Multiple sequence alignment - TraesCS7D01G444400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G444400 chr7D 100.000 4436 0 0 1 4436 565616389 565620824 0.000000e+00 8192.0
1 TraesCS7D01G444400 chr7D 86.059 2654 311 30 774 3412 566037261 566039870 0.000000e+00 2796.0
2 TraesCS7D01G444400 chr7D 83.454 2478 371 23 980 3430 566013947 566016412 0.000000e+00 2268.0
3 TraesCS7D01G444400 chr7D 81.722 2451 412 21 997 3441 566252971 566255391 0.000000e+00 2012.0
4 TraesCS7D01G444400 chr7D 96.744 645 13 2 3604 4248 62678447 62677811 0.000000e+00 1068.0
5 TraesCS7D01G444400 chr7D 88.535 314 23 7 180 481 566036642 566036954 7.010000e-98 368.0
6 TraesCS7D01G444400 chr7D 87.500 312 30 6 180 483 566094338 566094028 7.060000e-93 351.0
7 TraesCS7D01G444400 chr7D 80.124 161 25 7 10 169 117780903 117781057 3.630000e-21 113.0
8 TraesCS7D01G444400 chr7B 93.436 2590 157 1 1016 3605 616836259 616838835 0.000000e+00 3829.0
9 TraesCS7D01G444400 chr7B 83.172 2478 381 20 980 3430 617557973 617555505 0.000000e+00 2233.0
10 TraesCS7D01G444400 chr7B 81.808 2600 431 24 869 3457 616750035 616747467 0.000000e+00 2143.0
11 TraesCS7D01G444400 chr7B 85.685 1935 249 20 1492 3412 617578218 617580138 0.000000e+00 2013.0
12 TraesCS7D01G444400 chr7B 86.032 315 32 8 180 483 617570846 617571159 1.190000e-85 327.0
13 TraesCS7D01G444400 chr7B 93.299 194 12 1 180 372 617780816 617781009 7.260000e-73 285.0
14 TraesCS7D01G444400 chr7B 79.878 164 26 6 28 186 104298331 104298492 3.630000e-21 113.0
15 TraesCS7D01G444400 chr7A 87.632 3307 336 37 180 3457 652356097 652359359 0.000000e+00 3773.0
16 TraesCS7D01G444400 chr7A 84.494 2670 353 34 774 3412 652337753 652340392 0.000000e+00 2580.0
17 TraesCS7D01G444400 chr7A 83.891 2539 383 18 1074 3605 652175092 652177611 0.000000e+00 2399.0
18 TraesCS7D01G444400 chr7A 81.760 2500 376 49 1001 3475 652195194 652197638 0.000000e+00 2017.0
19 TraesCS7D01G444400 chr7A 83.798 2117 314 20 1417 3518 652163852 652165954 0.000000e+00 1982.0
20 TraesCS7D01G444400 chr7A 86.218 312 31 8 180 483 652308226 652308533 1.190000e-85 327.0
21 TraesCS7D01G444400 chr7A 86.813 91 7 3 4260 4350 40351412 40351497 3.650000e-16 97.1
22 TraesCS7D01G444400 chr5D 97.678 646 13 1 3600 4245 300141085 300140442 0.000000e+00 1109.0
23 TraesCS7D01G444400 chr5D 96.562 640 11 3 3603 4242 355206437 355207065 0.000000e+00 1050.0
24 TraesCS7D01G444400 chr6D 97.063 647 11 2 3600 4246 8683716 8684354 0.000000e+00 1083.0
25 TraesCS7D01G444400 chr6D 96.944 589 9 3 3654 4242 403802406 403801827 0.000000e+00 979.0
26 TraesCS7D01G444400 chr2D 96.894 644 12 2 3602 4245 108868965 108869600 0.000000e+00 1072.0
27 TraesCS7D01G444400 chr2D 96.406 640 15 2 3604 4243 44815228 44814597 0.000000e+00 1048.0
28 TraesCS7D01G444400 chr5A 93.294 671 28 9 3597 4251 475655255 475654586 0.000000e+00 974.0
29 TraesCS7D01G444400 chr5A 92.148 675 23 13 3602 4246 313297553 313298227 0.000000e+00 926.0
30 TraesCS7D01G444400 chr1D 93.252 652 29 6 3605 4241 247473999 247473348 0.000000e+00 946.0
31 TraesCS7D01G444400 chr5B 83.217 143 21 3 28 169 677386304 677386444 1.300000e-25 128.0
32 TraesCS7D01G444400 chr5B 79.747 158 27 5 14 169 498081365 498081519 4.690000e-20 110.0
33 TraesCS7D01G444400 chr6B 81.879 149 22 5 22 167 679549676 679549822 2.170000e-23 121.0
34 TraesCS7D01G444400 chr6B 81.119 143 23 4 28 169 73428506 73428645 1.300000e-20 111.0
35 TraesCS7D01G444400 chr4B 81.818 143 23 3 28 169 67561038 67560898 2.800000e-22 117.0
36 TraesCS7D01G444400 chr3D 81.690 142 21 4 28 166 606746484 606746623 3.630000e-21 113.0
37 TraesCS7D01G444400 chr3A 79.618 157 27 5 14 167 586424140 586424294 1.690000e-19 108.0
38 TraesCS7D01G444400 chr4A 82.407 108 13 4 4255 4359 646903189 646903293 6.110000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G444400 chr7D 565616389 565620824 4435 False 8192 8192 100.000 1 4436 1 chr7D.!!$F2 4435
1 TraesCS7D01G444400 chr7D 566013947 566016412 2465 False 2268 2268 83.454 980 3430 1 chr7D.!!$F3 2450
