Multiple sequence alignment - TraesCS7D01G445100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G445100 chr7D 100.000 2753 0 0 1 2753 566122670 566125422 0.000000e+00 5084.0
1 TraesCS7D01G445100 chr7D 93.033 1177 59 12 951 2123 566133120 566134277 0.000000e+00 1698.0
2 TraesCS7D01G445100 chr7D 92.608 487 33 3 2268 2753 496335080 496334596 0.000000e+00 697.0
3 TraesCS7D01G445100 chr7D 91.020 490 38 6 2266 2753 2920721 2920236 0.000000e+00 656.0
4 TraesCS7D01G445100 chr7D 90.984 488 35 8 2266 2750 533936045 533936526 0.000000e+00 649.0
5 TraesCS7D01G445100 chr7D 87.524 529 41 10 81 593 112008916 112008397 3.050000e-164 588.0
6 TraesCS7D01G445100 chr7D 85.146 377 27 18 587 941 111801530 111801161 2.610000e-95 359.0
7 TraesCS7D01G445100 chr7D 77.186 263 26 16 51 292 529587300 529587549 3.720000e-24 122.0
8 TraesCS7D01G445100 chr7B 92.791 1290 80 9 950 2234 617782899 617784180 0.000000e+00 1855.0
9 TraesCS7D01G445100 chr7B 93.810 210 12 1 950 1159 617787468 617787676 5.720000e-82 315.0
10 TraesCS7D01G445100 chr7B 88.000 225 22 4 1871 2093 617787703 617787924 7.560000e-66 261.0
11 TraesCS7D01G445100 chr7A 91.933 1190 75 11 917 2105 652484000 652485169 0.000000e+00 1646.0
12 TraesCS7D01G445100 chr7A 93.491 1014 63 3 954 1967 652490524 652491534 0.000000e+00 1504.0
13 TraesCS7D01G445100 chr7A 86.759 793 43 21 113 868 652483226 652483993 0.000000e+00 826.0
14 TraesCS7D01G445100 chr7A 91.598 488 37 4 2268 2753 577797688 577797203 0.000000e+00 671.0
15 TraesCS7D01G445100 chr7A 77.441 297 25 21 49 311 491222560 491222848 3.700000e-29 139.0
16 TraesCS7D01G445100 chr7A 95.000 40 1 1 51 90 31591086 31591048 8.230000e-06 62.1
17 TraesCS7D01G445100 chr2B 86.328 885 78 29 82 936 25077849 25076978 0.000000e+00 924.0
18 TraesCS7D01G445100 chr6D 93.634 487 26 5 2266 2750 362867540 362868023 0.000000e+00 723.0
19 TraesCS7D01G445100 chr6D 85.632 348 29 11 587 917 379977108 379976765 2.030000e-91 346.0
20 TraesCS7D01G445100 chr2D 91.803 488 34 6 2266 2750 31753772 31754256 0.000000e+00 675.0
21 TraesCS7D01G445100 chr6A 91.598 488 36 5 2266 2750 15493523 15494008 0.000000e+00 669.0
22 TraesCS7D01G445100 chr4D 91.446 491 36 5 2266 2753 13256423 13255936 0.000000e+00 669.0
23 TraesCS7D01G445100 chr5B 91.020 490 40 4 2266 2753 308798675 308798188 0.000000e+00 658.0
24 TraesCS7D01G445100 chr5B 80.586 273 37 13 673 934 621515625 621515358 2.160000e-46 196.0
25 TraesCS7D01G445100 chr2A 85.831 367 34 10 587 941 261666723 261666363 9.310000e-100 374.0
26 TraesCS7D01G445100 chr2A 77.757 544 51 46 81 571 734500638 734501164 1.260000e-68 270.0
27 TraesCS7D01G445100 chr3A 85.215 372 34 11 587 941 733189444 733189077 2.020000e-96 363.0
28 TraesCS7D01G445100 chr3A 90.909 132 8 3 813 941 680761788 680761658 1.010000e-39 174.0
29 TraesCS7D01G445100 chr3A 77.826 230 26 17 81 301 680762986 680762773 4.820000e-23 119.0
30 TraesCS7D01G445100 chr5A 83.862 378 34 11 587 941 31131430 31131057 4.390000e-88 335.0
31 TraesCS7D01G445100 chr5A 81.529 157 5 10 49 182 31131789 31131634 1.040000e-19 108.0
32 TraesCS7D01G445100 chr3D 77.187 583 62 45 49 571 1481750 1481179 9.710000e-70 274.0
33 TraesCS7D01G445100 chr5D 77.273 594 45 46 49 571 548397643 548398217 1.630000e-67 267.0
34 TraesCS7D01G445100 chr5D 80.592 304 40 12 650 940 500222183 500221886 1.660000e-52 217.0
35 TraesCS7D01G445100 chr1D 76.753 542 56 47 81 571 236630784 236631306 3.540000e-59 239.0
36 TraesCS7D01G445100 chr4A 100.000 31 0 0 51 81 582487547 582487517 1.060000e-04 58.4
37 TraesCS7D01G445100 chr1A 100.000 31 0 0 51 81 497484159 497484189 1.060000e-04 58.4
38 TraesCS7D01G445100 chr1A 100.000 31 0 0 51 81 562782145 562782175 1.060000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G445100 chr7D 566122670 566125422 2752 False 5084.000000 5084 100.000000 1 2753 1 chr7D.!!$F3 2752
1 TraesCS7D01G445100 chr7D 566133120 566134277 1157 False 1698.000000 1698 93.033000 951 2123 1 chr7D.!!$F4 1172
2 TraesCS7D01G445100 chr7D 112008397 112008916 519 True 588.000000 588 87.524000 81 593 1 chr7D.!!$R3 512
3 TraesCS7D01G445100 chr7B 617782899 617787924 5025 False 810.333333 1855 91.533667 950 2234 3 chr7B.!!$F1 1284
4 TraesCS7D01G445100 chr7A 652490524 652491534 1010 False 1504.000000 1504 93.491000 954 1967 1 chr7A.!!$F2 1013
5 TraesCS7D01G445100 chr7A 652483226 652485169 1943 False 1236.000000 1646 89.346000 113 2105 2 chr7A.!!$F3 1992
6 TraesCS7D01G445100 chr2B 25076978 25077849 871 True 924.000000 924 86.328000 82 936 1 chr2B.!!$R1 854
7 TraesCS7D01G445100 chr2A 734500638 734501164 526 False 270.000000 270 77.757000 81 571 1 chr2A.!!$F1 490
8 TraesCS7D01G445100 chr5A 31131057 31131789 732 True 221.500000 335 82.695500 49 941 2 chr5A.!!$R1 892
9 TraesCS7D01G445100 chr3D 1481179 1481750 571 True 274.000000 274 77.187000 49 571 1 chr3D.!!$R1 522
10 TraesCS7D01G445100 chr5D 548397643 548398217 574 False 267.000000 267 77.273000 49 571 1 chr5D.!!$F1 522
11 TraesCS7D01G445100 chr1D 236630784 236631306 522 False 239.000000 239 76.753000 81 571 1 chr1D.!!$F1 490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.034896 CAACAGCGTTCCTACACCCT 59.965 55.0 0.00 0.0 0.00 4.34 F
29 30 0.115745 TTCCTACACCCTCCGGTTCT 59.884 55.0 0.00 0.0 42.04 3.01 F
1074 1446 0.321671 CGATGTTCGGGGCCATCTAT 59.678 55.0 4.39 0.0 36.22 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1074 1446 1.030488 CCACGAAGTAGCCGAGGAGA 61.030 60.0 0.0 0.0 41.61 3.71 R
1644 2025 1.217057 ACCCAATCACCAGGCTCCAT 61.217 55.0 0.0 0.0 0.00 3.41 R
2247 6526 0.031721 AACACCGTCTCTCACCGAAC 59.968 55.0 0.0 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.914379 AGCAACAGCGTTCCTACAC 58.086 52.632 0.00 0.00 0.00 2.90
19 20 0.602905 AGCAACAGCGTTCCTACACC 60.603 55.000 0.00 0.00 0.00 4.16
20 21 1.574702 GCAACAGCGTTCCTACACCC 61.575 60.000 0.00 0.00 0.00 4.61
21 22 0.034896 CAACAGCGTTCCTACACCCT 59.965 55.000 0.00 0.00 0.00 4.34
22 23 0.320697 AACAGCGTTCCTACACCCTC 59.679 55.000 0.00 0.00 0.00 4.30
23 24 1.218316 CAGCGTTCCTACACCCTCC 59.782 63.158 0.00 0.00 0.00 4.30
24 25 2.183555 GCGTTCCTACACCCTCCG 59.816 66.667 0.00 0.00 0.00 4.63
25 26 2.890371 CGTTCCTACACCCTCCGG 59.110 66.667 0.00 0.00 0.00 5.14
26 27 1.980772 CGTTCCTACACCCTCCGGT 60.981 63.158 0.00 0.00 46.31 5.28
27 28 1.538687 CGTTCCTACACCCTCCGGTT 61.539 60.000 0.00 0.00 42.04 4.44
28 29 0.248565 GTTCCTACACCCTCCGGTTC 59.751 60.000 0.00 0.00 42.04 3.62
29 30 0.115745 TTCCTACACCCTCCGGTTCT 59.884 55.000 0.00 0.00 42.04 3.01
30 31 0.613853 TCCTACACCCTCCGGTTCTG 60.614 60.000 0.00 0.00 42.04 3.02
31 32 1.218316 CTACACCCTCCGGTTCTGC 59.782 63.158 0.00 0.00 42.04 4.26
