Multiple sequence alignment - TraesCS7D01G447400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G447400 chr7D 100.000 2288 0 0 1 2288 568007498 568005211 0.000000e+00 4226.0
1 TraesCS7D01G447400 chr7D 94.451 1712 71 10 1 1696 98406306 98404603 0.000000e+00 2614.0
2 TraesCS7D01G447400 chr7D 85.075 67 5 5 1899 1962 513254292 513254228 1.900000e-06 63.9
3 TraesCS7D01G447400 chr1D 95.909 1711 54 7 1 1696 369900545 369902254 0.000000e+00 2758.0
4 TraesCS7D01G447400 chr1D 92.697 1739 73 18 1 1707 209755855 209757571 0.000000e+00 2459.0
5 TraesCS7D01G447400 chr1D 95.175 912 30 3 798 1696 445568967 445569877 0.000000e+00 1428.0
6 TraesCS7D01G447400 chr6D 94.985 1715 67 8 1 1696 446604643 446602929 0.000000e+00 2673.0
7 TraesCS7D01G447400 chr7A 93.462 1713 96 8 1 1697 167800045 167798333 0.000000e+00 2529.0
8 TraesCS7D01G447400 chr3D 93.563 1709 82 17 1 1696 479622721 479624414 0.000000e+00 2521.0
9 TraesCS7D01G447400 chr4A 93.403 1713 88 12 1 1696 619180418 619182122 0.000000e+00 2514.0
10 TraesCS7D01G447400 chr2D 91.886 1713 118 10 4 1696 646800105 646798394 0.000000e+00 2374.0
11 TraesCS7D01G447400 chr2D 91.715 1714 120 11 4 1696 646961480 646959768 0.000000e+00 2359.0
12 TraesCS7D01G447400 chr2D 91.710 1713 119 10 4 1696 646883879 646882170 0.000000e+00 2355.0
13 TraesCS7D01G447400 chr2D 91.462 1710 111 11 4 1694 647091185 647089492 0.000000e+00 2316.0
14 TraesCS7D01G447400 chr2D 90.930 441 24 5 1271 1697 587371902 587371464 1.520000e-161 579.0
15 TraesCS7D01G447400 chr2D 89.583 48 4 1 1912 1958 1704332 1704379 2.450000e-05 60.2
16 TraesCS7D01G447400 chr5B 91.030 1728 87 20 1 1696 202892494 202890803 0.000000e+00 2270.0
17 TraesCS7D01G447400 chr5B 85.484 62 4 4 1895 1953 68173310 68173251 2.450000e-05 60.2
18 TraesCS7D01G447400 chr6B 90.501 1737 111 24 1 1704 671866728 671865013 0.000000e+00 2244.0
19 TraesCS7D01G447400 chr5A 88.978 1742 136 23 1 1695 312260244 312258512 0.000000e+00 2102.0
20 TraesCS7D01G447400 chrUn 90.849 754 41 16 949 1696 386164732 386165463 0.000000e+00 985.0
21 TraesCS7D01G447400 chr4D 94.168 463 13 5 1254 1703 398285778 398286239 0.000000e+00 693.0
22 TraesCS7D01G447400 chr4D 97.297 37 1 0 1899 1935 352806676 352806712 1.900000e-06 63.9
23 TraesCS7D01G447400 chr1B 93.617 47 1 2 1899 1943 250526897 250526851 4.080000e-08 69.4
24 TraesCS7D01G447400 chr1B 85.484 62 4 4 1895 1953 620659589 620659648 2.450000e-05 60.2
25 TraesCS7D01G447400 chr3B 95.349 43 1 1 1899 1940 705562004 705562046 1.470000e-07 67.6