2 TraesCS7D01G444400 chr7D 566252971 566255391 2420 False 2012 2012 81.722 997 3441 1 chr7D.!!$F4 2444
3 TraesCS7D01G444400 chr7D 566036642 566039870 3228 False 1582 2796 87.297 180 3412 2 chr7D.!!$F5 3232
4 TraesCS7D01G444400 chr7D 62677811 62678447 636 True 1068 1068 96.744 3604 4248 1 chr7D.!!$R1 644
5 TraesCS7D01G444400 chr7B 616836259 616838835 2576 False 3829 3829 93.436 1016 3605 1 chr7B.!!$F2 2589
6 TraesCS7D01G444400 chr7B 617555505 617557973 2468 True 2233 2233 83.172 980 3430 1 chr7B.!!$R2 2450
7 TraesCS7D01G444400 chr7B 616747467 616750035 2568 True 2143 2143 81.808 869 3457 1 chr7B.!!$R1 2588
8 TraesCS7D01G444400 chr7B 617578218 617580138 1920 False 2013 2013 85.685 1492 3412 1 chr7B.!!$F4 1920
9 TraesCS7D01G444400 chr7A 652356097 652359359 3262 False 3773 3773 87.632 180 3457 1 chr7A.!!$F7 3277
10 TraesCS7D01G444400 chr7A 652337753 652340392 2639 False 2580 2580 84.494 774 3412 1 chr7A.!!$F6 2638
11 TraesCS7D01G444400 chr7A 652175092 652177611 2519 False 2399 2399 83.891 1074 3605 1 chr7A.!!$F3 2531
12 TraesCS7D01G444400 chr7A 652195194 652197638 2444 False 2017 2017 81.760 1001 3475 1 chr7A.!!$F4 2474
13 TraesCS7D01G444400 chr7A 652163852 652165954 2102 False 1982 1982 83.798 1417 3518 1 chr7A.!!$F2 2101
14 TraesCS7D01G444400 chr5D 300140442 300141085 643 True 1109 1109 97.678 3600 4245 1 chr5D.!!$R1 645
15 TraesCS7D01G444400 chr5D 355206437 355207065 628 False 1050 1050 96.562 3603 4242 1 chr5D.!!$F1 639
16 TraesCS7D01G444400 chr6D 8683716 8684354 638 False 1083 1083 97.063 3600 4246 1 chr6D.!!$F1 646
17 TraesCS7D01G444400 chr6D 403801827 403802406 579 True 979 979 96.944 3654 4242 1 chr6D.!!$R1 588
18 TraesCS7D01G444400 chr2D 108868965 108869600 635 False 1072 1072 96.894 3602 4245 1 chr2D.!!$F1 643
19 TraesCS7D01G444400 chr2D 44814597 44815228 631 True 1048 1048 96.406 3604 4243 1 chr2D.!!$R1 639
20 TraesCS7D01G444400 chr5A 475654586 475655255 669 True 974 974 93.294 3597 4251 1 chr5A.!!$R1 654
21 TraesCS7D01G444400 chr5A 313297553 313298227 674 False 926 926 92.148 3602 4246 1 chr5A.!!$F1 644
22 TraesCS7D01G444400 chr1D 247473348 247473999 651 True 946 946 93.252 3605 4241 1 chr1D.!!$R1 636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 812 0.109458 TGACGTGGAGATTCGAACGG 60.109 55.0 0.00 0.0 40.25 4.44 F
966 1098 0.698818 ACCCCCTGAGAATTCACCAC 59.301 55.0 8.44 0.0 0.00 4.16 F
2317 2513 0.036010 AGGATTGCAAGACCTCCGTG 60.036 55.0 18.41 0.0 32.87 4.94 F
2644 2861 0.321996 GAAGCTGGAAAGTCTCGGGT 59.678 55.0 0.00 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 2513 0.246635 TTCTTCCTGTCTACGCTGCC 59.753 55.0 0.0 0.0 0.00 4.85 R
2421 2623 0.404040 TCCTCCGGGCAAGAACAATT 59.596 50.0 0.0 0.0 0.00 2.32 R
3168 3399 0.606604 ACGAATCACTACACCCGCTT 59.393 50.0 0.0 0.0 0.00 4.68 R
3576 3815 1.348064 TTCTTCCTGTCACCGATGGT 58.652 50.0 0.0 0.0 35.62 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.522454 TCATTTATTTTTAATTTCTTTTGCGCG 57.478 25.926 0.00 0.00 0.00 6.86
40 41 9.522454 CATTTATTTTTAATTTCTTTTGCGCGA 57.478 25.926 12.10 0.00 0.00 5.87
42 43 9.916397 TTTATTTTTAATTTCTTTTGCGCGAAA 57.084 22.222 21.23 21.23 34.08 3.46
43 44 9.916397 TTATTTTTAATTTCTTTTGCGCGAAAA 57.084 22.222 22.58 10.17 33.37 2.29
44 45 7.637785 TTTTTAATTTCTTTTGCGCGAAAAC 57.362 28.000 22.58 0.00 33.37 2.43
45 46 6.576551 TTTAATTTCTTTTGCGCGAAAACT 57.423 29.167 22.58 10.36 33.37 2.66
46 47 6.576551 TTAATTTCTTTTGCGCGAAAACTT 57.423 29.167 22.58 14.95 33.37 2.66
47 48 5.463499 AATTTCTTTTGCGCGAAAACTTT 57.537 30.435 22.58 11.57 33.37 2.66
48 49 4.493074 TTTCTTTTGCGCGAAAACTTTC 57.507 36.364 22.58 0.00 30.13 2.62
49 50 3.138205 TCTTTTGCGCGAAAACTTTCA 57.862 38.095 22.58 0.00 37.01 2.69
50 51 3.502920 TCTTTTGCGCGAAAACTTTCAA 58.497 36.364 22.58 0.00 37.01 2.69
51 52 4.109050 TCTTTTGCGCGAAAACTTTCAAT 58.891 34.783 22.58 0.00 37.01 2.57
52 53 4.206200 TCTTTTGCGCGAAAACTTTCAATC 59.794 37.500 22.58 0.00 37.01 2.67
53 54 3.347958 TTGCGCGAAAACTTTCAATCT 57.652 38.095 12.10 0.00 37.01 2.40
54 55 4.475763 TTGCGCGAAAACTTTCAATCTA 57.524 36.364 12.10 0.00 37.01 1.98
