Multiple sequence alignment - TraesCS7D01G444300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G444300 chr7D 100.000 4533 0 0 1 4533 565429496 565424964 0.000000e+00 8371.0
1 TraesCS7D01G444300 chr7D 83.743 1181 102 25 2194 3372 565394423 565393331 0.000000e+00 1035.0
2 TraesCS7D01G444300 chr7D 92.432 370 26 1 1 370 43129857 43129490 1.120000e-145 527.0
3 TraesCS7D01G444300 chr7D 91.777 377 24 4 1 373 206447957 206448330 6.720000e-143 518.0
4 TraesCS7D01G444300 chr7D 91.688 385 13 6 3512 3882 565391065 565390686 2.420000e-142 516.0
5 TraesCS7D01G444300 chr7D 86.966 445 31 10 3936 4353 264984446 264984002 4.100000e-130 475.0
6 TraesCS7D01G444300 chr7D 86.504 452 30 17 3933 4353 595981041 595981492 6.870000e-128 468.0
7 TraesCS7D01G444300 chr7D 93.056 216 12 2 4320 4533 468324023 468324237 3.400000e-81 313.0
8 TraesCS7D01G444300 chr7B 92.099 3531 157 45 388 3861 615797382 615793917 0.000000e+00 4863.0
9 TraesCS7D01G444300 chr7B 86.062 739 69 14 2197 2933 615787276 615786570 0.000000e+00 763.0
10 TraesCS7D01G444300 chr7B 86.190 630 50 12 3932 4531 624167536 624168158 0.000000e+00 647.0
11 TraesCS7D01G444300 chr7B 87.327 434 30 16 3512 3935 615762956 615762538 1.480000e-129 473.0
12 TraesCS7D01G444300 chr7B 78.593 654 84 34 3235 3866 615734846 615734227 9.200000e-102 381.0
13 TraesCS7D01G444300 chr7B 87.291 299 32 2 2929 3221 615776728 615776430 2.020000e-88 337.0
14 TraesCS7D01G444300 chr7B 88.623 167 10 2 2840 2998 615735120 615734955 1.290000e-45 195.0
15 TraesCS7D01G444300 chr7B 79.878 328 17 8 2445 2770 615735416 615735136 1.290000e-45 195.0
16 TraesCS7D01G444300 chr7B 92.105 114 8 1 3217 3329 615764887 615764774 4.690000e-35 159.0
17 TraesCS7D01G444300 chr7B 83.200 125 13 3 2300 2416 615737529 615737405 1.720000e-19 108.0
18 TraesCS7D01G444300 chr7B 100.000 29 0 0 3344 3372 615764734 615764706 2.000000e-03 54.7
19 TraesCS7D01G444300 chr7A 89.353 3231 167 78 428 3568 651712968 651709825 0.000000e+00 3897.0
20 TraesCS7D01G444300 chr7A 91.777 377 23 7 1 373 83762552 83762924 6.720000e-143 518.0
21 TraesCS7D01G444300 chr7A 87.819 353 22 8 3581 3931 651709473 651709140 1.180000e-105 394.0
22 TraesCS7D01G444300 chr7A 92.500 160 12 0 1334 1493 275869648 275869807 3.530000e-56 230.0
23 TraesCS7D01G444300 chr7A 76.102 431 67 24 1209 1624 275869937 275869528 4.630000e-45 193.0
24 TraesCS7D01G444300 chr1D 93.514 370 21 2 1 367 384505082 384505451 8.570000e-152 547.0
25 TraesCS7D01G444300 chr1D 87.723 448 31 12 3930 4353 448104051 448104498 6.770000e-138 501.0
