Multiple sequence alignment - TraesCS7D01G447100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G447100 chr7D 100.000 5216 0 0 1 5216 567660834 567655619 0.000000e+00 9633.0
1 TraesCS7D01G447100 chr7D 85.515 1933 223 34 1690 3577 44525198 44523278 0.000000e+00 1965.0
2 TraesCS7D01G447100 chr7D 86.462 650 42 28 1004 1630 44525925 44525299 0.000000e+00 671.0
3 TraesCS7D01G447100 chr7D 86.059 373 46 2 3758 4130 44522949 44522583 3.790000e-106 396.0
4 TraesCS7D01G447100 chr7D 98.795 166 2 0 4444 4609 125844851 125844686 3.950000e-76 296.0
5 TraesCS7D01G447100 chr7D 97.006 167 5 0 4441 4607 411927642 411927808 1.110000e-71 281.0
6 TraesCS7D01G447100 chr7D 94.444 180 8 2 4441 4618 406904236 406904415 5.150000e-70 276.0
7 TraesCS7D01G447100 chr7D 96.429 168 3 3 4444 4610 235502568 235502403 1.850000e-69 274.0
8 TraesCS7D01G447100 chr7D 88.571 70 4 4 582 649 25043130 25043197 1.200000e-11 82.4
9 TraesCS7D01G447100 chr7D 86.111 72 8 1 581 650 459970909 459970980 5.600000e-10 76.8
10 TraesCS7D01G447100 chr7B 93.489 2734 119 18 1728 4430 621475048 621472343 0.000000e+00 4008.0
11 TraesCS7D01G447100 chr7B 93.299 985 46 9 766 1739 621476052 621475077 0.000000e+00 1435.0
12 TraesCS7D01G447100 chr7B 87.755 98 6 6 648 741 621476142 621476047 5.520000e-20 110.0
13 TraesCS7D01G447100 chr7A 93.750 2688 114 22 1728 4383 654206393 654203728 0.000000e+00 3984.0
14 TraesCS7D01G447100 chr7A 85.879 1912 220 28 1690 3559 46969107 46967204 0.000000e+00 1989.0
15 TraesCS7D01G447100 chr7A 91.830 1273 52 21 500 1739 654207676 654206423 0.000000e+00 1727.0
16 TraesCS7D01G447100 chr7A 92.218 514 28 10 1 510 654208232 654207727 0.000000e+00 717.0
17 TraesCS7D01G447100 chr7A 85.294 646 55 30 1004 1630 46969954 46969330 9.530000e-177 630.0
18 TraesCS7D01G447100 chr7A 88.196 449 34 4 4607 5040 654203722 654203278 7.740000e-143 518.0
19 TraesCS7D01G447100 chr7A 84.718 373 48 3 3758 4130 46966867 46966504 1.070000e-96 364.0
20 TraesCS7D01G447100 chr7A 94.309 123 5 1 5090 5210 654203278 654203156 2.480000e-43 187.0
21 TraesCS7D01G447100 chr4A 85.699 1930 223 30 1690 3576 655626579 655624660 0.000000e+00 1986.0
22 TraesCS7D01G447100 chr4A 84.370 659 57 32 1008 1630 655627322 655626674 5.780000e-169 604.0
23 TraesCS7D01G447100 chr4A 84.840 376 50 3 3758 4133 655624338 655623970 6.380000e-99 372.0
24 TraesCS7D01G447100 chr4A 88.406 69 6 2 582 649 662287409 662287342 1.200000e-11 82.4
25 TraesCS7D01G447100 chr6D 97.093 172 3 2 4436 4606 473238212 473238382 6.610000e-74 289.0
26 TraesCS7D01G447100 chr1D 98.160 163 3 0 4444 4606 339098253 339098091 8.550000e-73 285.0
27 TraesCS7D01G447100 chr1D 96.429 168 5 1 4443 4610 9665970 9666136 5.150000e-70 276.0
28 TraesCS7D01G447100 chr1D 96.407 167 6 0 4443 4609 311986775 311986609 5.150000e-70 276.0
29 TraesCS7D01G447100 chr5D 91.146 192 16 1 4419 4609 498721881 498722072 5.180000e-65 259.0
30 TraesCS7D01G447100 chr6B 89.041 73 4 3 582 650 652640757 652640829 2.590000e-13 87.9
31 TraesCS7D01G447100 chr6B 86.842 76 6 3 578 649 214871928 214872003 1.200000e-11 82.4
32 TraesCS7D01G447100 chr6B 88.235 68 6 1 582 649 195461926 195461861 4.330000e-11 80.5
33 TraesCS7D01G447100 chr4D 89.706 68 5 1 583 650 372358009 372358074 9.310000e-13 86.1
34 TraesCS7D01G447100 chr4D 88.732 71 5 3 583 650 123779678 123779608 3.350000e-12 84.2
35 TraesCS7D01G447100 chr5B 85.507 69 10 0 582 650 572349983 572349915 7.250000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G447100 chr7D 567655619 567660834 5215 True 9633.000000 9633 100.000000 1 5216 1 chr7D.!!$R3 5215
1 TraesCS7D01G447100 chr7D 44522583 44525925 3342 True 1010.666667 1965 86.012000 1004 4130 3 chr7D.!!$R4 3126
2 TraesCS7D01G447100 chr7B 621472343 621476142 3799 True 1851.000000 4008 91.514333 648 4430 3 chr7B.!!$R1 3782
3 TraesCS7D01G447100 chr7A 654203156 654208232 5076 True 1426.600000 3984 92.060600 1 5210 5 chr7A.!!$R2 5209
4 TraesCS7D01G447100 chr7A 46966504 46969954 3450 True 994.333333 1989 85.297000 1004 4130 3 chr7A.!!$R1 3126
5 TraesCS7D01G447100 chr4A 655623970 655627322 3352 True 987.333333 1986 84.969667 1008 4133 3 chr4A.!!$R2 3125

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 667 1.073098 ACTCCCTCCGTCCCAAATTT 58.927 50.000 0.0 0.0 0.00 1.82 F
987 1088 1.147153 CCCCTTCCTCCGATTCAGC 59.853 63.158 0.0 0.0 0.00 4.26 F
2060 2449 0.249447 CTCAGTTGGACACGACAGCA 60.249 55.000 0.0 0.0 33.15 4.41 F
3308 3714 0.250513 GGATCGTTGACCAGGAAGCT 59.749 55.000 0.0 0.0 0.00 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 2183 1.003118 TGGCCGATTGCTTGAAGTACT 59.997 47.619 0.0 0.0 40.92 2.73 R
2733 3132 0.394488 GGGCTAAGAAACCCTGAGGC 60.394 60.000 0.0 0.0 45.80 4.70 R
3818 4421 0.314302 AAAGTCCCTCGTCACACTCG 59.686 55.000 0.0 0.0 0.00 4.18 R
5062 5686 0.033920 CCAACCCTTGAAGCTTTGGC 59.966 55.000 0.0 0.0 39.06 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 186 4.647611 ACATTTTCCAGATACACCGTTGA 58.352 39.130 0.00 0.00 0.00 3.18
210 212 8.094798 ACATTTTTCGAGTACACATACATGTT 57.905 30.769 2.30 0.00 39.39 2.71
214 216 9.866936 TTTTTCGAGTACACATACATGTTAAAC 57.133 29.630 2.30 0.00 39.39 2.01
215 217 6.858104 TCGAGTACACATACATGTTAAACG 57.142 37.500 2.30 0.01 39.39 3.60
427 430 8.394877 TCAAACATTGATCGAATGGTACAATAC 58.605 33.333 16.89 0.00 41.45 1.89
503 507 9.868277 AAATAGTTTTGAAGATGTCACAAACAA 57.132 25.926 0.00 0.00 42.37 2.83
600 665 2.191981 ATACTCCCTCCGTCCCAAAT 57.808 50.000 0.00 0.00 0.00 2.32
602 667 1.073098 ACTCCCTCCGTCCCAAATTT 58.927 50.000 0.00 0.00 0.00 1.82
603 668 1.427753 ACTCCCTCCGTCCCAAATTTT 59.572 47.619 0.00 0.00 0.00 1.82
604 669 2.158370 ACTCCCTCCGTCCCAAATTTTT 60.158 45.455 0.00 0.00 0.00 1.94
634 713 9.438291 CACTACAAAGTTGAGACACTTATTTTG 57.562 33.333 0.00 0.00 35.87 2.44
637 716 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
638 717 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
639 718 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