55 56 4.678509 TGCGCGAAAACTTTCAATCTAT 57.321 36.364 12.10 0.00 37.01 1.98
56 57 5.041951 TGCGCGAAAACTTTCAATCTATT 57.958 34.783 12.10 0.00 37.01 1.73
57 58 5.457140 TGCGCGAAAACTTTCAATCTATTT 58.543 33.333 12.10 0.00 37.01 1.40
58 59 6.604012 TGCGCGAAAACTTTCAATCTATTTA 58.396 32.000 12.10 0.00 37.01 1.40
59 60 7.247728 TGCGCGAAAACTTTCAATCTATTTAT 58.752 30.769 12.10 0.00 37.01 1.40
60 61 7.428183 TGCGCGAAAACTTTCAATCTATTTATC 59.572 33.333 12.10 0.00 37.01 1.75
61 62 7.640240 GCGCGAAAACTTTCAATCTATTTATCT 59.360 33.333 12.10 0.00 37.01 1.98
62 63 9.490663 CGCGAAAACTTTCAATCTATTTATCTT 57.509 29.630 0.00 0.00 37.01 2.40
85 86 9.863845 TCTTCAATCATAGTTGTATAACGAACA 57.136 29.630 0.00 0.00 41.71 3.18
88 89 9.810545 TCAATCATAGTTGTATAACGAACATCA 57.189 29.630 0.00 0.00 41.71 3.07
120 121 8.539770 ACATAATTACATCGAGATTCATGGAC 57.460 34.615 0.00 0.00 0.00 4.02
121 122 7.604164 ACATAATTACATCGAGATTCATGGACC 59.396 37.037 0.00 0.00 0.00 4.46
122 123 5.551305 ATTACATCGAGATTCATGGACCA 57.449 39.130 0.00 0.00 0.00 4.02
123 124 3.185246 ACATCGAGATTCATGGACCAC 57.815 47.619 0.00 0.00 0.00 4.16
124 125 2.130395 CATCGAGATTCATGGACCACG 58.870 52.381 0.00 0.00 0.00 4.94
125 126 1.182667 TCGAGATTCATGGACCACGT 58.817 50.000 0.00 0.00 0.00 4.49
126 127 1.134367 TCGAGATTCATGGACCACGTC 59.866 52.381 0.00 0.00 0.00 4.34
134 135 3.993535 GGACCACGTCCGTCTACT 58.006 61.111 11.11 0.00 43.14 2.57
135 136 3.159298 GGACCACGTCCGTCTACTA 57.841 57.895 11.11 0.00 43.14 1.82
136 137 0.729690 GGACCACGTCCGTCTACTAC 59.270 60.000 11.11 0.00 43.14 2.73
137 138 1.442769 GACCACGTCCGTCTACTACA 58.557 55.000 5.27 0.00 0.00 2.74
138 139 1.806542 GACCACGTCCGTCTACTACAA 59.193 52.381 5.27 0.00 0.00 2.41
139 140 1.808945 ACCACGTCCGTCTACTACAAG 59.191 52.381 0.00 0.00 0.00 3.16
140 141 1.467035 CCACGTCCGTCTACTACAAGC 60.467 57.143 0.00 0.00 0.00 4.01
141 142 1.198408 CACGTCCGTCTACTACAAGCA 59.802 52.381 0.00 0.00 0.00 3.91
142 143 1.198637 ACGTCCGTCTACTACAAGCAC 59.801 52.381 0.00 0.00 0.00 4.40
143 144 1.467035 CGTCCGTCTACTACAAGCACC 60.467 57.143 0.00 0.00 0.00 5.01
144 145 0.806868 TCCGTCTACTACAAGCACCG 59.193 55.000 0.00 0.00 0.00 4.94
145 146 0.806868 CCGTCTACTACAAGCACCGA 59.193 55.000 0.00 0.00 0.00 4.69
146 147 1.200716 CCGTCTACTACAAGCACCGAA 59.799 52.381 0.00 0.00 0.00 4.30
147 148 2.516923 CGTCTACTACAAGCACCGAAG 58.483 52.381 0.00 0.00 0.00 3.79
148 149 2.095364 CGTCTACTACAAGCACCGAAGT 60.095 50.000 0.00 0.00 0.00 3.01
158 159 2.657237 ACCGAAGTGAGGCGAAGG 59.343 61.111 0.00 0.00 0.00 3.46
159 160 2.125512 CCGAAGTGAGGCGAAGGG 60.126 66.667 0.00 0.00 0.00 3.95
160 161 2.125512 CGAAGTGAGGCGAAGGGG 60.126 66.667 0.00 0.00 0.00 4.79
161 162 2.436824 GAAGTGAGGCGAAGGGGC 60.437 66.667 0.00 0.00 42.69 5.80
250 252 5.420409 ACTTGTTTCTCACGTCTTTCTTCT 58.580 37.500 0.00 0.00 0.00 2.85
251 253 5.292101 ACTTGTTTCTCACGTCTTTCTTCTG 59.708 40.000 0.00 0.00 0.00 3.02
252 254 4.755411 TGTTTCTCACGTCTTTCTTCTGT 58.245 39.130 0.00 0.00 0.00 3.41
373 382 5.181690 TGCACCTCATGAACAGTAAAAAC 57.818 39.130 0.00 0.00 0.00 2.43
441 459 5.463499 TGAATGTCGTACATATGTGCAAC 57.537 39.130 21.64 15.17 37.97 4.17
448 466 3.000078 CGTACATATGTGCAACTTCCGTC 60.000 47.826 21.64 0.00 38.04 4.79
583 695 6.951530 CGTGATTTCATCATCAAAATTTGCAC 59.048 34.615 0.00 0.00 42.04 4.57
586 698 3.910648 TCATCATCAAAATTTGCACGCA 58.089 36.364 0.00 0.00 0.00 5.24
698 812 0.109458 TGACGTGGAGATTCGAACGG 60.109 55.000 0.00 0.00 40.25 4.44
727 841 3.064931 GCCCGTTAGTCCTTGTATATGC 58.935 50.000 0.00 0.00 0.00 3.14
754 868 0.738762 CATGGTGGACTCGCAGTCTG 60.739 60.000 13.59 0.00 44.46 3.51
764 878 2.980233 GCAGTCTGGCGGCAAACT 60.980 61.111 12.86 12.86 38.20 2.66
765 879 2.949106 CAGTCTGGCGGCAAACTG 59.051 61.111 28.06 28.06 33.81 3.16
804 919 3.313526 CGGACTAATTCAAAGCCCATCAG 59.686 47.826 0.00 0.00 0.00 2.90
880 997 3.646554 CGGGATCATCACGCATGG 58.353 61.111 0.00 0.00 36.07 3.66
944 1067 1.393539 CACCTGCCTGTAAATTCGACG 59.606 52.381 0.00 0.00 0.00 5.12
966 1098 0.698818 ACCCCCTGAGAATTCACCAC 59.301 55.000 8.44 0.00 0.00 4.16
