166 5.006153 TGCTGCTAACACGACACTATAAT 57.994 39.130 0.00 0.00 0.00 1.28
2041 2167 5.041287 TGCTGCTAACACGACACTATAATC 58.959 41.667 0.00 0.00 0.00 1.75
2042 2168 5.041287 GCTGCTAACACGACACTATAATCA 58.959 41.667 0.00 0.00 0.00 2.57
2043 2169 5.174035 GCTGCTAACACGACACTATAATCAG 59.826 44.000 0.00 0.00 0.00 2.90
2044 2170 6.445357 TGCTAACACGACACTATAATCAGA 57.555 37.500 0.00 0.00 0.00 3.27
2045 2171 6.495706 TGCTAACACGACACTATAATCAGAG 58.504 40.000 0.00 0.00 0.00 3.35
2046 2172 6.317893 TGCTAACACGACACTATAATCAGAGA 59.682 38.462 0.00 0.00 0.00 3.10
2047 2173 6.633634 GCTAACACGACACTATAATCAGAGAC 59.366 42.308 0.00 0.00 0.00 3.36
2048 2174 5.502153 ACACGACACTATAATCAGAGACC 57.498 43.478 0.00 0.00 0.00 3.85
2049 2175 4.948004 ACACGACACTATAATCAGAGACCA 59.052 41.667 0.00 0.00 0.00 4.02
2050 2176 5.594725 ACACGACACTATAATCAGAGACCAT 59.405 40.000 0.00 0.00 0.00 3.55
2051 2177 6.096987 ACACGACACTATAATCAGAGACCATT 59.903 38.462 0.00 0.00 0.00 3.16
2052 2178 6.980978 CACGACACTATAATCAGAGACCATTT 59.019 38.462 0.00 0.00 0.00 2.32
2053 2179 6.980978 ACGACACTATAATCAGAGACCATTTG 59.019 38.462 0.00 0.00 0.00 2.32
2054 2180 7.147897 ACGACACTATAATCAGAGACCATTTGA 60.148 37.037 0.00 0.00 0.00 2.69
2055 2181 7.168302 CGACACTATAATCAGAGACCATTTGAC 59.832 40.741 0.00 0.00 0.00 3.18
2056 2182 6.980978 ACACTATAATCAGAGACCATTTGACG 59.019 38.462 0.00 0.00 0.00 4.35
2057 2183 7.147897 ACACTATAATCAGAGACCATTTGACGA 60.148 37.037 0.00 0.00 0.00 4.20
2058 2184 7.706607 CACTATAATCAGAGACCATTTGACGAA 59.293 37.037 0.00 0.00 0.00 3.85
2059 2185 8.258007 ACTATAATCAGAGACCATTTGACGAAA 58.742 33.333 0.00 0.00 0.00 3.46
2060 2186 5.613358 AATCAGAGACCATTTGACGAAAC 57.387 39.130 0.00 0.00 0.00 2.78
2061 2187 4.336889 TCAGAGACCATTTGACGAAACT 57.663 40.909 0.00 0.00 0.00 2.66
2062 2188 5.462530 TCAGAGACCATTTGACGAAACTA 57.537 39.130 0.00 0.00 0.00 2.24
2063 2189 6.037786 TCAGAGACCATTTGACGAAACTAT 57.962 37.500 0.00 0.00 0.00 2.12
2064 2190 5.869344 TCAGAGACCATTTGACGAAACTATG 59.131 40.000 0.00 0.00 0.00 2.23
2065 2191 5.639506 CAGAGACCATTTGACGAAACTATGT 59.360 40.000 0.00 0.00 0.00 2.29
2066 2192 5.639506 AGAGACCATTTGACGAAACTATGTG 59.360 40.000 0.00 0.00 0.00 3.21
2067 2193 4.154195 AGACCATTTGACGAAACTATGTGC 59.846 41.667 0.00 0.00 0.00 4.57
2068 2194 3.120338 ACCATTTGACGAAACTATGTGCG 60.120 43.478 0.00 0.00 0.00 5.34
2069 2195 3.124466 CCATTTGACGAAACTATGTGCGA 59.876 43.478 0.00 0.00 0.00 5.10
2070 2196 4.201812 CCATTTGACGAAACTATGTGCGAT 60.202 41.667 0.00 0.00 0.00 4.58
2071 2197 3.989705 TTGACGAAACTATGTGCGATG 57.010 42.857 0.00 0.00 0.00 3.84
2072 2198 2.954316 TGACGAAACTATGTGCGATGT 58.046 42.857 0.00 0.00 0.00 3.06
2073 2199 4.099380 TGACGAAACTATGTGCGATGTA 57.901 40.909 0.00 0.00 0.00 2.29
2074 2200 4.678622 TGACGAAACTATGTGCGATGTAT 58.321 39.130 0.00 0.00 0.00 2.29
2075 2201 5.106442 TGACGAAACTATGTGCGATGTATT 58.894 37.500 0.00 0.00 0.00 1.89
2076 2202 6.267070 TGACGAAACTATGTGCGATGTATTA 58.733 36.000 0.00 0.00 0.00 0.98
2077 2203 6.752815 TGACGAAACTATGTGCGATGTATTAA 59.247 34.615 0.00 0.00 0.00 1.40
2078 2204 7.436970 TGACGAAACTATGTGCGATGTATTAAT 59.563 33.333 0.00 0.00 0.00 1.40
2079 2205 7.784176 ACGAAACTATGTGCGATGTATTAATC 58.216 34.615 0.00 0.00 0.00 1.75
2091 2217 7.117241 CGATGTATTAATCGCAAATAGTGGT 57.883 36.000 0.00 0.00 42.57 4.16
2092 2218 7.009440 CGATGTATTAATCGCAAATAGTGGTG 58.991 38.462 0.00 0.00 42.57 4.17
2093 2219 7.307160 CGATGTATTAATCGCAAATAGTGGTGT 60.307 37.037 0.00 0.00 42.57 4.16
2094 2220 8.896320 ATGTATTAATCGCAAATAGTGGTGTA 57.104 30.769 0.00 0.00 0.00 2.90
2095 2221 8.719560 TGTATTAATCGCAAATAGTGGTGTAA 57.280 30.769 0.00 0.00 0.00 2.41
2096 2222 8.822855 TGTATTAATCGCAAATAGTGGTGTAAG 58.177 33.333 0.00 0.00 0.00 2.34
2097 2223 9.037737 GTATTAATCGCAAATAGTGGTGTAAGA 57.962 33.333 0.00 0.00 0.00 2.10
2098 2224 7.908827 TTAATCGCAAATAGTGGTGTAAGAA 57.091 32.000 0.00 0.00 0.00 2.52
2099 2225 6.811253 AATCGCAAATAGTGGTGTAAGAAA 57.189 33.333 0.00 0.00 0.00 2.52
2100 2226 6.811253 ATCGCAAATAGTGGTGTAAGAAAA 57.189 33.333 0.00 0.00 0.00 2.29
2101 2227 5.992729 TCGCAAATAGTGGTGTAAGAAAAC 58.007 37.500 0.00 0.00 0.00 2.43
2102 2228 5.049267 TCGCAAATAGTGGTGTAAGAAAACC 60.049 40.000 0.00 0.00 36.96 3.27
2103 2229 5.151389 GCAAATAGTGGTGTAAGAAAACCG 58.849 41.667 0.00 0.00 39.47 4.44
2104 2230 5.278120 GCAAATAGTGGTGTAAGAAAACCGT 60.278 40.000 0.00 0.00 39.47 4.83
2105 2231 6.368213 CAAATAGTGGTGTAAGAAAACCGTC 58.632 40.000 0.00 0.00 39.47 4.79
2106 2232 3.547054 AGTGGTGTAAGAAAACCGTCA 57.453 42.857 0.00 0.00 39.47 4.35
2107 2233 3.876341 AGTGGTGTAAGAAAACCGTCAA 58.124 40.909 0.00 0.00 39.47 3.18
2108 2234 4.263435 AGTGGTGTAAGAAAACCGTCAAA 58.737 39.130 0.00 0.00 39.47 2.69
2109 2235 4.701171 AGTGGTGTAAGAAAACCGTCAAAA 59.299 37.500 0.00 0.00 39.47 2.44
2110 2236 5.183522 AGTGGTGTAAGAAAACCGTCAAAAA 59.816 36.000 0.00 0.00 39.47 1.94
2111 2237 6.037726 GTGGTGTAAGAAAACCGTCAAAAAT 58.962 36.000 0.00 0.00 39.47 1.82
2112 2238 6.020201 GTGGTGTAAGAAAACCGTCAAAAATG 60.020 38.462 0.00 0.00 39.47 2.32
2113 2239 6.127703 TGGTGTAAGAAAACCGTCAAAAATGA 60.128 34.615 0.00 0.00 39.47 2.57
2114 2240 6.921307 GGTGTAAGAAAACCGTCAAAAATGAT 59.079 34.615 0.00 0.00 0.00 2.45
2121 2247 7.812669 AGAAAACCGTCAAAAATGATATGAACC 59.187 33.333 0.00 0.00 0.00 3.62
2124 2250 5.163794 ACCGTCAAAAATGATATGAACCGTC 60.164 40.000 0.00 0.00 0.00 4.79
2131 2257 2.742774 TGATATGAACCGTCTGCGATG 58.257 47.619 0.00 0.00 41.33 3.84
2132 2258 2.061773 GATATGAACCGTCTGCGATGG 58.938 52.381 13.18 13.18 43.80 3.51
2133 2259 0.529773 TATGAACCGTCTGCGATGGC 60.530 55.000 14.28 0.00 42.09 4.40