32 33 1.229082 TACACCCTCCGGTTCTGCT 60.229 57.895 0.00 0.00 42.04 4.24
33 34 1.255667 TACACCCTCCGGTTCTGCTC 61.256 60.000 0.00 0.00 42.04 4.26
34 35 2.120718 ACCCTCCGGTTCTGCTCT 59.879 61.111 0.00 0.00 40.58 4.09
35 36 2.286523 ACCCTCCGGTTCTGCTCTG 61.287 63.158 0.00 0.00 40.58 3.35
36 37 2.286523 CCCTCCGGTTCTGCTCTGT 61.287 63.158 0.00 0.00 0.00 3.41
37 38 0.970937 CCCTCCGGTTCTGCTCTGTA 60.971 60.000 0.00 0.00 0.00 2.74
38 39 1.115467 CCTCCGGTTCTGCTCTGTAT 58.885 55.000 0.00 0.00 0.00 2.29
39 40 1.067821 CCTCCGGTTCTGCTCTGTATC 59.932 57.143 0.00 0.00 0.00 2.24
40 41 1.067821 CTCCGGTTCTGCTCTGTATCC 59.932 57.143 0.00 0.00 0.00 2.59
41 42 0.824109 CCGGTTCTGCTCTGTATCCA 59.176 55.000 0.00 0.00 0.00 3.41
42 43 1.414181 CCGGTTCTGCTCTGTATCCAT 59.586 52.381 0.00 0.00 0.00 3.41
43 44 2.628178 CCGGTTCTGCTCTGTATCCATA 59.372 50.000 0.00 0.00 0.00 2.74
44 45 3.069586 CCGGTTCTGCTCTGTATCCATAA 59.930 47.826 0.00 0.00 0.00 1.90
45 46 4.442893 CCGGTTCTGCTCTGTATCCATAAA 60.443 45.833 0.00 0.00 0.00 1.40
46 47 5.116180 CGGTTCTGCTCTGTATCCATAAAA 58.884 41.667 0.00 0.00 0.00 1.52
47 48 5.584649 CGGTTCTGCTCTGTATCCATAAAAA 59.415 40.000 0.00 0.00 0.00 1.94
140 167 2.282462 AGCCCAGCCCAGAAAACG 60.282 61.111 0.00 0.00 0.00 3.60
187 273 3.052620 GCTGGTCTCGAGCGTGCTA 62.053 63.158 7.81 0.00 0.00 3.49
211 297 4.180057 CTGCAACACATCTCTAGTTCTCC 58.820 47.826 0.00 0.00 0.00 3.71
228 314 4.704833 CACGCCTCACCCACCCAG 62.705 72.222 0.00 0.00 0.00 4.45
470 735 4.577246 GAGTAGGCTGGGAGCGCG 62.577 72.222 0.00 0.00 43.62 6.86
519 786 3.907458 TTTTTCTCCCACCCAACGT 57.093 47.368 0.00 0.00 0.00 3.99
598 941 8.451748 GCCCAGTTTAGTTCTAGTTATTTTGAG 58.548 37.037 0.00 0.00 0.00 3.02
648 1000 6.601741 TTGTCATTCAAAACAAAATCCAGC 57.398 33.333 0.00 0.00 32.69 4.85
655 1007 7.489574 TTCAAAACAAAATCCAGCAAATACC 57.510 32.000 0.00 0.00 0.00 2.73
702 1057 7.175990 TGGGAAATTGTAAAGCTTATTTCGACT 59.824 33.333 19.11 0.00 37.69 4.18
735 1090 5.819901 AGGAGATAACAGCTATTTTGCTCAC 59.180 40.000 0.00 0.00 41.98 3.51
744 1099 3.314635 GCTATTTTGCTCACCTGATCCTG 59.685 47.826 0.00 0.00 0.00 3.86
855 1223 6.723298 TGCACAAAAGGATTAGGAGAAAAA 57.277 33.333 0.00 0.00 0.00 1.94
936 1308 4.335416 TCCATTTTCTTTCTGGATTCGCT 58.665 39.130 0.00 0.00 34.17 4.93
941 1313 1.002430 TCTTTCTGGATTCGCTGCTGT 59.998 47.619 0.00 0.00 0.00 4.40
944 1316 2.760634 TCTGGATTCGCTGCTGTTAA 57.239 45.000 0.00 0.00 0.00 2.01
945 1317 3.266510 TCTGGATTCGCTGCTGTTAAT 57.733 42.857 0.00 0.00 0.00 1.40
946 1318 3.198068 TCTGGATTCGCTGCTGTTAATC 58.802 45.455 0.00 9.85 0.00 1.75
947 1319 2.938451 CTGGATTCGCTGCTGTTAATCA 59.062 45.455 16.17 6.95 31.38 2.57
948 1320 3.544684 TGGATTCGCTGCTGTTAATCAT 58.455 40.909 16.17 0.00 31.38 2.45
1074 1446 0.321671 CGATGTTCGGGGCCATCTAT 59.678 55.000 4.39 0.00 36.22 1.98
1311 1683 2.018515 CTCCACTACCTCGTCTTCCTC 58.981 57.143 0.00 0.00 0.00 3.71
1604 1985 1.812093 TGAAATTCTACGCCGCCGG 60.812 57.895 0.00 0.00 39.22 6.13
1605 1986 1.519898 GAAATTCTACGCCGCCGGA 60.520 57.895 7.68 0.00 39.22 5.14
1606 1987 1.488261 GAAATTCTACGCCGCCGGAG 61.488 60.000 7.68 6.22 46.96 4.63
1607 1988 4.587189 ATTCTACGCCGCCGGAGC 62.587 66.667 7.68 6.16 45.18 4.70
1755 2136 3.508762 CAGCAAGAAGGAACAATGATGC 58.491 45.455 0.00 0.00 0.00 3.91
1877 2264 5.119125 GTGAAAACAGATAAGTTTGCCATGC 59.881 40.000 0.00 0.00 40.60 4.06
1878 2265 5.010922 TGAAAACAGATAAGTTTGCCATGCT 59.989 36.000 0.00 0.00 40.60 3.79
1879 2266 4.445452 AACAGATAAGTTTGCCATGCTG 57.555 40.909 0.00 0.00 0.00 4.41
1914 2304 3.378112 TGCCATCCTCTAAAGCGAAAATG 59.622 43.478 0.00 0.00 0.00 2.32
1928 2318 5.460646 AGCGAAAATGGTCATGTTGTAAAG 58.539 37.500 0.00 0.00 0.00 1.85
1929 2319 5.240623 AGCGAAAATGGTCATGTTGTAAAGA 59.759 36.000 0.00 0.00 0.00 2.52
1930 2320 5.918011 GCGAAAATGGTCATGTTGTAAAGAA 59.082 36.000 0.00 0.00 0.00 2.52
1938 2328 6.915300 TGGTCATGTTGTAAAGAAAAATGACG 59.085 34.615 11.42 0.00 42.00 4.35
1996 2386 1.698506 GATCAGGATCTGACGGTCCT 58.301 55.000 5.55 0.00 43.63 3.85
2000 2390 1.067821 CAGGATCTGACGGTCCTAAGC 59.932 57.143 5.55 0.00 42.88 3.09
2010 2400 0.738412 GGTCCTAAGCGCGTTTGCTA 60.738 55.000 18.99 0.00 46.60 3.49
2021 2412 2.285834 CGCGTTTGCTAGGATTGCTAAG 60.286 50.000 0.00 0.00 39.65 2.18
2042 2433 0.176219 ATCCGATGTTCGCCGGTTAA 59.824 50.000 1.90 0.00 45.48 2.01
2045 2436 0.303493 CGATGTTCGCCGGTTAATGG 59.697 55.000 1.90 0.00 31.14 3.16
2105 6384 3.055675 ACGGTTTGATTTACCCGATCTCA 60.056 43.478 3.69 0.00 43.01 3.27
2107 6386 3.877508 GGTTTGATTTACCCGATCTCAGG 59.122 47.826 0.00 0.00 0.00 3.86
2123 6402 6.293735 CGATCTCAGGTAACAGGAGTTAGATC 60.294 46.154 0.00 0.00 40.68 2.75
2124 6403 5.827756 TCTCAGGTAACAGGAGTTAGATCA 58.172 41.667 0.00 0.00 40.68 2.92
2125 6404 5.888724 TCTCAGGTAACAGGAGTTAGATCAG 59.111 44.000 0.00 0.00 40.68 2.90
2126 6405 4.956700 TCAGGTAACAGGAGTTAGATCAGG 59.043 45.833 0.00 0.00 40.68 3.86
2127 6406 4.100189 CAGGTAACAGGAGTTAGATCAGGG 59.900 50.000 0.00 0.00 40.68 4.45
2128 6407 4.016479 AGGTAACAGGAGTTAGATCAGGGA 60.016 45.833 0.00 0.00 40.68 4.20
2129 6408 4.342665 GGTAACAGGAGTTAGATCAGGGAG 59.657 50.000 0.00 0.00 40.68 4.30
2130 6409 3.767309 ACAGGAGTTAGATCAGGGAGT 57.233 47.619 0.00 0.00 0.00 3.85
2131 6410 4.067944 ACAGGAGTTAGATCAGGGAGTT 57.932 45.455 0.00 0.00 0.00 3.01
2132 6411 5.208294 ACAGGAGTTAGATCAGGGAGTTA 57.792 43.478 0.00 0.00 0.00 2.24
2133 6412 5.782925 ACAGGAGTTAGATCAGGGAGTTAT 58.217 41.667 0.00 0.00 0.00 1.89
2134 6413 5.836358 ACAGGAGTTAGATCAGGGAGTTATC 59.164 44.000 0.00 0.00 0.00 1.75
2135 6414 6.074648 CAGGAGTTAGATCAGGGAGTTATCT 58.925 44.000 0.00 0.00 34.44 1.98
2136 6415 6.208599 CAGGAGTTAGATCAGGGAGTTATCTC 59.791 46.154 0.00 0.00 39.76 2.75
2137 6416 6.104094 AGGAGTTAGATCAGGGAGTTATCTCT 59.896 42.308 0.00 0.00 36.35 3.10
2149 6428 8.324191 AGGGAGTTATCTCTGTATTTCATTGA 57.676 34.615 0.97 0.00 33.85 2.57
2150 6429 8.943085 AGGGAGTTATCTCTGTATTTCATTGAT 58.057 33.333 0.97 0.00 33.85 2.57
2151 6430 8.997323 GGGAGTTATCTCTGTATTTCATTGATG 58.003 37.037 0.97 0.00 40.29 3.07
2152 6431 9.553064 GGAGTTATCTCTGTATTTCATTGATGT 57.447 33.333 0.97 0.00 40.29 3.06
2157 6436 7.755582 TCTCTGTATTTCATTGATGTACACG 57.244 36.000 0.00 0.00 0.00 4.49
2158 6437 6.756542 TCTCTGTATTTCATTGATGTACACGG 59.243 38.462 0.00 0.00 0.00 4.94
2159 6438 6.403049 TCTGTATTTCATTGATGTACACGGT 58.597 36.000 0.00 0.00 0.00 4.83
2160 6439 6.312672 TCTGTATTTCATTGATGTACACGGTG 59.687 38.462 6.58 6.58 0.00 4.94
2161 6440 5.935206 TGTATTTCATTGATGTACACGGTGT 59.065 36.000 18.89 18.89 0.00 4.16
2162 6441 4.740741 TTTCATTGATGTACACGGTGTG 57.259 40.909 23.36 4.17 39.75 3.82
2164 6443 3.734463 TCATTGATGTACACGGTGTGTT 58.266 40.909 23.36 7.98 45.08 3.32
