AutoCloner

Multiple sequence alignment - TraesCS7D01G448900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G448900	chr7D	100.000	2591	0	0	1	2591	568418806	568421396	0.000000e+00	4785.0
1	TraesCS7D01G448900	chr7D	81.057	776	86	46	862	1585	7466268	7465502	1.740000e-156	562.0
2	TraesCS7D01G448900	chr7D	81.453	647	95	16	1593	2228	568699168	568698536	8.270000e-140	507.0
3	TraesCS7D01G448900	chr7D	80.804	448	44	20	1150	1571	7458511	7458080	1.940000e-81	313.0
4	TraesCS7D01G448900	chr7D	91.489	94	7	1	1099	1192	9304865	9304773	7.530000e-26	128.0
5	TraesCS7D01G448900	chr7D	96.154	78	3	0	1108	1185	10507705	10507782	7.530000e-26	128.0
6	TraesCS7D01G448900	chr7A	92.778	2257	95	22	2	2219	657154067	657156294	0.000000e+00	3203.0
7	TraesCS7D01G448900	chr7A	85.577	520	49	15	1093	1586	8404208	8403689	2.950000e-144	521.0
8	TraesCS7D01G448900	chr7A	85.577	520	49	15	1093	1586	8411020	8410501	2.950000e-144	521.0
9	TraesCS7D01G448900	chr7A	82.394	568	81	16	1671	2228	657430952	657431510	6.490000e-131	477.0
10	TraesCS7D01G448900	chr7A	89.206	315	19	6	2222	2536	657156497	657156796	1.880000e-101	379.0
11	TraesCS7D01G448900	chr7A	83.193	238	31	5	1408	1640	657424527	657424760	2.610000e-50	209.0
12	TraesCS7D01G448900	chr7B	94.072	1670	56	16	1	1663	624245368	624247001	0.000000e+00	2495.0
13	TraesCS7D01G448900	chr7B	85.106	470	65	3	1761	2228	624791318	624791784	2.330000e-130	475.0
14	TraesCS7D01G448900	chr7B	92.195	205	13	1	1658	1862	624247479	624247680	1.170000e-73	287.0
15	TraesCS7D01G448900	chr7B	83.708	178	22	2	1506	1683	624791115	624791285	7.420000e-36	161.0
16	TraesCS7D01G448900	chr4A	81.398	758	86	38	862	1581	732789535	732788795	3.740000e-158	568.0
17	TraesCS7D01G448900	chr5A	79.140	465	80	11	1770	2228	60246827	60246374	3.240000e-79	305.0
18	TraesCS7D01G448900	chr5A	97.826	46	1	0	2545	2590	708724486	708724441	2.140000e-11	80.5
19	TraesCS7D01G448900	chr5A	94.118	51	3	0	2541	2591	662667874	662667824	7.690000e-11	78.7
20	TraesCS7D01G448900	chr6D	91.379	58	3	2	2535	2590	79347025	79346968	7.690000e-11	78.7
21	TraesCS7D01G448900	chr6D	95.833	48	1	1	2544	2590	6013717	6013670	2.760000e-10	76.8
22	TraesCS7D01G448900	chr6D	94.000	50	3	0	2541	2590	118629098	118629147	2.760000e-10	76.8
23	TraesCS7D01G448900	chr3D	94.000	50	3	0	2541	2590	95568173	95568222	2.760000e-10	76.8
24	TraesCS7D01G448900	chr2D	95.745	47	2	0	2544	2590	595489435	595489389	2.760000e-10	76.8
25	TraesCS7D01G448900	chr1D	95.745	47	2	0	2544	2590	404282252	404282206	2.760000e-10	76.8