640 719 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
641 720 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
642 721 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
643 722 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
644 723 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
645 724 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
655 734 1.409427 GGACGGAGGGAGTATGTCTTG 59.591 57.143 0.00 0.00 0.00 3.02
961 1051 4.096003 CTGCGTCGGTCCCCCAAT 62.096 66.667 0.00 0.00 0.00 3.16
966 1056 1.383525 GTCGGTCCCCCAATCCCTA 60.384 63.158 0.00 0.00 0.00 3.53
985 1086 4.066614 CCCCCTTCCTCCGATTCA 57.933 61.111 0.00 0.00 0.00 2.57
986 1087 1.832912 CCCCCTTCCTCCGATTCAG 59.167 63.158 0.00 0.00 0.00 3.02
987 1088 1.147153 CCCCTTCCTCCGATTCAGC 59.853 63.158 0.00 0.00 0.00 4.26
1398 1537 1.777030 CGTCCTCGACCTCATCTCCG 61.777 65.000 0.00 0.00 39.71 4.63
1419 1558 3.000819 TCCGCCCACATCTCCGTT 61.001 61.111 0.00 0.00 0.00 4.44
1643 1812 1.482593 CCCCTGTTAGTCTGCAGTAGG 59.517 57.143 14.67 12.06 0.00 3.18
1735 2080 7.823745 AAAAGATGTTTGGAGTAGTTCATGT 57.176 32.000 0.00 0.00 0.00 3.21
1797 2183 1.407851 GCAATCTCAGCATCTGGGACA 60.408 52.381 0.00 0.00 44.30 4.02
1877 2263 1.278985 ACGGCTCATTGATCAGGTTCA 59.721 47.619 0.00 0.00 0.00 3.18
1882 2269 4.275443 GGCTCATTGATCAGGTTCATCTTC 59.725 45.833 0.00 0.00 0.00 2.87
2055 2444 1.754803 ACACTTCTCAGTTGGACACGA 59.245 47.619 0.00 0.00 0.00 4.35
2060 2449 0.249447 CTCAGTTGGACACGACAGCA 60.249 55.000 0.00 0.00 33.15 4.41
2064 2453 0.944386 GTTGGACACGACAGCAATGT 59.056 50.000 0.00 0.00 0.00 2.71
2082 2471 2.016318 TGTCCCGATTGTCATCATTGC 58.984 47.619 0.00 0.00 0.00 3.56
2116 2505 1.606903 GATCAGGACTCGTCGGGTAT 58.393 55.000 0.00 0.00 0.00 2.73
2129 2518 4.082081 TCGTCGGGTATTTTGTCTGTACAT 60.082 41.667 0.00 0.00 34.97 2.29
2160 2549 2.170985 CGTGCCGTTTCTTGAGCG 59.829 61.111 0.00 0.00 0.00 5.03
2170 2559 3.001330 CGTTTCTTGAGCGTTCAGTTTCT 59.999 43.478 1.23 0.00 34.15 2.52
2211 2600 1.087501 GGAAGGCTACGCTTCCAAAG 58.912 55.000 12.94 0.00 46.12 2.77
2307 2699 3.059166 GTCAAACAAGCGCATTCCATTT 58.941 40.909 11.47 0.00 0.00 2.32
2367 2763 9.643693 AGGTTGTCTAAATGCTTTTGATTATTG 57.356 29.630 7.78 0.00 0.00 1.90
2368 2764 8.382875 GGTTGTCTAAATGCTTTTGATTATTGC 58.617 33.333 7.78 0.00 0.00 3.56
2436 2832 4.787598 CTGTGACAAATTTTTCCCTCTCG 58.212 43.478 2.00 0.00 0.00 4.04
2480 2879 6.383147 ACCATACTACCTTCTGCTTAGCTAAA 59.617 38.462 7.74 0.00 0.00 1.85
2490 2889 5.300752 TCTGCTTAGCTAAATGTATGCCTC 58.699 41.667 7.74 0.00 0.00 4.70
2541 2940 3.030291 ACATTTGTCCAAACTCAAGGCA 58.970 40.909 0.00 0.00 32.51 4.75
2620 3019 1.001378 GTTGTGCCTTTCACTTGCGAT 60.001 47.619 0.00 0.00 45.81 4.58
2650 3049 4.780021 ACAGGATAGTGACTCAGAAATGGT 59.220 41.667 0.00 0.00 0.00 3.55
2729 3128 3.574396 GGAAGCAGGAGCCTTTAAAAAGT 59.426 43.478 2.03 0.00 43.56 2.66
2731 3130 2.893489 AGCAGGAGCCTTTAAAAAGTGG 59.107 45.455 2.03 0.00 43.56 4.00
2749 3148 0.744771 GGCGCCTCAGGGTTTCTTAG 60.745 60.000 22.15 0.00 34.45 2.18
2813 3212 8.777413 CATGACAACATTCTTAAGAAAGTCAGA 58.223 33.333 29.06 18.50 38.13 3.27
2816 3215 8.371770 ACAACATTCTTAAGAAAGTCAGAGAC 57.628 34.615 22.46 0.00 35.25 3.36
2966 3365 2.362717 GGAGCTGGAGAGTGTGGTATAC 59.637 54.545 0.00 0.00 0.00 1.47
2972 3371 5.202004 CTGGAGAGTGTGGTATACCTACTT 58.798 45.833 24.08 17.02 35.40 2.24
2973 3372 5.586877 TGGAGAGTGTGGTATACCTACTTT 58.413 41.667 24.08 20.60 35.40 2.66
3004 3404 6.114767 TCTGTTCATCAATGCAGCAGTATAA 58.885 36.000 0.00 0.00 0.00 0.98
3308 3714 0.250513 GGATCGTTGACCAGGAAGCT 59.749 55.000 0.00 0.00 0.00 3.74
3571 4008 5.781210 TTGGCTACAATGTTCATTGTTCA 57.219 34.783 28.02 21.50 41.55 3.18
3588 4025 0.615331 TCAAGTCCCTGCACTCCATC 59.385 55.000 0.00 0.00 0.00 3.51
3731 4318 6.370994 AGTGTTGCTTCAAGATCTACTTCATG 59.629 38.462 0.00 0.00 36.61 3.07
3785 4388 1.522092 TGGCGAGCCAGGTGATAAG 59.478 57.895 13.49 0.00 41.89 1.73
3843 4446 2.701951 TGTGACGAGGGACTTTTTAGGT 59.298 45.455 0.00 0.00 41.55 3.08
3948 4551 1.474332 GGTACCTGACGGTGGACCAA 61.474 60.000 4.06 0.00 45.18 3.67
3974 4580 3.394836 GGAGGACAGGAAGGCGCT 61.395 66.667 7.64 0.00 0.00 5.92
4121 4729 1.730501 TGATAGAAGTGTGCAGCAGC 58.269 50.000 0.00 0.00 42.57 5.25
4122 4730 1.277273 TGATAGAAGTGTGCAGCAGCT 59.723 47.619 1.76 0.00 42.74 4.24
4148 4756 0.856641 TCGTTTCTTACTGTGCGCAC 59.143 50.000 33.11 33.11 0.00 5.34
4211 4819 3.488489 CCGTTGAATTAAGGAAAGCACG 58.512 45.455 0.00 0.00 0.00 5.34
4214 4822 4.378616 CGTTGAATTAAGGAAAGCACGTTG 59.621 41.667 0.00 0.00 0.00 4.10
4378 4987 7.151308 AGCTAGCACTGTATTCTCATACAATC 58.849 38.462 18.83 0.00 43.89 2.67
4398 5007 3.937814 TCGATGTACATTTGCTTCAGGT 58.062 40.909 10.30 0.00 0.00 4.00
4430 5039 8.225603 ACAGAAAACAGTTGAAGTCACATAAT 57.774 30.769 0.00 0.00 0.00 1.28
4431 5040 8.131100 ACAGAAAACAGTTGAAGTCACATAATG 58.869 33.333 0.00 0.00 0.00 1.90
4432 5041 8.131100 CAGAAAACAGTTGAAGTCACATAATGT 58.869 33.333 0.00 0.00 0.00 2.71
4433 5042 9.337396 AGAAAACAGTTGAAGTCACATAATGTA 57.663 29.630 0.00 0.00 0.00 2.29
4438 5047 8.830580 ACAGTTGAAGTCACATAATGTATATGC 58.169 33.333 0.00 0.00 0.00 3.14
4439 5048 8.285394 CAGTTGAAGTCACATAATGTATATGCC 58.715 37.037 0.00 0.00 0.00 4.40
4440 5049 7.992608 AGTTGAAGTCACATAATGTATATGCCA 59.007 33.333 0.00 0.00 0.00 4.92
4441 5050 8.786898 GTTGAAGTCACATAATGTATATGCCAT 58.213 33.333 0.00 0.00 0.00 4.40
4442 5051 8.552083 TGAAGTCACATAATGTATATGCCATC 57.448 34.615 0.00 0.00 0.00 3.51
4443 5052 8.377799 TGAAGTCACATAATGTATATGCCATCT 58.622 33.333 0.00 0.00 0.00 2.90
4444 5053 9.875691 GAAGTCACATAATGTATATGCCATCTA 57.124 33.333 0.00 0.00 0.00 1.98
4445 5054 9.658799 AAGTCACATAATGTATATGCCATCTAC 57.341 33.333 0.00 0.00 0.00 2.59
4446 5055 9.040259 AGTCACATAATGTATATGCCATCTACT 57.960 33.333 2.45 0.00 0.00 2.57
4447 5056 9.307121 GTCACATAATGTATATGCCATCTACTC 57.693 37.037 2.45 0.00 0.00 2.59
4448 5057 8.478066 TCACATAATGTATATGCCATCTACTCC 58.522 37.037 2.45 0.00 0.00 3.85
4449 5058 7.712639 CACATAATGTATATGCCATCTACTCCC 59.287 40.741 2.45 0.00 0.00 4.30