2165 6444 4.130857 TCATTGATGTACACGGTGTGTTT 58.869 39.130 23.36 7.62 45.08 2.83
2166 6445 5.298347 TCATTGATGTACACGGTGTGTTTA 58.702 37.500 23.36 7.43 45.08 2.01
2167 6446 5.177881 TCATTGATGTACACGGTGTGTTTAC 59.822 40.000 23.36 13.69 45.08 2.01
2168 6447 4.056092 TGATGTACACGGTGTGTTTACA 57.944 40.909 23.36 18.65 45.08 2.41
2172 6451 4.941657 TGTACACGGTGTGTTTACATACA 58.058 39.130 23.36 13.64 45.08 2.29
2173 6452 4.744137 TGTACACGGTGTGTTTACATACAC 59.256 41.667 23.36 9.87 45.08 2.90
2174 6453 4.062677 ACACGGTGTGTTTACATACACT 57.937 40.909 13.92 0.00 45.08 3.55
2175 6454 4.444536 ACACGGTGTGTTTACATACACTT 58.555 39.130 13.92 0.00 45.08 3.16
2176 6455 4.271533 ACACGGTGTGTTTACATACACTTG 59.728 41.667 13.92 8.49 45.08 3.16
2177 6456 4.508492 CACGGTGTGTTTACATACACTTGA 59.492 41.667 8.54 0.00 46.67 3.02
2178 6457 4.748102 ACGGTGTGTTTACATACACTTGAG 59.252 41.667 8.54 2.26 46.67 3.02
2179 6458 4.986034 CGGTGTGTTTACATACACTTGAGA 59.014 41.667 8.54 0.00 46.67 3.27
2180 6459 5.637810 CGGTGTGTTTACATACACTTGAGAT 59.362 40.000 8.54 0.00 46.67 2.75
2181 6460 6.809689 CGGTGTGTTTACATACACTTGAGATA 59.190 38.462 8.54 0.00 46.67 1.98
2182 6461 7.329962 CGGTGTGTTTACATACACTTGAGATAA 59.670 37.037 8.54 0.00 46.67 1.75
2183 6462 8.656849 GGTGTGTTTACATACACTTGAGATAAG 58.343 37.037 8.54 0.00 46.67 1.73
2184 6463 9.204570 GTGTGTTTACATACACTTGAGATAAGT 57.795 33.333 8.20 0.00 46.67 2.24
2185 6464 9.772973 TGTGTTTACATACACTTGAGATAAGTT 57.227 29.630 8.20 0.00 46.67 2.66
2187 6466 9.431887 TGTTTACATACACTTGAGATAAGTTCC 57.568 33.333 0.00 0.00 0.00 3.62
2188 6467 8.592998 GTTTACATACACTTGAGATAAGTTCCG 58.407 37.037 0.00 0.00 0.00 4.30
2189 6468 6.525578 ACATACACTTGAGATAAGTTCCGA 57.474 37.500 0.00 0.00 0.00 4.55
2190 6469 7.113658 ACATACACTTGAGATAAGTTCCGAT 57.886 36.000 0.00 0.00 0.00 4.18
2191 6470 7.203910 ACATACACTTGAGATAAGTTCCGATC 58.796 38.462 0.00 0.00 0.00 3.69
2192 6471 5.661056 ACACTTGAGATAAGTTCCGATCA 57.339 39.130 0.00 0.00 0.00 2.92
2193 6472 5.655488 ACACTTGAGATAAGTTCCGATCAG 58.345 41.667 0.00 0.00 0.00 2.90
2194 6473 4.505922 CACTTGAGATAAGTTCCGATCAGC 59.494 45.833 0.00 0.00 0.00 4.26
2195 6474 3.355626 TGAGATAAGTTCCGATCAGCG 57.644 47.619 0.00 0.00 40.47 5.18
2204 6483 3.341043 CGATCAGCGGGCGATTGG 61.341 66.667 0.00 0.00 36.03 3.16
2205 6484 2.974698 GATCAGCGGGCGATTGGG 60.975 66.667 0.00 0.00 0.00 4.12
2206 6485 3.460672 GATCAGCGGGCGATTGGGA 62.461 63.158 0.00 0.00 0.00 4.37
2207 6486 3.466791 ATCAGCGGGCGATTGGGAG 62.467 63.158 0.00 0.00 0.00 4.30
2208 6487 4.473520 CAGCGGGCGATTGGGAGT 62.474 66.667 0.00 0.00 0.00 3.85
2209 6488 4.473520 AGCGGGCGATTGGGAGTG 62.474 66.667 0.00 0.00 0.00 3.51
2210 6489 4.778143 GCGGGCGATTGGGAGTGT 62.778 66.667 0.00 0.00 0.00 3.55
2211 6490 2.511600 CGGGCGATTGGGAGTGTC 60.512 66.667 0.00 0.00 0.00 3.67
2212 6491 2.668632 GGGCGATTGGGAGTGTCA 59.331 61.111 0.00 0.00 0.00 3.58
2213 6492 1.450312 GGGCGATTGGGAGTGTCAG 60.450 63.158 0.00 0.00 0.00 3.51
2214 6493 2.109126 GGCGATTGGGAGTGTCAGC 61.109 63.158 0.00 0.00 0.00 4.26
2215 6494 1.375908 GCGATTGGGAGTGTCAGCA 60.376 57.895 0.00 0.00 0.00 4.41
2216 6495 0.745845 GCGATTGGGAGTGTCAGCAT 60.746 55.000 0.00 0.00 0.00 3.79
2217 6496 1.012086 CGATTGGGAGTGTCAGCATG 58.988 55.000 0.00 0.00 37.54 4.06
2218 6497 0.737219 GATTGGGAGTGTCAGCATGC 59.263 55.000 10.51 10.51 34.76 4.06
2219 6498 0.038599 ATTGGGAGTGTCAGCATGCA 59.961 50.000 21.98 0.00 34.76 3.96
2220 6499 0.178995 TTGGGAGTGTCAGCATGCAA 60.179 50.000 21.98 4.32 34.76 4.08
2221 6500 0.607217 TGGGAGTGTCAGCATGCAAG 60.607 55.000 21.98 12.28 34.76 4.01
2222 6501 0.607489 GGGAGTGTCAGCATGCAAGT 60.607 55.000 21.98 5.09 34.76 3.16
2223 6502 0.520404 GGAGTGTCAGCATGCAAGTG 59.480 55.000 21.98 9.94 34.76 3.16
2224 6503 0.109873 GAGTGTCAGCATGCAAGTGC 60.110 55.000 21.98 4.04 45.38 4.40
2235 6514 1.569493 GCAAGTGCACTGTACACGG 59.431 57.895 22.49 5.50 42.94 4.94
2236 6515 1.569493 CAAGTGCACTGTACACGGC 59.431 57.895 22.49 6.98 42.94 5.68
2237 6516 1.145156 AAGTGCACTGTACACGGCA 59.855 52.632 22.49 11.58 42.94 5.69
2238 6517 0.462937 AAGTGCACTGTACACGGCAA 60.463 50.000 22.49 1.56 42.94 4.52
2239 6518 0.250295 AGTGCACTGTACACGGCAAT 60.250 50.000 20.97 13.10 42.94 3.56
2240 6519 0.591170 GTGCACTGTACACGGCAATT 59.409 50.000 15.99 0.00 38.10 2.32
2241 6520 0.590682 TGCACTGTACACGGCAATTG 59.409 50.000 12.88 0.00 32.54 2.32
2242 6521 0.591170 GCACTGTACACGGCAATTGT 59.409 50.000 7.40 0.00 0.00 2.71
2243 6522 1.399727 GCACTGTACACGGCAATTGTC 60.400 52.381 7.40 3.05 0.00 3.18
2244 6523 2.143122 CACTGTACACGGCAATTGTCT 58.857 47.619 8.67 0.00 0.00 3.41
2245 6524 2.096268 CACTGTACACGGCAATTGTCTG 60.096 50.000 8.67 8.05 0.00 3.51
2246 6525 2.224185 ACTGTACACGGCAATTGTCTGA 60.224 45.455 8.67 0.00 0.00 3.27
2247 6526 2.412870 TGTACACGGCAATTGTCTGAG 58.587 47.619 8.67 6.54 0.00 3.35
2248 6527 2.224185 TGTACACGGCAATTGTCTGAGT 60.224 45.455 8.67 11.54 0.00 3.41
2249 6528 1.967319 ACACGGCAATTGTCTGAGTT 58.033 45.000 8.67 0.00 0.00 3.01
2250 6529 1.873591 ACACGGCAATTGTCTGAGTTC 59.126 47.619 8.67 0.00 0.00 3.01
2251 6530 1.136252 CACGGCAATTGTCTGAGTTCG 60.136 52.381 8.67 1.41 0.00 3.95
2252 6531 0.443869 CGGCAATTGTCTGAGTTCGG 59.556 55.000 8.67 0.00 0.00 4.30
2253 6532 1.523758 GGCAATTGTCTGAGTTCGGT 58.476 50.000 7.40 0.00 0.00 4.69
2254 6533 1.197721 GGCAATTGTCTGAGTTCGGTG 59.802 52.381 7.40 0.00 0.00 4.94
2255 6534 2.143122 GCAATTGTCTGAGTTCGGTGA 58.857 47.619 7.40 0.00 0.00 4.02
2256 6535 2.158449 GCAATTGTCTGAGTTCGGTGAG 59.842 50.000 7.40 0.00 0.00 3.51
2257 6536 3.653344 CAATTGTCTGAGTTCGGTGAGA 58.347 45.455 0.00 0.00 0.00 3.27
2258 6537 3.584406 ATTGTCTGAGTTCGGTGAGAG 57.416 47.619 0.00 0.00 0.00 3.20
2259 6538 2.271944 TGTCTGAGTTCGGTGAGAGA 57.728 50.000 0.00 0.00 0.00 3.10
2260 6539 1.880675 TGTCTGAGTTCGGTGAGAGAC 59.119 52.381 0.00 0.00 0.00 3.36
2261 6540 1.135916 GTCTGAGTTCGGTGAGAGACG 60.136 57.143 0.00 0.00 0.00 4.18
2262 6541 0.169230 CTGAGTTCGGTGAGAGACGG 59.831 60.000 0.00 0.00 0.00 4.79
2263 6542 0.536687 TGAGTTCGGTGAGAGACGGT 60.537 55.000 0.00 0.00 0.00 4.83
2264 6543 0.109689 GAGTTCGGTGAGAGACGGTG 60.110 60.000 0.00 0.00 0.00 4.94
2265 6544 0.822532 AGTTCGGTGAGAGACGGTGT 60.823 55.000 0.00 0.00 0.00 4.16
2266 6545 0.031721 GTTCGGTGAGAGACGGTGTT 59.968 55.000 0.00 0.00 0.00 3.32
2267 6546 1.267806 GTTCGGTGAGAGACGGTGTTA 59.732 52.381 0.00 0.00 0.00 2.41
2268 6547 1.162698 TCGGTGAGAGACGGTGTTAG 58.837 55.000 0.00 0.00 0.00 2.34
2269 6548 1.162698 CGGTGAGAGACGGTGTTAGA 58.837 55.000 0.00 0.00 0.00 2.10
2270 6549 1.130749 CGGTGAGAGACGGTGTTAGAG 59.869 57.143 0.00 0.00 0.00 2.43
2271 6550 1.135344 GGTGAGAGACGGTGTTAGAGC 60.135 57.143 0.00 0.00 0.00 4.09
2272 6551 1.540267 GTGAGAGACGGTGTTAGAGCA 59.460 52.381 0.00 0.00 0.00 4.26