26 TraesCS7D01G444300 chr1D 86.918 451 32 3 3930 4353 302826024 302826474 8.820000e-132 481.0
27 TraesCS7D01G444300 chr1D 86.099 446 37 13 3932 4353 18574895 18574451 1.490000e-124 457.0
28 TraesCS7D01G444300 chr1D 97.409 193 5 0 4341 4533 308059538 308059730 3.380000e-86 329.0
29 TraesCS7D01G444300 chr5D 92.742 372 25 1 1 372 476614478 476614109 1.860000e-148 536.0
30 TraesCS7D01G444300 chr5D 88.046 435 35 8 3936 4353 563851951 563851517 2.430000e-137 499.0
31 TraesCS7D01G444300 chr5D 86.996 446 31 3 3935 4353 345999451 345999896 1.140000e-130 477.0
32 TraesCS7D01G444300 chr5D 86.425 442 28 2 3936 4353 375861059 375860626 5.350000e-124 455.0
33 TraesCS7D01G444300 chr5D 95.980 199 8 0 4335 4533 247820838 247820640 1.570000e-84 324.0
34 TraesCS7D01G444300 chr5D 94.762 210 7 4 4326 4533 446206011 446206218 1.570000e-84 324.0
35 TraesCS7D01G444300 chr5D 95.567 203 5 3 4335 4533 76137306 76137508 5.660000e-84 322.0
36 TraesCS7D01G444300 chr3D 92.643 367 26 1 1 367 16260463 16260828 1.120000e-145 527.0
37 TraesCS7D01G444300 chr3D 88.262 443 27 7 3936 4353 54458708 54459150 1.460000e-139 507.0
38 TraesCS7D01G444300 chr3D 87.919 447 30 6 3931 4353 480959962 480960408 5.230000e-139 505.0
39 TraesCS7D01G444300 chr3D 97.423 194 4 1 4340 4533 68540467 68540659 3.380000e-86 329.0
40 TraesCS7D01G444300 chr1A 92.643 367 25 1 1 367 518087314 518086950 1.120000e-145 527.0
41 TraesCS7D01G444300 chr4D 88.565 446 26 7 3932 4353 490098469 490098913 6.720000e-143 518.0
42 TraesCS7D01G444300 chr4D 87.692 455 32 6 3926 4356 380344064 380343610 4.050000e-140 508.0
43 TraesCS7D01G444300 chr4D 95.567 203 7 2 4332 4533 349495221 349495422 1.570000e-84 324.0
44 TraesCS7D01G444300 chr4D 94.340 212 8 4 4326 4533 351783502 351783713 5.660000e-84 322.0
45 TraesCS7D01G444300 chr2D 91.512 377 29 3 1 377 638396377 638396004 2.420000e-142 516.0
46 TraesCS7D01G444300 chr2D 91.444 374 29 2 1 374 556947365 556947735 1.120000e-140 510.0
47 TraesCS7D01G444300 chr2D 87.696 447 30 7 3931 4353 411746581 411747026 8.760000e-137 497.0
48 TraesCS7D01G444300 chr5A 87.215 438 36 6 3936 4353 474287687 474288124 8.820000e-132 481.0
49 TraesCS7D01G444300 chr5B 87.133 443 32 6 3935 4353 54555000 54555441 3.170000e-131 479.0
50 TraesCS7D01G444300 chr3A 86.682 443 34 10 3936 4353 77489109 77489551 6.870000e-128 468.0
51 TraesCS7D01G444300 chr1B 85.965 456 31 5 3930 4353 688072900 688073354 1.490000e-124 457.0
52 TraesCS7D01G444300 chr2A 92.357 157 12 0 1337 1493 103517807 103517651 1.640000e-54 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G444300 chr7D 565424964 565429496 4532 True 8371.00 8371 100.0000 1 4533 1 chr7D.!!$R3 4532