26 TraesCS7D01G447400 chr2B 87.097 62 4 3 1878 1939 231092558 231092615 1.470000e-07 67.6
27 TraesCS7D01G447400 chr1A 80.460 87 13 3 1856 1940 559031362 559031446 1.900000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G447400 chr7D 568005211 568007498 2287 True 4226 4226 100.000 1 2288 1 chr7D.!!$R3 2287
1 TraesCS7D01G447400 chr7D 98404603 98406306 1703 True 2614 2614 94.451 1 1696 1 chr7D.!!$R1 1695
2 TraesCS7D01G447400 chr1D 369900545 369902254 1709 False 2758 2758 95.909 1 1696 1 chr1D.!!$F2 1695
3 TraesCS7D01G447400 chr1D 209755855 209757571 1716 False 2459 2459 92.697 1 1707 1 chr1D.!!$F1 1706
4 TraesCS7D01G447400 chr1D 445568967 445569877 910 False 1428 1428 95.175 798 1696 1 chr1D.!!$F3 898
5 TraesCS7D01G447400 chr6D 446602929 446604643 1714 True 2673 2673 94.985 1 1696 1 chr6D.!!$R1 1695
6 TraesCS7D01G447400 chr7A 167798333 167800045 1712 True 2529 2529 93.462 1 1697 1 chr7A.!!$R1 1696
7 TraesCS7D01G447400 chr3D 479622721 479624414 1693 False 2521 2521 93.563 1 1696 1 chr3D.!!$F1 1695
8 TraesCS7D01G447400 chr4A 619180418 619182122 1704 False 2514 2514 93.403 1 1696 1 chr4A.!!$F1 1695
9 TraesCS7D01G447400 chr2D 646798394 646800105 1711 True 2374 2374 91.886 4 1696 1 chr2D.!!$R2 1692
10 TraesCS7D01G447400 chr2D 646959768 646961480 1712 True 2359 2359 91.715 4 1696 1 chr2D.!!$R4 1692
11 TraesCS7D01G447400 chr2D 646882170 646883879 1709 True 2355 2355 91.710 4 1696 1 chr2D.!!$R3 1692
12 TraesCS7D01G447400 chr2D 647089492 647091185 1693 True 2316 2316 91.462 4 1694 1 chr2D.!!$R5 1690
13 TraesCS7D01G447400 chr5B 202890803 202892494 1691 True 2270 2270 91.030 1 1696 1 chr5B.!!$R2 1695
14 TraesCS7D01G447400 chr6B 671865013 671866728 1715 True 2244 2244 90.501 1 1704 1 chr6B.!!$R1 1703
15 TraesCS7D01G447400 chr5A 312258512 312260244 1732 True 2102 2102 88.978 1 1695 1 chr5A.!!$R1 1694
16 TraesCS7D01G447400 chrUn 386164732 386165463 731 False 985 985 90.849 949 1696 1 chrUn.!!$F1 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 862 0.685458 GCAGCCCCTTCATCCAATGT 60.685 55.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 1767 0.10741 AAATGAATCGCTACCGGCCA 60.107 50.0 0.0 0.0 37.74 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
388 389 3.990469 CAGCGTCTTCAGCTCTTCTTTAA 59.010 43.478 0.00 0.00 44.06 1.52
517 518 1.687493 CCGAGGAAGAAGGCCCTCT 60.687 63.158 0.00 0.00 45.16 3.69
551 553 3.680786 GAAGGGGTTGGCGTTGGC 61.681 66.667 0.00 0.00 38.90 4.52
764 809 0.897621 TGTGTGCAGATCGAGGACAT 59.102 50.000 15.95 0.00 39.51 3.06