967 1099 0.995024 CCCCCTGAGAATTCACCACT 59.005 55.000 8.44 0.00 0.00 4.00
968 1100 1.065126 CCCCCTGAGAATTCACCACTC 60.065 57.143 8.44 0.00 0.00 3.51
970 1102 2.616510 CCCCTGAGAATTCACCACTCAC 60.617 54.545 8.44 0.00 36.04 3.51
971 1103 2.616510 CCCTGAGAATTCACCACTCACC 60.617 54.545 8.44 0.00 36.04 4.02
972 1104 2.038952 CCTGAGAATTCACCACTCACCA 59.961 50.000 8.44 0.00 36.04 4.17
973 1105 3.332919 CTGAGAATTCACCACTCACCAG 58.667 50.000 8.44 0.00 36.04 4.00
974 1106 2.079925 GAGAATTCACCACTCACCAGC 58.920 52.381 8.44 0.00 0.00 4.85
975 1107 1.421268 AGAATTCACCACTCACCAGCA 59.579 47.619 8.44 0.00 0.00 4.41
976 1108 2.158623 AGAATTCACCACTCACCAGCAA 60.159 45.455 8.44 0.00 0.00 3.91
977 1109 2.592102 ATTCACCACTCACCAGCAAT 57.408 45.000 0.00 0.00 0.00 3.56
1386 1540 1.172180 CCTTGTCGCCAGGCTCAAAA 61.172 55.000 10.54 0.00 0.00 2.44
1723 1890 5.390613 CGCCGAAAAACTTCATCTACAAAT 58.609 37.500 0.00 0.00 0.00 2.32
1812 1979 1.212751 CCACGTGCTCGATCTCACA 59.787 57.895 16.04 0.00 40.62 3.58
1984 2167 1.901948 TTCGCTCCGGTGTCAGAGT 60.902 57.895 0.00 0.00 32.47 3.24
2100 2283 2.948720 GCCAGACGTGAAGCTCCCT 61.949 63.158 0.00 0.00 0.00 4.20
2317 2513 0.036010 AGGATTGCAAGACCTCCGTG 60.036 55.000 18.41 0.00 32.87 4.94
2318 2514 1.026718 GGATTGCAAGACCTCCGTGG 61.027 60.000 15.40 0.00 42.93 4.94
2319 2515 1.648467 GATTGCAAGACCTCCGTGGC 61.648 60.000 4.94 0.00 40.22 5.01
2421 2623 1.493446 TCGGTCATACTAGCCTGGAGA 59.507 52.381 0.00 0.00 0.00 3.71
2644 2861 0.321996 GAAGCTGGAAAGTCTCGGGT 59.678 55.000 0.00 0.00 0.00 5.28
2738 2962 1.982073 CTCGGGTTTTGCTCATCGGC 61.982 60.000 0.00 0.00 0.00 5.54
2874 3098 1.233369 GAGAGGGCTGGCCTACCTA 59.767 63.158 24.03 0.00 34.02 3.08
3168 3399 3.706373 GAGGTGGAGGCGGCAAGA 61.706 66.667 13.08 0.00 0.00 3.02
3228 3462 2.494870 GGCTGCAGGAAAGATTGTTGAT 59.505 45.455 17.12 0.00 0.00 2.57
3234 3468 4.088634 CAGGAAAGATTGTTGATGGGGAA 58.911 43.478 0.00 0.00 0.00 3.97
3330 3564 2.662596 TGGTGCATCCAGGACGAC 59.337 61.111 0.00 0.00 41.93 4.34
3372 3606 4.435436 CAGGTCGTGCAGGCGCTA 62.435 66.667 7.64 0.00 39.64 4.26
3492 3730 9.719279 GAATCTTCTCATGAGTGAATCAATTTC 57.281 33.333 21.92 14.91 42.53 2.17
3507 3745 9.897744 TGAATCAATTTCACAAGAGTACAATTC 57.102 29.630 0.00 0.00 39.44 2.17
3976 4215 4.096003 CAGCCCTGGTGGTACGGG 62.096 72.222 0.00 0.00 41.06 5.28
4060 4354 1.070786 GAGGAAACAGACGTGGGCA 59.929 57.895 0.00 0.00 0.00 5.36
4180 4474 1.822581 GACTCAAACCAAACACACGC 58.177 50.000 0.00 0.00 0.00 5.34
4248 4542 5.052481 ACGAAACAAACACCTCCTTAGTAC 58.948 41.667 0.00 0.00 0.00 2.73
4250 4544 5.756833 CGAAACAAACACCTCCTTAGTACTT 59.243 40.000 0.00 0.00 0.00 2.24
4251 4545 6.073927 CGAAACAAACACCTCCTTAGTACTTC 60.074 42.308 0.00 0.00 0.00 3.01
4252 4546 5.224821 ACAAACACCTCCTTAGTACTTCC 57.775 43.478 0.00 0.00 0.00 3.46
4253 4547 4.906060 ACAAACACCTCCTTAGTACTTCCT 59.094 41.667 0.00 0.00 0.00 3.36
4254 4548 5.011840 ACAAACACCTCCTTAGTACTTCCTC 59.988 44.000 0.00 0.00 0.00 3.71
4255 4549 3.710724 ACACCTCCTTAGTACTTCCTCC 58.289 50.000 0.00 0.00 0.00 4.30
4256 4550 2.688958 CACCTCCTTAGTACTTCCTCCG 59.311 54.545 0.00 0.00 0.00 4.63
4257 4551 2.311243 ACCTCCTTAGTACTTCCTCCGT 59.689 50.000 0.00 0.00 0.00 4.69
4258 4552 2.950975 CCTCCTTAGTACTTCCTCCGTC 59.049 54.545 0.00 0.00 0.00 4.79
4259 4553 3.371810 CCTCCTTAGTACTTCCTCCGTCT 60.372 52.174 0.00 0.00 0.00 4.18
4260 4554 4.271661 CTCCTTAGTACTTCCTCCGTCTT 58.728 47.826 0.00 0.00 0.00 3.01
4261 4555 4.670765 TCCTTAGTACTTCCTCCGTCTTT 58.329 43.478 0.00 0.00 0.00 2.52
4262 4556 5.819991 TCCTTAGTACTTCCTCCGTCTTTA 58.180 41.667 0.00 0.00 0.00 1.85
4263 4557 6.430007 TCCTTAGTACTTCCTCCGTCTTTAT 58.570 40.000 0.00 0.00 0.00 1.40
4264 4558 7.577303 TCCTTAGTACTTCCTCCGTCTTTATA 58.423 38.462 0.00 0.00 0.00 0.98
4265 4559 7.500559 TCCTTAGTACTTCCTCCGTCTTTATAC 59.499 40.741 0.00 0.00 0.00 1.47
4266 4560 7.501892 CCTTAGTACTTCCTCCGTCTTTATACT 59.498 40.741 0.00 0.00 0.00 2.12
4267 4561 6.940831 AGTACTTCCTCCGTCTTTATACTC 57.059 41.667 0.00 0.00 0.00 2.59