1 TraesCS7D01G444300 chr7D 565390686 565394423 3737 True 775.50 1035 87.7155 2194 3882 2 chr7D.!!$R4 1688
2 TraesCS7D01G444300 chr7B 615793917 615797382 3465 True 4863.00 4863 92.0990 388 3861 1 chr7B.!!$R3 3473
3 TraesCS7D01G444300 chr7B 615786570 615787276 706 True 763.00 763 86.0620 2197 2933 1 chr7B.!!$R2 736
4 TraesCS7D01G444300 chr7B 624167536 624168158 622 False 647.00 647 86.1900 3932 4531 1 chr7B.!!$F1 599
5 TraesCS7D01G444300 chr7B 615762538 615764887 2349 True 228.90 473 93.1440 3217 3935 3 chr7B.!!$R5 718
6 TraesCS7D01G444300 chr7B 615734227 615737529 3302 True 219.75 381 82.5735 2300 3866 4 chr7B.!!$R4 1566
7 TraesCS7D01G444300 chr7A 651709140 651712968 3828 True 2145.50 3897 88.5860 428 3931 2 chr7A.!!$R2 3503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.094046 CCGCGCTATTCGTTCGTTTT 59.906 50.000 5.56 0.00 41.07 2.43 F
335 336 0.397564 TTACCCCAAACAGACGGGAC 59.602 55.000 0.00 0.00 46.34 4.46 F
352 353 0.464452 GACCGGACAGGATAGGGTTG 59.536 60.000 9.46 0.00 45.00 3.77 F
520 541 0.600255 AAGCCGAGCATACCATACGC 60.600 55.000 0.00 0.00 0.00 4.42 F
2412 2478 0.739112 GTAGCTCTGTCAGTGCCAGC 60.739 60.000 20.46 12.23 35.47 4.85 F
2481 4513 2.027192 AGGCGGTAAAATCTCTGCTCAA 60.027 45.455 0.00 0.00 36.35 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 2026 0.380378 GCTTGAGCGTCTCGAGATCT 59.620 55.000 19.90 18.06 42.88 2.75 R
2246 2304 2.687805 CGCTTGTCCGGAGAGACGA 61.688 63.158 17.12 0.52 39.77 4.20 R
2341 2399 1.194997 GTCGTCGTCGGGAGATAGATG 59.805 57.143 1.55 0.00 43.27 2.90 R
2482 4514 1.003331 GAAAACGTTGCACGATGTCCA 60.003 47.619 0.00 0.00 46.05 4.02 R
3476 9352 0.032130 TCGCATCGCCCTGATTACTC 59.968 55.000 0.00 0.00 34.13 2.59 R
4353 10663 0.035439 AGATCCGCCGGTTTTGACAT 60.035 50.000 1.63 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.819595 CGGCCATGTCCGGAAGTG 60.820 66.667 5.23 8.17 45.38 3.16
21 22 2.438434 GGCCATGTCCGGAAGTGG 60.438 66.667 25.08 25.08 34.84 4.00
22 23 2.351276 GCCATGTCCGGAAGTGGT 59.649 61.111 27.89 4.28 34.23 4.16
23 24 1.303317 GCCATGTCCGGAAGTGGTT 60.303 57.895 27.89 1.61 34.23 3.67
24 25 0.893727 GCCATGTCCGGAAGTGGTTT 60.894 55.000 27.89 0.35 34.23 3.27
25 26 0.881118 CCATGTCCGGAAGTGGTTTG 59.119 55.000 22.40 7.19 0.00 2.93
26 27 0.881118 CATGTCCGGAAGTGGTTTGG 59.119 55.000 5.23 0.00 0.00 3.28
27 28 0.476771 ATGTCCGGAAGTGGTTTGGT 59.523 50.000 5.23 0.00 0.00 3.67
28 29 1.129917 TGTCCGGAAGTGGTTTGGTA 58.870 50.000 5.23 0.00 0.00 3.25
29 30 1.071071 TGTCCGGAAGTGGTTTGGTAG 59.929 52.381 5.23 0.00 0.00 3.18