4450 5059 7.625280 ACATAATGTATATGCCATCTACTCCCT 59.375 37.037 2.45 0.00 0.00 4.20
4451 5060 6.552445 AATGTATATGCCATCTACTCCCTC 57.448 41.667 2.45 0.00 0.00 4.30
4452 5061 4.353777 TGTATATGCCATCTACTCCCTCC 58.646 47.826 2.45 0.00 0.00 4.30
4453 5062 1.924731 TATGCCATCTACTCCCTCCG 58.075 55.000 0.00 0.00 0.00 4.63
4454 5063 0.105453 ATGCCATCTACTCCCTCCGT 60.105 55.000 0.00 0.00 0.00 4.69
4455 5064 0.325296 TGCCATCTACTCCCTCCGTT 60.325 55.000 0.00 0.00 0.00 4.44
4456 5065 0.389757 GCCATCTACTCCCTCCGTTC 59.610 60.000 0.00 0.00 0.00 3.95
4457 5066 1.041437 CCATCTACTCCCTCCGTTCC 58.959 60.000 0.00 0.00 0.00 3.62
4458 5067 1.411787 CCATCTACTCCCTCCGTTCCT 60.412 57.143 0.00 0.00 0.00 3.36
4459 5068 2.158505 CCATCTACTCCCTCCGTTCCTA 60.159 54.545 0.00 0.00 0.00 2.94
4460 5069 3.563223 CATCTACTCCCTCCGTTCCTAA 58.437 50.000 0.00 0.00 0.00 2.69
4461 5070 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
4462 5071 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
4463 5072 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
4464 5073 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
4465 5074 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
4466 5075 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
4467 5076 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4468 5077 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4469 5078 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4470 5079 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4471 5080 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4472 5081 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4473 5082 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
4474 5083 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
4490 5099 7.784470 AGTCTTTGTAGAGATTTCACTAGGT 57.216 36.000 0.00 0.00 0.00 3.08
4491 5100 7.607250 AGTCTTTGTAGAGATTTCACTAGGTG 58.393 38.462 0.00 0.00 34.45 4.00
4492 5101 6.814146 GTCTTTGTAGAGATTTCACTAGGTGG 59.186 42.308 0.00 0.00 33.87 4.61
4493 5102 6.497259 TCTTTGTAGAGATTTCACTAGGTGGT 59.503 38.462 0.00 0.00 33.87 4.16
4494 5103 5.916661 TGTAGAGATTTCACTAGGTGGTC 57.083 43.478 0.00 0.00 33.87 4.02
4495 5104 5.580998 TGTAGAGATTTCACTAGGTGGTCT 58.419 41.667 0.00 0.65 33.87 3.85
4496 5105 6.728411 TGTAGAGATTTCACTAGGTGGTCTA 58.272 40.000 0.00 0.00 33.87 2.59
4497 5106 6.602406 TGTAGAGATTTCACTAGGTGGTCTAC 59.398 42.308 0.00 0.00 33.87 2.59
4498 5107 5.580998 AGAGATTTCACTAGGTGGTCTACA 58.419 41.667 0.00 0.00 33.87 2.74
4499 5108 6.198639 AGAGATTTCACTAGGTGGTCTACAT 58.801 40.000 0.00 0.00 33.87 2.29
4500 5109 7.355101 AGAGATTTCACTAGGTGGTCTACATA 58.645 38.462 0.00 0.00 33.87 2.29
4501 5110 7.285858 AGAGATTTCACTAGGTGGTCTACATAC 59.714 40.741 0.00 0.00 33.87 2.39
4502 5111 5.571784 TTTCACTAGGTGGTCTACATACG 57.428 43.478 0.00 0.00 33.87 3.06
4503 5112 3.548770 TCACTAGGTGGTCTACATACGG 58.451 50.000 0.00 0.00 33.87 4.02
4504 5113 3.200605 TCACTAGGTGGTCTACATACGGA 59.799 47.826 0.00 0.00 33.87 4.69
4505 5114 3.564644 CACTAGGTGGTCTACATACGGAG 59.435 52.174 0.00 0.00 0.00 4.63
4506 5115 1.400737 AGGTGGTCTACATACGGAGC 58.599 55.000 0.00 0.00 0.00 4.70
4507 5116 1.108776 GGTGGTCTACATACGGAGCA 58.891 55.000 0.00 0.00 37.58 4.26
4508 5117 1.687123 GGTGGTCTACATACGGAGCAT 59.313 52.381 0.00 0.00 41.05 3.79
4509 5118 2.889045 GGTGGTCTACATACGGAGCATA 59.111 50.000 0.00 0.00 41.05 3.14
4510 5119 3.319972 GGTGGTCTACATACGGAGCATAA 59.680 47.826 0.00 0.00 41.05 1.90
4511 5120 4.021368 GGTGGTCTACATACGGAGCATAAT 60.021 45.833 0.00 0.00 41.05 1.28
4512 5121 5.184479 GGTGGTCTACATACGGAGCATAATA 59.816 44.000 0.00 0.00 41.05 0.98
4513 5122 6.323266 GTGGTCTACATACGGAGCATAATAG 58.677 44.000 0.00 0.00 41.05 1.73
4514 5123 6.150641 GTGGTCTACATACGGAGCATAATAGA 59.849 42.308 0.00 0.00 41.05 1.98
4515 5124 6.150641 TGGTCTACATACGGAGCATAATAGAC 59.849 42.308 0.00 0.00 37.59 2.59
4516 5125 6.249359 GTCTACATACGGAGCATAATAGACG 58.751 44.000 0.00 0.00 31.03 4.18
4517 5126 6.091849 GTCTACATACGGAGCATAATAGACGA 59.908 42.308 0.00 0.00 31.03 4.20
4518 5127 5.700722 ACATACGGAGCATAATAGACGAA 57.299 39.130 0.00 0.00 0.00 3.85
4519 5128 6.268825 ACATACGGAGCATAATAGACGAAT 57.731 37.500 0.00 0.00 0.00 3.34
4520 5129 6.323266 ACATACGGAGCATAATAGACGAATC 58.677 40.000 0.00 0.00 0.00 2.52
4521 5130 6.151312 ACATACGGAGCATAATAGACGAATCT 59.849 38.462 0.00 0.00 39.15 2.40
4522 5131 7.336176 ACATACGGAGCATAATAGACGAATCTA 59.664 37.037 0.00 0.00 41.76 1.98
4523 5132 5.940595 ACGGAGCATAATAGACGAATCTAC 58.059 41.667 0.00 0.00 40.32 2.59
4524 5133 5.472478 ACGGAGCATAATAGACGAATCTACA 59.528 40.000 0.00 0.00 40.32 2.74
4525 5134 5.795939 CGGAGCATAATAGACGAATCTACAC 59.204 44.000 0.00 0.00 40.32 2.90
4526 5135 6.348622 CGGAGCATAATAGACGAATCTACACT 60.349 42.308 0.00 0.00 40.32 3.55
4527 5136 7.371936 GGAGCATAATAGACGAATCTACACTT 58.628 38.462 0.00 0.00 40.32 3.16
4528 5137 8.512956 GGAGCATAATAGACGAATCTACACTTA 58.487 37.037 0.00 0.00 40.32 2.24
4529 5138 9.894783 GAGCATAATAGACGAATCTACACTTAA 57.105 33.333 0.00 0.00 40.32 1.85
4535 5144 8.942338 ATAGACGAATCTACACTTAAAATGCA 57.058 30.769 0.00 0.00 40.32 3.96
4536 5145 7.849804 AGACGAATCTACACTTAAAATGCAT 57.150 32.000 0.00 0.00 31.46 3.96
4537 5146 7.910304 AGACGAATCTACACTTAAAATGCATC 58.090 34.615 0.00 0.00 31.46 3.91
4538 5147 7.766278 AGACGAATCTACACTTAAAATGCATCT 59.234 33.333 0.00 0.00 31.46 2.90
4539 5148 8.942338 ACGAATCTACACTTAAAATGCATCTA 57.058 30.769 0.00 0.00 0.00 1.98
4540 5149 9.547753 ACGAATCTACACTTAAAATGCATCTAT 57.452 29.630 0.00 0.00 0.00 1.98
4550 5159 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
4555 5164 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
4556 5165 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
4557 5166 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
4558 5167 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
4559 5168 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
4560 5169 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