4268 4562 5.827267 AGTACTTCCTCCGTCTTTATACTCC 59.173 44.000 0.00 0.00 0.00 3.85
4269 4563 3.631227 ACTTCCTCCGTCTTTATACTCCG 59.369 47.826 0.00 0.00 0.00 4.63
4270 4564 1.952296 TCCTCCGTCTTTATACTCCGC 59.048 52.381 0.00 0.00 0.00 5.54
4271 4565 1.679680 CCTCCGTCTTTATACTCCGCA 59.320 52.381 0.00 0.00 0.00 5.69
4272 4566 2.296471 CCTCCGTCTTTATACTCCGCAT 59.704 50.000 0.00 0.00 0.00 4.73
4273 4567 3.504906 CCTCCGTCTTTATACTCCGCATA 59.495 47.826 0.00 0.00 0.00 3.14
4274 4568 4.474113 CTCCGTCTTTATACTCCGCATAC 58.526 47.826 0.00 0.00 0.00 2.39
4275 4569 4.139786 TCCGTCTTTATACTCCGCATACT 58.860 43.478 0.00 0.00 0.00 2.12
4276 4570 5.308014 TCCGTCTTTATACTCCGCATACTA 58.692 41.667 0.00 0.00 0.00 1.82
4277 4571 5.410746 TCCGTCTTTATACTCCGCATACTAG 59.589 44.000 0.00 0.00 0.00 2.57
4278 4572 5.180868 CCGTCTTTATACTCCGCATACTAGT 59.819 44.000 0.00 0.00 0.00 2.57
4279 4573 6.293845 CCGTCTTTATACTCCGCATACTAGTT 60.294 42.308 0.00 0.00 0.00 2.24
4280 4574 7.137426 CGTCTTTATACTCCGCATACTAGTTT 58.863 38.462 0.00 0.00 0.00 2.66
4281 4575 7.646922 CGTCTTTATACTCCGCATACTAGTTTT 59.353 37.037 0.00 0.00 0.00 2.43
4282 4576 8.753175 GTCTTTATACTCCGCATACTAGTTTTG 58.247 37.037 0.00 0.53 0.00 2.44
4283 4577 8.689061 TCTTTATACTCCGCATACTAGTTTTGA 58.311 33.333 0.00 0.00 0.00 2.69
4284 4578 9.309516 CTTTATACTCCGCATACTAGTTTTGAA 57.690 33.333 0.00 0.00 0.00 2.69
4285 4579 8.638685 TTATACTCCGCATACTAGTTTTGAAC 57.361 34.615 0.00 0.00 0.00 3.18
4286 4580 5.148651 ACTCCGCATACTAGTTTTGAACT 57.851 39.130 0.00 0.00 45.40 3.01
4287 4581 6.276832 ACTCCGCATACTAGTTTTGAACTA 57.723 37.500 0.00 1.11 42.81 2.24
4288 4582 6.694447 ACTCCGCATACTAGTTTTGAACTAA 58.306 36.000 0.00 0.00 42.99 2.24
4289 4583 6.812160 ACTCCGCATACTAGTTTTGAACTAAG 59.188 38.462 0.00 0.00 42.99 2.18
4290 4584 6.694447 TCCGCATACTAGTTTTGAACTAAGT 58.306 36.000 0.00 5.53 42.99 2.24
4291 4585 6.810182 TCCGCATACTAGTTTTGAACTAAGTC 59.190 38.462 0.00 0.00 42.99 3.01
4292 4586 6.588756 CCGCATACTAGTTTTGAACTAAGTCA 59.411 38.462 0.00 0.00 42.99 3.41
4293 4587 7.117236 CCGCATACTAGTTTTGAACTAAGTCAA 59.883 37.037 0.00 0.00 42.99 3.18
4294 4588 8.492748 CGCATACTAGTTTTGAACTAAGTCAAA 58.507 33.333 0.00 0.00 42.99 2.69
4295 4589 9.595357 GCATACTAGTTTTGAACTAAGTCAAAC 57.405 33.333 0.00 1.61 44.96 2.93
4347 4641 9.768662 ATCAAAAACAATCTAAGCTTTCACAAT 57.231 25.926 3.20 0.00 0.00 2.71
4352 4646 9.683069 AAACAATCTAAGCTTTCACAATAACAG 57.317 29.630 3.20 0.00 0.00 3.16
4353 4647 8.621532 ACAATCTAAGCTTTCACAATAACAGA 57.378 30.769 3.20 0.00 0.00 3.41
4354 4648 9.236006 ACAATCTAAGCTTTCACAATAACAGAT 57.764 29.630 3.20 0.00 0.00 2.90
4384 4678 9.577222 TTGAATCATGATTCTAATGGCTATTGA 57.423 29.630 36.15 17.31 45.55 2.57
4385 4679 9.749340 TGAATCATGATTCTAATGGCTATTGAT 57.251 29.630 36.15 7.07 45.55 2.57
4389 4683 8.799367 TCATGATTCTAATGGCTATTGATTTGG 58.201 33.333 5.42 0.00 0.00 3.28
4390 4684 8.582437 CATGATTCTAATGGCTATTGATTTGGT 58.418 33.333 5.42 0.00 0.00 3.67
4391 4685 9.812347 ATGATTCTAATGGCTATTGATTTGGTA 57.188 29.630 5.42 0.00 0.00 3.25
4392 4686 9.812347 TGATTCTAATGGCTATTGATTTGGTAT 57.188 29.630 5.42 0.00 0.00 2.73
4395 4689 8.995027 TCTAATGGCTATTGATTTGGTATTGT 57.005 30.769 5.42 0.00 0.00 2.71
4396 4690 9.420118 TCTAATGGCTATTGATTTGGTATTGTT 57.580 29.630 5.42 0.00 0.00 2.83
4399 4693 9.816354 AATGGCTATTGATTTGGTATTGTTAAC 57.184 29.630 0.00 0.00 0.00 2.01
4400 4694 7.476667 TGGCTATTGATTTGGTATTGTTAACG 58.523 34.615 0.26 0.00 0.00 3.18
4401 4695 7.121463 TGGCTATTGATTTGGTATTGTTAACGT 59.879 33.333 0.26 0.00 0.00 3.99
4402 4696 7.971722 GGCTATTGATTTGGTATTGTTAACGTT 59.028 33.333 5.88 5.88 0.00 3.99
4403 4697 9.991388 GCTATTGATTTGGTATTGTTAACGTTA 57.009 29.630 3.29 3.29 0.00 3.18
4434 4728 8.655651 TTTTTGTATGGACTTGGTCAAAATTC 57.344 30.769 0.00 0.00 35.66 2.17
4435 4729 6.968263 TTGTATGGACTTGGTCAAAATTCA 57.032 33.333 0.14 0.00 33.68 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.522454 CGCGCAAAAGAAATTAAAAATAAATGA 57.478 25.926 8.75 0.00 0.00 2.57
14 15 9.522454 TCGCGCAAAAGAAATTAAAAATAAATG 57.478 25.926 8.75 0.00 0.00 2.32