30 31 0.688487 TCCGGAAGTGGTTTGGTAGG 59.312 55.000 0.00 0.00 0.00 3.18
31 32 0.322187 CCGGAAGTGGTTTGGTAGGG 60.322 60.000 0.00 0.00 0.00 3.53
32 33 0.688487 CGGAAGTGGTTTGGTAGGGA 59.312 55.000 0.00 0.00 0.00 4.20
33 34 1.609841 CGGAAGTGGTTTGGTAGGGAC 60.610 57.143 0.00 0.00 0.00 4.46
34 35 1.609841 GGAAGTGGTTTGGTAGGGACG 60.610 57.143 0.00 0.00 0.00 4.79
35 36 0.399075 AAGTGGTTTGGTAGGGACGG 59.601 55.000 0.00 0.00 0.00 4.79
36 37 1.673337 GTGGTTTGGTAGGGACGGC 60.673 63.158 0.00 0.00 0.00 5.68
37 38 2.045634 GGTTTGGTAGGGACGGCC 60.046 66.667 0.00 0.00 0.00 6.13
38 39 2.435410 GTTTGGTAGGGACGGCCG 60.435 66.667 26.86 26.86 33.83 6.13
39 40 3.708544 TTTGGTAGGGACGGCCGG 61.709 66.667 31.76 11.88 33.83 6.13
40 41 4.700448 TTGGTAGGGACGGCCGGA 62.700 66.667 31.76 5.93 33.83 5.14
67 68 3.775654 GTGAGGAGGTGGCCGGAG 61.776 72.222 5.05 0.00 0.00 4.63
68 69 3.992641 TGAGGAGGTGGCCGGAGA 61.993 66.667 5.05 0.00 0.00 3.71
69 70 2.683933 GAGGAGGTGGCCGGAGAA 60.684 66.667 5.05 0.00 0.00 2.87
70 71 2.041265 AGGAGGTGGCCGGAGAAT 59.959 61.111 5.05 0.00 0.00 2.40
71 72 0.759436 GAGGAGGTGGCCGGAGAATA 60.759 60.000 5.05 0.00 0.00 1.75
72 73 0.760945 AGGAGGTGGCCGGAGAATAG 60.761 60.000 5.05 0.00 0.00 1.73
73 74 1.069935 GAGGTGGCCGGAGAATAGC 59.930 63.158 5.05 0.00 0.00 2.97
74 75 2.280186 GGTGGCCGGAGAATAGCG 60.280 66.667 5.05 0.00 0.00 4.26
75 76 2.280186 GTGGCCGGAGAATAGCGG 60.280 66.667 5.05 0.00 0.00 5.52
76 77 4.235762 TGGCCGGAGAATAGCGGC 62.236 66.667 5.05 0.00 45.75 6.53
79 80 3.912907 CCGGAGAATAGCGGCGGT 61.913 66.667 18.21 18.21 0.00 5.68
80 81 2.658593 CGGAGAATAGCGGCGGTG 60.659 66.667 23.33 0.00 0.00 4.94
81 82 2.967615 GGAGAATAGCGGCGGTGC 60.968 66.667 23.33 10.94 0.00 5.01
82 83 2.967615 GAGAATAGCGGCGGTGCC 60.968 66.667 23.33 10.30 46.75 5.01
112 113 3.844090 GGGCGGGAGAGAGAGCAC 61.844 72.222 0.00 0.00 0.00 4.40
113 114 4.200283 GGCGGGAGAGAGAGCACG 62.200 72.222 0.00 0.00 0.00 5.34
114 115 4.200283 GCGGGAGAGAGAGCACGG 62.200 72.222 0.00 0.00 0.00 4.94
115 116 2.438614 CGGGAGAGAGAGCACGGA 60.439 66.667 0.00 0.00 0.00 4.69
116 117 2.046864 CGGGAGAGAGAGCACGGAA 61.047 63.158 0.00 0.00 0.00 4.30
117 118 1.813192 GGGAGAGAGAGCACGGAAG 59.187 63.158 0.00 0.00 0.00 3.46
118 119 1.140804 GGAGAGAGAGCACGGAAGC 59.859 63.158 0.00 0.00 0.00 3.86
119 120 1.226547 GAGAGAGAGCACGGAAGCG 60.227 63.158 0.00 0.00 40.15 4.68
120 121 1.928706 GAGAGAGAGCACGGAAGCGT 61.929 60.000 0.00 0.00 40.15 5.07
121 122 1.080434 GAGAGAGCACGGAAGCGTT 60.080 57.895 0.00 0.00 40.15 4.84
122 123 1.347817 GAGAGAGCACGGAAGCGTTG 61.348 60.000 0.00 0.00 40.15 4.10