817 862 0.685458 GCAGCCCCTTCATCCAATGT 60.685 55.000 0.00 0.00 0.00 2.71
825 870 1.927174 CTTCATCCAATGTCCGACGAC 59.073 52.381 0.00 0.00 39.66 4.34
899 947 3.160047 CGAGGGCATGGAGGAGCT 61.160 66.667 0.00 0.00 0.00 4.09
1034 1084 3.777925 CAAGCACTTCGTCGCGGG 61.778 66.667 6.13 0.00 0.00 6.13
1068 1118 1.348064 ATCTCAGGAACAACACCGGA 58.652 50.000 9.46 0.00 0.00 5.14
1141 1191 2.281900 GTTGGGCCACCTACGCAA 60.282 61.111 5.23 0.00 37.60 4.85
1493 1558 2.691526 CACATCAGGCCTTGCATACAAT 59.308 45.455 0.00 0.00 34.61 2.71
1510 1575 2.964464 ACAATCAAACACCATGCCTTGA 59.036 40.909 0.00 0.00 30.39 3.02
1550 1615 0.249031 GCAACCAAACACCAGACAGC 60.249 55.000 0.00 0.00 0.00 4.40
1554 1619 0.813610 CCAAACACCAGACAGCGTGA 60.814 55.000 0.00 0.00 34.05 4.35
1595 1661 2.023223 GCATGCAGGCAACCAAACG 61.023 57.895 20.11 0.00 37.17 3.60
1697 1763 2.335011 GCAACCAAACACGCCCTC 59.665 61.111 0.00 0.00 0.00 4.30
1698 1764 2.193536 GCAACCAAACACGCCCTCT 61.194 57.895 0.00 0.00 0.00 3.69
1700 1766 1.528309 AACCAAACACGCCCTCTGG 60.528 57.895 0.00 0.00 0.00 3.86
1701 1767 2.113139 CCAAACACGCCCTCTGGT 59.887 61.111 0.00 0.00 0.00 4.00
1703 1769 2.113139 AAACACGCCCTCTGGTGG 59.887 61.111 0.00 0.00 46.96 4.61
1710 1776 3.470888 CCCTCTGGTGGCCGGTAG 61.471 72.222 1.90 0.00 0.00 3.18
1711 1777 4.162690 CCTCTGGTGGCCGGTAGC 62.163 72.222 1.90 2.90 42.60 3.58
1712 1778 4.514577 CTCTGGTGGCCGGTAGCG 62.515 72.222 7.49 7.49 45.17 4.26
1714 1780 3.849951 CTGGTGGCCGGTAGCGAT 61.850 66.667 17.33 0.00 45.17 4.58
1715 1781 3.385749 CTGGTGGCCGGTAGCGATT 62.386 63.158 17.33 0.00 45.17 3.34
1716 1782 2.588034 GGTGGCCGGTAGCGATTC 60.588 66.667 17.33 5.29 45.17 2.52
1717 1783 2.185867 GTGGCCGGTAGCGATTCA 59.814 61.111 17.33 7.94 45.17 2.57
1718 1784 1.227556 GTGGCCGGTAGCGATTCAT 60.228 57.895 17.33 0.00 45.17 2.57
1719 1785 0.814010 GTGGCCGGTAGCGATTCATT 60.814 55.000 17.33 0.00 45.17 2.57
1720 1786 0.107410 TGGCCGGTAGCGATTCATTT 60.107 50.000 17.33 0.00 45.17 2.32
1721 1787 1.021968 GGCCGGTAGCGATTCATTTT 58.978 50.000 17.33 0.00 45.17 1.82
1722 1788 1.404035 GGCCGGTAGCGATTCATTTTT 59.596 47.619 17.33 0.00 45.17 1.94
1771 1837 9.705290 ATGAACAAGTTTTAAGAACACACTTTT 57.295 25.926 0.00 0.00 0.00 2.27
1772 1838 9.535878 TGAACAAGTTTTAAGAACACACTTTTT 57.464 25.926 0.00 0.00 0.00 1.94
1774 1840 8.222984 ACAAGTTTTAAGAACACACTTTTTCG 57.777 30.769 0.00 0.00 0.00 3.46
1775 1841 8.077386 ACAAGTTTTAAGAACACACTTTTTCGA 58.923 29.630 0.00 0.00 0.00 3.71
1776 1842 8.907685 CAAGTTTTAAGAACACACTTTTTCGAA 58.092 29.630 0.00 0.00 0.00 3.71