4561 5170 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
4562 5171 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
4563 5172 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
4564 5173 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
4565 5174 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
4566 5175 4.404394 ACATCCGTATGTGGTTCATAGTGA 59.596 41.667 0.00 0.00 44.79 3.41
4567 5176 5.105106 ACATCCGTATGTGGTTCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
4568 5177 5.408880 TCCGTATGTGGTTCATAGTGAAA 57.591 39.130 0.00 0.00 38.22 2.69
4569 5178 5.984725 TCCGTATGTGGTTCATAGTGAAAT 58.015 37.500 0.00 0.00 38.22 2.17
4570 5179 6.046593 TCCGTATGTGGTTCATAGTGAAATC 58.953 40.000 0.00 0.00 38.22 2.17
4571 5180 6.049149 CCGTATGTGGTTCATAGTGAAATCT 58.951 40.000 0.00 0.00 38.22 2.40
4572 5181 6.201044 CCGTATGTGGTTCATAGTGAAATCTC 59.799 42.308 0.00 0.00 38.22 2.75
4573 5182 6.980978 CGTATGTGGTTCATAGTGAAATCTCT 59.019 38.462 0.00 0.00 38.22 3.10
4574 5183 8.135529 CGTATGTGGTTCATAGTGAAATCTCTA 58.864 37.037 0.00 0.00 38.22 2.43
4575 5184 9.250624 GTATGTGGTTCATAGTGAAATCTCTAC 57.749 37.037 0.00 0.00 38.22 2.59
4576 5185 7.239763 TGTGGTTCATAGTGAAATCTCTACA 57.760 36.000 0.00 0.00 38.22 2.74
4577 5186 7.676004 TGTGGTTCATAGTGAAATCTCTACAA 58.324 34.615 0.00 0.00 38.22 2.41
4578 5187 8.154203 TGTGGTTCATAGTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 38.22 2.83
4579 5188 8.660373 GTGGTTCATAGTGAAATCTCTACAAAG 58.340 37.037 0.00 0.00 38.22 2.77
4580 5189 8.593679 TGGTTCATAGTGAAATCTCTACAAAGA 58.406 33.333 0.00 0.00 38.22 2.52
4581 5190 8.874816 GGTTCATAGTGAAATCTCTACAAAGAC 58.125 37.037 0.00 0.00 38.22 3.01
4582 5191 9.646427 GTTCATAGTGAAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 38.22 3.24
4599 5208 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
4600 5209 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
4601 5210 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4602 5211 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4603 5212 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4604 5213 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4605 5214 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
4606 5215 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
4607 5216 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
4634 5243 6.390048 AATAGTATATCCGAGACTCCCTCA 57.610 41.667 0.00 0.00 42.06 3.86
4712 5321 2.315901 CTGGAAATTTTGGACGCGTTC 58.684 47.619 15.53 13.50 0.00 3.95
4713 5322 1.676529 TGGAAATTTTGGACGCGTTCA 59.323 42.857 18.26 18.26 0.00 3.18
4714 5323 2.099263 TGGAAATTTTGGACGCGTTCAA 59.901 40.909 28.63 28.63 0.00 2.69
4723 5332 3.864686 CGCGTTCAATCAGGCGGG 61.865 66.667 0.00 0.00 45.12 6.13
4749 5358 9.305925 GATAATTGCATTTCTTTAGGGAAACTG 57.694 33.333 0.00 0.00 37.91 3.16
4751 5360 3.894427 TGCATTTCTTTAGGGAAACTGCA 59.106 39.130 15.55 15.55 41.41 4.41
4768 5377 4.679662 ACTGCATTGCTTTATTGATCAGC 58.320 39.130 10.49 0.00 0.00 4.26
4778 5387 5.850128 GCTTTATTGATCAGCGATGTTCATC 59.150 40.000 14.59 4.70 0.00 2.92
4779 5388 5.580911 TTATTGATCAGCGATGTTCATCG 57.419 39.130 24.77 24.77 45.99 3.84
4783 5392 2.602257 TCAGCGATGTTCATCGGAAT 57.398 45.000 28.11 6.98 43.66 3.01
4792 5401 5.959527 CGATGTTCATCGGAATTGTTACAAG 59.040 40.000 22.40 0.00 40.12 3.16
4810 5434 1.137697 AGATCATGAGCATGCCTCCA 58.862 50.000 15.66 10.80 39.98 3.86
4811 5435 1.202782 AGATCATGAGCATGCCTCCAC 60.203 52.381 15.66 1.82 39.98 4.02
4827 5451 5.163561 TGCCTCCACAAGTTTAAAGAAACAG 60.164 40.000 3.60 0.00 46.30 3.16
4859 5483 9.832445 TTAGCTAAACTATCATCCTCGAAATTT 57.168 29.630 2.97 0.00 0.00 1.82
4860 5484 8.371770 AGCTAAACTATCATCCTCGAAATTTC 57.628 34.615 8.20 8.20 0.00 2.17
4861 5485 8.207545 AGCTAAACTATCATCCTCGAAATTTCT 58.792 33.333 15.92 0.00 0.00 2.52
4864 5488 5.533482 ACTATCATCCTCGAAATTTCTCCG 58.467 41.667 15.92 4.14 0.00 4.63
4876 5500 5.961843 CGAAATTTCTCCGTCTTGATTCATG 59.038 40.000 15.92 0.00 0.00 3.07
4911 5535 4.737054 AGCCTAAAAATCATCTTTGCGTG 58.263 39.130 0.00 0.00 0.00 5.34
4932 5556 5.580691 CGTGCTATGAGTTTTCTGATTACCA 59.419 40.000 0.00 0.00 0.00 3.25
4935 5559 5.880332 GCTATGAGTTTTCTGATTACCACCA 59.120 40.000 0.00 0.00 0.00 4.17
4936 5560 6.543831 GCTATGAGTTTTCTGATTACCACCAT 59.456 38.462 0.00 0.00 0.00 3.55
4948 5572 2.543037 ACCACCATATTTTGACCCCC 57.457 50.000 0.00 0.00 0.00 5.40
4973 5597 2.558313 GGCACGCTCAAGCTCAAC 59.442 61.111 0.00 0.00 39.32 3.18
4981 5605 3.201290 CGCTCAAGCTCAACAATATCCT 58.799 45.455 0.00 0.00 39.32 3.24
4987 5611 6.417258 TCAAGCTCAACAATATCCTTGATGA 58.583 36.000 0.00 0.00 35.22 2.92
5040 5664 6.757237 ACTCTGAATATTCGAATCAGATGCT 58.243 36.000 23.37 11.19 46.07 3.79
5041 5665 7.890515 ACTCTGAATATTCGAATCAGATGCTA 58.109 34.615 23.37 7.56 46.07 3.49
5042 5666 7.812191 ACTCTGAATATTCGAATCAGATGCTAC 59.188 37.037 23.37 6.17 46.07 3.58
5043 5667 7.890515 TCTGAATATTCGAATCAGATGCTACT 58.109 34.615 20.69 0.00 43.35 2.57
5044 5668 7.811713 TCTGAATATTCGAATCAGATGCTACTG 59.188 37.037 20.69 4.74 43.35 2.74
5045 5669 6.367149 TGAATATTCGAATCAGATGCTACTGC 59.633 38.462 15.25 0.00 37.75 4.40
5046 5670 3.808466 TTCGAATCAGATGCTACTGCT 57.192 42.857 0.00 0.00 40.48 4.24
5047 5671 3.808466 TCGAATCAGATGCTACTGCTT 57.192 42.857 5.98 3.44 40.48 3.91
5048 5672 3.451526 TCGAATCAGATGCTACTGCTTG 58.548 45.455 5.98 1.69 40.48 4.01
5049 5673 3.131046 TCGAATCAGATGCTACTGCTTGA 59.869 43.478 5.98 3.49 40.48 3.02
5050 5674 3.490155 CGAATCAGATGCTACTGCTTGAG 59.510 47.826 5.98 0.00 40.48 3.02
5051 5675 2.306341 TCAGATGCTACTGCTTGAGC 57.694 50.000 0.00 0.00 40.48 4.26
5052 5676 1.829849 TCAGATGCTACTGCTTGAGCT 59.170 47.619 4.44 0.00 42.66 4.09
5053 5677 2.235650 TCAGATGCTACTGCTTGAGCTT 59.764 45.455 4.44 0.40 42.66 3.74
5054 5678 2.608546 CAGATGCTACTGCTTGAGCTTC 59.391 50.000 4.44 10.27 41.06 3.86
5055 5679 2.500910 AGATGCTACTGCTTGAGCTTCT 59.499 45.455 13.29 13.29 44.17 2.85
5056 5680 2.376808 TGCTACTGCTTGAGCTTCTC 57.623 50.000 4.44 0.00 42.66 2.87