123 124 2.357517 AGAGCACGGAAGCGTTGG 60.358 61.111 0.00 0.00 40.15 3.77
124 125 3.423154 GAGCACGGAAGCGTTGGG 61.423 66.667 0.00 0.00 40.15 4.12
125 126 3.876589 GAGCACGGAAGCGTTGGGA 62.877 63.158 0.00 0.00 40.15 4.37
126 127 3.423154 GCACGGAAGCGTTGGGAG 61.423 66.667 0.00 0.00 0.00 4.30
127 128 3.423154 CACGGAAGCGTTGGGAGC 61.423 66.667 0.00 0.00 0.00 4.70
130 131 4.388499 GGAAGCGTTGGGAGCGGA 62.388 66.667 0.00 0.00 40.04 5.54
131 132 2.815647 GAAGCGTTGGGAGCGGAG 60.816 66.667 0.00 0.00 40.04 4.63
132 133 4.394712 AAGCGTTGGGAGCGGAGG 62.395 66.667 0.00 0.00 40.04 4.30
135 136 4.452733 CGTTGGGAGCGGAGGGAC 62.453 72.222 0.00 0.00 0.00 4.46
137 138 3.003173 TTGGGAGCGGAGGGACTG 61.003 66.667 0.00 0.00 41.55 3.51
149 150 2.893398 GGACTGCTAGTGTCCCCG 59.107 66.667 19.74 0.00 46.01 5.73
150 151 1.681327 GGACTGCTAGTGTCCCCGA 60.681 63.158 19.74 0.00 46.01 5.14
151 152 1.511768 GACTGCTAGTGTCCCCGAC 59.488 63.158 6.72 0.00 0.00 4.79
152 153 1.228769 ACTGCTAGTGTCCCCGACA 60.229 57.895 0.00 0.00 40.50 4.35
153 154 1.251527 ACTGCTAGTGTCCCCGACAG 61.252 60.000 0.00 0.00 43.57 3.51
154 155 1.949847 CTGCTAGTGTCCCCGACAGG 61.950 65.000 0.00 0.00 43.57 4.00
155 156 2.893398 CTAGTGTCCCCGACAGGC 59.107 66.667 0.00 0.00 43.57 4.85
156 157 3.064987 CTAGTGTCCCCGACAGGCG 62.065 68.421 0.00 0.00 43.57 5.52
175 176 3.732849 GCCAGGGAGGGGGACAAG 61.733 72.222 0.00 0.00 38.09 3.16
176 177 3.017581 CCAGGGAGGGGGACAAGG 61.018 72.222 0.00 0.00 0.00 3.61
177 178 3.017581 CAGGGAGGGGGACAAGGG 61.018 72.222 0.00 0.00 0.00 3.95
181 182 4.410400 GAGGGGGACAAGGGCGTG 62.410 72.222 0.00 0.00 0.00 5.34
187 188 4.980805 GACAAGGGCGTGCGTCCA 62.981 66.667 17.75 0.00 43.56 4.02
188 189 4.988598 ACAAGGGCGTGCGTCCAG 62.989 66.667 17.75 11.47 43.56 3.86
214 215 3.990806 CGCGCGTTCGTTTCACCA 61.991 61.111 24.19 0.00 38.14 4.17
215 216 2.424640 GCGCGTTCGTTTCACCAC 60.425 61.111 8.43 0.00 38.14 4.16
216 217 3.007516 CGCGTTCGTTTCACCACA 58.992 55.556 0.00 0.00 0.00 4.17
217 218 1.348938 CGCGTTCGTTTCACCACAA 59.651 52.632 0.00 0.00 0.00 3.33
218 219 0.247735 CGCGTTCGTTTCACCACAAA 60.248 50.000 0.00 0.00 0.00 2.83
219 220 1.185189 GCGTTCGTTTCACCACAAAC 58.815 50.000 0.00 0.00 33.57 2.93
220 221 1.817609 CGTTCGTTTCACCACAAACC 58.182 50.000 0.00 0.00 33.37 3.27
221 222 1.817609 GTTCGTTTCACCACAAACCG 58.182 50.000 0.00 0.00 33.37 4.44
222 223 1.397692 GTTCGTTTCACCACAAACCGA 59.602 47.619 0.00 0.00 33.37 4.69
223 224 1.292061 TCGTTTCACCACAAACCGAG 58.708 50.000 0.00 0.00 33.37 4.63
224 225 0.316689 CGTTTCACCACAAACCGAGC 60.317 55.000 0.00 0.00 33.37 5.03