1777 1843 9.634163 AAGTTTTAAGAACACACTTTTTCGAAT 57.366 25.926 0.00 0.00 0.00 3.34
1778 1844 9.634163 AGTTTTAAGAACACACTTTTTCGAATT 57.366 25.926 0.00 0.00 0.00 2.17
1782 1848 9.627395 TTAAGAACACACTTTTTCGAATTTTCA 57.373 25.926 0.00 0.00 0.00 2.69
1783 1849 8.527567 AAGAACACACTTTTTCGAATTTTCAA 57.472 26.923 0.00 0.00 0.00 2.69
1784 1850 8.527567 AGAACACACTTTTTCGAATTTTCAAA 57.472 26.923 0.00 0.00 0.00 2.69
1785 1851 8.983724 AGAACACACTTTTTCGAATTTTCAAAA 58.016 25.926 0.00 0.00 0.00 2.44
1786 1852 9.753669 GAACACACTTTTTCGAATTTTCAAAAT 57.246 25.926 0.00 0.00 0.00 1.82
1839 1905 8.608844 TTTGTGAACAAACCTTAAAAATGTGT 57.391 26.923 4.52 0.00 40.55 3.72
1840 1906 9.706691 TTTGTGAACAAACCTTAAAAATGTGTA 57.293 25.926 4.52 0.00 40.55 2.90
1841 1907 9.877178 TTGTGAACAAACCTTAAAAATGTGTAT 57.123 25.926 0.00 0.00 32.11 2.29
1842 1908 9.877178 TGTGAACAAACCTTAAAAATGTGTATT 57.123 25.926 0.00 0.00 0.00 1.89
1960 2026 9.594478 TGAAAAGTAGAAAGATTTTGGAAAACC 57.406 29.630 0.00 0.00 0.00 3.27
1961 2027 9.594478 GAAAAGTAGAAAGATTTTGGAAAACCA 57.406 29.630 0.00 0.00 0.00 3.67
1962 2028 8.942338 AAAGTAGAAAGATTTTGGAAAACCAC 57.058 30.769 0.00 0.00 0.00 4.16
1963 2029 7.654022 AGTAGAAAGATTTTGGAAAACCACA 57.346 32.000 0.00 0.00 0.00 4.17
1964 2030 8.250143 AGTAGAAAGATTTTGGAAAACCACAT 57.750 30.769 0.00 0.00 0.00 3.21
1965 2031 8.704668 AGTAGAAAGATTTTGGAAAACCACATT 58.295 29.630 0.00 0.00 0.00 2.71
1966 2032 7.790823 AGAAAGATTTTGGAAAACCACATTG 57.209 32.000 0.00 0.00 0.00 2.82
1967 2033 7.337938 AGAAAGATTTTGGAAAACCACATTGT 58.662 30.769 0.00 0.00 0.00 2.71
1968 2034 7.828717 AGAAAGATTTTGGAAAACCACATTGTT 59.171 29.630 0.00 0.00 0.00 2.83
1969 2035 7.936496 AAGATTTTGGAAAACCACATTGTTT 57.064 28.000 0.00 0.00 40.05 2.83
1970 2036 7.319142 AGATTTTGGAAAACCACATTGTTTG 57.681 32.000 0.00 0.00 38.41 2.93
1971 2037 7.108847 AGATTTTGGAAAACCACATTGTTTGA 58.891 30.769 0.00 0.00 38.41 2.69
1972 2038 7.609532 AGATTTTGGAAAACCACATTGTTTGAA 59.390 29.630 0.00 0.00 38.41 2.69
1973 2039 7.510549 TTTTGGAAAACCACATTGTTTGAAA 57.489 28.000 0.00 0.00 38.41 2.69
1974 2040 7.693969 TTTGGAAAACCACATTGTTTGAAAT 57.306 28.000 0.00 0.00 38.41 2.17
1975 2041 7.693969 TTGGAAAACCACATTGTTTGAAATT 57.306 28.000 0.00 0.00 38.41 1.82
1976 2042 7.313951 TGGAAAACCACATTGTTTGAAATTC 57.686 32.000 0.00 0.00 38.41 2.17
1977 2043 6.317391 TGGAAAACCACATTGTTTGAAATTCC 59.683 34.615 0.00 0.00 38.41 3.01
1978 2044 6.238621 GGAAAACCACATTGTTTGAAATTCCC 60.239 38.462 0.00 0.00 38.41 3.97
1979 2045 3.988819 ACCACATTGTTTGAAATTCCCG 58.011 40.909 0.00 0.00 0.00 5.14