26	TraesCS7D01G448900	chr1D	95.745	47	2	0	2545	2591	464557231	464557185	2.760000e-10	76.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G448900	chr7D	568418806	568421396	2590	False	4785	4785	100.0000	1	2591	1	chr7D.!!$F2	2590
1	TraesCS7D01G448900	chr7D	7465502	7466268	766	True	562	562	81.0570	862	1585	1	chr7D.!!$R2	723
2	TraesCS7D01G448900	chr7D	568698536	568699168	632	True	507	507	81.4530	1593	2228	1	chr7D.!!$R4	635
3	TraesCS7D01G448900	chr7A	657154067	657156796	2729	False	1791	3203	90.9920	2	2536	2	chr7A.!!$F3	2534
4	TraesCS7D01G448900	chr7A	8403689	8404208	519	True	521	521	85.5770	1093	1586	1	chr7A.!!$R1	493
5	TraesCS7D01G448900	chr7A	8410501	8411020	519	True	521	521	85.5770	1093	1586	1	chr7A.!!$R2	493
6	TraesCS7D01G448900	chr7A	657430952	657431510	558	False	477	477	82.3940	1671	2228	1	chr7A.!!$F2	557
7	TraesCS7D01G448900	chr7B	624245368	624247680	2312	False	1391	2495	93.1335	1	1862	2	chr7B.!!$F1	1861
8	TraesCS7D01G448900	chr7B	624791115	624791784	669	False	318	475	84.4070	1506	2228	2	chr7B.!!$F2	722
9	TraesCS7D01G448900	chr4A	732788795	732789535	740	True	568	568	81.3980	862	1581	1	chr4A.!!$R1	719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
364	367	1.41789	CCACTGAACTTGACCAGGACT	59.582	52.381	0.0	0.0	34.85	3.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2325	3171	0.528017	GAGTCGTGTGAGATCTGCCA	59.472	55.0	0.0	0.0	0.0	4.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
55	56	7.389053	CCATCTAATTTTGCTGGTCTCTATACC	59.611	40.741	0.00	0.00	40.19	2.73
163	166	2.096218	GCAGTTGACCTTGTCGTTCATC	60.096	50.000	0.00	0.00	34.95	2.92
164	167	3.130633	CAGTTGACCTTGTCGTTCATCA	58.869	45.455	0.00	0.00	34.95	3.07
165	168	3.748048	CAGTTGACCTTGTCGTTCATCAT	59.252	43.478	0.00	0.00	34.95	2.45
166	169	3.997021	AGTTGACCTTGTCGTTCATCATC	59.003	43.478	0.00	0.00	34.95	2.92
171	174	2.541346	CCTTGTCGTTCATCATCCATCG	59.459	50.000	0.00	0.00	0.00	3.84
364	367	1.417890	CCACTGAACTTGACCAGGACT	59.582	52.381	0.00	0.00	34.85	3.85
387	390	2.975410	TCTTGCAAGCACAATCTTCG	57.025	45.000	21.99	0.00	0.00	3.79
443	446	5.801444	GCAAACAAACGTAACCTACAAAACT	59.199	36.000	0.00	0.00	0.00	2.66
569	574	5.835257	TGTACGGCAATTAGTACATACTCC	58.165	41.667	13.40	0.00	45.49	3.85
570	575	5.595542	TGTACGGCAATTAGTACATACTCCT	59.404	40.000	13.40	0.00	45.49	3.69
571	576	6.772233	TGTACGGCAATTAGTACATACTCCTA	59.228	38.462	13.40	0.00	45.49	2.94
572	577	6.912951	ACGGCAATTAGTACATACTCCTAT	57.087	37.500	0.00	0.00	37.73	2.57
609	644	2.798499	GCTGACGCCGATTAGCTTTAGA	60.798	50.000	0.00	0.00	33.53	2.10