2273 6552 2.164624 GTGAGAGACGGTGTTAGAGCAT 59.835 50.000 0.00 0.00 0.00 3.79
2274 6553 2.423892 TGAGAGACGGTGTTAGAGCATC 59.576 50.000 0.00 0.00 0.00 3.91
2294 6573 4.090588 CACCCGCGCCCCTAGAAA 62.091 66.667 0.00 0.00 0.00 2.52
2295 6574 3.324108 ACCCGCGCCCCTAGAAAA 61.324 61.111 0.00 0.00 0.00 2.29
2296 6575 2.513897 CCCGCGCCCCTAGAAAAG 60.514 66.667 0.00 0.00 0.00 2.27
2297 6576 2.513897 CCGCGCCCCTAGAAAAGG 60.514 66.667 0.00 0.00 46.09 3.11
2298 6577 3.202706 CGCGCCCCTAGAAAAGGC 61.203 66.667 0.00 0.00 45.03 4.35
2299 6578 2.829003 GCGCCCCTAGAAAAGGCC 60.829 66.667 0.00 0.00 45.03 5.19
2300 6579 2.998949 CGCCCCTAGAAAAGGCCT 59.001 61.111 0.00 0.00 45.03 5.19
2301 6580 1.303282 CGCCCCTAGAAAAGGCCTT 59.697 57.895 13.78 13.78 45.03 4.35
2302 6581 0.748367 CGCCCCTAGAAAAGGCCTTC 60.748 60.000 20.79 7.53 45.03 3.46
2303 6582 0.395862 GCCCCTAGAAAAGGCCTTCC 60.396 60.000 20.79 13.98 45.03 3.46
2304 6583 0.259065 CCCCTAGAAAAGGCCTTCCC 59.741 60.000 20.79 13.59 45.03 3.97
2305 6584 0.999712 CCCTAGAAAAGGCCTTCCCA 59.000 55.000 20.79 3.62 45.03 4.37
2306 6585 1.064389 CCCTAGAAAAGGCCTTCCCAG 60.064 57.143 20.79 13.22 45.03 4.45
2307 6586 1.916181 CCTAGAAAAGGCCTTCCCAGA 59.084 52.381 20.79 2.61 38.97 3.86
2308 6587 2.356227 CCTAGAAAAGGCCTTCCCAGAC 60.356 54.545 20.79 6.91 38.97 3.51
2309 6588 0.036875 AGAAAAGGCCTTCCCAGACG 59.963 55.000 20.79 0.00 35.39 4.18
2310 6589 0.036306 GAAAAGGCCTTCCCAGACGA 59.964 55.000 20.79 0.00 35.39 4.20
2311 6590 0.698818 AAAAGGCCTTCCCAGACGAT 59.301 50.000 20.79 0.00 35.39 3.73
2312 6591 0.698818 AAAGGCCTTCCCAGACGATT 59.301 50.000 20.79 0.00 35.39 3.34
2313 6592 0.698818 AAGGCCTTCCCAGACGATTT 59.301 50.000 13.78 0.00 35.39 2.17
2314 6593 0.698818 AGGCCTTCCCAGACGATTTT 59.301 50.000 0.00 0.00 35.39 1.82
2315 6594 1.075536 AGGCCTTCCCAGACGATTTTT 59.924 47.619 0.00 0.00 35.39 1.94
2345 6624 2.554272 CGAAAAACGGCCCAGTCG 59.446 61.111 0.00 0.00 38.46 4.18
2346 6625 2.254350 GAAAAACGGCCCAGTCGC 59.746 61.111 0.00 0.00 32.11 5.19
2347 6626 3.588891 GAAAAACGGCCCAGTCGCG 62.589 63.158 0.00 0.00 32.11 5.87
2348 6627 4.922026 AAAACGGCCCAGTCGCGT 62.922 61.111 5.77 0.00 32.11 6.01
2356 6635 4.135153 CCAGTCGCGTCCCAGGAG 62.135 72.222 5.77 0.00 0.00 3.69
2357 6636 4.803426 CAGTCGCGTCCCAGGAGC 62.803 72.222 5.77 0.00 0.00 4.70
2363 6642 3.470888 CGTCCCAGGAGCCCGATT 61.471 66.667 0.00 0.00 0.00 3.34
2364 6643 2.998949 GTCCCAGGAGCCCGATTT 59.001 61.111 0.00 0.00 0.00 2.17
2365 6644 1.303282 GTCCCAGGAGCCCGATTTT 59.697 57.895 0.00 0.00 0.00 1.82
2366 6645 0.748367 GTCCCAGGAGCCCGATTTTC 60.748 60.000 0.00 0.00 0.00 2.29
2367 6646 1.819632 CCCAGGAGCCCGATTTTCG 60.820 63.158 0.00 0.00 40.07 3.46
2368 6647 2.472909 CCAGGAGCCCGATTTTCGC 61.473 63.158 0.00 0.00 38.82 4.70
2369 6648 2.124695 AGGAGCCCGATTTTCGCC 60.125 61.111 0.00 0.00 38.82 5.54
2370 6649 3.573491 GGAGCCCGATTTTCGCCG 61.573 66.667 0.00 0.00 38.82 6.46
2371 6650 3.573491 GAGCCCGATTTTCGCCGG 61.573 66.667 0.00 0.00 44.94 6.13
2375 6654 3.876198 CCGATTTTCGCCGGCCTG 61.876 66.667 23.46 8.15 38.82 4.85
2376 6655 3.876198 CGATTTTCGCCGGCCTGG 61.876 66.667 23.46 7.26 42.50 4.45
2377 6656 2.437716 GATTTTCGCCGGCCTGGA 60.438 61.111 23.46 10.06 42.00 3.86
2378 6657 2.750237 ATTTTCGCCGGCCTGGAC 60.750 61.111 23.46 0.00 42.00 4.02
2387 6666 4.225497 GGCCTGGACCGAAATCAG 57.775 61.111 0.00 0.00 0.00 2.90
2388 6667 2.115291 GGCCTGGACCGAAATCAGC 61.115 63.158 0.00 0.00 0.00 4.26
2389 6668 2.464459 GCCTGGACCGAAATCAGCG 61.464 63.158 0.00 0.00 0.00 5.18
2390 6669 2.464459 CCTGGACCGAAATCAGCGC 61.464 63.158 0.00 0.00 0.00 5.92
2391 6670 2.435938 TGGACCGAAATCAGCGCC 60.436 61.111 2.29 0.00 0.00 6.53
2392 6671 3.202706 GGACCGAAATCAGCGCCC 61.203 66.667 2.29 0.00 0.00 6.13
2393 6672 3.564027 GACCGAAATCAGCGCCCG 61.564 66.667 2.29 0.00 0.00 6.13
2412 6691 4.547367 GGATCCAGGCCGAACCCG 62.547 72.222 6.95 0.00 40.58 5.28
2453 6732 4.572571 TGCCGGGGCGAGTTGTTT 62.573 61.111 2.18 0.00 45.51 2.83
2454 6733 3.292159 GCCGGGGCGAGTTGTTTT 61.292 61.111 2.18 0.00 0.00 2.43
2455 6734 2.642700 CCGGGGCGAGTTGTTTTG 59.357 61.111 0.00 0.00 0.00 2.44
2456 6735 2.642700 CGGGGCGAGTTGTTTTGG 59.357 61.111 0.00 0.00 0.00 3.28
2457 6736 2.338620 GGGGCGAGTTGTTTTGGC 59.661 61.111 0.00 0.00 0.00 4.52
2458 6737 2.050442 GGGCGAGTTGTTTTGGCG 60.050 61.111 0.00 0.00 0.00 5.69
2459 6738 2.729491 GGCGAGTTGTTTTGGCGC 60.729 61.111 0.00 0.00 46.20 6.53
2460 6739 3.091022 GCGAGTTGTTTTGGCGCG 61.091 61.111 0.00 0.00 38.24 6.86
2461 6740 2.629210 CGAGTTGTTTTGGCGCGA 59.371 55.556 12.10 0.00 0.00 5.87
2462 6741 1.010574 CGAGTTGTTTTGGCGCGAA 60.011 52.632 12.10 0.00 0.00 4.70
2463 6742 0.991770 CGAGTTGTTTTGGCGCGAAG 60.992 55.000 12.10 0.00 0.00 3.79
2490 6769 4.803426 GCCCACCGAGTCAGCGAG 62.803 72.222 0.00 0.00 0.00 5.03
2491 6770 3.062466 CCCACCGAGTCAGCGAGA 61.062 66.667 0.00 0.00 0.00 4.04
2513 6792 2.956964 CGCTTCGTCGCCCTCATC 60.957 66.667 0.00 0.00 0.00 2.92
2514 6793 2.956964 GCTTCGTCGCCCTCATCG 60.957 66.667 0.00 0.00 0.00 3.84
2515 6794 2.956964 CTTCGTCGCCCTCATCGC 60.957 66.667 0.00 0.00 0.00 4.58
2516 6795 4.508128 TTCGTCGCCCTCATCGCC 62.508 66.667 0.00 0.00 0.00 5.54
2518 6797 4.933064 CGTCGCCCTCATCGCCTC 62.933 72.222 0.00 0.00 0.00 4.70
2519 6798 4.933064 GTCGCCCTCATCGCCTCG 62.933 72.222 0.00 0.00 0.00 4.63
2522 6801 4.162690 GCCCTCATCGCCTCGGTT 62.163 66.667 0.00 0.00 0.00 4.44
2523 6802 2.107141 CCCTCATCGCCTCGGTTC 59.893 66.667 0.00 0.00 0.00 3.62
2524 6803 2.107141 CCTCATCGCCTCGGTTCC 59.893 66.667 0.00 0.00 0.00 3.62
2525 6804 2.107141 CTCATCGCCTCGGTTCCC 59.893 66.667 0.00 0.00 0.00 3.97
2539 6818 2.515991 TCCCGCGGGAATCAATGC 60.516 61.111 43.93 0.00 42.05 3.56
2540 6819 3.595758 CCCGCGGGAATCAATGCC 61.596 66.667 41.82 0.00 37.50 4.40
2541 6820 2.828095 CCGCGGGAATCAATGCCA 60.828 61.111 20.10 0.00 40.15 4.92
2542 6821 2.413963 CCGCGGGAATCAATGCCAA 61.414 57.895 20.10 0.00 40.15 4.52
2543 6822 1.064621 CGCGGGAATCAATGCCAAG 59.935 57.895 0.00 0.00 40.15 3.61
2544 6823 1.438814 GCGGGAATCAATGCCAAGG 59.561 57.895 0.00 0.00 40.15 3.61
2545 6824 1.322538 GCGGGAATCAATGCCAAGGT 61.323 55.000 0.00 0.00 40.15 3.50
2546 6825 1.185315 CGGGAATCAATGCCAAGGTT 58.815 50.000 0.00 0.00 40.15 3.50
2547 6826 1.135024 CGGGAATCAATGCCAAGGTTG 60.135 52.381 0.00 0.00 40.15 3.77
2548 6827 1.405933 GGGAATCAATGCCAAGGTTGC 60.406 52.381 0.00 0.00 39.85 4.17
2549 6828 1.405933 GGAATCAATGCCAAGGTTGCC 60.406 52.381 0.00 0.00 0.00 4.52
2550 6829 0.247185 AATCAATGCCAAGGTTGCCG 59.753 50.000 0.00 0.00 0.00 5.69
2551 6830 2.229690 ATCAATGCCAAGGTTGCCGC 62.230 55.000 0.00 0.00 0.00 6.53
2552 6831 4.054825 AATGCCAAGGTTGCCGCG 62.055 61.111 0.00 0.00 0.00 6.46