16 17 9.916397 TTTCGCGCAAAAGAAATTAAAAATAAA 57.084 22.222 8.75 0.00 32.15 1.40
17 18 9.916397 TTTTCGCGCAAAAGAAATTAAAAATAA 57.084 22.222 8.75 0.00 36.41 1.40
18 19 9.359318 GTTTTCGCGCAAAAGAAATTAAAAATA 57.641 25.926 8.75 0.00 36.41 1.40
19 20 8.119845 AGTTTTCGCGCAAAAGAAATTAAAAAT 58.880 25.926 8.75 0.00 36.41 1.82
20 21 7.457060 AGTTTTCGCGCAAAAGAAATTAAAAA 58.543 26.923 8.75 0.00 36.41 1.94
21 22 6.994992 AGTTTTCGCGCAAAAGAAATTAAAA 58.005 28.000 8.75 0.00 36.41 1.52
22 23 6.576551 AGTTTTCGCGCAAAAGAAATTAAA 57.423 29.167 8.75 0.00 36.41 1.52
23 24 6.576551 AAGTTTTCGCGCAAAAGAAATTAA 57.423 29.167 8.75 0.00 36.41 1.40
24 25 6.253727 TGAAAGTTTTCGCGCAAAAGAAATTA 59.746 30.769 8.75 0.00 40.01 1.40
25 26 5.062809 TGAAAGTTTTCGCGCAAAAGAAATT 59.937 32.000 8.75 0.53 40.01 1.82
26 27 4.564769 TGAAAGTTTTCGCGCAAAAGAAAT 59.435 33.333 8.75 0.00 40.01 2.17
27 28 3.921021 TGAAAGTTTTCGCGCAAAAGAAA 59.079 34.783 8.75 6.12 40.01 2.52
28 29 3.502920 TGAAAGTTTTCGCGCAAAAGAA 58.497 36.364 8.75 0.00 40.01 2.52
29 30 3.138205 TGAAAGTTTTCGCGCAAAAGA 57.862 38.095 8.75 0.00 40.01 2.52
30 31 3.898005 TTGAAAGTTTTCGCGCAAAAG 57.102 38.095 8.75 0.00 40.01 2.27
31 32 4.109050 AGATTGAAAGTTTTCGCGCAAAA 58.891 34.783 8.75 10.75 40.01 2.44
32 33 3.701241 AGATTGAAAGTTTTCGCGCAAA 58.299 36.364 8.75 0.00 40.01 3.68
33 34 3.347958 AGATTGAAAGTTTTCGCGCAA 57.652 38.095 8.75 0.00 40.01 4.85
34 35 4.678509 ATAGATTGAAAGTTTTCGCGCA 57.321 36.364 8.75 0.00 40.01 6.09
35 36 5.992489 AAATAGATTGAAAGTTTTCGCGC 57.008 34.783 0.00 0.00 40.01 6.86
36 37 9.490663 AAGATAAATAGATTGAAAGTTTTCGCG 57.509 29.630 0.00 0.00 40.01 5.87
59 60 9.863845 TGTTCGTTATACAACTATGATTGAAGA 57.136 29.630 0.00 0.00 33.57 2.87
62 63 9.810545 TGATGTTCGTTATACAACTATGATTGA 57.189 29.630 0.00 0.00 33.57 2.57
94 95 8.993121 GTCCATGAATCTCGATGTAATTATGTT 58.007 33.333 0.00 0.00 0.00 2.71
95 96 7.604164 GGTCCATGAATCTCGATGTAATTATGT 59.396 37.037 0.00 0.00 0.00 2.29
96 97 7.603784 TGGTCCATGAATCTCGATGTAATTATG 59.396 37.037 0.00 0.00 0.00 1.90
97 98 7.604164 GTGGTCCATGAATCTCGATGTAATTAT 59.396 37.037 0.00 0.00 0.00 1.28
98 99 6.929049 GTGGTCCATGAATCTCGATGTAATTA 59.071 38.462 0.00 0.00 0.00 1.40
99 100 5.760253 GTGGTCCATGAATCTCGATGTAATT 59.240 40.000 0.00 0.00 0.00 1.40
100 101 5.300752 GTGGTCCATGAATCTCGATGTAAT 58.699 41.667 0.00 0.00 0.00 1.89
101 102 4.693283 GTGGTCCATGAATCTCGATGTAA 58.307 43.478 0.00 0.00 0.00 2.41
102 103 3.243401 CGTGGTCCATGAATCTCGATGTA 60.243 47.826 4.96 0.00 0.00 2.29
103 104 2.481969 CGTGGTCCATGAATCTCGATGT 60.482 50.000 4.96 0.00 0.00 3.06
104 105 2.130395 CGTGGTCCATGAATCTCGATG 58.870 52.381 4.96 0.00 0.00 3.84
105 106 1.757118 ACGTGGTCCATGAATCTCGAT 59.243 47.619 18.36 0.00 0.00 3.59
106 107 1.134367 GACGTGGTCCATGAATCTCGA 59.866 52.381 18.36 0.00 0.00 4.04
107 108 1.560923 GACGTGGTCCATGAATCTCG 58.439 55.000 18.36 6.17 0.00 4.04
118 119 1.442769 TGTAGTAGACGGACGTGGTC 58.557 55.000 0.53 0.00 34.62 4.02
119 120 1.808945 CTTGTAGTAGACGGACGTGGT 59.191 52.381 0.53 0.00 0.00 4.16
120 121 1.467035 GCTTGTAGTAGACGGACGTGG 60.467 57.143 0.53 0.00 0.00 4.94
121 122 1.198408 TGCTTGTAGTAGACGGACGTG 59.802 52.381 0.53 0.00 0.00 4.49
122 123 1.198637 GTGCTTGTAGTAGACGGACGT 59.801 52.381 0.00 0.00 0.00 4.34
123 124 1.467035 GGTGCTTGTAGTAGACGGACG 60.467 57.143 0.00 0.00 0.00 4.79
124 125 1.467035 CGGTGCTTGTAGTAGACGGAC 60.467 57.143 0.00 0.00 0.00 4.79
125 126 0.806868 CGGTGCTTGTAGTAGACGGA 59.193 55.000 0.00 0.00 0.00 4.69
126 127 0.806868 TCGGTGCTTGTAGTAGACGG 59.193 55.000 0.00 0.00 0.00 4.79
127 128 2.095364 ACTTCGGTGCTTGTAGTAGACG 60.095 50.000 0.00 0.00 0.00 4.18
128 129 3.057736 TCACTTCGGTGCTTGTAGTAGAC 60.058 47.826 0.00 0.00 44.94 2.59
129 130 3.151554 TCACTTCGGTGCTTGTAGTAGA 58.848 45.455 0.00 0.00 44.94 2.59
130 131 3.502920 CTCACTTCGGTGCTTGTAGTAG 58.497 50.000 0.00 0.00 44.94 2.57
131 132 2.230508 CCTCACTTCGGTGCTTGTAGTA 59.769 50.000 0.00 0.00 44.94 1.82
132 133 1.000955 CCTCACTTCGGTGCTTGTAGT 59.999 52.381 0.00 0.00 44.94 2.73
133 134 1.714794 CCTCACTTCGGTGCTTGTAG 58.285 55.000 0.00 0.00 44.94 2.74