5057 5681 1.898472 TGCTACTGCTTGAGCTTCTCT 59.102 47.619 4.44 0.00 42.66 3.10
5058 5682 3.092301 TGCTACTGCTTGAGCTTCTCTA 58.908 45.455 4.44 0.00 42.66 2.43
5059 5683 3.119316 TGCTACTGCTTGAGCTTCTCTAC 60.119 47.826 4.44 0.00 42.66 2.59
5060 5684 3.119316 GCTACTGCTTGAGCTTCTCTACA 60.119 47.826 4.44 0.00 42.66 2.74
5061 5685 3.311486 ACTGCTTGAGCTTCTCTACAC 57.689 47.619 4.44 0.00 42.66 2.90
5062 5686 2.257894 CTGCTTGAGCTTCTCTACACG 58.742 52.381 4.44 0.00 42.66 4.49
5063 5687 0.995728 GCTTGAGCTTCTCTACACGC 59.004 55.000 0.00 0.00 38.21 5.34
5064 5688 1.634702 CTTGAGCTTCTCTACACGCC 58.365 55.000 0.00 0.00 0.00 5.68
5065 5689 0.966179 TTGAGCTTCTCTACACGCCA 59.034 50.000 0.00 0.00 0.00 5.69
5066 5690 0.966179 TGAGCTTCTCTACACGCCAA 59.034 50.000 0.00 0.00 0.00 4.52
5067 5691 1.343142 TGAGCTTCTCTACACGCCAAA 59.657 47.619 0.00 0.00 0.00 3.28
5068 5692 1.996191 GAGCTTCTCTACACGCCAAAG 59.004 52.381 0.00 0.00 0.00 2.77
5069 5693 0.444260 GCTTCTCTACACGCCAAAGC 59.556 55.000 0.00 0.00 33.20 3.51
5070 5694 1.941668 GCTTCTCTACACGCCAAAGCT 60.942 52.381 0.00 0.00 36.92 3.74
5071 5695 2.417719 CTTCTCTACACGCCAAAGCTT 58.582 47.619 0.00 0.00 36.60 3.74
5072 5696 2.080286 TCTCTACACGCCAAAGCTTC 57.920 50.000 0.00 0.00 36.60 3.86
5073 5697 1.343142 TCTCTACACGCCAAAGCTTCA 59.657 47.619 0.00 0.00 36.60 3.02
5074 5698 2.143122 CTCTACACGCCAAAGCTTCAA 58.857 47.619 0.00 0.00 36.60 2.69
5075 5699 2.143122 TCTACACGCCAAAGCTTCAAG 58.857 47.619 0.00 0.00 36.60 3.02
5076 5700 1.197721 CTACACGCCAAAGCTTCAAGG 59.802 52.381 0.00 3.63 36.60 3.61
5077 5701 1.286880 CACGCCAAAGCTTCAAGGG 59.713 57.895 0.00 2.57 36.60 3.95
5078 5702 1.152756 ACGCCAAAGCTTCAAGGGT 60.153 52.632 0.00 3.25 36.60 4.34
5079 5703 0.755327 ACGCCAAAGCTTCAAGGGTT 60.755 50.000 0.00 0.00 36.60 4.11
5080 5704 0.318955 CGCCAAAGCTTCAAGGGTTG 60.319 55.000 0.00 0.00 36.60 3.77
5081 5705 0.033920 GCCAAAGCTTCAAGGGTTGG 59.966 55.000 0.00 2.69 35.50 3.77
5082 5706 1.703411 CCAAAGCTTCAAGGGTTGGA 58.297 50.000 0.00 0.00 0.00 3.53
5083 5707 2.038659 CCAAAGCTTCAAGGGTTGGAA 58.961 47.619 0.00 0.00 0.00 3.53
5084 5708 2.634453 CCAAAGCTTCAAGGGTTGGAAT 59.366 45.455 0.00 0.00 0.00 3.01
5085 5709 3.555586 CCAAAGCTTCAAGGGTTGGAATG 60.556 47.826 0.00 0.00 0.00 2.67
5086 5710 1.928868 AGCTTCAAGGGTTGGAATGG 58.071 50.000 0.00 0.00 0.00 3.16
5087 5711 1.428912 AGCTTCAAGGGTTGGAATGGA 59.571 47.619 0.00 0.00 0.00 3.41
5088 5712 2.158325 AGCTTCAAGGGTTGGAATGGAA 60.158 45.455 0.00 0.00 0.00 3.53
5089 5713 2.029020 GCTTCAAGGGTTGGAATGGAAC 60.029 50.000 0.00 0.00 0.00 3.62
5144 5768 2.796500 GAGGTAGAGTCCCTCACGG 58.204 63.158 9.83 0.00 46.46 4.94
5149 5773 1.204231 GTAGAGTCCCTCACGGTTTCC 59.796 57.143 0.00 0.00 32.06 3.13
5163 5787 3.323758 TTTCCGCATACTGCCGCCT 62.324 57.895 0.00 0.00 41.12 5.52
5210 5836 5.163581 GCTAGAACTGCATCCACATTGATTT 60.164 40.000 0.00 0.00 0.00 2.17
5211 5837 5.733620 AGAACTGCATCCACATTGATTTT 57.266 34.783 0.00 0.00 0.00 1.82
5212 5838 6.105397 AGAACTGCATCCACATTGATTTTT 57.895 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 164 4.647611 TCAACGGTGTATCTGGAAAATGT 58.352 39.130 0.00 0.00 0.00 2.71
169 171 5.371115 AAAATGTTCAACGGTGTATCTGG 57.629 39.130 0.00 0.00 0.00 3.86
184 186 8.094798 ACATGTATGTGTACTCGAAAAATGTT 57.905 30.769 0.00 0.00 40.03 2.71
230 232 9.361315 GTTCTAACACTTAACAAAATGTTTGGT 57.639 29.630 0.54 1.28 41.45 3.67
575 640 3.236896 GGGACGGAGGGAGTATATTTCA 58.763 50.000 0.00 0.00 0.00 2.69
602 667 8.556213 AGTGTCTCAACTTTGTAGTGTAAAAA 57.444 30.769 0.00 0.00 34.01 1.94
603 668 8.556213 AAGTGTCTCAACTTTGTAGTGTAAAA 57.444 30.769 0.00 0.00 37.05 1.52
604 669 9.826574 ATAAGTGTCTCAACTTTGTAGTGTAAA 57.173 29.630 0.00 0.00 40.77 2.01
606 671 9.826574 AAATAAGTGTCTCAACTTTGTAGTGTA 57.173 29.630 0.00 0.00 40.77 2.90
607 672 8.732746 AAATAAGTGTCTCAACTTTGTAGTGT 57.267 30.769 0.00 0.00 40.77 3.55
634 713 0.106116 AGACATACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
637 716 2.025226 TCTCAAGACATACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
638 717 2.656002 TCTCAAGACATACTCCCTCCG 58.344 52.381 0.00 0.00 0.00 4.63
639 718 6.926630 ATATTCTCAAGACATACTCCCTCC 57.073 41.667 0.00 0.00 0.00 4.30
640 719 9.267084 GAAAATATTCTCAAGACATACTCCCTC 57.733 37.037 0.00 0.00 32.57 4.30
641 720 8.772250 TGAAAATATTCTCAAGACATACTCCCT 58.228 33.333 0.00 0.00 36.48 4.20
642 721 8.964476 TGAAAATATTCTCAAGACATACTCCC 57.036 34.615 0.00 0.00 36.48 4.30
894 984 1.228245 CCAAGAGTGGTGGGTGGTG 60.228 63.158 0.00 0.00 40.42 4.17
981 1082 1.078848 GAGCGAGTGGGTGCTGAAT 60.079 57.895 0.00 0.00 42.60 2.57
982 1083 2.343758 GAGCGAGTGGGTGCTGAA 59.656 61.111 0.00 0.00 42.60 3.02
983 1084 4.056125 CGAGCGAGTGGGTGCTGA 62.056 66.667 0.00 0.00 42.60 4.26
1002 1109 0.259647 TGCTCCTTGATTGATGGGGG 59.740 55.000 0.00 0.00 0.00 5.40
1632 1800 6.864342 TGTTCTATTAGTTCCTACTGCAGAC 58.136 40.000 23.35 7.64 35.78 3.51
1735 2080 5.836024 AGGGTCTATGGTGTAAGTTCAAA 57.164 39.130 0.00 0.00 0.00 2.69
1797 2183 1.003118 TGGCCGATTGCTTGAAGTACT 59.997 47.619 0.00 0.00 40.92 2.73
1877 2263 8.863086 TGAAATTCACAATTCCTGAAAGAAGAT 58.137 29.630 0.00 0.00 34.07 2.40
1882 2269 6.453092 AGCTGAAATTCACAATTCCTGAAAG 58.547 36.000 0.00 0.00 31.48 2.62
2055 2444 1.271325 TGACAATCGGGACATTGCTGT 60.271 47.619 0.00 0.00 37.28 4.40
2060 2449 3.067180 GCAATGATGACAATCGGGACATT 59.933 43.478 0.00 0.00 35.37 2.71
2064 2453 1.212688 AGGCAATGATGACAATCGGGA 59.787 47.619 0.00 0.00 36.86 5.14
2082 2471 2.684881 CCTGATCGATTGGAACCAAAGG 59.315 50.000 10.36 7.68 39.55 3.11
2116 2505 4.157849 TGTGGGACATGTACAGACAAAA 57.842 40.909 10.99 0.00 44.52 2.44
2129 2518 1.098712 GGCACGACTTTTGTGGGACA 61.099 55.000 0.00 0.00 37.80 4.02
2160 2549 2.618709 CACTGTCCCCAAGAAACTGAAC 59.381 50.000 0.00 0.00 0.00 3.18
2170 2559 4.641645 CGCTGGCACTGTCCCCAA 62.642 66.667 0.00 0.00 0.00 4.12
2206 2595 3.181506 GCTTGAGATACCTTTCGCTTTGG 60.182 47.826 0.00 0.00 0.00 3.28
2211 2600 1.666189 GGTGCTTGAGATACCTTTCGC 59.334 52.381 0.00 0.00 0.00 4.70