2146 2272 4.747540 TGCGATGGCATATACATCAAAC 57.252 40.909 15.74 8.04 46.21 2.93
2150 2276 5.505489 GCGATGGCATATACATCAAACACAA 60.505 40.000 15.74 0.00 43.75 3.33
2152 2278 7.140705 CGATGGCATATACATCAAACACAATT 58.859 34.615 15.74 0.00 43.75 2.32
2153 2279 7.324375 CGATGGCATATACATCAAACACAATTC 59.676 37.037 15.74 0.00 43.75 2.17
2155 2281 7.482474 TGGCATATACATCAAACACAATTCAG 58.518 34.615 0.00 0.00 0.00 3.02
2156 2282 7.338957 TGGCATATACATCAAACACAATTCAGA 59.661 33.333 0.00 0.00 0.00 3.27
2157 2283 8.355169 GGCATATACATCAAACACAATTCAGAT 58.645 33.333 0.00 0.00 0.00 2.90
2158 2284 9.740239 GCATATACATCAAACACAATTCAGATT 57.260 29.630 0.00 0.00 0.00 2.40
2163 2289 8.627208 ACATCAAACACAATTCAGATTAGAGT 57.373 30.769 0.00 0.00 0.00 3.24
2164 2290 9.071276 ACATCAAACACAATTCAGATTAGAGTT 57.929 29.630 0.00 0.00 0.00 3.01
2166 2292 7.362662 TCAAACACAATTCAGATTAGAGTTGC 58.637 34.615 0.00 0.00 38.39 4.17
2167 2293 7.229306 TCAAACACAATTCAGATTAGAGTTGCT 59.771 33.333 0.00 0.00 38.39 3.91
2171 2297 6.800408 CACAATTCAGATTAGAGTTGCTTGTG 59.200 38.462 0.00 0.00 38.39 3.33
2172 2298 5.557891 ATTCAGATTAGAGTTGCTTGTGC 57.442 39.130 0.00 0.00 40.20 4.57
2173 2299 2.995939 TCAGATTAGAGTTGCTTGTGCG 59.004 45.455 0.00 0.00 43.34 5.34
2178 2304 5.464722 AGATTAGAGTTGCTTGTGCGATATG 59.535 40.000 0.00 0.00 43.34 1.78
2179 2305 2.977914 AGAGTTGCTTGTGCGATATGT 58.022 42.857 0.00 0.00 43.34 2.29
2181 2307 1.739466 AGTTGCTTGTGCGATATGTGG 59.261 47.619 0.00 0.00 43.34 4.17
2191 2317 2.871633 TGCGATATGTGGCATACAGTTG 59.128 45.455 0.00 0.00 43.80 3.16
2193 2319 3.748048 GCGATATGTGGCATACAGTTGAT 59.252 43.478 0.00 0.00 43.80 2.57
2194 2320 4.143030 GCGATATGTGGCATACAGTTGATC 60.143 45.833 0.00 0.00 43.80 2.92
2195 2321 5.233225 CGATATGTGGCATACAGTTGATCT 58.767 41.667 0.00 0.00 43.80 2.75
2196 2322 6.389906 CGATATGTGGCATACAGTTGATCTA 58.610 40.000 0.00 0.00 43.80 1.98
2199 2325 5.011090 TGTGGCATACAGTTGATCTAGAC 57.989 43.478 0.00 0.00 33.42 2.59
2210 2336 4.686554 AGTTGATCTAGACGAACTGTTTGC 59.313 41.667 14.61 1.54 0.00 3.68
2214 2340 3.242518 TCTAGACGAACTGTTTGCGATG 58.757 45.455 7.69 0.00 0.00 3.84
2234 2361 5.626543 CGATGAGCATAACAACATAAATGGC 59.373 40.000 0.00 0.00 0.00 4.40
2239 2366 5.010012 AGCATAACAACATAAATGGCTAGCC 59.990 40.000 27.71 27.71 0.00 3.93
2259 2386 3.315191 GCCATATTAAGGTGTGTGCGATT 59.685 43.478 0.00 0.00 0.00 3.34
2260 2387 4.202010 GCCATATTAAGGTGTGTGCGATTT 60.202 41.667 0.00 0.00 0.00 2.17
2262 2389 6.427150 CCATATTAAGGTGTGTGCGATTTAC 58.573 40.000 0.00 0.00 0.00 2.01
2263 2390 6.037720 CCATATTAAGGTGTGTGCGATTTACA 59.962 38.462 0.00 0.00 0.00 2.41
2265 2392 2.543777 AGGTGTGTGCGATTTACAGT 57.456 45.000 0.00 0.00 0.00 3.55
2272 2400 3.493129 GTGTGCGATTTACAGTTCACTCA 59.507 43.478 0.00 0.00 0.00 3.41
2273 2401 3.740832 TGTGCGATTTACAGTTCACTCAG 59.259 43.478 0.00 0.00 0.00 3.35
2277 2405 4.493220 GCGATTTACAGTTCACTCAGATGC 60.493 45.833 0.00 0.00 0.00 3.91
2281 2409 5.722021 TTACAGTTCACTCAGATGCACTA 57.278 39.130 0.00 0.00 0.00 2.74
2282 2410 4.815533 ACAGTTCACTCAGATGCACTAT 57.184 40.909 0.00 0.00 0.00 2.12
2301 2429 6.312487 CACTATTTGCAATCAGACAAGACAG 58.688 40.000 13.19 0.00 0.00 3.51
2309 2437 3.541996 TCAGACAAGACAGCAGAAACA 57.458 42.857 0.00 0.00 0.00 2.83
2341 2469 2.258755 CAAGATGTGTGTGATACGCGA 58.741 47.619 15.93 0.00 42.76 5.87
2344 2472 2.159240 AGATGTGTGTGATACGCGACAT 60.159 45.455 15.93 9.61 42.76 3.06
2348 2476 4.922719 TGTGTGTGATACGCGACATATAA 58.077 39.130 15.93 0.00 42.76 0.98
2371 2499 3.435327 GTCCGTAATCAGAAATGTGTGCA 59.565 43.478 0.00 0.00 0.00 4.57
2373 2501 4.083537 TCCGTAATCAGAAATGTGTGCAAC 60.084 41.667 0.00 0.00 37.35 4.17
2377 2505 2.284190 TCAGAAATGTGTGCAACGACA 58.716 42.857 0.00 0.00 42.39 4.35
2388 2516 5.107259 TGTGTGCAACGACAGATAATAACAC 60.107 40.000 0.00 0.00 42.39 3.32
2390 2518 5.467063 TGTGCAACGACAGATAATAACACAA 59.533 36.000 0.00 0.00 42.39 3.33
2406 2534 5.621197 AACACAAACGATTGCTGCTAATA 57.379 34.783 5.20 0.00 40.34 0.98
2408 2536 6.007936 ACACAAACGATTGCTGCTAATAAA 57.992 33.333 5.20 0.00 40.34 1.40
2411 2539 3.944422 ACGATTGCTGCTAATAAACCG 57.056 42.857 0.00 2.46 0.00 4.44
2417 2545 3.142951 TGCTGCTAATAAACCGTGTGTT 58.857 40.909 0.00 0.00 39.43 3.32
2434 2562 0.649993 GTTTTGTGGGCAAACGCTTG 59.350 50.000 0.00 0.00 43.47 4.01
2478 2606 8.023128 GTGATTAATAAAATCATCACCGATGGG 58.977 37.037 3.93 0.00 39.70 4.00
2493 2621 2.679930 CGATGGGTTCCCTAGTTTGGTC 60.680 54.545 9.43 0.00 0.00 4.02
2495 2623 1.069775 GGGTTCCCTAGTTTGGTCCA 58.930 55.000 0.00 0.00 0.00 4.02
2502 2630 1.610624 CCTAGTTTGGTCCATGTGCGT 60.611 52.381 0.00 0.00 0.00 5.24
2510 2638 1.269448 GGTCCATGTGCGTTGTGATTT 59.731 47.619 0.00 0.00 0.00 2.17
2511 2639 2.318578 GTCCATGTGCGTTGTGATTTG 58.681 47.619 0.00 0.00 0.00 2.32
2512 2640 1.062258 CCATGTGCGTTGTGATTTGC 58.938 50.000 0.00 0.00 0.00 3.68
2513 2641 1.336148 CCATGTGCGTTGTGATTTGCT 60.336 47.619 0.00 0.00 0.00 3.91
2514 2642 1.980844 CATGTGCGTTGTGATTTGCTC 59.019 47.619 0.00 0.00 0.00 4.26
2515 2643 0.310543 TGTGCGTTGTGATTTGCTCC 59.689 50.000 0.00 0.00 0.00 4.70
2516 2644 0.725784 GTGCGTTGTGATTTGCTCCG 60.726 55.000 0.00 0.00 0.00 4.63
2517 2645 1.163420 TGCGTTGTGATTTGCTCCGT 61.163 50.000 0.00 0.00 0.00 4.69
2518 2646 0.452784 GCGTTGTGATTTGCTCCGTC 60.453 55.000 0.00 0.00 0.00 4.79
2519 2647 1.148310 CGTTGTGATTTGCTCCGTCT 58.852 50.000 0.00 0.00 0.00 4.18
2531 2659 2.299013 TGCTCCGTCTACAGAACAACAT 59.701 45.455 0.00 0.00 0.00 2.71
2567 2695 3.220110 AGGACATGATTGCATAGCCAAG 58.780 45.455 0.00 0.00 32.33 3.61
2573 2701 6.332630 ACATGATTGCATAGCCAAGTTAAAC 58.667 36.000 0.00 0.00 32.27 2.01
2577 2705 4.614555 TGCATAGCCAAGTTAAACATCG 57.385 40.909 0.00 0.00 0.00 3.84