615	650	4.270325	ACGCCGATTAGCTTTAGATTGAAC	59.730	41.667	0.00	0.00	0.00	3.18
800	849	1.676529	CCGTACGTCCTCATGATCACT	59.323	52.381	15.21	0.00	0.00	3.41
822	871	6.199908	CACTAGAAATCAACGGCTGAGATTAG	59.800	42.308	15.04	12.21	37.52	1.73
969	1020	5.853936	TGGGATTAACCAACAGATAGATCG	58.146	41.667	0.00	0.00	41.20	3.69
1076	1190	1.592743	GCAGCAATGGTGGCAATGA	59.407	52.632	14.61	0.00	0.00	2.57
1404	1518	2.282958	ACCGTCTCCTTCTGCCGA	60.283	61.111	0.00	0.00	0.00	5.54
1672	2293	3.675225	CCTGTAGTGTTCGTCAATGACAG	59.325	47.826	14.24	6.55	31.94	3.51
1692	2320	7.451732	TGACAGTCTCAAGTTACTAGTAGTCT	58.548	38.462	5.96	3.59	0.00	3.24
1693	2321	8.591940	TGACAGTCTCAAGTTACTAGTAGTCTA	58.408	37.037	5.96	0.00	0.00	2.59
1694	2322	9.090692	GACAGTCTCAAGTTACTAGTAGTCTAG	57.909	40.741	5.96	2.67	46.43	2.43
1757	2385	1.325640	CAAGTTCCATCGACGATGCTG	59.674	52.381	28.45	17.69	38.59	4.41
1758	2386	0.532573	AGTTCCATCGACGATGCTGT	59.467	50.000	28.45	12.15	38.59	4.40
1810	2451	3.288308	CTCCTGCTCGCCGTTGTCT	62.288	63.158	0.00	0.00	0.00	3.41
1916	2560	0.965866	ATCGAGGCAGAAGTCGGTGA	60.966	55.000	0.00	0.00	36.81	4.02
1971	2615	1.949465	AACGACAGGGAGTTGAACAC	58.051	50.000	0.00	0.00	35.47	3.32
1984	2628	3.518419	GAACACGGGCGGGTACACA	62.518	63.158	0.00	0.00	0.00	3.72
2060	2704	2.122413	ACCCCAGAGCAGACCACA	60.122	61.111	0.00	0.00	0.00	4.17
2118	2762	2.345760	GCCCAGCCATGTCTGTTGG	61.346	63.158	2.64	0.00	37.31	3.77
2119	2763	1.679977	CCCAGCCATGTCTGTTGGG	60.680	63.158	2.64	5.55	38.37	4.12
2120	2764	2.345760	CCAGCCATGTCTGTTGGGC	61.346	63.158	2.64	0.00	46.77	5.36
2122	2766	3.443045	GCCATGTCTGTTGGGCGG	61.443	66.667	0.00	0.00	36.58	6.13
2124	2768	3.443045	CATGTCTGTTGGGCGGGC	61.443	66.667	0.00	0.00	0.00	6.13
2125	2769	3.965258	ATGTCTGTTGGGCGGGCA	61.965	61.111	3.27	0.00	42.98	5.36
2126	2770	4.947147	TGTCTGTTGGGCGGGCAC	62.947	66.667	3.27	0.00	32.28	5.01
2325	3171	2.113243	GACGAGGAAGGTGGCCAAGT	62.113	60.000	7.24	0.00	0.00	3.16
2341	3187	0.969149	AAGTGGCAGATCTCACACGA	59.031	50.000	14.93	0.00	38.78	4.35
2351	3197	4.325741	CAGATCTCACACGACTCACATTTC	59.674	45.833	0.00	0.00	0.00	2.17
2374	3220	3.057245	GTGAGATACATGCGAGCTATGGA	60.057	47.826	0.00	0.00	0.00	3.41
2402	3248	0.258484	TGGCCCACCCAGATGTATTG	59.742	55.000	0.00	0.00	39.18	1.90
2443	3289	8.928270	ACGTATTTCAGAGTTAAATCACTAGG	57.072	34.615	5.62	0.00	0.00	3.02
2444	3290	7.491696	ACGTATTTCAGAGTTAAATCACTAGGC	59.508	37.037	5.62	0.00	0.00	3.93
2448	3294	4.113354	CAGAGTTAAATCACTAGGCGGAC	58.887	47.826	5.62	0.00	0.00	4.79