2220 2609 3.672808 CAGAAGAAGTGGTGCTTGAGAT 58.327 45.455 0.00 0.00 37.59 2.75
2307 2699 3.342377 TGACTTGTGGATATTGCGGAA 57.658 42.857 0.00 0.00 0.00 4.30
2428 2824 2.656002 AGAATGACGAATCGAGAGGGA 58.344 47.619 10.55 0.00 0.00 4.20
2436 2832 9.915629 AGTATGGTAGATAAAGAATGACGAATC 57.084 33.333 0.00 0.00 0.00 2.52
2468 2867 5.178996 CAGAGGCATACATTTAGCTAAGCAG 59.821 44.000 6.24 3.59 0.00 4.24
2490 2889 6.813649 CGGATCACCATATCAAATACCTACAG 59.186 42.308 0.00 0.00 35.59 2.74
2541 2940 2.415168 CACGCATTCCAGTTACGTTGAT 59.585 45.455 0.00 0.00 34.19 2.57
2620 3019 4.416516 TGAGTCACTATCCTGTCCAGAAA 58.583 43.478 0.00 0.00 0.00 2.52
2650 3049 1.303561 GTGTGCTCTTCATGGCCCA 60.304 57.895 0.00 0.00 0.00 5.36
2729 3128 1.485294 TAAGAAACCCTGAGGCGCCA 61.485 55.000 31.54 7.98 36.11 5.69
2731 3130 1.369839 GCTAAGAAACCCTGAGGCGC 61.370 60.000 0.00 0.00 36.11 6.53
2733 3132 0.394488 GGGCTAAGAAACCCTGAGGC 60.394 60.000 0.00 0.00 45.80 4.70
2749 3148 2.115343 AATCTCCAGACTTTTCGGGC 57.885 50.000 0.00 0.00 37.04 6.13
2813 3212 8.589335 AGCGAACAATATTACGATATTTGTCT 57.411 30.769 11.24 0.00 36.53 3.41
2816 3215 8.705134 TGGTAGCGAACAATATTACGATATTTG 58.295 33.333 11.24 0.00 36.53 2.32
2876 3275 1.003355 GCCTAGCAAGCCACACTCA 60.003 57.895 0.00 0.00 0.00 3.41
3004 3404 5.018522 ACCCCAGTCTATACCCATGGTATAT 59.981 44.000 11.73 10.65 45.87 0.86
3308 3714 5.144832 TGTTTATCAGATACCCATCCGAGA 58.855 41.667 0.00 0.00 0.00 4.04
3528 3963 2.591923 TCACAGGGCACTTGCATTTAA 58.408 42.857 3.15 0.00 44.36 1.52
3571 4008 0.842030 TGGATGGAGTGCAGGGACTT 60.842 55.000 0.00 0.00 34.60 3.01
3588 4025 7.596995 CACTTTCTACTAGTCAGAGAAACTTGG 59.403 40.741 13.09 8.01 34.95 3.61
3637 4142 5.303845 TCATATGTATTCTCTGCAGTCTGCT 59.696 40.000 24.76 6.81 45.31 4.24
3818 4421 0.314302 AAAGTCCCTCGTCACACTCG 59.686 55.000 0.00 0.00 0.00 4.18
3843 4446 2.897969 GTGGTCCAGGTCAAAGTAGAGA 59.102 50.000 0.00 0.00 0.00 3.10
3903 4506 0.530650 CGCACCCATAAGCATCGTCT 60.531 55.000 0.00 0.00 0.00 4.18
4121 4729 4.092091 GCACAGTAAGAAACGAATCCAGAG 59.908 45.833 0.00 0.00 0.00 3.35
4122 4730 3.994392 GCACAGTAAGAAACGAATCCAGA 59.006 43.478 0.00 0.00 0.00 3.86
4148 4756 2.431419 AGATCCAGCATCAGTCAGTCAG 59.569 50.000 0.00 0.00 33.29 3.51
4191 4799 4.141855 ACGTGCTTTCCTTAATTCAACG 57.858 40.909 0.00 0.00 0.00 4.10
4196 4804 4.142038 AGTCCAACGTGCTTTCCTTAATT 58.858 39.130 0.00 0.00 0.00 1.40
4211 4819 4.184629 CTGATGCTACCAACTAGTCCAAC 58.815 47.826 0.00 0.00 0.00 3.77
4214 4822 3.447586 TCACTGATGCTACCAACTAGTCC 59.552 47.826 0.00 0.00 0.00 3.85
4318 4927 4.727507 TCTAAGATCAACTCCAGTGAGC 57.272 45.455 0.00 0.00 42.74 4.26
4321 4930 6.871844 TCTGAATCTAAGATCAACTCCAGTG 58.128 40.000 0.00 0.00 0.00 3.66
4322 4931 7.487822 TTCTGAATCTAAGATCAACTCCAGT 57.512 36.000 0.00 0.00 0.00 4.00
4323 4932 8.663911 GTTTTCTGAATCTAAGATCAACTCCAG 58.336 37.037 0.00 0.00 0.00 3.86
4324 4933 8.156820 TGTTTTCTGAATCTAAGATCAACTCCA 58.843 33.333 0.00 0.00 0.00 3.86
4325 4934 8.447053 GTGTTTTCTGAATCTAAGATCAACTCC 58.553 37.037 0.00 0.00 0.00 3.85
4378 4987 3.684305 TGACCTGAAGCAAATGTACATCG 59.316 43.478 9.23 4.86 0.00 3.84
4430 5039 4.353777 GGAGGGAGTAGATGGCATATACA 58.646 47.826 28.22 0.00 29.63 2.29
4431 5040 3.381908 CGGAGGGAGTAGATGGCATATAC 59.618 52.174 21.54 21.54 0.00 1.47
4432 5041 3.011369 ACGGAGGGAGTAGATGGCATATA 59.989 47.826 0.00 0.00 0.00 0.86
4433 5042 2.225394 ACGGAGGGAGTAGATGGCATAT 60.225 50.000 0.00 0.00 0.00 1.78
4434 5043 1.147191 ACGGAGGGAGTAGATGGCATA 59.853 52.381 0.00 0.00 0.00 3.14
4435 5044 0.105453 ACGGAGGGAGTAGATGGCAT 60.105 55.000 0.00 0.00 0.00 4.40
4436 5045 0.325296 AACGGAGGGAGTAGATGGCA 60.325 55.000 0.00 0.00 0.00 4.92
4437 5046 0.389757 GAACGGAGGGAGTAGATGGC 59.610 60.000 0.00 0.00 0.00 4.40
4438 5047 1.041437 GGAACGGAGGGAGTAGATGG 58.959 60.000 0.00 0.00 0.00 3.51
4439 5048 2.074729 AGGAACGGAGGGAGTAGATG 57.925 55.000 0.00 0.00 0.00 2.90
4440 5049 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
4441 5050 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
4442 5051 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
4443 5052 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
4444 5053 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4445 5054 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4446 5055 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4447 5056 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4448 5057 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
4449 5058 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
4464 5073 9.310449 ACCTAGTGAAATCTCTACAAAGACTTA 57.690 33.333 0.00 0.00 0.00 2.24
4465 5074 8.091449 CACCTAGTGAAATCTCTACAAAGACTT 58.909 37.037 0.00 0.00 35.23 3.01
4466 5075 7.310113 CCACCTAGTGAAATCTCTACAAAGACT 60.310 40.741 0.00 0.00 35.23 3.24
4467 5076 6.814146 CCACCTAGTGAAATCTCTACAAAGAC 59.186 42.308 0.00 0.00 35.23 3.01
4468 5077 6.497259 ACCACCTAGTGAAATCTCTACAAAGA 59.503 38.462 0.00 0.00 35.23 2.52
4469 5078 6.702329 ACCACCTAGTGAAATCTCTACAAAG 58.298 40.000 0.00 0.00 35.23 2.77
4470 5079 6.497259 AGACCACCTAGTGAAATCTCTACAAA 59.503 38.462 0.00 0.00 35.23 2.83
4471 5080 6.017192 AGACCACCTAGTGAAATCTCTACAA 58.983 40.000 0.00 0.00 35.23 2.41
4472 5081 5.580998 AGACCACCTAGTGAAATCTCTACA 58.419 41.667 0.00 0.00 35.23 2.74
4473 5082 6.602406 TGTAGACCACCTAGTGAAATCTCTAC 59.398 42.308 0.00 0.00 35.23 2.59
4474 5083 6.728411 TGTAGACCACCTAGTGAAATCTCTA 58.272 40.000 0.00 0.00 35.23 2.43
4475 5084 5.580998 TGTAGACCACCTAGTGAAATCTCT 58.419 41.667 0.00 0.00 35.23 3.10
4476 5085 5.916661 TGTAGACCACCTAGTGAAATCTC 57.083 43.478 0.00 0.00 35.23 2.75
4477 5086 6.039493 CGTATGTAGACCACCTAGTGAAATCT 59.961 42.308 0.00 0.00 35.23 2.40
4478 5087 6.207213 CGTATGTAGACCACCTAGTGAAATC 58.793 44.000 0.00 0.00 35.23 2.17
4479 5088 5.068723 CCGTATGTAGACCACCTAGTGAAAT 59.931 44.000 0.00 0.00 35.23 2.17
4480 5089 4.400251 CCGTATGTAGACCACCTAGTGAAA 59.600 45.833 0.00 0.00 35.23 2.69
4481 5090 3.949754 CCGTATGTAGACCACCTAGTGAA 59.050 47.826 0.00 0.00 35.23 3.18