2586 2714 7.826690 AGCCAAGTTAAACATCGAATTACATT 58.173 30.769 0.00 0.00 0.00 2.71
2624 2752 3.599730 TGACATTTGCACACACCAAAA 57.400 38.095 0.00 0.00 35.97 2.44
2625 2753 4.134379 TGACATTTGCACACACCAAAAT 57.866 36.364 0.00 0.00 35.97 1.82
2626 2754 5.268118 TGACATTTGCACACACCAAAATA 57.732 34.783 0.00 0.00 35.97 1.40
2630 2758 5.877012 ACATTTGCACACACCAAAATAAACA 59.123 32.000 0.00 0.00 35.97 2.83
2632 2760 6.992063 TTTGCACACACCAAAATAAACAAT 57.008 29.167 0.00 0.00 29.93 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.175760 TCATCACGCCTGTTCCTAGC 59.824 55.000 0.00 0.00 0.00 3.42
1 2 2.672961 TTCATCACGCCTGTTCCTAG 57.327 50.000 0.00 0.00 0.00 3.02
5 6 2.483877 TCAACATTCATCACGCCTGTTC 59.516 45.455 0.00 0.00 0.00 3.18
6 7 2.485426 CTCAACATTCATCACGCCTGTT 59.515 45.455 0.00 0.00 0.00 3.16
7 8 2.079158 CTCAACATTCATCACGCCTGT 58.921 47.619 0.00 0.00 0.00 4.00
8 9 2.349590 TCTCAACATTCATCACGCCTG 58.650 47.619 0.00 0.00 0.00 4.85
9 10 2.768253 TCTCAACATTCATCACGCCT 57.232 45.000 0.00 0.00 0.00 5.52
10 11 2.096496 CCTTCTCAACATTCATCACGCC 59.904 50.000 0.00 0.00 0.00 5.68
11 12 2.744202 ACCTTCTCAACATTCATCACGC 59.256 45.455 0.00 0.00 0.00 5.34
12 13 3.996363 TGACCTTCTCAACATTCATCACG 59.004 43.478 0.00 0.00 0.00 4.35
13 14 4.394300 CCTGACCTTCTCAACATTCATCAC 59.606 45.833 0.00 0.00 0.00 3.06
14 15 4.566278 CCCTGACCTTCTCAACATTCATCA 60.566 45.833 0.00 0.00 0.00 3.07
15 16 3.944015 CCCTGACCTTCTCAACATTCATC 59.056 47.826 0.00 0.00 0.00 2.92
16 17 3.588842 TCCCTGACCTTCTCAACATTCAT 59.411 43.478 0.00 0.00 0.00 2.57
17 18 2.978978 TCCCTGACCTTCTCAACATTCA 59.021 45.455 0.00 0.00 0.00 2.57
18 19 3.261897 TCTCCCTGACCTTCTCAACATTC 59.738 47.826 0.00 0.00 0.00 2.67
19 20 3.251484 TCTCCCTGACCTTCTCAACATT 58.749 45.455 0.00 0.00 0.00 2.71
20 21 2.907892 TCTCCCTGACCTTCTCAACAT 58.092 47.619 0.00 0.00 0.00 2.71
21 22 2.398754 TCTCCCTGACCTTCTCAACA 57.601 50.000 0.00 0.00 0.00 3.33
22 23 3.990959 AATCTCCCTGACCTTCTCAAC 57.009 47.619 0.00 0.00 0.00 3.18
23 24 4.844085 TGTAAATCTCCCTGACCTTCTCAA 59.156 41.667 0.00 0.00 0.00 3.02
24 25 4.425772 TGTAAATCTCCCTGACCTTCTCA 58.574 43.478 0.00 0.00 0.00 3.27
25 26 5.622346 ATGTAAATCTCCCTGACCTTCTC 57.378 43.478 0.00 0.00 0.00 2.87
26 27 5.339530 CCAATGTAAATCTCCCTGACCTTCT 60.340 44.000 0.00 0.00 0.00 2.85
27 28 4.884164 CCAATGTAAATCTCCCTGACCTTC 59.116 45.833 0.00 0.00 0.00 3.46
28 29 4.325344 CCCAATGTAAATCTCCCTGACCTT 60.325 45.833 0.00 0.00 0.00 3.50
29 30 3.203040 CCCAATGTAAATCTCCCTGACCT 59.797 47.826 0.00 0.00 0.00 3.85
30 31 3.202151 TCCCAATGTAAATCTCCCTGACC 59.798 47.826 0.00 0.00 0.00 4.02
31 32 4.080299 AGTCCCAATGTAAATCTCCCTGAC 60.080 45.833 0.00 0.00 0.00 3.51
32 33 4.080356 CAGTCCCAATGTAAATCTCCCTGA 60.080 45.833 0.00 0.00 0.00 3.86
33 34 4.080356 TCAGTCCCAATGTAAATCTCCCTG 60.080 45.833 0.00 0.00 0.00 4.45
34 35 4.111577 TCAGTCCCAATGTAAATCTCCCT 58.888 43.478 0.00 0.00 0.00 4.20
35 36 4.503714 TCAGTCCCAATGTAAATCTCCC 57.496 45.455 0.00 0.00 0.00 4.30
36 37 8.697507 ATAAATCAGTCCCAATGTAAATCTCC 57.302 34.615 0.00 0.00 0.00 3.71
37 38 9.342308 TGATAAATCAGTCCCAATGTAAATCTC 57.658 33.333 0.00 0.00 32.11 2.75
38 39 9.872684 ATGATAAATCAGTCCCAATGTAAATCT 57.127 29.630 0.00 0.00 40.64 2.40
39 40 9.903682 CATGATAAATCAGTCCCAATGTAAATC 57.096 33.333 0.00 0.00 40.64 2.17
40 41 9.425248 ACATGATAAATCAGTCCCAATGTAAAT 57.575 29.630 0.00 0.00 40.64 1.40
41 42 8.685427 CACATGATAAATCAGTCCCAATGTAAA 58.315 33.333 0.00 0.00 40.64 2.01
42 43 7.285172 CCACATGATAAATCAGTCCCAATGTAA 59.715 37.037 0.00 0.00 40.64 2.41
43 44 6.772233 CCACATGATAAATCAGTCCCAATGTA 59.228 38.462 0.00 0.00 40.64 2.29
44 45 5.595542 CCACATGATAAATCAGTCCCAATGT 59.404 40.000 0.00 0.00 40.64 2.71
45 46 5.508489 GCCACATGATAAATCAGTCCCAATG 60.508 44.000 0.00 0.00 40.64 2.82
46 47 4.586001 GCCACATGATAAATCAGTCCCAAT 59.414 41.667 0.00 0.00 40.64 3.16
47 48 3.953612 GCCACATGATAAATCAGTCCCAA 59.046 43.478 0.00 0.00 40.64 4.12
48 49 3.053768 TGCCACATGATAAATCAGTCCCA 60.054 43.478 0.00 0.00 40.64 4.37
49 50 3.554934 TGCCACATGATAAATCAGTCCC 58.445 45.455 0.00 0.00 40.64 4.46
50 51 6.000219 ACTATGCCACATGATAAATCAGTCC 59.000 40.000 0.00 0.00 40.64 3.85
51 52 7.308229 GGAACTATGCCACATGATAAATCAGTC 60.308 40.741 0.00 0.00 40.64 3.51
52 53 6.488006 GGAACTATGCCACATGATAAATCAGT 59.512 38.462 0.00 0.00 40.64 3.41
53 54 6.713903 AGGAACTATGCCACATGATAAATCAG 59.286 38.462 0.00 0.00 37.23 2.90
54 55 6.604171 AGGAACTATGCCACATGATAAATCA 58.396 36.000 0.00 0.00 38.03 2.57
55 56 6.150140 GGAGGAACTATGCCACATGATAAATC 59.850 42.308 0.00 0.00 41.55 2.17
56 57 6.006449 GGAGGAACTATGCCACATGATAAAT 58.994 40.000 0.00 0.00 41.55 1.40
57 58 5.104151 TGGAGGAACTATGCCACATGATAAA 60.104 40.000 0.00 0.00 41.55 1.40
58 59 4.411869 TGGAGGAACTATGCCACATGATAA 59.588 41.667 0.00 0.00 41.55 1.75
59 60 3.973305 TGGAGGAACTATGCCACATGATA 59.027 43.478 0.00 0.00 41.55 2.15
60 61 2.779430 TGGAGGAACTATGCCACATGAT 59.221 45.455 0.00 0.00 41.55 2.45
61 62 2.195727 TGGAGGAACTATGCCACATGA 58.804 47.619 0.00 0.00 41.55 3.07
62 63 2.715749 TGGAGGAACTATGCCACATG 57.284 50.000 0.00 0.00 41.55 3.21
63 64 2.684927 GCTTGGAGGAACTATGCCACAT 60.685 50.000 0.00 0.00 41.55 3.21
64 65 1.340017 GCTTGGAGGAACTATGCCACA 60.340 52.381 0.00 0.00 41.55 4.17
65 66 1.383523 GCTTGGAGGAACTATGCCAC 58.616 55.000 0.00 0.00 41.55 5.01
66 67 0.255890 GGCTTGGAGGAACTATGCCA 59.744 55.000 0.00 0.00 45.13 4.92
67 68 0.255890 TGGCTTGGAGGAACTATGCC 59.744 55.000 0.00 0.00 45.68 4.40
68 69 2.019984 CTTGGCTTGGAGGAACTATGC 58.980 52.381 0.00 0.00 41.55 3.14
69 70 3.274288 GACTTGGCTTGGAGGAACTATG 58.726 50.000 0.00 0.00 41.55 2.23