2449	3295	3.767673	AGAGTTAAATCACTAGGCGGACA	59.232	43.478	5.62	0.00	0.00	4.02
2459	3305	1.405821	CTAGGCGGACACAGGTTCTAG	59.594	57.143	0.00	0.00	0.00	2.43
2460	3306	0.542232	AGGCGGACACAGGTTCTAGT	60.542	55.000	0.00	0.00	0.00	2.57
2461	3307	1.180029	GGCGGACACAGGTTCTAGTA	58.820	55.000	0.00	0.00	0.00	1.82
2462	3308	1.755380	GGCGGACACAGGTTCTAGTAT	59.245	52.381	0.00	0.00	0.00	2.12
2463	3309	2.223758	GGCGGACACAGGTTCTAGTATC	60.224	54.545	0.00	0.00	0.00	2.24
2464	3310	2.426024	GCGGACACAGGTTCTAGTATCA	59.574	50.000	0.00	0.00	0.00	2.15
2465	3311	3.068307	GCGGACACAGGTTCTAGTATCAT	59.932	47.826	0.00	0.00	0.00	2.45
2466	3312	4.277672	GCGGACACAGGTTCTAGTATCATA	59.722	45.833	0.00	0.00	0.00	2.15
2467	3313	5.563085	GCGGACACAGGTTCTAGTATCATAG	60.563	48.000	0.00	0.00	0.00	2.23
2468	3314	5.531659	CGGACACAGGTTCTAGTATCATAGT	59.468	44.000	0.00	0.00	0.00	2.12
2469	3315	6.709397	CGGACACAGGTTCTAGTATCATAGTA	59.291	42.308	0.00	0.00	0.00	1.82
2470	3316	7.228108	CGGACACAGGTTCTAGTATCATAGTAA	59.772	40.741	0.00	0.00	0.00	2.24
2471	3317	8.910944	GGACACAGGTTCTAGTATCATAGTAAA	58.089	37.037	0.00	0.00	0.00	2.01
2536	3382	5.778862	ACTTAAGCACAAACTCTCTCTCTC	58.221	41.667	1.29	0.00	0.00	3.20
2537	3383	5.538433	ACTTAAGCACAAACTCTCTCTCTCT	59.462	40.000	1.29	0.00	0.00	3.10
2538	3384	4.519540	AAGCACAAACTCTCTCTCTCTC	57.480	45.455	0.00	0.00	0.00	3.20
2539	3385	3.766545	AGCACAAACTCTCTCTCTCTCT	58.233	45.455	0.00	0.00	0.00	3.10
2540	3386	4.151883	AGCACAAACTCTCTCTCTCTCTT	58.848	43.478	0.00	0.00	0.00	2.85
2541	3387	5.321102	AGCACAAACTCTCTCTCTCTCTTA	58.679	41.667	0.00	0.00	0.00	2.10
2542	3388	5.772672	AGCACAAACTCTCTCTCTCTCTTAA	59.227	40.000	0.00	0.00	0.00	1.85
2543	3389	6.266558	AGCACAAACTCTCTCTCTCTCTTAAA	59.733	38.462	0.00	0.00	0.00	1.52
2544	3390	7.039082	AGCACAAACTCTCTCTCTCTCTTAAAT	60.039	37.037	0.00	0.00	0.00	1.40
2545	3391	8.247562	GCACAAACTCTCTCTCTCTCTTAAATA	58.752	37.037	0.00	0.00	0.00	1.40
2546	3392	9.567848	CACAAACTCTCTCTCTCTCTTAAATAC	57.432	37.037	0.00	0.00	0.00	1.89
2547	3393	9.528489	ACAAACTCTCTCTCTCTCTTAAATACT	57.472	33.333	0.00	0.00	0.00	2.12
2549	3395	8.747538	AACTCTCTCTCTCTCTTAAATACTCC	57.252	38.462	0.00	0.00	0.00	3.85
2550	3396	7.287810	ACTCTCTCTCTCTCTTAAATACTCCC	58.712	42.308	0.00	0.00	0.00	4.30
2551	3397	7.128883	ACTCTCTCTCTCTCTTAAATACTCCCT	59.871	40.741	0.00	0.00	0.00	4.20
2552	3398	7.514721	TCTCTCTCTCTCTTAAATACTCCCTC	58.485	42.308	0.00	0.00	0.00	4.30
2553	3399	6.607019	TCTCTCTCTCTTAAATACTCCCTCC	58.393	44.000	0.00	0.00	0.00	4.30