4482 5091 3.200605 TCCGTATGTAGACCACCTAGTGA 59.799 47.826 0.00 0.00 35.23 3.41
4483 5092 3.548770 TCCGTATGTAGACCACCTAGTG 58.451 50.000 0.00 0.00 0.00 2.74
4484 5093 3.818180 CTCCGTATGTAGACCACCTAGT 58.182 50.000 0.00 0.00 0.00 2.57
4485 5094 2.553172 GCTCCGTATGTAGACCACCTAG 59.447 54.545 0.00 0.00 0.00 3.02
4486 5095 2.092267 TGCTCCGTATGTAGACCACCTA 60.092 50.000 0.00 0.00 0.00 3.08
4487 5096 1.341679 TGCTCCGTATGTAGACCACCT 60.342 52.381 0.00 0.00 0.00 4.00
4488 5097 1.108776 TGCTCCGTATGTAGACCACC 58.891 55.000 0.00 0.00 0.00 4.61
4489 5098 4.579454 TTATGCTCCGTATGTAGACCAC 57.421 45.455 0.00 0.00 0.00 4.16
4490 5099 6.150641 GTCTATTATGCTCCGTATGTAGACCA 59.849 42.308 0.00 0.00 33.85 4.02
4491 5100 6.553524 GTCTATTATGCTCCGTATGTAGACC 58.446 44.000 0.00 0.00 33.85 3.85
4492 5101 6.091849 TCGTCTATTATGCTCCGTATGTAGAC 59.908 42.308 0.00 0.00 35.61 2.59
4493 5102 6.168389 TCGTCTATTATGCTCCGTATGTAGA 58.832 40.000 0.00 0.00 0.00 2.59
4494 5103 6.418585 TCGTCTATTATGCTCCGTATGTAG 57.581 41.667 0.00 0.00 0.00 2.74
4495 5104 6.806388 TTCGTCTATTATGCTCCGTATGTA 57.194 37.500 0.00 0.00 0.00 2.29
4496 5105 5.700722 TTCGTCTATTATGCTCCGTATGT 57.299 39.130 0.00 0.00 0.00 2.29
4497 5106 6.556212 AGATTCGTCTATTATGCTCCGTATG 58.444 40.000 0.00 0.00 0.00 2.39
4498 5107 6.761099 AGATTCGTCTATTATGCTCCGTAT 57.239 37.500 0.00 0.00 0.00 3.06
4499 5108 6.652062 TGTAGATTCGTCTATTATGCTCCGTA 59.348 38.462 0.00 0.00 0.00 4.02
4500 5109 5.472478 TGTAGATTCGTCTATTATGCTCCGT 59.528 40.000 0.00 0.00 0.00 4.69
4501 5110 5.795939 GTGTAGATTCGTCTATTATGCTCCG 59.204 44.000 0.00 0.00 0.00 4.63
4502 5111 6.915349 AGTGTAGATTCGTCTATTATGCTCC 58.085 40.000 0.00 0.00 0.00 4.70
4503 5112 9.894783 TTAAGTGTAGATTCGTCTATTATGCTC 57.105 33.333 0.00 0.00 0.00 4.26
4509 5118 9.378551 TGCATTTTAAGTGTAGATTCGTCTATT 57.621 29.630 0.00 0.00 0.00 1.73
4510 5119 8.942338 TGCATTTTAAGTGTAGATTCGTCTAT 57.058 30.769 0.00 0.00 0.00 1.98
4511 5120 8.942338 ATGCATTTTAAGTGTAGATTCGTCTA 57.058 30.769 0.00 0.00 0.00 2.59
4512 5121 7.766278 AGATGCATTTTAAGTGTAGATTCGTCT 59.234 33.333 0.00 0.00 0.00 4.18
4513 5122 7.910304 AGATGCATTTTAAGTGTAGATTCGTC 58.090 34.615 0.00 0.00 0.00 4.20
4514 5123 7.849804 AGATGCATTTTAAGTGTAGATTCGT 57.150 32.000 0.00 0.00 0.00 3.85
4524 5133 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
4528 5137 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
4529 5138 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
4530 5139 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
4531 5140 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
4532 5141 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
4533 5142 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
4534 5143 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
4535 5144 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
4536 5145 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
4537 5146 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
4538 5147 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
4539 5148 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
4540 5149 7.449086 TCACTATGAACCACATACGGATGTATA 59.551 37.037 14.23 6.48 44.82 1.47
4541 5150 6.266786 TCACTATGAACCACATACGGATGTAT 59.733 38.462 14.23 5.54 44.82 2.29
4542 5151 5.595133 TCACTATGAACCACATACGGATGTA 59.405 40.000 14.23 0.00 44.82 2.29
4543 5152 5.105106 TTCACTATGAACCACATACGGATGT 60.105 40.000 7.68 7.68 37.89 3.06
4544 5153 4.944048 TCACTATGAACCACATACGGATG 58.056 43.478 5.94 5.94 40.07 3.51
4545 5154 5.607939 TTCACTATGAACCACATACGGAT 57.392 39.130 0.00 0.00 40.07 4.18
4546 5155 5.408880 TTTCACTATGAACCACATACGGA 57.591 39.130 0.00 0.00 35.89 4.69
4547 5156 6.049149 AGATTTCACTATGAACCACATACGG 58.951 40.000 0.00 0.00 35.89 4.02
4548 5157 6.980978 AGAGATTTCACTATGAACCACATACG 59.019 38.462 0.00 0.00 35.89 3.06
4549 5158 9.250624 GTAGAGATTTCACTATGAACCACATAC 57.749 37.037 0.00 0.00 35.89 2.39
4550 5159 8.977412 TGTAGAGATTTCACTATGAACCACATA 58.023 33.333 0.00 0.00 35.89 2.29
4551 5160 7.851228 TGTAGAGATTTCACTATGAACCACAT 58.149 34.615 0.00 0.00 35.89 3.21
4552 5161 7.239763 TGTAGAGATTTCACTATGAACCACA 57.760 36.000 0.00 0.00 35.89 4.17
4553 5162 8.547967 TTTGTAGAGATTTCACTATGAACCAC 57.452 34.615 0.00 0.00 35.89 4.16
4554 5163 8.593679 TCTTTGTAGAGATTTCACTATGAACCA 58.406 33.333 0.00 0.00 35.89 3.67
4555 5164 8.874816 GTCTTTGTAGAGATTTCACTATGAACC 58.125 37.037 0.00 0.00 35.89 3.62
4556 5165 9.646427 AGTCTTTGTAGAGATTTCACTATGAAC 57.354 33.333 0.00 0.00 35.89 3.18
4574 5183 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
4575 5184 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
4576 5185 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4577 5186 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4578 5187 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4579 5188 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4580 5189 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4581 5190 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4590 5199 8.789782 ACTATTATATATACTCCCTCCGTTCCT 58.210 37.037 0.00 0.00 0.00 3.36
4591 5200 8.993404 ACTATTATATATACTCCCTCCGTTCC 57.007 38.462 0.00 0.00 0.00 3.62
4608 5217 9.222098 TGAGGGAGTCTCGGATATACTATTATA 57.778 37.037 0.00 0.00 45.32 0.98
4609 5218 7.994334 GTGAGGGAGTCTCGGATATACTATTAT 59.006 40.741 0.00 0.00 45.32 1.28
4610 5219 7.182387 AGTGAGGGAGTCTCGGATATACTATTA 59.818 40.741 0.00 0.00 45.32 0.98
4611 5220 6.012333 AGTGAGGGAGTCTCGGATATACTATT 60.012 42.308 0.00 0.00 45.32 1.73
4615 5224 4.023726 AGTGAGGGAGTCTCGGATATAC 57.976 50.000 0.00 0.00 45.32 1.47
4622 5231 1.133407 GCAAGTAGTGAGGGAGTCTCG 59.867 57.143 0.00 0.00 45.32 4.04
4676 5285 3.914426 TCCAGGAAGCCTAACAGATTC 57.086 47.619 0.00 0.00 29.64 2.52
4680 5289 5.473039 CAAAATTTCCAGGAAGCCTAACAG 58.527 41.667 1.07 0.00 29.64 3.16
4685 5294 2.899900 GTCCAAAATTTCCAGGAAGCCT 59.100 45.455 1.07 0.00 0.00 4.58
4712 5321 1.955778 TGCAATTATCCCGCCTGATTG 59.044 47.619 0.00 0.00 0.00 2.67