70 71 2.239907 GGACTTGGCTTGGAGGAACTAT 59.760 50.000 0.00 0.00 41.55 2.12
71 72 1.628846 GGACTTGGCTTGGAGGAACTA 59.371 52.381 0.00 0.00 41.55 2.24
73 74 0.110486 TGGACTTGGCTTGGAGGAAC 59.890 55.000 0.00 0.00 0.00 3.62
74 75 1.075601 ATGGACTTGGCTTGGAGGAA 58.924 50.000 0.00 0.00 0.00 3.36
75 76 0.329261 CATGGACTTGGCTTGGAGGA 59.671 55.000 0.00 0.00 0.00 3.71
76 77 0.329261 TCATGGACTTGGCTTGGAGG 59.671 55.000 0.00 0.00 0.00 4.30
77 78 1.280133 TCTCATGGACTTGGCTTGGAG 59.720 52.381 0.00 0.00 0.00 3.86
78 79 1.361204 TCTCATGGACTTGGCTTGGA 58.639 50.000 0.00 0.00 0.00 3.53
79 80 2.022195 CATCTCATGGACTTGGCTTGG 58.978 52.381 0.00 0.00 0.00 3.61
80 81 2.943690 CTCATCTCATGGACTTGGCTTG 59.056 50.000 0.00 0.00 0.00 4.01
81 82 2.842496 TCTCATCTCATGGACTTGGCTT 59.158 45.455 0.00 0.00 0.00 4.35
82 83 2.475155 TCTCATCTCATGGACTTGGCT 58.525 47.619 0.00 0.00 0.00 4.75
83 84 2.996249 TCTCATCTCATGGACTTGGC 57.004 50.000 0.00 0.00 0.00 4.52
84 85 3.320256 TCGATCTCATCTCATGGACTTGG 59.680 47.826 0.00 0.00 0.00 3.61
85 86 4.277921 TCTCGATCTCATCTCATGGACTTG 59.722 45.833 0.00 0.00 0.00 3.16
86 87 4.468713 TCTCGATCTCATCTCATGGACTT 58.531 43.478 0.00 0.00 0.00 3.01
87 88 4.074259 CTCTCGATCTCATCTCATGGACT 58.926 47.826 0.00 0.00 0.00 3.85
88 89 4.071423 TCTCTCGATCTCATCTCATGGAC 58.929 47.826 0.00 0.00 0.00 4.02
89 90 4.363991 TCTCTCGATCTCATCTCATGGA 57.636 45.455 0.00 0.00 0.00 3.41
90 91 5.643664 GATTCTCTCGATCTCATCTCATGG 58.356 45.833 0.00 0.00 0.00 3.66
105 106 4.392921 TTTGGAGTCCATCGATTCTCTC 57.607 45.455 14.00 13.44 31.53 3.20
106 107 5.121811 CAATTTGGAGTCCATCGATTCTCT 58.878 41.667 14.00 7.15 31.53 3.10
107 108 4.878397 ACAATTTGGAGTCCATCGATTCTC 59.122 41.667 14.00 4.40 31.53 2.87
108 109 4.848357 ACAATTTGGAGTCCATCGATTCT 58.152 39.130 14.00 0.00 31.53 2.40
109 110 5.162000 GACAATTTGGAGTCCATCGATTC 57.838 43.478 14.00 3.84 31.53 2.52
121 122 5.880164 TGTATATCTCCGGACAATTTGGA 57.120 39.130 0.00 0.00 0.00 3.53
122 123 6.542370 AGTTTGTATATCTCCGGACAATTTGG 59.458 38.462 0.00 0.00 32.19 3.28
123 124 7.553881 AGTTTGTATATCTCCGGACAATTTG 57.446 36.000 0.00 0.00 32.19 2.32
124 125 7.931948 CCTAGTTTGTATATCTCCGGACAATTT 59.068 37.037 0.00 0.00 32.19 1.82
125 126 7.070821 ACCTAGTTTGTATATCTCCGGACAATT 59.929 37.037 0.00 0.00 32.19 2.32
126 127 6.553852 ACCTAGTTTGTATATCTCCGGACAAT 59.446 38.462 0.00 0.00 32.19 2.71
127 128 5.895534 ACCTAGTTTGTATATCTCCGGACAA 59.104 40.000 0.00 0.00 0.00 3.18
128 129 5.452255 ACCTAGTTTGTATATCTCCGGACA 58.548 41.667 0.00 0.00 0.00 4.02
129 130 6.183360 ACAACCTAGTTTGTATATCTCCGGAC 60.183 42.308 3.50 0.00 37.96 4.79
130 131 5.895534 ACAACCTAGTTTGTATATCTCCGGA 59.104 40.000 3.50 2.93 37.96 5.14
131 132 5.983720 CACAACCTAGTTTGTATATCTCCGG 59.016 44.000 5.23 0.00 37.62 5.14
132 133 5.983720 CCACAACCTAGTTTGTATATCTCCG 59.016 44.000 5.23 0.00 37.62 4.63
133 134 5.758784 GCCACAACCTAGTTTGTATATCTCC 59.241 44.000 5.23 0.00 37.62 3.71
134 135 6.583562 AGCCACAACCTAGTTTGTATATCTC 58.416 40.000 5.23 0.00 37.62 2.75
135 136 6.561519 AGCCACAACCTAGTTTGTATATCT 57.438 37.500 5.23 0.00 37.62 1.98
136 137 6.929606 CCTAGCCACAACCTAGTTTGTATATC 59.070 42.308 5.23 0.00 37.62 1.63
137 138 6.386050 ACCTAGCCACAACCTAGTTTGTATAT 59.614 38.462 5.23 0.00 37.62 0.86
138 139 5.722923 ACCTAGCCACAACCTAGTTTGTATA 59.277 40.000 5.23 0.00 37.62 1.47
139 140 4.534897 ACCTAGCCACAACCTAGTTTGTAT 59.465 41.667 5.23 0.00 37.62 2.29
140 141 3.905591 ACCTAGCCACAACCTAGTTTGTA 59.094 43.478 5.23 0.00 37.62 2.41
141 142 2.709397 ACCTAGCCACAACCTAGTTTGT 59.291 45.455 0.00 0.00 40.46 2.83
142 143 3.418684 ACCTAGCCACAACCTAGTTTG 57.581 47.619 0.00 0.00 32.29 2.93
143 144 5.571791 TTAACCTAGCCACAACCTAGTTT 57.428 39.130 0.00 0.00 32.29 2.66
144 145 5.774102 ATTAACCTAGCCACAACCTAGTT 57.226 39.130 0.00 0.00 32.29 2.24
145 146 5.962641 AGTATTAACCTAGCCACAACCTAGT 59.037 40.000 0.00 0.00 32.29 2.57
146 147 6.462628 GGAGTATTAACCTAGCCACAACCTAG 60.463 46.154 0.00 0.00 33.64 3.02
147 148 5.364735 GGAGTATTAACCTAGCCACAACCTA 59.635 44.000 0.00 0.00 0.00 3.08
148 149 4.163649 GGAGTATTAACCTAGCCACAACCT 59.836 45.833 0.00 0.00 0.00 3.50
149 150 4.449131 GGAGTATTAACCTAGCCACAACC 58.551 47.826 0.00 0.00 0.00 3.77
150 151 4.163649 AGGGAGTATTAACCTAGCCACAAC 59.836 45.833 0.00 0.00 31.53 3.32
151 152 4.368067 AGGGAGTATTAACCTAGCCACAA 58.632 43.478 0.00 0.00 31.53 3.33
152 153 3.965347 GAGGGAGTATTAACCTAGCCACA 59.035 47.826 0.00 0.00 34.02 4.17
153 154 3.324268 GGAGGGAGTATTAACCTAGCCAC 59.676 52.174 0.00 0.00 34.02 5.01
154 155 3.584294 GGAGGGAGTATTAACCTAGCCA 58.416 50.000 0.00 0.00 34.02 4.75
155 156 2.561858 CGGAGGGAGTATTAACCTAGCC 59.438 54.545 0.00 0.00 34.02 3.93
156 157 3.229293 ACGGAGGGAGTATTAACCTAGC 58.771 50.000 0.00 0.00 34.02 3.42
157 158 6.774656 TCTTTACGGAGGGAGTATTAACCTAG 59.225 42.308 0.00 0.00 34.02 3.02
158 159 6.672593 TCTTTACGGAGGGAGTATTAACCTA 58.327 40.000 0.00 0.00 34.02 3.08
159 160 5.522641 TCTTTACGGAGGGAGTATTAACCT 58.477 41.667 0.00 0.00 37.31 3.50
160 161 5.859205 TCTTTACGGAGGGAGTATTAACC 57.141 43.478 0.00 0.00 0.00 2.85
161 162 9.993454 ATATTTCTTTACGGAGGGAGTATTAAC 57.007 33.333 0.00 0.00 0.00 2.01
165 166 9.597681 TCTTATATTTCTTTACGGAGGGAGTAT 57.402 33.333 0.00 0.00 0.00 2.12
166 167 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
167 168 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
168 169 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
169 170 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
170 171 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
171 172 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
172 173 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