2582 6861 3.625099 GCCAGCCTTGCCATTGAT 58.375 55.556 0.00 0.00 0.00 2.57
2583 6862 1.902556 GCCAGCCTTGCCATTGATT 59.097 52.632 0.00 0.00 0.00 2.57
2584 6863 0.179092 GCCAGCCTTGCCATTGATTC 60.179 55.000 0.00 0.00 0.00 2.52
2585 6864 0.462789 CCAGCCTTGCCATTGATTCC 59.537 55.000 0.00 0.00 0.00 3.01
2586 6865 1.481871 CAGCCTTGCCATTGATTCCT 58.518 50.000 0.00 0.00 0.00 3.36
2587 6866 1.407979 CAGCCTTGCCATTGATTCCTC 59.592 52.381 0.00 0.00 0.00 3.71
2588 6867 1.006281 AGCCTTGCCATTGATTCCTCA 59.994 47.619 0.00 0.00 0.00 3.86
2589 6868 1.135721 GCCTTGCCATTGATTCCTCAC 59.864 52.381 0.00 0.00 0.00 3.51
2590 6869 1.402968 CCTTGCCATTGATTCCTCACG 59.597 52.381 0.00 0.00 0.00 4.35
2591 6870 1.402968 CTTGCCATTGATTCCTCACGG 59.597 52.381 0.00 0.00 0.00 4.94
2592 6871 0.394216 TGCCATTGATTCCTCACGGG 60.394 55.000 0.00 0.00 0.00 5.28
2593 6872 1.728490 GCCATTGATTCCTCACGGGC 61.728 60.000 0.00 0.00 41.19 6.13
2594 6873 1.439353 CCATTGATTCCTCACGGGCG 61.439 60.000 0.00 0.00 34.39 6.13
2595 6874 1.153168 ATTGATTCCTCACGGGCGG 60.153 57.895 0.00 0.00 34.39 6.13
2596 6875 3.969250 TTGATTCCTCACGGGCGGC 62.969 63.158 0.00 0.00 34.39 6.53
2642 6921 4.090588 CCCTCCCGCCACGCTTTA 62.091 66.667 0.00 0.00 0.00 1.85
2643 6922 2.818274 CCTCCCGCCACGCTTTAC 60.818 66.667 0.00 0.00 0.00 2.01
2644 6923 2.047655 CTCCCGCCACGCTTTACA 60.048 61.111 0.00 0.00 0.00 2.41
2645 6924 2.357760 TCCCGCCACGCTTTACAC 60.358 61.111 0.00 0.00 0.00 2.90
2646 6925 2.666862 CCCGCCACGCTTTACACA 60.667 61.111 0.00 0.00 0.00 3.72
2647 6926 2.554272 CCGCCACGCTTTACACAC 59.446 61.111 0.00 0.00 0.00 3.82
2648 6927 2.170036 CGCCACGCTTTACACACG 59.830 61.111 0.00 0.00 0.00 4.49
2649 6928 2.554272 GCCACGCTTTACACACGG 59.446 61.111 0.00 0.00 0.00 4.94
2650 6929 2.961669 GCCACGCTTTACACACGGG 61.962 63.158 0.00 0.00 0.00 5.28
2651 6930 2.554272 CACGCTTTACACACGGGC 59.446 61.111 0.00 0.00 0.00 6.13
2653 6932 4.439472 CGCTTTACACACGGGCGC 62.439 66.667 0.00 0.00 39.42 6.53
2654 6933 4.439472 GCTTTACACACGGGCGCG 62.439 66.667 22.69 22.69 0.00 6.86
2655 6934 3.784412 CTTTACACACGGGCGCGG 61.784 66.667 27.52 17.74 0.00 6.46
2660 6939 4.578898 CACACGGGCGCGGCTATA 62.579 66.667 32.30 0.00 0.00 1.31
2661 6940 3.612681 ACACGGGCGCGGCTATAT 61.613 61.111 32.30 13.18 0.00 0.86
2662 6941 2.270257 ACACGGGCGCGGCTATATA 61.270 57.895 32.30 0.00 0.00 0.86
2663 6942 1.080366 CACGGGCGCGGCTATATAA 60.080 57.895 32.30 0.00 0.00 0.98
2664 6943 1.076533 CACGGGCGCGGCTATATAAG 61.077 60.000 32.30 16.03 0.00 1.73
2703 6982 4.803908 GGCCACACCAGCCCTAGC 62.804 72.222 0.00 0.00 45.16 3.42
2704 6983 4.803908 GCCACACCAGCCCTAGCC 62.804 72.222 0.00 0.00 41.25 3.93
2705 6984 4.473520 CCACACCAGCCCTAGCCG 62.474 72.222 0.00 0.00 41.25 5.52
2710 6989 4.864334 CCAGCCCTAGCCGCCAAG 62.864 72.222 0.00 0.00 41.25 3.61
2714 6993 3.474570 CCCTAGCCGCCAAGCTCT 61.475 66.667 0.00 0.00 43.67 4.09
2715 6994 2.107953 CCTAGCCGCCAAGCTCTC 59.892 66.667 0.00 0.00 43.67 3.20
2716 6995 2.107953 CTAGCCGCCAAGCTCTCC 59.892 66.667 0.00 0.00 43.67 3.71
2717 6996 3.453070 CTAGCCGCCAAGCTCTCCC 62.453 68.421 0.00 0.00 43.67 4.30
2718 6997 3.984186 TAGCCGCCAAGCTCTCCCT 62.984 63.158 0.00 0.00 43.67 4.20
2719 6998 4.847444 GCCGCCAAGCTCTCCCTC 62.847 72.222 0.00 0.00 0.00 4.30
2720 6999 3.080121 CCGCCAAGCTCTCCCTCT 61.080 66.667 0.00 0.00 0.00 3.69
2721 7000 2.498726 CGCCAAGCTCTCCCTCTC 59.501 66.667 0.00 0.00 0.00 3.20
2722 7001 2.907236 GCCAAGCTCTCCCTCTCC 59.093 66.667 0.00 0.00 0.00 3.71
2723 7002 2.741055 GCCAAGCTCTCCCTCTCCC 61.741 68.421 0.00 0.00 0.00 4.30
2724 7003 2.430610 CCAAGCTCTCCCTCTCCCG 61.431 68.421 0.00 0.00 0.00 5.14
2725 7004 1.684049 CAAGCTCTCCCTCTCCCGT 60.684 63.158 0.00 0.00 0.00 5.28
2726 7005 1.684049 AAGCTCTCCCTCTCCCGTG 60.684 63.158 0.00 0.00 0.00 4.94
2727 7006 3.844090 GCTCTCCCTCTCCCGTGC 61.844 72.222 0.00 0.00 0.00 5.34
2728 7007 3.522731 CTCTCCCTCTCCCGTGCG 61.523 72.222 0.00 0.00 0.00 5.34
2750 7029 3.854669 CGCCGAGCCCTCCATCTT 61.855 66.667 0.00 0.00 0.00 2.40
2751 7030 2.110006 GCCGAGCCCTCCATCTTC 59.890 66.667 0.00 0.00 0.00 2.87
2752 7031 2.825264 CCGAGCCCTCCATCTTCC 59.175 66.667 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.602905 GGTGTAGGAACGCTGTTGCT 60.603 55.000 16.51 16.51 36.33 3.91
1 2 1.574702 GGGTGTAGGAACGCTGTTGC 61.575 60.000 5.14 5.14 36.33 4.17
2 3 0.034896 AGGGTGTAGGAACGCTGTTG 59.965 55.000 0.00 0.00 41.37 3.33
3 4 0.320697 GAGGGTGTAGGAACGCTGTT 59.679 55.000 0.00 0.00 42.80 3.16
4 5 1.542187 GGAGGGTGTAGGAACGCTGT 61.542 60.000 0.00 0.00 42.80 4.40
5 6 1.218316 GGAGGGTGTAGGAACGCTG 59.782 63.158 0.00 0.00 42.80 5.18
6 7 2.348888 CGGAGGGTGTAGGAACGCT 61.349 63.158 0.00 0.00 45.16 5.07
7 8 2.183555 CGGAGGGTGTAGGAACGC 59.816 66.667 0.00 0.00 35.27 4.84
20 21 1.067821 GGATACAGAGCAGAACCGGAG 59.932 57.143 9.46 0.00 0.00 4.63
21 22 1.112113 GGATACAGAGCAGAACCGGA 58.888 55.000 9.46 0.00 0.00 5.14
22 23 0.824109 TGGATACAGAGCAGAACCGG 59.176 55.000 0.00 0.00 46.17 5.28
45 46 0.601057 CCCTTGGATTCGCCGTTTTT 59.399 50.000 0.00 0.00 40.66 1.94
46 47 1.248101 CCCCTTGGATTCGCCGTTTT 61.248 55.000 0.00 0.00 40.66 2.43
47 48 1.677633 CCCCTTGGATTCGCCGTTT 60.678 57.895 0.00 0.00 40.66 3.60
104 118 3.443037 GCTGCACTGATGAGTACTAGTG 58.557 50.000 16.10 16.10 42.51 2.74
160 222 0.388134 TCGAGACCAGCGTTTACAGC 60.388 55.000 0.00 0.00 0.00 4.40
187 273 3.580458 AGAACTAGAGATGTGTTGCAGGT 59.420 43.478 0.00 0.00 0.00 4.00
211 297 4.704833 CTGGGTGGGTGAGGCGTG 62.705 72.222 0.00 0.00 0.00 5.34
481 746 3.636153 AATAACCTCTGAACTGGAGCC 57.364 47.619 0.00 0.00 0.00 4.70
505 772 2.112297 GCAACGTTGGGTGGGAGA 59.888 61.111 28.33 0.00 0.00 3.71
510 777 0.953960 GGTAGGAGCAACGTTGGGTG 60.954 60.000 28.33 5.44 0.00 4.61
519 786 4.650972 AAACAATGGTAGGTAGGAGCAA 57.349 40.909 0.00 0.00 0.00 3.91
548 821 3.142174 GGCCAACTATGCTACTGGAATC 58.858 50.000 0.00 0.00 0.00 2.52
648 1000 6.985188 ACTAGTGTAAGCATGTGGTATTTG 57.015 37.500 0.00 0.00 0.00 2.32
655 1007 5.755375 CCCAGATTACTAGTGTAAGCATGTG 59.245 44.000 5.39 0.00 44.70 3.21
735 1090 5.726980 TTTGAACCAAAATCAGGATCAGG 57.273 39.130 0.00 0.00 38.85 3.86
944 1316 7.343057 TCGCTGGAGACCAAGATATAATATGAT 59.657 37.037 0.00 0.00 30.80 2.45
945 1317 6.663523 TCGCTGGAGACCAAGATATAATATGA 59.336 38.462 0.00 0.00 30.80 2.15
946 1318 6.867550 TCGCTGGAGACCAAGATATAATATG 58.132 40.000 0.00 0.00 30.80 1.78
947 1319 6.406400 GCTCGCTGGAGACCAAGATATAATAT 60.406 42.308 0.00 0.00 43.27 1.28
948 1320 5.105716 GCTCGCTGGAGACCAAGATATAATA 60.106 44.000 0.00 0.00 43.27 0.98
1074 1446 1.030488 CCACGAAGTAGCCGAGGAGA 61.030 60.000 0.00 0.00 41.61 3.71
1311 1683 3.316573 GAAGAGCACCTCGTGGGGG 62.317 68.421 8.06 1.27 42.69 5.40