134 135 0.320421 GCCTCACTTCGGTGCTTGTA 60.320 55.000 0.00 0.00 44.94 2.41
135 136 1.598130 GCCTCACTTCGGTGCTTGT 60.598 57.895 0.00 0.00 44.94 3.16
136 137 2.671177 CGCCTCACTTCGGTGCTTG 61.671 63.158 0.00 0.00 44.94 4.01
137 138 2.357517 CGCCTCACTTCGGTGCTT 60.358 61.111 0.00 0.00 44.94 3.91
138 139 2.771763 CTTCGCCTCACTTCGGTGCT 62.772 60.000 0.00 0.00 44.94 4.40
139 140 2.357034 TTCGCCTCACTTCGGTGC 60.357 61.111 0.00 0.00 44.94 5.01
140 141 1.738099 CCTTCGCCTCACTTCGGTG 60.738 63.158 0.00 0.00 46.54 4.94
141 142 2.657237 CCTTCGCCTCACTTCGGT 59.343 61.111 0.00 0.00 0.00 4.69
142 143 2.125512 CCCTTCGCCTCACTTCGG 60.126 66.667 0.00 0.00 0.00 4.30
143 144 2.125512 CCCCTTCGCCTCACTTCG 60.126 66.667 0.00 0.00 0.00 3.79
144 145 2.436824 GCCCCTTCGCCTCACTTC 60.437 66.667 0.00 0.00 0.00 3.01
145 146 4.394712 CGCCCCTTCGCCTCACTT 62.395 66.667 0.00 0.00 0.00 3.16
173 174 0.179056 ATACATTTGGCGAGGGACGG 60.179 55.000 0.00 0.00 42.83 4.79
174 175 1.663695 AATACATTTGGCGAGGGACG 58.336 50.000 0.00 0.00 45.66 4.79
175 176 4.173256 CAAAAATACATTTGGCGAGGGAC 58.827 43.478 0.00 0.00 36.79 4.46
176 177 4.448537 CAAAAATACATTTGGCGAGGGA 57.551 40.909 0.00 0.00 36.79 4.20
206 207 2.452600 TTCTGTGGCAAAGGGTCTTT 57.547 45.000 4.51 0.00 0.00 2.52
215 217 4.219507 TGAGAAACAAGTTTTCTGTGGCAA 59.780 37.500 4.02 0.00 38.73 4.52
250 252 2.702592 AGGTTTCACGGAGACAAACA 57.297 45.000 0.00 0.00 35.42 2.83
251 253 3.203716 AGAAGGTTTCACGGAGACAAAC 58.796 45.455 0.00 0.00 33.87 2.93
252 254 3.118555 TGAGAAGGTTTCACGGAGACAAA 60.119 43.478 0.00 0.00 0.00 2.83
389 402 6.096141 TGTTTGTTGCCAGAAAAAGTCAGATA 59.904 34.615 0.00 0.00 0.00 1.98
441 459 9.855021 ATTAGGAATTATTTTTGTTGACGGAAG 57.145 29.630 0.00 0.00 0.00 3.46
448 466 9.859427 TCAGAGCATTAGGAATTATTTTTGTTG 57.141 29.630 0.00 0.00 0.00 3.33
542 654 1.894466 TCACGTTCATAAAGGTCGGGA 59.106 47.619 0.00 0.00 31.34 5.14
545 657 5.524511 TGAAATCACGTTCATAAAGGTCG 57.475 39.130 0.00 0.00 32.56 4.79
583 695 3.248602 ACTTGCTTAGTTTTCTGTCTGCG 59.751 43.478 0.00 0.00 31.29 5.18
698 812 1.632948 GGACTAACGGGCGAAAGTGC 61.633 60.000 0.00 0.00 0.00 4.40
710 824 3.378339 ACGCGCATATACAAGGACTAAC 58.622 45.455 5.73 0.00 0.00 2.34
712 826 2.619646 TGACGCGCATATACAAGGACTA 59.380 45.455 5.73 0.00 0.00 2.59
754 868 4.410743 GCTCAGCAGTTTGCCGCC 62.411 66.667 0.00 0.00 46.52 6.13
765 879 3.873883 GTGGCATGAGCGCTCAGC 61.874 66.667 39.64 36.58 43.61 4.26
771 886 0.530650 ATTAGTCCGTGGCATGAGCG 60.531 55.000 8.63 0.00 43.41 5.03
880 997 0.872021 AAATCATCTCGCGAGCGACC 60.872 55.000 30.97 0.00 44.01 4.79
944 1067 0.681243 GTGAATTCTCAGGGGGTGCC 60.681 60.000 7.05 0.00 30.14 5.01
966 1098 1.372087 GCTTCCGGATTGCTGGTGAG 61.372 60.000 18.97 6.23 41.60 3.51
967 1099 1.377202 GCTTCCGGATTGCTGGTGA 60.377 57.895 18.97 0.00 41.60 4.02
968 1100 2.753966 CGCTTCCGGATTGCTGGTG 61.754 63.158 22.13 7.87 41.60 4.17
970 1102 3.880846 GCGCTTCCGGATTGCTGG 61.881 66.667 22.13 12.24 42.30 4.85
971 1103 2.817423 GAGCGCTTCCGGATTGCTG 61.817 63.158 24.86 18.36 35.73 4.41
972 1104 2.512515 GAGCGCTTCCGGATTGCT 60.513 61.111 21.34 21.34 38.89 3.91
973 1105 3.577313 GGAGCGCTTCCGGATTGC 61.577 66.667 13.26 12.63 35.91 3.56
1112 1257 1.228367 AACTTGCCCTGTGCTGAGG 60.228 57.895 0.00 0.00 42.00 3.86
1116 1261 1.302033 CTCGAACTTGCCCTGTGCT 60.302 57.895 0.00 0.00 42.00 4.40
1337 1482 0.728466 GTTCGAAGACCAGACGACGG 60.728 60.000 0.00 0.00 34.32 4.79
1344 1489 1.738099 CGGCAGGTTCGAAGACCAG 60.738 63.158 8.93 1.86 34.32 4.00
1812 1979 1.623811 ACGTACATCTTCAACTGGCCT 59.376 47.619 3.32 0.00 0.00 5.19
1984 2167 4.301505 GCTGAGCGTCCAATTCCA 57.698 55.556 0.00 0.00 0.00 3.53
2317 2513 0.246635 TTCTTCCTGTCTACGCTGCC 59.753 55.000 0.00 0.00 0.00 4.85
2318 2514 2.080286 TTTCTTCCTGTCTACGCTGC 57.920 50.000 0.00 0.00 0.00 5.25
2319 2515 3.372206 CCATTTTCTTCCTGTCTACGCTG 59.628 47.826 0.00 0.00 0.00 5.18
2421 2623 0.404040 TCCTCCGGGCAAGAACAATT 59.596 50.000 0.00 0.00 0.00 2.32
2788 3012 3.453679 GTCGCGGAAGAGGAGGCT 61.454 66.667 6.13 0.00 0.00 4.58
2833 3057 1.398041 CACACCGACCATTATGCAGTG 59.602 52.381 0.00 0.00 0.00 3.66