173 174 9.754382 ATAAACGCTCTTATATTTCTTTACGGA 57.246 29.630 0.00 0.00 0.00 4.69
179 180 9.765795 AGTGCTATAAACGCTCTTATATTTCTT 57.234 29.630 0.00 0.00 0.00 2.52
186 187 9.460906 GTTAAGTAGTGCTATAAACGCTCTTAT 57.539 33.333 0.00 0.00 33.73 1.73
187 188 8.461222 TGTTAAGTAGTGCTATAAACGCTCTTA 58.539 33.333 0.00 0.00 33.73 2.10
188 189 7.318141 TGTTAAGTAGTGCTATAAACGCTCTT 58.682 34.615 0.00 0.00 33.73 2.85
189 190 6.860080 TGTTAAGTAGTGCTATAAACGCTCT 58.140 36.000 0.00 0.00 35.62 4.09
190 191 7.515957 TTGTTAAGTAGTGCTATAAACGCTC 57.484 36.000 0.00 0.00 0.00 5.03
191 192 7.816031 TCTTTGTTAAGTAGTGCTATAAACGCT 59.184 33.333 0.00 0.00 32.98 5.07
192 193 7.956558 TCTTTGTTAAGTAGTGCTATAAACGC 58.043 34.615 0.00 0.00 32.98 4.84
197 198 9.991906 AGTGTTTCTTTGTTAAGTAGTGCTATA 57.008 29.630 0.00 0.00 32.98 1.31
198 199 8.774586 CAGTGTTTCTTTGTTAAGTAGTGCTAT 58.225 33.333 0.00 0.00 32.98 2.97
199 200 7.767198 ACAGTGTTTCTTTGTTAAGTAGTGCTA 59.233 33.333 0.00 0.00 32.98 3.49
200 201 6.598064 ACAGTGTTTCTTTGTTAAGTAGTGCT 59.402 34.615 0.00 0.00 32.98 4.40
201 202 6.782150 ACAGTGTTTCTTTGTTAAGTAGTGC 58.218 36.000 0.00 0.00 32.98 4.40
265 266 3.849911 TCTAACCAGCTGTTCAGATTCG 58.150 45.455 13.81 0.00 38.42 3.34
276 277 4.906664 AGATCTGATCCAATCTAACCAGCT 59.093 41.667 13.83 0.00 30.50 4.24
278 279 9.868277 GTTATAGATCTGATCCAATCTAACCAG 57.132 37.037 13.83 0.00 37.86 4.00
302 303 4.998033 GGGATTTCAGTCGAGAGAAAAGTT 59.002 41.667 14.07 1.38 45.01 2.66
303 304 4.040461 TGGGATTTCAGTCGAGAGAAAAGT 59.960 41.667 14.07 1.98 45.01 2.66
311 312 4.319177 AGAAAACTGGGATTTCAGTCGAG 58.681 43.478 0.00 0.00 46.17 4.04
312 313 4.351874 AGAAAACTGGGATTTCAGTCGA 57.648 40.909 0.00 0.00 46.17 4.20
314 315 6.805713 TGAAAAGAAAACTGGGATTTCAGTC 58.194 36.000 0.00 0.00 46.17 3.51
316 317 8.553696 CAATTGAAAAGAAAACTGGGATTTCAG 58.446 33.333 0.00 0.00 38.86 3.02
318 319 8.661352 TCAATTGAAAAGAAAACTGGGATTTC 57.339 30.769 5.45 0.00 37.11 2.17
319 320 9.460019 TTTCAATTGAAAAGAAAACTGGGATTT 57.540 25.926 27.22 0.00 40.68 2.17
367 369 8.988060 TGGTCCTGAATTATTACAGTTGAGATA 58.012 33.333 0.00 0.00 32.93 1.98
376 378 8.642935 TGATTTTGTGGTCCTGAATTATTACA 57.357 30.769 0.00 0.00 0.00 2.41
387 389 4.901250 AGAAACCATTGATTTTGTGGTCCT 59.099 37.500 0.00 0.00 45.10 3.85
403 405 7.841956 TGGTGAAAACAGAAAAATAGAAACCA 58.158 30.769 0.00 0.00 0.00 3.67
432 435 8.692710 ACAGACTCCATAGATAATTTTCACGTA 58.307 33.333 0.00 0.00 0.00 3.57
434 437 9.529325 TTACAGACTCCATAGATAATTTTCACG 57.471 33.333 0.00 0.00 0.00 4.35
624 697 6.261118 GTGCATCCAGTTCTTGTATCAAATC 58.739 40.000 0.00 0.00 0.00 2.17
687 763 4.084013 GCACATGTGTGGTTCTTGTAGTAC 60.084 45.833 26.01 0.70 45.72 2.73
735 814 8.880244 ACTCTTAATAGATATGCATACCCAACA 58.120 33.333 8.99 0.00 0.00 3.33
769 850 4.660789 ATTGCTGGCAATGGATTAGTTC 57.339 40.909 18.34 0.00 44.05 3.01
775 856 5.149976 ACCTATTAATTGCTGGCAATGGAT 58.850 37.500 19.49 17.20 44.86 3.41
834 917 6.199154 CACTTAATGTAGGCACATCTAACTCG 59.801 42.308 3.61 0.00 44.83 4.18
895 978 9.788960 CATCGATCGATTAATTGGACTATTCTA 57.211 33.333 27.45 0.00 31.62 2.10
897 980 8.689251 TCATCGATCGATTAATTGGACTATTC 57.311 34.615 27.45 0.00 31.62 1.75
923 1006 4.943705 TGCAAGTTTTCAGACTCTCTTTGT 59.056 37.500 0.00 0.00 0.00 2.83
929 1012 5.698545 GTCATAGTGCAAGTTTTCAGACTCT 59.301 40.000 0.00 0.00 0.00 3.24
954 1037 4.918583 GCCACTCAGCGTCTTTATATAGTC 59.081 45.833 0.00 0.00 0.00 2.59
1011 1115 3.508793 ACACTCCAGCTACTTTAACGCTA 59.491 43.478 0.00 0.00 31.80 4.26
1013 1117 2.685100 ACACTCCAGCTACTTTAACGC 58.315 47.619 0.00 0.00 0.00 4.84
1016 1120 5.045869 AGGCATAACACTCCAGCTACTTTAA 60.046 40.000 0.00 0.00 0.00 1.52
1047 1151 6.623767 GCGAACAAGAAGAGATAGCCAAAAAT 60.624 38.462 0.00 0.00 0.00 1.82
1092 1196 0.252696 TGGTGCAGTGATCTACCCCT 60.253 55.000 0.00 0.00 32.20 4.79
1116 1220 5.327091 CAGTCTCGCATCACCTTATTTTTG 58.673 41.667 0.00 0.00 0.00 2.44
1181 1285 1.376609 GCAACATGGGATCCACGGTC 61.377 60.000 15.23 0.00 35.80 4.79
1201 1305 5.291858 TGTCTATCGCAGCTCTTATTGTTTG 59.708 40.000 0.00 0.00 0.00 2.93
1203 1307 5.011090 TGTCTATCGCAGCTCTTATTGTT 57.989 39.130 0.00 0.00 0.00 2.83
1214 1318 1.495878 GCAGTGGATGTCTATCGCAG 58.504 55.000 0.00 0.00 33.98 5.18
1376 1484 1.519676 ACACACGCACGCACTTACA 60.520 52.632 0.00 0.00 0.00 2.41
1378 1486 1.519676 ACACACACGCACGCACTTA 60.520 52.632 0.00 0.00 0.00 2.24
1380 1488 3.563088 CACACACACGCACGCACT 61.563 61.111 0.00 0.00 0.00 4.40
1386 1494 3.858989 CACACGCACACACACGCA 61.859 61.111 0.00 0.00 0.00 5.24
1387 1495 3.860125 ACACACGCACACACACGC 61.860 61.111 0.00 0.00 0.00 5.34
1389 1497 0.792729 CAACACACACGCACACACAC 60.793 55.000 0.00 0.00 0.00 3.82
1390 1498 0.951040 TCAACACACACGCACACACA 60.951 50.000 0.00 0.00 0.00 3.72
1391 1499 0.376852 ATCAACACACACGCACACAC 59.623 50.000 0.00 0.00 0.00 3.82
1392 1500 1.941325 TATCAACACACACGCACACA 58.059 45.000 0.00 0.00 0.00 3.72
1393 1501 4.092821 ACATATATCAACACACACGCACAC 59.907 41.667 0.00 0.00 0.00 3.82
1394 1502 4.092675 CACATATATCAACACACACGCACA 59.907 41.667 0.00 0.00 0.00 4.57
1395 1503 4.577639 CACATATATCAACACACACGCAC 58.422 43.478 0.00 0.00 0.00 5.34
1466 1582 5.465390 GGAACAAGGTAACCTGCAAAATTTC 59.535 40.000 0.00 0.00 32.13 2.17
1498 1614 1.331399 GGAGGTGGAGGTGGTAGCTC 61.331 65.000 0.00 0.00 41.73 4.09
1506 1622 2.122954 GAGGGTGGAGGTGGAGGT 59.877 66.667 0.00 0.00 0.00 3.85
1507 1623 3.077556 CGAGGGTGGAGGTGGAGG 61.078 72.222 0.00 0.00 0.00 4.30
1508 1624 2.037367 TCGAGGGTGGAGGTGGAG 59.963 66.667 0.00 0.00 0.00 3.86
1509 1625 2.283676 GTCGAGGGTGGAGGTGGA 60.284 66.667 0.00 0.00 0.00 4.02
1510 1626 2.172483 CTTGTCGAGGGTGGAGGTGG 62.172 65.000 0.00 0.00 0.00 4.61