2554	3400	5.378332	TCTCTCTCTTAAATACTCCCTCCG	58.622	45.833	0.00	0.00	0.00	4.63
2555	3401	5.104024	TCTCTCTCTTAAATACTCCCTCCGT	60.104	44.000	0.00	0.00	0.00	4.69
2556	3402	5.516984	TCTCTCTTAAATACTCCCTCCGTT	58.483	41.667	0.00	0.00	0.00	4.44
2557	3403	5.593502	TCTCTCTTAAATACTCCCTCCGTTC	59.406	44.000	0.00	0.00	0.00	3.95
2558	3404	4.648307	TCTCTTAAATACTCCCTCCGTTCC	59.352	45.833	0.00	0.00	0.00	3.62
2559	3405	3.382546	TCTTAAATACTCCCTCCGTTCCG	59.617	47.826	0.00	0.00	0.00	4.30
2560	3406	1.856629	AAATACTCCCTCCGTTCCGA	58.143	50.000	0.00	0.00	0.00	4.55
2561	3407	1.856629	AATACTCCCTCCGTTCCGAA	58.143	50.000	0.00	0.00	0.00	4.30
2562	3408	1.856629	ATACTCCCTCCGTTCCGAAA	58.143	50.000	0.00	0.00	0.00	3.46
2563	3409	1.856629	TACTCCCTCCGTTCCGAAAT	58.143	50.000	0.00	0.00	0.00	2.17
2564	3410	1.856629	ACTCCCTCCGTTCCGAAATA	58.143	50.000	0.00	0.00	0.00	1.40
2565	3411	2.395619	ACTCCCTCCGTTCCGAAATAT	58.604	47.619	0.00	0.00	0.00	1.28
2566	3412	3.569491	ACTCCCTCCGTTCCGAAATATA	58.431	45.455	0.00	0.00	0.00	0.86
2567	3413	3.962718	ACTCCCTCCGTTCCGAAATATAA	59.037	43.478	0.00	0.00	0.00	0.98
2568	3414	4.038883	ACTCCCTCCGTTCCGAAATATAAG	59.961	45.833	0.00	0.00	0.00	1.73
2569	3415	3.962718	TCCCTCCGTTCCGAAATATAAGT	59.037	43.478	0.00	0.00	0.00	2.24
2570	3416	4.038402	TCCCTCCGTTCCGAAATATAAGTC	59.962	45.833	0.00	0.00	0.00	3.01
2571	3417	4.038883	CCCTCCGTTCCGAAATATAAGTCT	59.961	45.833	0.00	0.00	0.00	3.24
2572	3418	5.452917	CCCTCCGTTCCGAAATATAAGTCTT	60.453	44.000	0.00	0.00	0.00	3.01
2573	3419	6.047231	CCTCCGTTCCGAAATATAAGTCTTT	58.953	40.000	0.00	0.00	0.00	2.52
2574	3420	6.537660	CCTCCGTTCCGAAATATAAGTCTTTT	59.462	38.462	0.00	0.00	0.00	2.27
2575	3421	7.065443	CCTCCGTTCCGAAATATAAGTCTTTTT	59.935	37.037	0.00	0.00	0.00	1.94
2576	3422	9.090692	CTCCGTTCCGAAATATAAGTCTTTTTA	57.909	33.333	0.00	0.00	0.00	1.52
2577	3423	9.434420	TCCGTTCCGAAATATAAGTCTTTTTAA	57.566	29.630	0.00	0.00	0.00	1.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
163	166	3.573538	AGACAAGAGAGGATCGATGGATG	59.426	47.826	0.54	0.00	42.67	3.51
164	167	3.826157	GAGACAAGAGAGGATCGATGGAT	59.174	47.826	0.54	0.00	42.67	3.41
165	168	3.117701	AGAGACAAGAGAGGATCGATGGA	60.118	47.826	0.54	0.00	42.67	3.41
166	169	3.221771	AGAGACAAGAGAGGATCGATGG	58.778	50.000	0.54	0.00	42.67	3.51
171	174	4.718961	AGCTCTAGAGACAAGAGAGGATC	58.281	47.826	24.24	0.58	42.63	3.36
364	367	4.503734	CGAAGATTGTGCTTGCAAGAAAAA	59.496	37.500	30.39	21.70	0.00	1.94
387	390	4.330740	TCTTCTTAACGCGGTAATTTGC	57.669	40.909	18.32	0.00	0.00	3.68