1644 2025 1.217057 ACCCAATCACCAGGCTCCAT 61.217 55.000 0.00 0.00 0.00 3.41
1651 2032 2.593468 ATCGCGGACCCAATCACCAG 62.593 60.000 6.13 0.00 0.00 4.00
1836 2220 7.870826 TGTTTTCACATGAGAATTATGACGTT 58.129 30.769 6.40 0.00 0.00 3.99
1877 2264 3.629398 GGATGGCAAATCTCCTACAACAG 59.371 47.826 0.00 0.00 0.00 3.16
1878 2265 3.266772 AGGATGGCAAATCTCCTACAACA 59.733 43.478 5.58 0.00 37.64 3.33
1879 2266 3.879892 GAGGATGGCAAATCTCCTACAAC 59.120 47.826 7.34 0.00 39.52 3.32
1914 2304 6.362283 CCGTCATTTTTCTTTACAACATGACC 59.638 38.462 0.00 0.00 37.02 4.02
1928 2318 5.665381 TTGGCAAATTTCCGTCATTTTTC 57.335 34.783 0.00 0.00 0.00 2.29
1929 2319 4.024133 GCTTGGCAAATTTCCGTCATTTTT 60.024 37.500 0.00 0.00 0.00 1.94
1930 2320 3.498018 GCTTGGCAAATTTCCGTCATTTT 59.502 39.130 0.00 0.00 0.00 1.82
1938 2328 2.448477 CGCAGCTTGGCAAATTTCC 58.552 52.632 0.00 0.00 0.00 3.13
1996 2386 1.663643 CAATCCTAGCAAACGCGCTTA 59.336 47.619 5.73 0.00 43.56 3.09
2000 2390 1.286501 TAGCAATCCTAGCAAACGCG 58.713 50.000 3.53 3.53 0.00 6.01
2010 2400 4.696479 ACATCGGATTCTTAGCAATCCT 57.304 40.909 15.87 2.66 46.95 3.24
2042 2433 2.059786 CCCAAATCAAGGGCGCCAT 61.060 57.895 30.85 21.35 39.96 4.40
2045 2436 1.329913 AATCCCCAAATCAAGGGCGC 61.330 55.000 0.00 0.00 45.39 6.53
2096 6375 5.172455 TAACTCCTGTTACCTGAGATCGGG 61.172 50.000 6.14 6.14 41.41 5.14
2105 6384 4.016479 TCCCTGATCTAACTCCTGTTACCT 60.016 45.833 0.00 0.00 37.59 3.08
2107 6386 4.957327 ACTCCCTGATCTAACTCCTGTTAC 59.043 45.833 0.00 0.00 37.59 2.50
2123 6402 8.206867 TCAATGAAATACAGAGATAACTCCCTG 58.793 37.037 0.00 0.00 43.53 4.45
2124 6403 8.324191 TCAATGAAATACAGAGATAACTCCCT 57.676 34.615 0.00 0.00 43.53 4.20
2125 6404 8.997323 CATCAATGAAATACAGAGATAACTCCC 58.003 37.037 0.00 0.00 43.53 4.30
2126 6405 9.553064 ACATCAATGAAATACAGAGATAACTCC 57.447 33.333 0.00 0.00 43.53 3.85
2131 6410 9.463443 CGTGTACATCAATGAAATACAGAGATA 57.537 33.333 0.00 0.00 0.00 1.98
2132 6411 7.439356 CCGTGTACATCAATGAAATACAGAGAT 59.561 37.037 0.00 0.00 0.00 2.75
2133 6412 6.756542 CCGTGTACATCAATGAAATACAGAGA 59.243 38.462 0.00 0.00 0.00 3.10
2134 6413 6.535150 ACCGTGTACATCAATGAAATACAGAG 59.465 38.462 0.00 7.25 0.00 3.35
2135 6414 6.312672 CACCGTGTACATCAATGAAATACAGA 59.687 38.462 0.00 0.00 0.00 3.41
2136 6415 6.092122 ACACCGTGTACATCAATGAAATACAG 59.908 38.462 1.18 3.75 0.00 2.74
2137 6416 5.935206 ACACCGTGTACATCAATGAAATACA 59.065 36.000 1.18 6.03 0.00 2.29
2138 6417 6.128391 ACACACCGTGTACATCAATGAAATAC 60.128 38.462 3.25 0.00 45.56 1.89
2139 6418 5.935206 ACACACCGTGTACATCAATGAAATA 59.065 36.000 3.25 0.00 45.56 1.40
2140 6419 4.759693 ACACACCGTGTACATCAATGAAAT 59.240 37.500 3.25 0.00 45.56 2.17
2141 6420 4.130857 ACACACCGTGTACATCAATGAAA 58.869 39.130 3.25 0.00 45.56 2.69
2142 6421 3.734463 ACACACCGTGTACATCAATGAA 58.266 40.909 3.25 0.00 45.56 2.57
2143 6422 3.394674 ACACACCGTGTACATCAATGA 57.605 42.857 3.25 0.00 45.56 2.57
2144 6423 4.481930 AAACACACCGTGTACATCAATG 57.518 40.909 3.25 0.00 46.79 2.82
2145 6424 5.057819 TGTAAACACACCGTGTACATCAAT 58.942 37.500 3.25 0.00 46.79 2.57
2146 6425 4.439968 TGTAAACACACCGTGTACATCAA 58.560 39.130 3.25 0.00 46.79 2.57
2147 6426 4.056092 TGTAAACACACCGTGTACATCA 57.944 40.909 3.25 0.00 46.79 3.07
2151 6430 5.254669 GTGTATGTAAACACACCGTGTAC 57.745 43.478 3.25 0.00 46.79 2.90
2161 6440 9.431887 GGAACTTATCTCAAGTGTATGTAAACA 57.568 33.333 0.00 0.00 0.00 2.83
2162 6441 8.592998 CGGAACTTATCTCAAGTGTATGTAAAC 58.407 37.037 0.00 0.00 0.00 2.01
2163 6442 8.525316 TCGGAACTTATCTCAAGTGTATGTAAA 58.475 33.333 0.00 0.00 0.00 2.01
2164 6443 8.058667 TCGGAACTTATCTCAAGTGTATGTAA 57.941 34.615 0.00 0.00 0.00 2.41
2165 6444 7.634671 TCGGAACTTATCTCAAGTGTATGTA 57.365 36.000 0.00 0.00 0.00 2.29
2166 6445 6.525578 TCGGAACTTATCTCAAGTGTATGT 57.474 37.500 0.00 0.00 0.00 2.29
2167 6446 7.203218 TGATCGGAACTTATCTCAAGTGTATG 58.797 38.462 0.00 0.00 0.00 2.39
2168 6447 7.348080 TGATCGGAACTTATCTCAAGTGTAT 57.652 36.000 0.00 0.00 0.00 2.29
2169 6448 6.680625 GCTGATCGGAACTTATCTCAAGTGTA 60.681 42.308 5.48 0.00 0.00 2.90
2170 6449 5.655488 CTGATCGGAACTTATCTCAAGTGT 58.345 41.667 0.00 0.00 0.00 3.55
2171 6450 4.505922 GCTGATCGGAACTTATCTCAAGTG 59.494 45.833 5.48 0.00 0.00 3.16
2172 6451 4.688021 GCTGATCGGAACTTATCTCAAGT 58.312 43.478 5.48 0.00 0.00 3.16
2173 6452 3.733224 CGCTGATCGGAACTTATCTCAAG 59.267 47.826 5.48 0.00 33.78 3.02
2174 6453 3.706698 CGCTGATCGGAACTTATCTCAA 58.293 45.455 5.48 0.00 33.78 3.02
2175 6454 3.355626 CGCTGATCGGAACTTATCTCA 57.644 47.619 5.48 0.00 33.78 3.27
2187 6466 3.341043 CCAATCGCCCGCTGATCG 61.341 66.667 0.00 0.00 38.08 3.69
2188 6467 2.974698 CCCAATCGCCCGCTGATC 60.975 66.667 0.00 0.00 0.00 2.92
2189 6468 3.466791 CTCCCAATCGCCCGCTGAT 62.467 63.158 0.00 0.00 0.00 2.90
2190 6469 4.161295 CTCCCAATCGCCCGCTGA 62.161 66.667 0.00 0.00 0.00 4.26
2191 6470 4.473520 ACTCCCAATCGCCCGCTG 62.474 66.667 0.00 0.00 0.00 5.18
2192 6471 4.473520 CACTCCCAATCGCCCGCT 62.474 66.667 0.00 0.00 0.00 5.52
2193 6472 4.778143 ACACTCCCAATCGCCCGC 62.778 66.667 0.00 0.00 0.00 6.13
2194 6473 2.511600 GACACTCCCAATCGCCCG 60.512 66.667 0.00 0.00 0.00 6.13
2195 6474 1.450312 CTGACACTCCCAATCGCCC 60.450 63.158 0.00 0.00 0.00 6.13
2196 6475 2.109126 GCTGACACTCCCAATCGCC 61.109 63.158 0.00 0.00 0.00 5.54
2197 6476 0.745845 ATGCTGACACTCCCAATCGC 60.746 55.000 0.00 0.00 0.00 4.58
2198 6477 1.012086 CATGCTGACACTCCCAATCG 58.988 55.000 0.00 0.00 0.00 3.34
2199 6478 0.737219 GCATGCTGACACTCCCAATC 59.263 55.000 11.37 0.00 0.00 2.67
2200 6479 0.038599 TGCATGCTGACACTCCCAAT 59.961 50.000 20.33 0.00 0.00 3.16
2201 6480 0.178995 TTGCATGCTGACACTCCCAA 60.179 50.000 20.33 0.00 0.00 4.12
2202 6481 0.607217 CTTGCATGCTGACACTCCCA 60.607 55.000 20.33 0.00 0.00 4.37
2203 6482 0.607489 ACTTGCATGCTGACACTCCC 60.607 55.000 20.33 0.00 0.00 4.30
2204 6483 0.520404 CACTTGCATGCTGACACTCC 59.480 55.000 20.33 0.00 0.00 3.85
2205 6484 0.109873 GCACTTGCATGCTGACACTC 60.110 55.000 20.33 0.00 42.62 3.51
2206 6485 1.954528 GCACTTGCATGCTGACACT 59.045 52.632 20.33 0.00 42.62 3.55
2207 6486 4.546637 GCACTTGCATGCTGACAC 57.453 55.556 20.33 1.90 42.62 3.67
2217 6496 1.569493 CCGTGTACAGTGCACTTGC 59.431 57.895 18.94 12.74 42.50 4.01
2218 6497 1.157257 TGCCGTGTACAGTGCACTTG 61.157 55.000 18.94 15.15 34.91 3.16
2219 6498 0.462937 TTGCCGTGTACAGTGCACTT 60.463 50.000 18.94 11.49 34.91 3.16
2220 6499 0.250295 ATTGCCGTGTACAGTGCACT 60.250 50.000 15.25 15.25 34.91 4.40
2221 6500 0.591170 AATTGCCGTGTACAGTGCAC 59.409 50.000 16.55 9.40 32.63 4.57
2222 6501 0.590682 CAATTGCCGTGTACAGTGCA 59.409 50.000 13.68 13.68 0.00 4.57
2223 6502 0.591170 ACAATTGCCGTGTACAGTGC 59.409 50.000 5.05 9.13 0.00 4.40