225 226 0.316689 GTTTCACCACAAACCGAGCG 60.317 55.000 0.00 0.00 31.10 5.03
226 227 2.054140 TTTCACCACAAACCGAGCGC 62.054 55.000 0.00 0.00 0.00 5.92
227 228 3.276091 CACCACAAACCGAGCGCA 61.276 61.111 11.47 0.00 0.00 6.09
228 229 2.515057 ACCACAAACCGAGCGCAA 60.515 55.556 11.47 0.00 0.00 4.85
229 230 2.252260 CCACAAACCGAGCGCAAG 59.748 61.111 11.47 1.89 43.44 4.01
230 231 2.542907 CCACAAACCGAGCGCAAGT 61.543 57.895 11.47 0.00 41.68 3.16
231 232 1.355210 CACAAACCGAGCGCAAGTT 59.645 52.632 11.47 7.07 41.68 2.66
232 233 0.248458 CACAAACCGAGCGCAAGTTT 60.248 50.000 11.47 13.31 41.68 2.66
233 234 2.494550 CAAACCGAGCGCAAGTTTG 58.505 52.632 25.24 25.24 42.93 2.93
237 238 4.404654 CGAGCGCAAGTTTGGGGC 62.405 66.667 11.47 0.00 43.74 5.80
242 243 4.986708 GCAAGTTTGGGGCGGGGA 62.987 66.667 0.00 0.00 0.00 4.81
243 244 2.037208 CAAGTTTGGGGCGGGGAT 59.963 61.111 0.00 0.00 0.00 3.85
244 245 2.037208 AAGTTTGGGGCGGGGATG 59.963 61.111 0.00 0.00 0.00 3.51
245 246 3.600410 AAGTTTGGGGCGGGGATGG 62.600 63.158 0.00 0.00 0.00 3.51
252 253 4.104183 GGCGGGGATGGGTCGAAA 62.104 66.667 0.00 0.00 0.00 3.46
253 254 2.045731 GCGGGGATGGGTCGAAAA 60.046 61.111 0.00 0.00 0.00 2.29
254 255 2.404186 GCGGGGATGGGTCGAAAAC 61.404 63.158 0.00 0.00 0.00 2.43
255 256 2.104253 CGGGGATGGGTCGAAAACG 61.104 63.158 0.00 0.00 0.00 3.60
256 257 1.747745 GGGGATGGGTCGAAAACGG 60.748 63.158 0.00 0.00 0.00 4.44
257 258 1.297364 GGGATGGGTCGAAAACGGA 59.703 57.895 0.00 0.00 0.00 4.69
258 259 1.022982 GGGATGGGTCGAAAACGGAC 61.023 60.000 0.00 0.00 0.00 4.79
259 260 1.356527 GGATGGGTCGAAAACGGACG 61.357 60.000 0.00 0.00 35.24 4.79
260 261 1.356527 GATGGGTCGAAAACGGACGG 61.357 60.000 0.00 0.00 35.24 4.79
261 262 1.818959 ATGGGTCGAAAACGGACGGA 61.819 55.000 0.00 0.00 35.24 4.69
262 263 1.300853 GGGTCGAAAACGGACGGAA 60.301 57.895 0.00 0.00 35.24 4.30
263 264 0.671472 GGGTCGAAAACGGACGGAAT 60.671 55.000 0.00 0.00 35.24 3.01
264 265 0.717784 GGTCGAAAACGGACGGAATC 59.282 55.000 0.00 0.00 35.24 2.52
265 266 0.717784 GTCGAAAACGGACGGAATCC 59.282 55.000 0.00 0.00 45.20 3.01
286 287 2.331809 GACATTTGTCCGTTTGAGGC 57.668 50.000 0.00 0.00 39.07 4.70
287 288 0.958822 ACATTTGTCCGTTTGAGGCC 59.041 50.000 0.00 0.00 0.00 5.19
288 289 0.109781 CATTTGTCCGTTTGAGGCCG 60.110 55.000 0.00 0.00 0.00 6.13
289 290 1.862602 ATTTGTCCGTTTGAGGCCGC 61.863 55.000 0.00 0.00 0.00 6.53
310 311 4.891727 CTGGGCCGCGCTATTCGT 62.892 66.667 5.56 0.00 41.07 3.85
311 312 4.460683 TGGGCCGCGCTATTCGTT 62.461 61.111 5.56 0.00 41.07 3.85
312 313 3.637030 GGGCCGCGCTATTCGTTC 61.637 66.667 5.56 0.00 41.07 3.95
313 314 3.984765 GGCCGCGCTATTCGTTCG 61.985 66.667 5.56 0.00 41.07 3.95