587	622	1.421410	AAAGCTAATCGGCGTCAGCG	61.421	55.000	18.76	3.82	46.35	5.18
609	644	2.930040	CACTAGTTGCGATCGGTTCAAT	59.070	45.455	18.30	5.86	0.00	2.57
615	650	2.535984	GACAATCACTAGTTGCGATCGG	59.464	50.000	18.30	0.82	0.00	4.18
800	849	5.050490	GCTAATCTCAGCCGTTGATTTCTA	58.950	41.667	0.00	0.00	35.40	2.10
822	871	2.125350	CTCCTCTCGCTTGGTGGC	60.125	66.667	0.00	0.00	0.00	5.01
969	1020	5.482908	TCTTATTCCTCAGCTCAACTTGTC	58.517	41.667	0.00	0.00	0.00	3.18
1410	1524	4.128388	TCGATGAAGAGGCGCGCA	62.128	61.111	34.42	11.89	0.00	6.09
1651	1789	4.299155	ACTGTCATTGACGAACACTACAG	58.701	43.478	11.97	0.00	38.05	2.74
1692	2320	7.172019	TCAATCAATCGTAGCATCGTACTACTA	59.828	37.037	9.42	1.64	38.27	1.82
1693	2321	5.943706	ATCAATCGTAGCATCGTACTACT	57.056	39.130	9.42	0.00	38.27	2.57
1694	2322	6.140786	TCAATCAATCGTAGCATCGTACTAC	58.859	40.000	0.00	0.00	37.29	2.73
1898	2542	1.602605	TCACCGACTTCTGCCTCGA	60.603	57.895	0.00	0.00	31.24	4.04
1924	2568	4.702081	ACAGCCGTCGACGCTGTC	62.702	66.667	38.19	25.46	45.85	3.51
1971	2615	4.446413	GACCTGTGTACCCGCCCG	62.446	72.222	0.00	0.00	0.00	6.13
2007	2651	1.803922	CGTTCGTGCTCATGCCGTA	60.804	57.895	0.00	0.00	38.71	4.02
2060	2704	4.008933	GACCTGCGCCTGGTCACT	62.009	66.667	31.68	10.07	46.90	3.41
2124	2768	3.443045	GTGCCATTCGCCCTGGTG	61.443	66.667	0.00	0.00	36.10	4.17
2205	2851	2.663196	CGAGGTGTTCCTGTCCCC	59.337	66.667	0.00	0.00	45.24	4.81
2308	3154	1.672356	CACTTGGCCACCTTCCTCG	60.672	63.158	3.88	0.00	0.00	4.63
2325	3171	0.528017	GAGTCGTGTGAGATCTGCCA	59.472	55.000	0.00	0.00	0.00	4.92
2351	3197	2.688364	TAGCTCGCATGTATCTCACG	57.312	50.000	0.00	0.00	0.00	4.35
2361	3207	1.336332	CGCTACTTCCATAGCTCGCAT	60.336	52.381	0.00	0.00	44.60	4.73
2374	3220	2.590092	GGTGGGCCATCGCTACTT	59.410	61.111	10.70	0.00	34.44	2.24
2381	3227	0.773644	ATACATCTGGGTGGGCCATC	59.226	55.000	10.70	9.68	36.17	3.51
2443	3289	2.426024	TGATACTAGAACCTGTGTCCGC	59.574	50.000	0.00	0.00	0.00	5.54
2444	3290	4.920640	ATGATACTAGAACCTGTGTCCG	57.079	45.455	0.00	0.00	0.00	4.79
2501	3347	6.851222	TTGTGCTTAAGTCAGAAAAGAGAG	57.149	37.500	4.02	0.00	0.00	3.20
2502	3348	6.823689	AGTTTGTGCTTAAGTCAGAAAAGAGA	59.176	34.615	17.42	1.34	30.24	3.10
2503	3349	7.011857	AGAGTTTGTGCTTAAGTCAGAAAAGAG	59.988	37.037	17.42	0.00	30.24	2.85
2504	3350	6.823689	AGAGTTTGTGCTTAAGTCAGAAAAGA	59.176	34.615	17.42	1.86	30.24	2.52
2505	3351	7.011857	AGAGAGTTTGTGCTTAAGTCAGAAAAG	59.988	37.037	17.42	0.00	30.24	2.27
2536	3382	4.946445	GGAACGGAGGGAGTATTTAAGAG	58.054	47.826	0.00	0.00	0.00	2.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.