3168 3399 0.606604 ACGAATCACTACACCCGCTT 59.393 50.000 0.00 0.00 0.00 4.68
3372 3606 2.680352 ACATGGACGACGCCCTCT 60.680 61.111 0.79 0.00 0.00 3.69
3492 3730 5.405571 ACGCTTGTAGAATTGTACTCTTGTG 59.594 40.000 13.36 9.43 0.00 3.33
3521 3759 5.171337 GGCACGATAAATTCTTTGTATTGCG 59.829 40.000 0.00 0.00 0.00 4.85
3576 3815 1.348064 TTCTTCCTGTCACCGATGGT 58.652 50.000 0.00 0.00 35.62 3.55
3580 3819 3.485463 AACAATTCTTCCTGTCACCGA 57.515 42.857 0.00 0.00 0.00 4.69
4020 4313 5.132502 TCTTCTTCCTCAACATCTTTTGCA 58.867 37.500 0.00 0.00 0.00 4.08
4060 4354 2.292455 CCATCCCCAATCCACCTTTCTT 60.292 50.000 0.00 0.00 0.00 2.52
4180 4474 3.390135 ACAGCGATATCCATTACCGTTG 58.610 45.455 0.00 0.00 37.45 4.10
4248 4542 3.550436 GCGGAGTATAAAGACGGAGGAAG 60.550 52.174 0.00 0.00 0.00 3.46
4250 4544 1.952296 GCGGAGTATAAAGACGGAGGA 59.048 52.381 0.00 0.00 0.00 3.71
4251 4545 1.679680 TGCGGAGTATAAAGACGGAGG 59.320 52.381 0.00 0.00 0.00 4.30
4252 4546 3.644884 ATGCGGAGTATAAAGACGGAG 57.355 47.619 0.00 0.00 0.00 4.63
4253 4547 4.139786 AGTATGCGGAGTATAAAGACGGA 58.860 43.478 0.00 0.00 36.73 4.69
4254 4548 4.500603 AGTATGCGGAGTATAAAGACGG 57.499 45.455 0.00 0.00 36.73 4.79
4255 4549 6.238610 ACTAGTATGCGGAGTATAAAGACG 57.761 41.667 0.00 0.00 36.73 4.18
4256 4550 8.753175 CAAAACTAGTATGCGGAGTATAAAGAC 58.247 37.037 0.00 0.00 36.73 3.01
4257 4551 8.689061 TCAAAACTAGTATGCGGAGTATAAAGA 58.311 33.333 0.00 0.00 36.73 2.52
4258 4552 8.867112 TCAAAACTAGTATGCGGAGTATAAAG 57.133 34.615 0.00 0.00 36.73 1.85
4259 4553 9.090692 GTTCAAAACTAGTATGCGGAGTATAAA 57.909 33.333 0.00 0.00 36.73 1.40
4260 4554 8.472413 AGTTCAAAACTAGTATGCGGAGTATAA 58.528 33.333 0.00 0.00 40.69 0.98
4261 4555 8.004087 AGTTCAAAACTAGTATGCGGAGTATA 57.996 34.615 0.00 0.00 40.69 1.47
4262 4556 6.875076 AGTTCAAAACTAGTATGCGGAGTAT 58.125 36.000 0.00 0.00 40.69 2.12
4263 4557 6.276832 AGTTCAAAACTAGTATGCGGAGTA 57.723 37.500 0.00 0.00 40.69 2.59
4264 4558 5.148651 AGTTCAAAACTAGTATGCGGAGT 57.851 39.130 0.00 0.00 40.69 3.85
4265 4559 6.812160 ACTTAGTTCAAAACTAGTATGCGGAG 59.188 38.462 0.00 0.00 44.22 4.63
4266 4560 6.694447 ACTTAGTTCAAAACTAGTATGCGGA 58.306 36.000 0.00 0.00 44.22 5.54
4267 4561 6.588756 TGACTTAGTTCAAAACTAGTATGCGG 59.411 38.462 0.00 0.00 44.22 5.69
4268 4562 7.576750 TGACTTAGTTCAAAACTAGTATGCG 57.423 36.000 0.00 0.00 44.22 4.73
4269 4563 9.595357 GTTTGACTTAGTTCAAAACTAGTATGC 57.405 33.333 0.00 0.00 44.96 3.14
4321 4615 9.768662 ATTGTGAAAGCTTAGATTGTTTTTGAT 57.231 25.926 0.00 0.00 0.00 2.57
4326 4620 9.683069 CTGTTATTGTGAAAGCTTAGATTGTTT 57.317 29.630 0.00 0.00 0.00 2.83
4327 4621 9.066892 TCTGTTATTGTGAAAGCTTAGATTGTT 57.933 29.630 0.00 0.00 0.00 2.83
4328 4622 8.621532 TCTGTTATTGTGAAAGCTTAGATTGT 57.378 30.769 0.00 0.00 0.00 2.71
4363 4657 8.799367 CCAAATCAATAGCCATTAGAATCATGA 58.201 33.333 0.00 0.00 0.00 3.07
4364 4658 8.582437 ACCAAATCAATAGCCATTAGAATCATG 58.418 33.333 0.00 0.00 0.00 3.07
4365 4659 8.716674 ACCAAATCAATAGCCATTAGAATCAT 57.283 30.769 0.00 0.00 0.00 2.45
4366 4660 9.812347 ATACCAAATCAATAGCCATTAGAATCA 57.188 29.630 0.00 0.00 0.00 2.57
4369 4663 9.420118 ACAATACCAAATCAATAGCCATTAGAA 57.580 29.630 0.00 0.00 0.00 2.10
4370 4664 8.995027 ACAATACCAAATCAATAGCCATTAGA 57.005 30.769 0.00 0.00 0.00 2.10
4373 4667 9.816354 GTTAACAATACCAAATCAATAGCCATT 57.184 29.630 0.00 0.00 0.00 3.16
4374 4668 8.134895 CGTTAACAATACCAAATCAATAGCCAT 58.865 33.333 6.39 0.00 0.00 4.40
4375 4669 7.121463 ACGTTAACAATACCAAATCAATAGCCA 59.879 33.333 6.39 0.00 0.00 4.75
4376 4670 7.477494 ACGTTAACAATACCAAATCAATAGCC 58.523 34.615 6.39 0.00 0.00 3.93
4377 4671 8.905103 AACGTTAACAATACCAAATCAATAGC 57.095 30.769 0.00 0.00 0.00 2.97
4409 4703 8.260818 TGAATTTTGACCAAGTCCATACAAAAA 58.739 29.630 0.00 0.00 39.44 1.94
4410 4704 7.786030 TGAATTTTGACCAAGTCCATACAAAA 58.214 30.769 0.00 0.00 39.98 2.44
4411 4705 7.353414 TGAATTTTGACCAAGTCCATACAAA 57.647 32.000 0.00 0.00 0.00 2.83
4412 4706 6.968263 TGAATTTTGACCAAGTCCATACAA 57.032 33.333 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.