1511 1627 1.293498 CTTGTCGAGGGTGGAGGTG 59.707 63.158 0.00 0.00 0.00 4.00
1522 1639 4.219944 ACTGAAAGCCTATGTACTTGTCGA 59.780 41.667 0.00 0.00 37.60 4.20
1525 1642 5.228945 ACACTGAAAGCCTATGTACTTGT 57.771 39.130 0.00 0.00 37.60 3.16
1533 1650 8.870075 AGAATTTTCTTACACTGAAAGCCTAT 57.130 30.769 0.00 0.00 32.13 2.57
1587 1710 7.630026 CAAATGCCATTCATCTGAAATCATTG 58.370 34.615 13.43 2.69 37.61 2.82
1632 1755 9.814899 TGCCCAATATTTTTATTACACATCAAG 57.185 29.630 0.00 0.00 0.00 3.02
1665 1788 2.703416 TGCAAACAACAACAATTGGCA 58.297 38.095 10.83 3.31 33.63 4.92
1667 1790 4.096081 ACCAATGCAAACAACAACAATTGG 59.904 37.500 10.83 9.40 41.11 3.16
1675 1798 5.718724 TGATCATACCAATGCAAACAACA 57.281 34.783 0.00 0.00 32.76 3.33
1741 1864 3.609373 CACATCGCAAGCCTATGTTTTTG 59.391 43.478 5.29 0.00 31.60 2.44
1747 1873 1.153597 TCGCACATCGCAAGCCTATG 61.154 55.000 1.72 1.72 42.60 2.23
1839 1965 7.683437 AAATTACCCTTTTCGGAGAGTTTAG 57.317 36.000 0.00 0.00 38.43 1.85
1844 1970 5.106277 GGACAAAATTACCCTTTTCGGAGAG 60.106 44.000 0.00 0.00 38.43 3.20
1848 1974 4.857509 TGGACAAAATTACCCTTTTCGG 57.142 40.909 0.00 0.00 0.00 4.30
1853 1979 8.655901 ACATGTTTATTGGACAAAATTACCCTT 58.344 29.630 0.00 0.00 0.00 3.95
1862 1988 5.069648 TGAAGGCACATGTTTATTGGACAAA 59.930 36.000 0.00 0.00 0.00 2.83
1910 2036 4.541705 TCTCCAAACCAAATTGAGGACAA 58.458 39.130 4.32 0.00 40.42 3.18
1912 2038 4.398319 TCTCTCCAAACCAAATTGAGGAC 58.602 43.478 4.32 0.00 31.84 3.85
1933 2059 6.813152 CCATGGTCCAATTTGTGTTAGAATTC 59.187 38.462 2.57 0.00 0.00 2.17
1935 2061 5.337491 GCCATGGTCCAATTTGTGTTAGAAT 60.337 40.000 14.67 0.00 0.00 2.40
1956 2082 6.952773 AATAAGTAAGAAGTTGTTGTGCCA 57.047 33.333 0.00 0.00 0.00 4.92
1958 2084 8.531530 CAACAAATAAGTAAGAAGTTGTTGTGC 58.468 33.333 16.03 0.00 45.32 4.57
1972 2098 9.787435 ATGGAAGTGAAGTACAACAAATAAGTA 57.213 29.630 0.00 0.00 0.00 2.24
1973 2099 8.691661 ATGGAAGTGAAGTACAACAAATAAGT 57.308 30.769 0.00 0.00 0.00 2.24
1984 2110 6.574350 AGTGTATGCTATGGAAGTGAAGTAC 58.426 40.000 0.00 0.00 0.00 2.73
2000 2126 1.502231 CATCCCGCAGTAGTGTATGC 58.498 55.000 0.00 0.00 39.09 3.14
2003 2129 0.459899 CAGCATCCCGCAGTAGTGTA 59.540 55.000 0.00 0.00 46.13 2.90
2004 2130 1.219124 CAGCATCCCGCAGTAGTGT 59.781 57.895 0.00 0.00 46.13 3.55
2005 2131 2.176273 GCAGCATCCCGCAGTAGTG 61.176 63.158 0.00 0.00 46.13 2.74
2006 2132 1.043116 TAGCAGCATCCCGCAGTAGT 61.043 55.000 0.00 0.00 46.13 2.73
2007 2133 0.104855 TTAGCAGCATCCCGCAGTAG 59.895 55.000 0.00 0.00 46.13 2.57
2008 2134 0.179084 GTTAGCAGCATCCCGCAGTA 60.179 55.000 0.00 0.00 46.13 2.74
2009 2135 1.450312 GTTAGCAGCATCCCGCAGT 60.450 57.895 0.00 0.00 46.13 4.40
2010 2136 1.450134 TGTTAGCAGCATCCCGCAG 60.450 57.895 0.00 0.00 46.13 5.18
2011 2137 1.745115 GTGTTAGCAGCATCCCGCA 60.745 57.895 0.00 0.00 46.13 5.69
2012 2138 2.813179 CGTGTTAGCAGCATCCCGC 61.813 63.158 0.00 0.00 42.91 6.13
2013 2139 1.153647 TCGTGTTAGCAGCATCCCG 60.154 57.895 0.00 0.00 0.00 5.14
2014 2140 0.391130 TGTCGTGTTAGCAGCATCCC 60.391 55.000 0.00 0.00 0.00 3.85
2015 2141 0.721718 GTGTCGTGTTAGCAGCATCC 59.278 55.000 0.00 0.00 0.00 3.51
2016 2142 1.714794 AGTGTCGTGTTAGCAGCATC 58.285 50.000 0.00 0.00 0.00 3.91
2017 2143 3.526931 ATAGTGTCGTGTTAGCAGCAT 57.473 42.857 0.00 0.00 0.00 3.79
2018 2144 4.443913 TTATAGTGTCGTGTTAGCAGCA 57.556 40.909 0.00 0.00 0.00 4.41
2019 2145 5.041287 TGATTATAGTGTCGTGTTAGCAGC 58.959 41.667 0.00 0.00 0.00 5.25
2020 2146 6.495706 TCTGATTATAGTGTCGTGTTAGCAG 58.504 40.000 0.00 0.00 0.00 4.24
2021 2147 6.317893 TCTCTGATTATAGTGTCGTGTTAGCA 59.682 38.462 0.00 0.00 0.00 3.49
2022 2148 6.633634 GTCTCTGATTATAGTGTCGTGTTAGC 59.366 42.308 0.00 0.00 0.00 3.09
2023 2149 7.133513 GGTCTCTGATTATAGTGTCGTGTTAG 58.866 42.308 0.00 0.00 0.00 2.34
2024 2150 6.600427 TGGTCTCTGATTATAGTGTCGTGTTA 59.400 38.462 0.00 0.00 0.00 2.41
2025 2151 5.417894 TGGTCTCTGATTATAGTGTCGTGTT 59.582 40.000 0.00 0.00 0.00 3.32
2026 2152 4.948004 TGGTCTCTGATTATAGTGTCGTGT 59.052 41.667 0.00 0.00 0.00 4.49
2027 2153 5.500645 TGGTCTCTGATTATAGTGTCGTG 57.499 43.478 0.00 0.00 0.00 4.35
2028 2154 6.716934 AATGGTCTCTGATTATAGTGTCGT 57.283 37.500 0.00 0.00 0.00 4.34
2029 2155 7.168302 GTCAAATGGTCTCTGATTATAGTGTCG 59.832 40.741 0.00 0.00 0.00 4.35
2030 2156 7.168302 CGTCAAATGGTCTCTGATTATAGTGTC 59.832 40.741 0.00 0.00 0.00 3.67
2031 2157 6.980978 CGTCAAATGGTCTCTGATTATAGTGT 59.019 38.462 0.00 0.00 0.00 3.55
2032 2158 7.203218 TCGTCAAATGGTCTCTGATTATAGTG 58.797 38.462 0.00 0.00 0.00 2.74
2033 2159 7.348080 TCGTCAAATGGTCTCTGATTATAGT 57.652 36.000 0.00 0.00 0.00 2.12
2034 2160 8.543774 GTTTCGTCAAATGGTCTCTGATTATAG 58.456 37.037 0.00 0.00 0.00 1.31
2035 2161 8.258007 AGTTTCGTCAAATGGTCTCTGATTATA 58.742 33.333 0.00 0.00 0.00 0.98
2036 2162 7.106239 AGTTTCGTCAAATGGTCTCTGATTAT 58.894 34.615 0.00 0.00 0.00 1.28
2037 2163 6.464222 AGTTTCGTCAAATGGTCTCTGATTA 58.536 36.000 0.00 0.00 0.00 1.75
2038 2164 5.308825 AGTTTCGTCAAATGGTCTCTGATT 58.691 37.500 0.00 0.00 0.00 2.57
2039 2165 4.899502 AGTTTCGTCAAATGGTCTCTGAT 58.100 39.130 0.00 0.00 0.00 2.90
2040 2166 4.336889 AGTTTCGTCAAATGGTCTCTGA 57.663 40.909 0.00 0.00 0.00 3.27
2041 2167 5.639506 ACATAGTTTCGTCAAATGGTCTCTG 59.360 40.000 0.00 0.00 0.00 3.35
2042 2168 5.639506 CACATAGTTTCGTCAAATGGTCTCT 59.360 40.000 0.00 0.00 0.00 3.10
2043 2169 5.671329 GCACATAGTTTCGTCAAATGGTCTC 60.671 44.000 0.00 0.00 0.00 3.36
2044 2170 4.154195 GCACATAGTTTCGTCAAATGGTCT 59.846 41.667 0.00 0.00 0.00 3.85
2045 2171 4.403453 GCACATAGTTTCGTCAAATGGTC 58.597 43.478 0.00 0.00 0.00 4.02
2046 2172 3.120338 CGCACATAGTTTCGTCAAATGGT 60.120 43.478 0.00 0.00 0.00 3.55