1980 2046 3.639094 ACCACATTGTTTGAAATTCCCGA 59.361 39.130 0.00 0.00 0.00 5.14
1981 2047 4.100189 ACCACATTGTTTGAAATTCCCGAA 59.900 37.500 0.00 0.00 0.00 4.30
1982 2048 5.221621 ACCACATTGTTTGAAATTCCCGAAT 60.222 36.000 0.00 0.00 0.00 3.34
1983 2049 6.015010 ACCACATTGTTTGAAATTCCCGAATA 60.015 34.615 0.00 0.00 0.00 1.75
1984 2050 7.041107 CCACATTGTTTGAAATTCCCGAATAT 58.959 34.615 0.00 0.00 0.00 1.28
1985 2051 7.548780 CCACATTGTTTGAAATTCCCGAATATT 59.451 33.333 0.00 0.00 0.00 1.28
1986 2052 8.934825 CACATTGTTTGAAATTCCCGAATATTT 58.065 29.630 0.00 0.00 0.00 1.40
1987 2053 9.500785 ACATTGTTTGAAATTCCCGAATATTTT 57.499 25.926 0.00 0.00 0.00 1.82
1990 2056 8.316640 TGTTTGAAATTCCCGAATATTTTTGG 57.683 30.769 0.00 0.00 36.28 3.28
1999 2065 5.637006 CCGAATATTTTTGGGAGACACAA 57.363 39.130 0.00 0.00 33.25 3.33
2000 2066 6.207691 CCGAATATTTTTGGGAGACACAAT 57.792 37.500 0.00 0.00 33.25 2.71
2001 2067 6.630071 CCGAATATTTTTGGGAGACACAATT 58.370 36.000 0.00 0.00 33.25 2.32
2002 2068 7.096551 CCGAATATTTTTGGGAGACACAATTT 58.903 34.615 0.00 0.00 33.25 1.82
2003 2069 7.602265 CCGAATATTTTTGGGAGACACAATTTT 59.398 33.333 0.00 0.00 33.25 1.82
2004 2070 8.987890 CGAATATTTTTGGGAGACACAATTTTT 58.012 29.630 0.00 0.00 0.00 1.94
2054 2120 9.598517 AACTAGAACAATTTTTGAAAAGCATGA 57.401 25.926 0.00 0.00 0.00 3.07
2055 2121 9.598517 ACTAGAACAATTTTTGAAAAGCATGAA 57.401 25.926 0.00 0.00 0.00 2.57
2281 2347 9.752228 AAATGCCAAAAATCCAATAAAATACCT 57.248 25.926 0.00 0.00 0.00 3.08
2282 2348 8.735692 ATGCCAAAAATCCAATAAAATACCTG 57.264 30.769 0.00 0.00 0.00 4.00
2283 2349 7.108847 TGCCAAAAATCCAATAAAATACCTGG 58.891 34.615 0.00 0.00 0.00 4.45
2284 2350 7.109501 GCCAAAAATCCAATAAAATACCTGGT 58.890 34.615 4.05 4.05 0.00 4.00
2285 2351 7.609918 GCCAAAAATCCAATAAAATACCTGGTT 59.390 33.333 3.84 0.00 0.00 3.67
2286 2352 9.513906 CCAAAAATCCAATAAAATACCTGGTTT 57.486 29.630 3.84 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.632409 AGAAGAAGATGAAGGCCAGCA 59.368 47.619 5.01 1.90 32.59 4.41
388 389 1.452651 CCGTGCTCATGAAGGCCAT 60.453 57.895 5.01 0.00 35.44 4.40
517 518 1.850345 CTTCCCTTGGGGTATTGGCTA 59.150 52.381 5.78 0.00 44.74 3.93
817 862 2.254350 CAGCTCAACGTCGTCGGA 59.746 61.111 7.05 0.00 41.85 4.55
899 947 2.046314 GGCGCTTGTTGCTAGGGA 60.046 61.111 7.64 0.00 40.11 4.20
1034 1084 0.806492 GAGATTGAACTCCGTCGGCC 60.806 60.000 6.34 0.00 0.00 6.13
1050 1100 1.001974 CATCCGGTGTTGTTCCTGAGA 59.998 52.381 0.00 0.00 0.00 3.27
1068 1118 1.599047 CGTCACCTTCCAGGAGCAT 59.401 57.895 0.00 0.00 37.67 3.79