2224 6503 2.096268 CAGACAATTGCCGTGTACAGTG 60.096 50.000 5.05 0.00 0.00 3.66
2225 6504 2.143122 CAGACAATTGCCGTGTACAGT 58.857 47.619 5.05 0.00 0.00 3.55
2226 6505 2.412870 TCAGACAATTGCCGTGTACAG 58.587 47.619 5.05 0.00 0.00 2.74
2227 6506 2.224185 ACTCAGACAATTGCCGTGTACA 60.224 45.455 5.05 0.00 0.00 2.90
2228 6507 2.413837 ACTCAGACAATTGCCGTGTAC 58.586 47.619 5.05 0.00 0.00 2.90
2229 6508 2.831685 ACTCAGACAATTGCCGTGTA 57.168 45.000 5.05 0.00 0.00 2.90
2230 6509 1.873591 GAACTCAGACAATTGCCGTGT 59.126 47.619 5.05 0.00 0.00 4.49
2231 6510 1.136252 CGAACTCAGACAATTGCCGTG 60.136 52.381 5.05 0.51 0.00 4.94
2232 6511 1.148310 CGAACTCAGACAATTGCCGT 58.852 50.000 5.05 0.00 0.00 5.68
2233 6512 0.443869 CCGAACTCAGACAATTGCCG 59.556 55.000 5.05 0.00 0.00 5.69
2234 6513 1.197721 CACCGAACTCAGACAATTGCC 59.802 52.381 5.05 0.00 0.00 4.52
2235 6514 2.143122 TCACCGAACTCAGACAATTGC 58.857 47.619 5.05 0.00 0.00 3.56
2236 6515 3.653344 TCTCACCGAACTCAGACAATTG 58.347 45.455 3.24 3.24 0.00 2.32
2237 6516 3.574396 TCTCTCACCGAACTCAGACAATT 59.426 43.478 0.00 0.00 0.00 2.32
2238 6517 3.057174 GTCTCTCACCGAACTCAGACAAT 60.057 47.826 0.00 0.00 32.22 2.71
2239 6518 2.293677 GTCTCTCACCGAACTCAGACAA 59.706 50.000 0.00 0.00 32.22 3.18
2240 6519 1.880675 GTCTCTCACCGAACTCAGACA 59.119 52.381 0.00 0.00 32.22 3.41
2241 6520 1.135916 CGTCTCTCACCGAACTCAGAC 60.136 57.143 0.00 0.00 0.00 3.51
2242 6521 1.157585 CGTCTCTCACCGAACTCAGA 58.842 55.000 0.00 0.00 0.00 3.27
2243 6522 0.169230 CCGTCTCTCACCGAACTCAG 59.831 60.000 0.00 0.00 0.00 3.35
2244 6523 0.536687 ACCGTCTCTCACCGAACTCA 60.537 55.000 0.00 0.00 0.00 3.41
2245 6524 0.109689 CACCGTCTCTCACCGAACTC 60.110 60.000 0.00 0.00 0.00 3.01
2246 6525 0.822532 ACACCGTCTCTCACCGAACT 60.823 55.000 0.00 0.00 0.00 3.01
2247 6526 0.031721 AACACCGTCTCTCACCGAAC 59.968 55.000 0.00 0.00 0.00 3.95
2248 6527 1.538512 CTAACACCGTCTCTCACCGAA 59.461 52.381 0.00 0.00 0.00 4.30
2249 6528 1.162698 CTAACACCGTCTCTCACCGA 58.837 55.000 0.00 0.00 0.00 4.69
2250 6529 1.130749 CTCTAACACCGTCTCTCACCG 59.869 57.143 0.00 0.00 0.00 4.94
2251 6530 1.135344 GCTCTAACACCGTCTCTCACC 60.135 57.143 0.00 0.00 0.00 4.02
2252 6531 1.540267 TGCTCTAACACCGTCTCTCAC 59.460 52.381 0.00 0.00 0.00 3.51
2253 6532 1.905637 TGCTCTAACACCGTCTCTCA 58.094 50.000 0.00 0.00 0.00 3.27
2254 6533 2.685897 AGATGCTCTAACACCGTCTCTC 59.314 50.000 0.00 0.00 0.00 3.20
2255 6534 2.685897 GAGATGCTCTAACACCGTCTCT 59.314 50.000 0.00 0.00 38.17 3.10
2256 6535 2.223618 GGAGATGCTCTAACACCGTCTC 60.224 54.545 0.00 0.00 39.66 3.36
2257 6536 1.751924 GGAGATGCTCTAACACCGTCT 59.248 52.381 0.00 0.00 0.00 4.18
2258 6537 1.476891 TGGAGATGCTCTAACACCGTC 59.523 52.381 0.00 0.00 0.00 4.79
2259 6538 1.204941 GTGGAGATGCTCTAACACCGT 59.795 52.381 0.00 0.00 31.93 4.83
2260 6539 1.471676 GGTGGAGATGCTCTAACACCG 60.472 57.143 16.36 0.00 41.54 4.94
2261 6540 1.134371 GGGTGGAGATGCTCTAACACC 60.134 57.143 19.77 19.77 45.95 4.16
2262 6541 1.471676 CGGGTGGAGATGCTCTAACAC 60.472 57.143 0.00 9.79 35.19 3.32
2263 6542 0.824109 CGGGTGGAGATGCTCTAACA 59.176 55.000 0.00 0.00 29.99 2.41
2264 6543 0.530870 GCGGGTGGAGATGCTCTAAC 60.531 60.000 0.00 0.00 0.00 2.34
2265 6544 1.823295 GCGGGTGGAGATGCTCTAA 59.177 57.895 0.00 0.00 0.00 2.10
2266 6545 2.490148 CGCGGGTGGAGATGCTCTA 61.490 63.158 0.00 0.00 0.00 2.43
2267 6546 3.842923 CGCGGGTGGAGATGCTCT 61.843 66.667 0.00 0.00 0.00 4.09
2277 6556 3.615509 TTTTCTAGGGGCGCGGGTG 62.616 63.158 8.83 0.00 0.00 4.61
2278 6557 3.324108 TTTTCTAGGGGCGCGGGT 61.324 61.111 8.83 0.00 0.00 5.28
2279 6558 2.513897 CTTTTCTAGGGGCGCGGG 60.514 66.667 8.83 0.00 0.00 6.13
2280 6559 2.513897 CCTTTTCTAGGGGCGCGG 60.514 66.667 8.83 0.00 40.67 6.46
2281 6560 3.202706 GCCTTTTCTAGGGGCGCG 61.203 66.667 0.00 0.00 44.91 6.86
2282 6561 2.829003 GGCCTTTTCTAGGGGCGC 60.829 66.667 0.00 0.00 46.10 6.53
2284 6563 0.395862 GGAAGGCCTTTTCTAGGGGC 60.396 60.000 21.54 2.67 44.91 5.80
2285 6564 0.259065 GGGAAGGCCTTTTCTAGGGG 59.741 60.000 21.54 0.00 44.91 4.79
2286 6565 0.999712 TGGGAAGGCCTTTTCTAGGG 59.000 55.000 21.54 0.00 44.91 3.53
2288 6567 2.678190 CGTCTGGGAAGGCCTTTTCTAG 60.678 54.545 21.54 20.51 0.00 2.43
2289 6568 1.278127 CGTCTGGGAAGGCCTTTTCTA 59.722 52.381 21.54 12.14 0.00 2.10
2290 6569 0.036875 CGTCTGGGAAGGCCTTTTCT 59.963 55.000 21.54 0.00 0.00 2.52
2291 6570 0.036306 TCGTCTGGGAAGGCCTTTTC 59.964 55.000 21.54 15.19 0.00 2.29
2292 6571 0.698818 ATCGTCTGGGAAGGCCTTTT 59.301 50.000 21.54 0.00 0.00 2.27
2293 6572 0.698818 AATCGTCTGGGAAGGCCTTT 59.301 50.000 21.54 2.85 0.00 3.11
2294 6573 0.698818 AAATCGTCTGGGAAGGCCTT 59.301 50.000 20.65 20.65 0.00 4.35
2295 6574 0.698818 AAAATCGTCTGGGAAGGCCT 59.301 50.000 0.00 0.00 0.00 5.19
2296 6575 1.545841 AAAAATCGTCTGGGAAGGCC 58.454 50.000 0.00 0.00 0.00 5.19
2328 6607 2.554272 CGACTGGGCCGTTTTTCG 59.446 61.111 0.00 0.00 39.52 3.46
2329 6608 2.254350 GCGACTGGGCCGTTTTTC 59.746 61.111 0.00 0.00 0.00 2.29
2330 6609 3.656045 CGCGACTGGGCCGTTTTT 61.656 61.111 0.00 0.00 0.00 1.94
2331 6610 4.922026 ACGCGACTGGGCCGTTTT 62.922 61.111 15.93 0.00 0.00 2.43
2339 6618 4.135153 CTCCTGGGACGCGACTGG 62.135 72.222 15.93 15.71 0.00 4.00
2340 6619 4.803426 GCTCCTGGGACGCGACTG 62.803 72.222 15.93 6.62 0.00 3.51
2346 6625 2.536997 AAAATCGGGCTCCTGGGACG 62.537 60.000 0.00 0.00 0.00 4.79
2347 6626 0.748367 GAAAATCGGGCTCCTGGGAC 60.748 60.000 0.00 0.00 0.00 4.46
2348 6627 1.607612 GAAAATCGGGCTCCTGGGA 59.392 57.895 0.00 0.00 0.00 4.37
2349 6628 1.819632 CGAAAATCGGGCTCCTGGG 60.820 63.158 0.00 0.00 36.00 4.45
2350 6629 2.472909 GCGAAAATCGGGCTCCTGG 61.473 63.158 1.64 0.00 40.84 4.45
2351 6630 2.472909 GGCGAAAATCGGGCTCCTG 61.473 63.158 1.64 0.00 40.84 3.86
2352 6631 2.124695 GGCGAAAATCGGGCTCCT 60.125 61.111 1.64 0.00 40.84 3.69
2353 6632 3.573491 CGGCGAAAATCGGGCTCC 61.573 66.667 0.00 0.00 40.84 4.70
2354 6633 3.573491 CCGGCGAAAATCGGGCTC 61.573 66.667 9.30 0.00 42.32 4.70
2359 6638 3.876198 CCAGGCCGGCGAAAATCG 61.876 66.667 22.54 2.78 43.89 3.34
2360 6639 2.437716 TCCAGGCCGGCGAAAATC 60.438 61.111 22.54 4.96 33.14 2.17
2361 6640 2.750237 GTCCAGGCCGGCGAAAAT 60.750 61.111 22.54 0.00 33.14 1.82
2370 6649 2.115291 GCTGATTTCGGTCCAGGCC 61.115 63.158 0.00 0.00 0.00 5.19
2371 6650 2.464459 CGCTGATTTCGGTCCAGGC 61.464 63.158 0.00 0.00 0.00 4.85
2372 6651 2.464459 GCGCTGATTTCGGTCCAGG 61.464 63.158 0.00 0.00 0.00 4.45
2373 6652 2.464459 GGCGCTGATTTCGGTCCAG 61.464 63.158 7.64 0.00 0.00 3.86
2374 6653 2.435938 GGCGCTGATTTCGGTCCA 60.436 61.111 7.64 0.00 0.00 4.02
2375 6654 3.202706 GGGCGCTGATTTCGGTCC 61.203 66.667 7.64 0.00 0.00 4.46
2376 6655 3.564027 CGGGCGCTGATTTCGGTC 61.564 66.667 7.64 0.00 0.00 4.79
2381 6660 4.856801 ATCCGCGGGCGCTGATTT 62.857 61.111 27.83 0.00 41.15 2.17