2047 2173 3.124466 TCGCACATAGTTTCGTCAAATGG 59.876 43.478 0.00 0.00 0.00 3.16
2048 2174 4.320667 TCGCACATAGTTTCGTCAAATG 57.679 40.909 0.00 0.00 0.00 2.32
2049 2175 4.391830 ACATCGCACATAGTTTCGTCAAAT 59.608 37.500 0.00 0.00 0.00 2.32
2050 2176 3.743911 ACATCGCACATAGTTTCGTCAAA 59.256 39.130 0.00 0.00 0.00 2.69
2051 2177 3.322369 ACATCGCACATAGTTTCGTCAA 58.678 40.909 0.00 0.00 0.00 3.18
2052 2178 2.954316 ACATCGCACATAGTTTCGTCA 58.046 42.857 0.00 0.00 0.00 4.35
2053 2179 5.637104 AATACATCGCACATAGTTTCGTC 57.363 39.130 0.00 0.00 0.00 4.20
2054 2180 7.358105 CGATTAATACATCGCACATAGTTTCGT 60.358 37.037 0.00 0.00 39.69 3.85
2055 2181 6.942767 CGATTAATACATCGCACATAGTTTCG 59.057 38.462 0.00 0.00 39.69 3.46
2068 2194 7.861630 ACACCACTATTTGCGATTAATACATC 58.138 34.615 0.00 0.00 0.00 3.06
2069 2195 7.801716 ACACCACTATTTGCGATTAATACAT 57.198 32.000 0.00 0.00 0.00 2.29
2070 2196 8.719560 TTACACCACTATTTGCGATTAATACA 57.280 30.769 0.00 0.00 0.00 2.29
2071 2197 9.037737 TCTTACACCACTATTTGCGATTAATAC 57.962 33.333 0.00 0.00 0.00 1.89
2072 2198 9.602568 TTCTTACACCACTATTTGCGATTAATA 57.397 29.630 0.00 0.00 0.00 0.98
2073 2199 8.500753 TTCTTACACCACTATTTGCGATTAAT 57.499 30.769 0.00 0.00 0.00 1.40
2074 2200 7.908827 TTCTTACACCACTATTTGCGATTAA 57.091 32.000 0.00 0.00 0.00 1.40
2075 2201 7.908827 TTTCTTACACCACTATTTGCGATTA 57.091 32.000 0.00 0.00 0.00 1.75
2076 2202 6.811253 TTTCTTACACCACTATTTGCGATT 57.189 33.333 0.00 0.00 0.00 3.34
2077 2203 6.349033 GGTTTTCTTACACCACTATTTGCGAT 60.349 38.462 0.00 0.00 32.74 4.58
2078 2204 5.049267 GGTTTTCTTACACCACTATTTGCGA 60.049 40.000 0.00 0.00 32.74 5.10
2079 2205 5.151389 GGTTTTCTTACACCACTATTTGCG 58.849 41.667 0.00 0.00 32.74 4.85
2080 2206 5.151389 CGGTTTTCTTACACCACTATTTGC 58.849 41.667 0.00 0.00 31.84 3.68
2081 2207 6.017770 TGACGGTTTTCTTACACCACTATTTG 60.018 38.462 0.00 0.00 31.84 2.32
2082 2208 6.056884 TGACGGTTTTCTTACACCACTATTT 58.943 36.000 0.00 0.00 31.84 1.40
2083 2209 5.613329 TGACGGTTTTCTTACACCACTATT 58.387 37.500 0.00 0.00 31.84 1.73
2084 2210 5.217978 TGACGGTTTTCTTACACCACTAT 57.782 39.130 0.00 0.00 31.84 2.12
2085 2211 4.669206 TGACGGTTTTCTTACACCACTA 57.331 40.909 0.00 0.00 31.84 2.74
2086 2212 3.547054 TGACGGTTTTCTTACACCACT 57.453 42.857 0.00 0.00 31.84 4.00
2087 2213 4.619437 TTTGACGGTTTTCTTACACCAC 57.381 40.909 0.00 0.00 31.84 4.16
2088 2214 5.640189 TTTTTGACGGTTTTCTTACACCA 57.360 34.783 0.00 0.00 31.84 4.17
2089 2215 6.267070 TCATTTTTGACGGTTTTCTTACACC 58.733 36.000 0.00 0.00 0.00 4.16
2090 2216 7.924103 ATCATTTTTGACGGTTTTCTTACAC 57.076 32.000 0.00 0.00 0.00 2.90
2091 2217 9.619316 CATATCATTTTTGACGGTTTTCTTACA 57.381 29.630 0.00 0.00 0.00 2.41
2092 2218 9.834628 TCATATCATTTTTGACGGTTTTCTTAC 57.165 29.630 0.00 0.00 0.00 2.34
2094 2220 9.191995 GTTCATATCATTTTTGACGGTTTTCTT 57.808 29.630 0.00 0.00 0.00 2.52
2095 2221 7.812669 GGTTCATATCATTTTTGACGGTTTTCT 59.187 33.333 0.00 0.00 0.00 2.52
2096 2222 7.201316 CGGTTCATATCATTTTTGACGGTTTTC 60.201 37.037 0.00 0.00 0.00 2.29
2097 2223 6.584563 CGGTTCATATCATTTTTGACGGTTTT 59.415 34.615 0.00 0.00 0.00 2.43
2098 2224 6.090129 CGGTTCATATCATTTTTGACGGTTT 58.910 36.000 0.00 0.00 0.00 3.27
2099 2225 5.182380 ACGGTTCATATCATTTTTGACGGTT 59.818 36.000 0.00 0.00 0.00 4.44
2100 2226 4.698304 ACGGTTCATATCATTTTTGACGGT 59.302 37.500 0.00 0.00 0.00 4.83
2101 2227 5.064707 AGACGGTTCATATCATTTTTGACGG 59.935 40.000 0.00 0.00 0.00 4.79
2102 2228 5.959527 CAGACGGTTCATATCATTTTTGACG 59.040 40.000 0.00 0.00 0.00 4.35
2103 2229 5.739161 GCAGACGGTTCATATCATTTTTGAC 59.261 40.000 0.00 0.00 0.00 3.18
2104 2230 5.447144 CGCAGACGGTTCATATCATTTTTGA 60.447 40.000 0.00 0.00 34.97 2.69
2105 2231 4.730042 CGCAGACGGTTCATATCATTTTTG 59.270 41.667 0.00 0.00 34.97 2.44
2106 2232 4.634004 TCGCAGACGGTTCATATCATTTTT 59.366 37.500 0.00 0.00 40.63 1.94
2107 2233 4.188462 TCGCAGACGGTTCATATCATTTT 58.812 39.130 0.00 0.00 40.63 1.82
2108 2234 3.792401 TCGCAGACGGTTCATATCATTT 58.208 40.909 0.00 0.00 40.63 2.32
2109 2235 3.452755 TCGCAGACGGTTCATATCATT 57.547 42.857 0.00 0.00 40.63 2.57
2110 2236 3.320626 CATCGCAGACGGTTCATATCAT 58.679 45.455 0.00 0.00 42.51 2.45
2111 2237 2.545742 CCATCGCAGACGGTTCATATCA 60.546 50.000 0.00 0.00 42.51 2.15
2112 2238 2.061773 CCATCGCAGACGGTTCATATC 58.938 52.381 0.00 0.00 42.51 1.63
2113 2239 1.873903 GCCATCGCAGACGGTTCATAT 60.874 52.381 0.00 0.00 44.66 1.78
2114 2240 0.529773 GCCATCGCAGACGGTTCATA 60.530 55.000 0.00 0.00 44.66 2.15
2131 2257 7.706159 TCTGAATTGTGTTTGATGTATATGCC 58.294 34.615 0.00 0.00 0.00 4.40
2132 2258 9.740239 AATCTGAATTGTGTTTGATGTATATGC 57.260 29.630 0.00 0.00 0.00 3.14
2137 2263 9.725019 ACTCTAATCTGAATTGTGTTTGATGTA 57.275 29.630 0.00 0.00 0.00 2.29
2141 2267 7.229306 AGCAACTCTAATCTGAATTGTGTTTGA 59.771 33.333 0.00 0.00 0.00 2.69
2144 2270 7.013655 ACAAGCAACTCTAATCTGAATTGTGTT 59.986 33.333 0.00 0.00 0.00 3.32
2146 2272 6.800408 CACAAGCAACTCTAATCTGAATTGTG 59.200 38.462 0.00 0.00 38.22 3.33
2150 2276 4.093998 CGCACAAGCAACTCTAATCTGAAT 59.906 41.667 0.00 0.00 42.27 2.57
2152 2278 2.995939 CGCACAAGCAACTCTAATCTGA 59.004 45.455 0.00 0.00 42.27 3.27
2153 2279 2.995939 TCGCACAAGCAACTCTAATCTG 59.004 45.455 0.00 0.00 42.27 2.90
2155 2281 5.235186 ACATATCGCACAAGCAACTCTAATC 59.765 40.000 0.00 0.00 42.27 1.75
2156 2282 5.007039 CACATATCGCACAAGCAACTCTAAT 59.993 40.000 0.00 0.00 42.27 1.73
2157 2283 4.329801 CACATATCGCACAAGCAACTCTAA 59.670 41.667 0.00 0.00 42.27 2.10
2158 2284 3.865164 CACATATCGCACAAGCAACTCTA 59.135 43.478 0.00 0.00 42.27 2.43
2160 2286 2.223112 CCACATATCGCACAAGCAACTC 60.223 50.000 0.00 0.00 42.27 3.01