1141 1191 3.491619 CCGATCTTGATCTGATGAACGGT 60.492 47.826 13.51 0.00 39.12 4.83
1402 1454 6.102897 AGCACAACAGAGTATAAACAGAGT 57.897 37.500 0.00 0.00 0.00 3.24
1493 1558 2.363306 ACTCAAGGCATGGTGTTTGA 57.637 45.000 0.00 0.00 0.00 2.69
1510 1575 3.149196 CCTGCATGTTAGTCCACAAACT 58.851 45.455 0.00 0.00 0.00 2.66
1550 1615 1.721664 CCTGCATGGGCTGAATCACG 61.722 60.000 0.00 0.00 41.06 4.35
1554 1619 1.565759 TCTTACCTGCATGGGCTGAAT 59.434 47.619 7.06 0.00 41.06 2.57
1697 1763 3.385749 AATCGCTACCGGCCACCAG 62.386 63.158 0.00 0.00 37.74 4.00
1698 1764 3.379865 GAATCGCTACCGGCCACCA 62.380 63.158 0.00 0.00 37.74 4.17
1700 1766 0.814010 AATGAATCGCTACCGGCCAC 60.814 55.000 0.00 0.00 37.74 5.01
1701 1767 0.107410 AAATGAATCGCTACCGGCCA 60.107 50.000 0.00 0.00 37.74 5.36
1703 1769 2.844122 AAAAATGAATCGCTACCGGC 57.156 45.000 0.00 0.00 34.56 6.13
1745 1811 9.705290 AAAAGTGTGTTCTTAAAACTTGTTCAT 57.295 25.926 0.00 0.00 31.69 2.57
1746 1812 9.535878 AAAAAGTGTGTTCTTAAAACTTGTTCA 57.464 25.926 0.00 0.00 31.69 3.18
1748 1814 8.696175 CGAAAAAGTGTGTTCTTAAAACTTGTT 58.304 29.630 0.00 0.00 32.33 2.83
1749 1815 8.077386 TCGAAAAAGTGTGTTCTTAAAACTTGT 58.923 29.630 0.00 0.00 31.69 3.16
1750 1816 8.442605 TCGAAAAAGTGTGTTCTTAAAACTTG 57.557 30.769 0.00 0.00 31.69 3.16
1751 1817 9.634163 ATTCGAAAAAGTGTGTTCTTAAAACTT 57.366 25.926 0.00 0.00 32.60 2.66
1752 1818 9.634163 AATTCGAAAAAGTGTGTTCTTAAAACT 57.366 25.926 0.00 0.00 0.00 2.66
1756 1822 9.627395 TGAAAATTCGAAAAAGTGTGTTCTTAA 57.373 25.926 0.00 0.00 0.00 1.85
1757 1823 9.627395 TTGAAAATTCGAAAAAGTGTGTTCTTA 57.373 25.926 0.00 0.00 0.00 2.10
1758 1824 8.527567 TTGAAAATTCGAAAAAGTGTGTTCTT 57.472 26.923 0.00 0.00 0.00 2.52
1759 1825 8.527567 TTTGAAAATTCGAAAAAGTGTGTTCT 57.472 26.923 0.00 0.00 0.00 3.01
1760 1826 9.753669 ATTTTGAAAATTCGAAAAAGTGTGTTC 57.246 25.926 0.00 0.00 42.19 3.18
1805 1871 6.566197 AGGTTTGTTCACAAATTGCAAAAA 57.434 29.167 1.71 0.00 46.12 1.94
1806 1872 6.566197 AAGGTTTGTTCACAAATTGCAAAA 57.434 29.167 1.71 0.00 46.12 2.44
1807 1873 7.672983 TTAAGGTTTGTTCACAAATTGCAAA 57.327 28.000 1.71 0.00 46.12 3.68
1808 1874 7.672983 TTTAAGGTTTGTTCACAAATTGCAA 57.327 28.000 0.00 0.00 46.12 4.08
1809 1875 7.672983 TTTTAAGGTTTGTTCACAAATTGCA 57.327 28.000 8.32 0.00 46.12 4.08
1810 1876 9.008289 CATTTTTAAGGTTTGTTCACAAATTGC 57.992 29.630 8.32 0.00 46.12 3.56
1813 1879 9.225436 ACACATTTTTAAGGTTTGTTCACAAAT 57.775 25.926 8.32 0.00 46.12 2.32
1814 1880 8.608844 ACACATTTTTAAGGTTTGTTCACAAA 57.391 26.923 0.79 0.79 42.90 2.83