4713 5322 2.363306 TGCAATTATCCCGCCTGATT 57.637 45.000 0.00 0.00 0.00 2.57
4714 5323 2.592102 ATGCAATTATCCCGCCTGAT 57.408 45.000 0.00 0.00 0.00 2.90
4723 5332 9.305925 CAGTTTCCCTAAAGAAATGCAATTATC 57.694 33.333 0.00 0.00 38.01 1.75
4749 5358 3.956233 TCGCTGATCAATAAAGCAATGC 58.044 40.909 0.00 0.00 36.73 3.56
4751 5360 5.762825 ACATCGCTGATCAATAAAGCAAT 57.237 34.783 0.00 0.00 36.73 3.56
4778 5387 5.065090 TGCTCATGATCTTGTAACAATTCCG 59.935 40.000 8.33 0.00 0.00 4.30
4779 5388 6.441093 TGCTCATGATCTTGTAACAATTCC 57.559 37.500 8.33 0.00 0.00 3.01
4783 5392 4.096833 GGCATGCTCATGATCTTGTAACAA 59.903 41.667 18.92 0.00 41.20 2.83
4792 5401 1.236628 GTGGAGGCATGCTCATGATC 58.763 55.000 18.92 9.70 41.20 2.92
4859 5483 3.118665 TCATGCATGAATCAAGACGGAGA 60.119 43.478 26.87 0.00 33.08 3.71
4860 5484 3.200483 TCATGCATGAATCAAGACGGAG 58.800 45.455 26.87 0.00 33.08 4.63
4861 5485 3.264998 TCATGCATGAATCAAGACGGA 57.735 42.857 26.87 0.00 33.08 4.69
4864 5488 6.327154 TGTCATTTCATGCATGAATCAAGAC 58.673 36.000 35.87 33.08 45.30 3.01
4876 5500 6.591062 TGATTTTTAGGCTTGTCATTTCATGC 59.409 34.615 0.00 0.00 37.63 4.06
4888 5512 5.163513 CACGCAAAGATGATTTTTAGGCTT 58.836 37.500 0.00 0.00 0.00 4.35
4889 5513 4.737054 CACGCAAAGATGATTTTTAGGCT 58.263 39.130 0.00 0.00 0.00 4.58
4890 5514 3.304293 GCACGCAAAGATGATTTTTAGGC 59.696 43.478 0.00 0.00 0.00 3.93
4911 5535 5.880332 TGGTGGTAATCAGAAAACTCATAGC 59.120 40.000 0.00 0.00 0.00 2.97
4932 5556 0.396556 GCCGGGGGTCAAAATATGGT 60.397 55.000 2.18 0.00 0.00 3.55
4935 5559 0.755327 GCTGCCGGGGGTCAAAATAT 60.755 55.000 2.18 0.00 0.00 1.28
4936 5560 1.379309 GCTGCCGGGGGTCAAAATA 60.379 57.895 2.18 0.00 0.00 1.40
4973 5597 6.286758 AGTGCTACTGTCATCAAGGATATTG 58.713 40.000 0.00 0.00 0.00 1.90
4981 5605 3.951680 TCGGATAGTGCTACTGTCATCAA 59.048 43.478 12.51 0.00 37.99 2.57
4987 5611 3.887352 TCTCTTCGGATAGTGCTACTGT 58.113 45.455 0.00 0.00 0.00 3.55
5033 5657 2.312722 AGCTCAAGCAGTAGCATCTG 57.687 50.000 4.59 4.18 45.49 2.90
5040 5664 3.119814 CGTGTAGAGAAGCTCAAGCAGTA 60.120 47.826 4.59 0.00 45.16 2.74
5041 5665 2.352225 CGTGTAGAGAAGCTCAAGCAGT 60.352 50.000 4.59 0.00 45.16 4.40
5042 5666 2.257894 CGTGTAGAGAAGCTCAAGCAG 58.742 52.381 4.59 0.00 45.16 4.24
5043 5667 1.670087 GCGTGTAGAGAAGCTCAAGCA 60.670 52.381 4.59 0.00 45.16 3.91
5044 5668 0.995728 GCGTGTAGAGAAGCTCAAGC 59.004 55.000 0.00 0.00 42.49 4.01
5045 5669 1.067565 TGGCGTGTAGAGAAGCTCAAG 60.068 52.381 0.00 0.00 32.06 3.02
5046 5670 0.966179 TGGCGTGTAGAGAAGCTCAA 59.034 50.000 0.00 0.00 32.06 3.02
5047 5671 0.966179 TTGGCGTGTAGAGAAGCTCA 59.034 50.000 0.00 0.00 32.06 4.26
5048 5672 1.996191 CTTTGGCGTGTAGAGAAGCTC 59.004 52.381 0.00 0.00 0.00 4.09
5049 5673 1.941668 GCTTTGGCGTGTAGAGAAGCT 60.942 52.381 0.00 0.00 37.21 3.74
5050 5674 0.444260 GCTTTGGCGTGTAGAGAAGC 59.556 55.000 0.00 0.00 33.65 3.86
5051 5675 2.086054 AGCTTTGGCGTGTAGAGAAG 57.914 50.000 0.00 0.00 44.37 2.85
5052 5676 2.224185 TGAAGCTTTGGCGTGTAGAGAA 60.224 45.455 0.00 0.00 44.37 2.87
5053 5677 1.343142 TGAAGCTTTGGCGTGTAGAGA 59.657 47.619 0.00 0.00 44.37 3.10
5054 5678 1.795768 TGAAGCTTTGGCGTGTAGAG 58.204 50.000 0.00 0.00 44.37 2.43
5055 5679 2.143122 CTTGAAGCTTTGGCGTGTAGA 58.857 47.619 0.00 0.00 44.37 2.59
5056 5680 1.197721 CCTTGAAGCTTTGGCGTGTAG 59.802 52.381 0.00 0.00 44.37 2.74
5057 5681 1.234821 CCTTGAAGCTTTGGCGTGTA 58.765 50.000 0.00 0.00 44.37 2.90
5058 5682 1.455383 CCCTTGAAGCTTTGGCGTGT 61.455 55.000 0.00 0.00 44.37 4.49
5059 5683 1.286880 CCCTTGAAGCTTTGGCGTG 59.713 57.895 0.00 0.00 44.37 5.34
5060 5684 0.755327 AACCCTTGAAGCTTTGGCGT 60.755 50.000 0.00 2.06 44.37 5.68
5061 5685 0.318955 CAACCCTTGAAGCTTTGGCG 60.319 55.000 0.00 1.48 44.37 5.69
5062 5686 0.033920 CCAACCCTTGAAGCTTTGGC 59.966 55.000 0.00 0.00 39.06 4.52
5063 5687 1.703411 TCCAACCCTTGAAGCTTTGG 58.297 50.000 13.85 13.85 38.48 3.28
5064 5688 3.555586 CCATTCCAACCCTTGAAGCTTTG 60.556 47.826 0.00 0.00 0.00 2.77
5065 5689 2.634453 CCATTCCAACCCTTGAAGCTTT 59.366 45.455 0.00 0.00 0.00 3.51
5066 5690 2.158325 TCCATTCCAACCCTTGAAGCTT 60.158 45.455 0.00 0.00 0.00 3.74
5067 5691 1.428912 TCCATTCCAACCCTTGAAGCT 59.571 47.619 0.00 0.00 0.00 3.74
5068 5692 1.923356 TCCATTCCAACCCTTGAAGC 58.077 50.000 0.00 0.00 0.00 3.86
5069 5693 3.005791 GTGTTCCATTCCAACCCTTGAAG 59.994 47.826 0.00 0.00 0.00 3.02
5070 5694 2.962421 GTGTTCCATTCCAACCCTTGAA 59.038 45.455 0.00 0.00 0.00 2.69
5071 5695 2.593026 GTGTTCCATTCCAACCCTTGA 58.407 47.619 0.00 0.00 0.00 3.02
5072 5696 1.618343 GGTGTTCCATTCCAACCCTTG 59.382 52.381 0.00 0.00 0.00 3.61
5073 5697 1.219213 TGGTGTTCCATTCCAACCCTT 59.781 47.619 0.00 0.00 39.03 3.95
5074 5698 0.856982 TGGTGTTCCATTCCAACCCT 59.143 50.000 0.00 0.00 39.03 4.34
5075 5699 0.966179 GTGGTGTTCCATTCCAACCC 59.034 55.000 0.00 0.00 46.20 4.11
5076 5700 1.886542 GAGTGGTGTTCCATTCCAACC 59.113 52.381 0.00 0.00 46.20 3.77
5077 5701 2.582052 TGAGTGGTGTTCCATTCCAAC 58.418 47.619 7.17 0.00 45.90 3.77
5078 5702 3.524095 ATGAGTGGTGTTCCATTCCAA 57.476 42.857 7.17 0.00 45.90 3.53
5079 5703 4.227073 TCATATGAGTGGTGTTCCATTCCA 59.773 41.667 0.00 0.00 45.90 3.53
5080 5704 4.780815 TCATATGAGTGGTGTTCCATTCC 58.219 43.478 0.00 0.00 45.90 3.01
5081 5705 6.543465 TGAATCATATGAGTGGTGTTCCATTC 59.457 38.462 10.96 5.49 46.41 2.67
5082 5706 6.425735 TGAATCATATGAGTGGTGTTCCATT 58.574 36.000 10.96 0.00 46.20 3.16
5083 5707 6.005066 TGAATCATATGAGTGGTGTTCCAT 57.995 37.500 10.96 0.00 46.20 3.41
5084 5708 5.434182 TGAATCATATGAGTGGTGTTCCA 57.566 39.130 10.96 0.00 42.05 3.53
5085 5709 6.375455 ACTTTGAATCATATGAGTGGTGTTCC 59.625 38.462 10.96 0.00 0.00 3.62
5086 5710 7.119699 TCACTTTGAATCATATGAGTGGTGTTC 59.880 37.037 10.96 8.75 36.17 3.18
5087 5711 6.942005 TCACTTTGAATCATATGAGTGGTGTT 59.058 34.615 10.96 0.00 36.17 3.32
5088 5712 6.475504 TCACTTTGAATCATATGAGTGGTGT 58.524 36.000 10.96 2.69 36.17 4.16
5089 5713 6.990341 TCACTTTGAATCATATGAGTGGTG 57.010 37.500 10.96 12.86 36.17 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.