2161 2287 1.739466 CCACATATCGCACAAGCAACT 59.261 47.619 0.00 0.00 42.27 3.16
2162 2288 1.795162 GCCACATATCGCACAAGCAAC 60.795 52.381 0.00 0.00 42.27 4.17
2163 2289 0.451383 GCCACATATCGCACAAGCAA 59.549 50.000 0.00 0.00 42.27 3.91
2164 2290 0.676151 TGCCACATATCGCACAAGCA 60.676 50.000 0.00 0.00 42.27 3.91
2166 2292 2.871633 TGTATGCCACATATCGCACAAG 59.128 45.455 0.00 0.00 37.93 3.16
2167 2293 2.871633 CTGTATGCCACATATCGCACAA 59.128 45.455 0.00 0.00 37.93 3.33
2171 2297 3.130633 TCAACTGTATGCCACATATCGC 58.869 45.455 0.00 0.00 36.29 4.58
2172 2298 5.233225 AGATCAACTGTATGCCACATATCG 58.767 41.667 0.00 0.00 36.29 2.92
2173 2299 7.543868 GTCTAGATCAACTGTATGCCACATATC 59.456 40.741 0.00 0.00 36.29 1.63
2178 2304 4.045104 CGTCTAGATCAACTGTATGCCAC 58.955 47.826 0.00 0.00 0.00 5.01
2179 2305 3.951680 TCGTCTAGATCAACTGTATGCCA 59.048 43.478 0.00 0.00 0.00 4.92
2181 2307 5.457148 CAGTTCGTCTAGATCAACTGTATGC 59.543 44.000 25.17 0.27 40.51 3.14
2191 2317 3.499048 TCGCAAACAGTTCGTCTAGATC 58.501 45.455 0.00 0.00 0.00 2.75
2193 2319 3.057806 TCATCGCAAACAGTTCGTCTAGA 60.058 43.478 0.00 0.00 0.00 2.43
2194 2320 3.242518 TCATCGCAAACAGTTCGTCTAG 58.757 45.455 0.00 0.00 0.00 2.43
2195 2321 3.242518 CTCATCGCAAACAGTTCGTCTA 58.757 45.455 0.00 0.00 0.00 2.59
2196 2322 2.061773 CTCATCGCAAACAGTTCGTCT 58.938 47.619 0.00 0.00 0.00 4.18
2199 2325 3.280532 GCTCATCGCAAACAGTTCG 57.719 52.632 0.00 0.00 38.92 3.95
2210 2336 5.626543 GCCATTTATGTTGTTATGCTCATCG 59.373 40.000 0.00 0.00 0.00 3.84
2214 2340 6.145535 GCTAGCCATTTATGTTGTTATGCTC 58.854 40.000 2.29 0.00 0.00 4.26
2217 2343 6.389830 TGGCTAGCCATTTATGTTGTTATG 57.610 37.500 32.88 0.00 41.89 1.90
2233 2360 3.251004 GCACACACCTTAATATGGCTAGC 59.749 47.826 6.04 6.04 0.00 3.42
2234 2361 3.494626 CGCACACACCTTAATATGGCTAG 59.505 47.826 0.00 0.00 0.00 3.42
2239 2366 7.010697 TGTAAATCGCACACACCTTAATATG 57.989 36.000 0.00 0.00 0.00 1.78
2241 2368 6.167685 ACTGTAAATCGCACACACCTTAATA 58.832 36.000 0.00 0.00 0.00 0.98
2244 2371 3.997762 ACTGTAAATCGCACACACCTTA 58.002 40.909 0.00 0.00 0.00 2.69
2259 2386 4.607293 AGTGCATCTGAGTGAACTGTAA 57.393 40.909 0.00 0.00 36.61 2.41
2260 2387 5.921962 ATAGTGCATCTGAGTGAACTGTA 57.078 39.130 9.59 0.00 38.46 2.74
2262 2389 5.866075 CAAATAGTGCATCTGAGTGAACTG 58.134 41.667 9.59 0.00 38.46 3.16
2277 2405 6.245115 TGTCTTGTCTGATTGCAAATAGTG 57.755 37.500 1.71 0.00 0.00 2.74
2281 2409 3.570975 TGCTGTCTTGTCTGATTGCAAAT 59.429 39.130 1.71 0.00 0.00 2.32
2282 2410 2.950975 TGCTGTCTTGTCTGATTGCAAA 59.049 40.909 1.71 0.00 0.00 3.68
2288 2416 4.063689 CTGTTTCTGCTGTCTTGTCTGAT 58.936 43.478 0.00 0.00 0.00 2.90
2290 2418 3.201290 ACTGTTTCTGCTGTCTTGTCTG 58.799 45.455 0.00 0.00 0.00 3.51
2293 2421 3.609853 TGAACTGTTTCTGCTGTCTTGT 58.390 40.909 0.00 0.00 32.36 3.16
2299 2427 5.879237 TGTTAAGTTGAACTGTTTCTGCTG 58.121 37.500 0.00 0.00 32.36 4.41
2301 2429 6.551736 TCTTGTTAAGTTGAACTGTTTCTGC 58.448 36.000 0.00 0.00 32.36 4.26
2309 2437 6.597672 TCACACACATCTTGTTAAGTTGAACT 59.402 34.615 0.00 0.00 35.67 3.01
2341 2469 9.261180 CACATTTCTGATTACGGACTTATATGT 57.739 33.333 0.00 0.00 0.00 2.29
2344 2472 7.223971 GCACACATTTCTGATTACGGACTTATA 59.776 37.037 0.00 0.00 0.00 0.98
2348 2476 3.684788 GCACACATTTCTGATTACGGACT 59.315 43.478 0.00 0.00 0.00 3.85
2371 2499 7.591006 ATCGTTTGTGTTATTATCTGTCGTT 57.409 32.000 0.00 0.00 0.00 3.85
2373 2501 6.408039 GCAATCGTTTGTGTTATTATCTGTCG 59.592 38.462 7.97 0.00 35.17 4.35
2377 2505 6.094048 AGCAGCAATCGTTTGTGTTATTATCT 59.906 34.615 7.97 0.00 35.17 1.98
2388 2516 4.495472 CGGTTTATTAGCAGCAATCGTTTG 59.505 41.667 1.73 1.73 35.85 2.93
2390 2518 3.687698 ACGGTTTATTAGCAGCAATCGTT 59.312 39.130 0.00 0.00 0.00 3.85
2408 2536 1.251527 TTGCCCACAAAACACACGGT 61.252 50.000 0.00 0.00 31.21 4.83
2411 2539 0.995728 CGTTTGCCCACAAAACACAC 59.004 50.000 0.00 0.00 46.94 3.82
2417 2545 4.823276 CAAGCGTTTGCCCACAAA 57.177 50.000 0.00 0.00 43.45 2.83
2434 2562 4.188247 TCACTGACAACTGTATACCAGC 57.812 45.455 0.00 0.00 45.68 4.85
2453 2581 7.723616 ACCCATCGGTGATGATTTTATTAATCA 59.276 33.333 8.32 2.99 42.48 2.57
2454 2582 8.110860 ACCCATCGGTGATGATTTTATTAATC 57.889 34.615 8.32 0.00 42.48 1.75
2458 2586 5.301805 GGAACCCATCGGTGATGATTTTATT 59.698 40.000 8.32 0.00 43.71 1.40
2459 2587 4.827284 GGAACCCATCGGTGATGATTTTAT 59.173 41.667 8.32 0.00 43.71 1.40
2461 2589 3.023832 GGAACCCATCGGTGATGATTTT 58.976 45.455 8.32 0.00 43.71 1.82
2478 2606 3.081804 CACATGGACCAAACTAGGGAAC 58.918 50.000 0.00 0.00 0.00 3.62
2488 2616 0.464554 TCACAACGCACATGGACCAA 60.465 50.000 0.00 0.00 0.00 3.67
2493 2621 1.062258 GCAAATCACAACGCACATGG 58.938 50.000 0.00 0.00 0.00 3.66
2495 2623 1.068333 GGAGCAAATCACAACGCACAT 60.068 47.619 0.00 0.00 0.00 3.21
2502 2630 3.006430 TCTGTAGACGGAGCAAATCACAA 59.994 43.478 0.00 0.00 0.00 3.33
2510 2638 1.684450 TGTTGTTCTGTAGACGGAGCA 59.316 47.619 4.12 4.12 40.05 4.26
2511 2639 2.433868 TGTTGTTCTGTAGACGGAGC 57.566 50.000 0.00 0.00 33.70 4.70
2512 2640 4.174411 TGATGTTGTTCTGTAGACGGAG 57.826 45.455 0.00 0.00 32.05 4.63
2513 2641 4.801330 ATGATGTTGTTCTGTAGACGGA 57.199 40.909 0.00 0.00 0.00 4.69
2514 2642 9.343103 GTATATATGATGTTGTTCTGTAGACGG 57.657 37.037 0.00 0.00 0.00 4.79
2562 2690 7.009174 CCAATGTAATTCGATGTTTAACTTGGC 59.991 37.037 0.00 0.00 31.22 4.52
2567 2695 6.252655 GCCACCAATGTAATTCGATGTTTAAC 59.747 38.462 0.00 0.00 31.22 2.01
2573 2701 4.816385 ACTAGCCACCAATGTAATTCGATG 59.184 41.667 0.00 0.00 31.22 3.84
2577 2705 5.878116 TGTGTACTAGCCACCAATGTAATTC 59.122 40.000 9.86 0.00 31.22 2.17
2586 2714 2.028476 GTCATGTGTGTACTAGCCACCA 60.028 50.000 9.86 8.11 31.71 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.