1815 1881 9.877178 ATACACATTTTTAAGGTTTGTTCACAA 57.123 25.926 0.00 0.00 0.00 3.33
1816 1882 9.877178 AATACACATTTTTAAGGTTTGTTCACA 57.123 25.926 0.00 0.00 0.00 3.58
1934 2000 9.594478 GGTTTTCCAAAATCTTTCTACTTTTCA 57.406 29.630 0.00 0.00 40.31 2.69
1953 2019 6.238621 GGGAATTTCAAACAATGTGGTTTTCC 60.239 38.462 0.00 0.00 38.86 3.13
1954 2020 6.510960 CGGGAATTTCAAACAATGTGGTTTTC 60.511 38.462 0.00 0.00 38.86 2.29
1955 2021 5.295540 CGGGAATTTCAAACAATGTGGTTTT 59.704 36.000 0.00 0.00 38.86 2.43
1956 2022 4.813697 CGGGAATTTCAAACAATGTGGTTT 59.186 37.500 0.00 0.00 41.44 3.27
1957 2023 4.100189 TCGGGAATTTCAAACAATGTGGTT 59.900 37.500 0.00 0.00 0.00 3.67
1958 2024 3.639094 TCGGGAATTTCAAACAATGTGGT 59.361 39.130 0.00 0.00 0.00 4.16
1959 2025 4.250116 TCGGGAATTTCAAACAATGTGG 57.750 40.909 0.00 0.00 0.00 4.17
1960 2026 8.477984 AATATTCGGGAATTTCAAACAATGTG 57.522 30.769 0.00 0.00 32.50 3.21
1961 2027 9.500785 AAAATATTCGGGAATTTCAAACAATGT 57.499 25.926 0.00 0.00 32.50 2.71
1964 2030 8.778358 CCAAAAATATTCGGGAATTTCAAACAA 58.222 29.630 0.00 0.00 32.50 2.83
1965 2031 7.389053 CCCAAAAATATTCGGGAATTTCAAACA 59.611 33.333 10.68 0.00 41.62 2.83
1966 2032 7.604545 TCCCAAAAATATTCGGGAATTTCAAAC 59.395 33.333 14.79 0.00 44.87 2.93
1967 2033 7.680730 TCCCAAAAATATTCGGGAATTTCAAA 58.319 30.769 14.79 0.00 44.87 2.69
1968 2034 7.246171 TCCCAAAAATATTCGGGAATTTCAA 57.754 32.000 14.79 0.00 44.87 2.69
1969 2035 6.859112 TCCCAAAAATATTCGGGAATTTCA 57.141 33.333 14.79 0.00 44.87 2.69
1975 2041 4.263550 TGTGTCTCCCAAAAATATTCGGGA 60.264 41.667 15.80 15.80 45.66 5.14
1976 2042 4.013728 TGTGTCTCCCAAAAATATTCGGG 58.986 43.478 10.12 10.12 40.32 5.14
1977 2043 5.637006 TTGTGTCTCCCAAAAATATTCGG 57.363 39.130 0.00 0.00 0.00 4.30
1978 2044 8.532977 AAAATTGTGTCTCCCAAAAATATTCG 57.467 30.769 0.00 0.00 0.00 3.34
2028 2094 9.598517 TCATGCTTTTCAAAAATTGTTCTAGTT 57.401 25.926 0.00 0.00 0.00 2.24
2029 2095 9.598517 TTCATGCTTTTCAAAAATTGTTCTAGT 57.401 25.926 0.00 0.00 0.00 2.57
2255 2321 9.752228 AGGTATTTTATTGGATTTTTGGCATTT 57.248 25.926 0.00 0.00 0.00 2.32
2256 2322 9.176460 CAGGTATTTTATTGGATTTTTGGCATT 57.824 29.630 0.00 0.00 0.00 3.56
2257 2323 7.774625 CCAGGTATTTTATTGGATTTTTGGCAT 59.225 33.333 0.00 0.00 32.34 4.40
2258 2324 7.108847 CCAGGTATTTTATTGGATTTTTGGCA 58.891 34.615 0.00 0.00 32.34 4.92
2259 2325 7.109501 ACCAGGTATTTTATTGGATTTTTGGC 58.890 34.615 0.00 0.00 34.76 4.52
2260 2326 9.513906 AAACCAGGTATTTTATTGGATTTTTGG 57.486 29.630 0.00 0.00 34.76 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.