2395 6674 4.547367 CGGGTTCGGCCTGGATCC 62.547 72.222 4.20 4.20 40.02 3.36
2436 6715 4.572571 AAACAACTCGCCCCGGCA 62.573 61.111 6.52 0.00 42.06 5.69
2437 6716 3.292159 AAAACAACTCGCCCCGGC 61.292 61.111 0.00 0.00 37.85 6.13
2438 6717 2.642700 CAAAACAACTCGCCCCGG 59.357 61.111 0.00 0.00 0.00 5.73
2439 6718 2.642700 CCAAAACAACTCGCCCCG 59.357 61.111 0.00 0.00 0.00 5.73
2440 6719 2.338620 GCCAAAACAACTCGCCCC 59.661 61.111 0.00 0.00 0.00 5.80
2441 6720 2.050442 CGCCAAAACAACTCGCCC 60.050 61.111 0.00 0.00 0.00 6.13
2442 6721 2.729491 GCGCCAAAACAACTCGCC 60.729 61.111 0.00 0.00 39.91 5.54
2443 6722 2.975167 TTCGCGCCAAAACAACTCGC 62.975 55.000 0.00 0.00 42.05 5.03
2444 6723 0.991770 CTTCGCGCCAAAACAACTCG 60.992 55.000 0.00 0.00 0.00 4.18
2445 6724 1.268778 GCTTCGCGCCAAAACAACTC 61.269 55.000 0.00 0.00 0.00 3.01
2446 6725 1.299089 GCTTCGCGCCAAAACAACT 60.299 52.632 0.00 0.00 0.00 3.16
2447 6726 1.299089 AGCTTCGCGCCAAAACAAC 60.299 52.632 0.00 0.00 40.39 3.32
2448 6727 1.299014 CAGCTTCGCGCCAAAACAA 60.299 52.632 0.00 0.00 40.39 2.83
2449 6728 2.331098 CAGCTTCGCGCCAAAACA 59.669 55.556 0.00 0.00 40.39 2.83
2450 6729 3.099574 GCAGCTTCGCGCCAAAAC 61.100 61.111 0.00 0.00 40.39 2.43
2451 6730 4.341502 GGCAGCTTCGCGCCAAAA 62.342 61.111 0.00 0.00 43.59 2.44
2473 6752 4.803426 CTCGCTGACTCGGTGGGC 62.803 72.222 0.00 0.00 0.00 5.36
2474 6753 3.062466 TCTCGCTGACTCGGTGGG 61.062 66.667 0.00 0.00 0.00 4.61
2475 6754 2.179517 GTCTCGCTGACTCGGTGG 59.820 66.667 0.00 0.00 42.21 4.61
2476 6755 2.202362 CGTCTCGCTGACTCGGTG 60.202 66.667 6.78 0.00 43.25 4.94
2477 6756 3.432588 CCGTCTCGCTGACTCGGT 61.433 66.667 6.78 0.00 43.25 4.69
2478 6757 4.180946 CCCGTCTCGCTGACTCGG 62.181 72.222 6.78 0.00 43.25 4.63
2479 6758 4.838486 GCCCGTCTCGCTGACTCG 62.838 72.222 6.78 0.00 43.25 4.18
2480 6759 4.838486 CGCCCGTCTCGCTGACTC 62.838 72.222 6.78 0.00 43.25 3.36
2496 6775 2.956964 GATGAGGGCGACGAAGCG 60.957 66.667 0.00 0.00 38.18 4.68
2497 6776 2.956964 CGATGAGGGCGACGAAGC 60.957 66.667 0.00 0.00 0.00 3.86
2498 6777 2.956964 GCGATGAGGGCGACGAAG 60.957 66.667 0.00 0.00 0.00 3.79
2499 6778 4.508128 GGCGATGAGGGCGACGAA 62.508 66.667 0.00 0.00 0.00 3.85
2501 6780 4.933064 GAGGCGATGAGGGCGACG 62.933 72.222 0.00 0.00 42.78 5.12
2502 6781 4.933064 CGAGGCGATGAGGGCGAC 62.933 72.222 0.00 0.00 37.59 5.19
2505 6784 4.162690 AACCGAGGCGATGAGGGC 62.163 66.667 0.00 0.00 0.00 5.19
2506 6785 2.107141 GAACCGAGGCGATGAGGG 59.893 66.667 0.00 0.00 0.00 4.30
2507 6786 2.107141 GGAACCGAGGCGATGAGG 59.893 66.667 0.00 0.00 0.00 3.86
2508 6787 2.107141 GGGAACCGAGGCGATGAG 59.893 66.667 0.00 0.00 40.86 2.90
2522 6801 2.515991 GCATTGATTCCCGCGGGA 60.516 61.111 42.66 42.66 43.52 5.14
2523 6802 3.595758 GGCATTGATTCCCGCGGG 61.596 66.667 39.13 39.13 0.00 6.13
2524 6803 2.340453 CTTGGCATTGATTCCCGCGG 62.340 60.000 21.04 21.04 0.00 6.46
2525 6804 1.064621 CTTGGCATTGATTCCCGCG 59.935 57.895 0.00 0.00 0.00 6.46
2526 6805 1.322538 ACCTTGGCATTGATTCCCGC 61.323 55.000 0.00 0.00 0.00 6.13
2527 6806 1.135024 CAACCTTGGCATTGATTCCCG 60.135 52.381 0.00 0.00 0.00 5.14
2528 6807 1.405933 GCAACCTTGGCATTGATTCCC 60.406 52.381 3.58 0.00 0.00 3.97
2529 6808 2.014335 GCAACCTTGGCATTGATTCC 57.986 50.000 3.58 0.00 0.00 3.01
2566 6845 0.462789 GGAATCAATGGCAAGGCTGG 59.537 55.000 0.00 0.00 0.00 4.85
2567 6846 1.407979 GAGGAATCAATGGCAAGGCTG 59.592 52.381 0.00 0.00 0.00 4.85
2568 6847 1.006281 TGAGGAATCAATGGCAAGGCT 59.994 47.619 0.00 0.00 0.00 4.58
2569 6848 1.135721 GTGAGGAATCAATGGCAAGGC 59.864 52.381 0.00 0.00 0.00 4.35
2570 6849 1.402968 CGTGAGGAATCAATGGCAAGG 59.597 52.381 0.00 0.00 0.00 3.61
2571 6850 2.838386 CGTGAGGAATCAATGGCAAG 57.162 50.000 0.00 0.00 0.00 4.01
2625 6904 4.090588 TAAAGCGTGGCGGGAGGG 62.091 66.667 0.00 0.00 0.00 4.30
2626 6905 2.818274 GTAAAGCGTGGCGGGAGG 60.818 66.667 0.00 0.00 0.00 4.30
2627 6906 2.047655 TGTAAAGCGTGGCGGGAG 60.048 61.111 0.00 0.00 0.00 4.30
2628 6907 2.357760 GTGTAAAGCGTGGCGGGA 60.358 61.111 0.00 0.00 0.00 5.14
2629 6908 2.666862 TGTGTAAAGCGTGGCGGG 60.667 61.111 0.00 0.00 0.00 6.13
2630 6909 2.554272 GTGTGTAAAGCGTGGCGG 59.446 61.111 0.00 0.00 0.00 6.13
2631 6910 2.170036 CGTGTGTAAAGCGTGGCG 59.830 61.111 0.00 0.00 0.00 5.69
2632 6911 2.554272 CCGTGTGTAAAGCGTGGC 59.446 61.111 0.00 0.00 0.00 5.01
2633 6912 2.961669 GCCCGTGTGTAAAGCGTGG 61.962 63.158 0.00 0.00 0.00 4.94
2634 6913 2.554272 GCCCGTGTGTAAAGCGTG 59.446 61.111 0.00 0.00 0.00 5.34
2635 6914 3.039588 CGCCCGTGTGTAAAGCGT 61.040 61.111 0.00 0.00 41.78 5.07
2637 6916 4.439472 CGCGCCCGTGTGTAAAGC 62.439 66.667 0.00 0.00 0.00 3.51
2638 6917 3.784412 CCGCGCCCGTGTGTAAAG 61.784 66.667 0.00 0.00 0.00 1.85
2643 6922 2.480853 TATATAGCCGCGCCCGTGTG 62.481 60.000 0.00 0.00 0.00 3.82
2644 6923 1.808531 TTATATAGCCGCGCCCGTGT 61.809 55.000 0.00 0.00 0.00 4.49
2645 6924 1.076533 CTTATATAGCCGCGCCCGTG 61.077 60.000 0.00 0.00 0.00 4.94
2646 6925 1.214589 CTTATATAGCCGCGCCCGT 59.785 57.895 0.00 0.00 0.00 5.28
2647 6926 2.165301 GCTTATATAGCCGCGCCCG 61.165 63.158 0.00 0.00 44.48 6.13
2648 6927 3.795638 GCTTATATAGCCGCGCCC 58.204 61.111 0.00 0.00 44.48 6.13
2687 6966 4.803908 GGCTAGGGCTGGTGTGGC 62.804 72.222 0.00 0.00 38.73 5.01
2688 6967 4.473520 CGGCTAGGGCTGGTGTGG 62.474 72.222 0.00 0.00 40.90 4.17
2693 6972 4.864334 CTTGGCGGCTAGGGCTGG 62.864 72.222 11.43 0.00 44.48 4.85
2697 6976 3.453070 GAGAGCTTGGCGGCTAGGG 62.453 68.421 20.88 4.85 43.20 3.53
2698 6977 2.107953 GAGAGCTTGGCGGCTAGG 59.892 66.667 20.88 7.23 43.20 3.02
2699 6978 2.107953 GGAGAGCTTGGCGGCTAG 59.892 66.667 15.85 15.85 43.20 3.42
2700 6979 3.470888 GGGAGAGCTTGGCGGCTA 61.471 66.667 11.43 0.46 43.20 3.93
2702 6981 4.847444 GAGGGAGAGCTTGGCGGC 62.847 72.222 0.00 0.00 0.00 6.53
2703 6982 3.080121 AGAGGGAGAGCTTGGCGG 61.080 66.667 0.00 0.00 0.00 6.13
2704 6983 2.498726 GAGAGGGAGAGCTTGGCG 59.501 66.667 0.00 0.00 0.00 5.69
2705 6984 2.741055 GGGAGAGGGAGAGCTTGGC 61.741 68.421 0.00 0.00 0.00 4.52
2706 6985 2.430610 CGGGAGAGGGAGAGCTTGG 61.431 68.421 0.00 0.00 0.00 3.61
2707 6986 1.684049 ACGGGAGAGGGAGAGCTTG 60.684 63.158 0.00 0.00 0.00 4.01
2708 6987 1.684049 CACGGGAGAGGGAGAGCTT 60.684 63.158 0.00 0.00 0.00 3.74
2709 6988 2.043450 CACGGGAGAGGGAGAGCT 60.043 66.667 0.00 0.00 0.00 4.09
2710 6989 3.844090 GCACGGGAGAGGGAGAGC 61.844 72.222 0.00 0.00 0.00 4.09
2711 6990 3.522731 CGCACGGGAGAGGGAGAG 61.523 72.222 0.00 0.00 35.49 3.20
2733 7012 3.798954 GAAGATGGAGGGCTCGGCG 62.799 68.421 0.00 0.00 0.00 6.46
2734 7013 2.110006 GAAGATGGAGGGCTCGGC 59.890 66.667 0.00 0.00 0.00 5.54
2735 7014 2.825264 GGAAGATGGAGGGCTCGG 59.175 66.667 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.