314 315 3.252484 GCCGCGCTATTCGTTCGT 61.252 61.111 5.56 0.00 41.07 3.85
315 316 2.795389 GCCGCGCTATTCGTTCGTT 61.795 57.895 5.56 0.00 41.07 3.85
316 317 1.705727 CCGCGCTATTCGTTCGTTT 59.294 52.632 5.56 0.00 41.07 3.60
317 318 0.094046 CCGCGCTATTCGTTCGTTTT 59.906 50.000 5.56 0.00 41.07 2.43
318 319 1.321148 CCGCGCTATTCGTTCGTTTTA 59.679 47.619 5.56 0.00 41.07 1.52
319 320 2.339096 CGCGCTATTCGTTCGTTTTAC 58.661 47.619 5.56 0.00 41.07 2.01
320 321 2.686342 GCGCTATTCGTTCGTTTTACC 58.314 47.619 0.00 0.00 41.07 2.85
321 322 2.535534 GCGCTATTCGTTCGTTTTACCC 60.536 50.000 0.00 0.00 41.07 3.69
322 323 2.029606 CGCTATTCGTTCGTTTTACCCC 59.970 50.000 0.00 0.00 0.00 4.95
323 324 3.002102 GCTATTCGTTCGTTTTACCCCA 58.998 45.455 0.00 0.00 0.00 4.96
324 325 3.436359 GCTATTCGTTCGTTTTACCCCAA 59.564 43.478 0.00 0.00 0.00 4.12
325 326 4.083377 GCTATTCGTTCGTTTTACCCCAAA 60.083 41.667 0.00 0.00 0.00 3.28
326 327 3.689309 TTCGTTCGTTTTACCCCAAAC 57.311 42.857 0.00 0.00 33.90 2.93
327 328 2.636830 TCGTTCGTTTTACCCCAAACA 58.363 42.857 0.00 0.00 36.58 2.83
328 329 2.613133 TCGTTCGTTTTACCCCAAACAG 59.387 45.455 0.00 0.00 36.58 3.16
329 330 2.613133 CGTTCGTTTTACCCCAAACAGA 59.387 45.455 0.00 0.00 36.58 3.41
330 331 3.546616 CGTTCGTTTTACCCCAAACAGAC 60.547 47.826 0.00 0.00 36.58 3.51
331 332 2.211806 TCGTTTTACCCCAAACAGACG 58.788 47.619 0.00 0.00 36.58 4.18
332 333 1.264826 CGTTTTACCCCAAACAGACGG 59.735 52.381 0.00 0.00 36.58 4.79
333 334 1.610038 GTTTTACCCCAAACAGACGGG 59.390 52.381 0.00 0.00 43.05 5.28
334 335 1.138568 TTTACCCCAAACAGACGGGA 58.861 50.000 0.00 0.00 46.34 5.14
335 336 0.397564 TTACCCCAAACAGACGGGAC 59.602 55.000 0.00 0.00 46.34 4.46
336 337 1.482748 TACCCCAAACAGACGGGACC 61.483 60.000 0.00 0.00 46.34 4.46
337 338 2.358247 CCCAAACAGACGGGACCG 60.358 66.667 9.56 9.56 46.34 4.79
338 339 2.358247 CCAAACAGACGGGACCGG 60.358 66.667 15.92 0.00 44.69 5.28
339 340 2.738480 CAAACAGACGGGACCGGA 59.262 61.111 9.46 0.00 44.69 5.14
340 341 1.666872 CAAACAGACGGGACCGGAC 60.667 63.158 9.46 0.00 44.69 4.79
341 342 2.135581 AAACAGACGGGACCGGACA 61.136 57.895 9.46 0.00 44.69 4.02
342 343 2.095978 AAACAGACGGGACCGGACAG 62.096 60.000 9.46 3.67 44.69 3.51
344 345 3.975591 AGACGGGACCGGACAGGA 61.976 66.667 9.46 0.00 45.00 3.86
345 346 2.758737 GACGGGACCGGACAGGAT 60.759 66.667 9.46 0.00 45.00 3.24
346 347 1.454479 GACGGGACCGGACAGGATA 60.454 63.158 9.46 0.00 45.00 2.59
347 348 1.453762 GACGGGACCGGACAGGATAG 61.454 65.000 9.46 0.00 45.00 2.08
348 349 2.201022 CGGGACCGGACAGGATAGG 61.201 68.421 9.46 0.00 45.00 2.57
349 350 1.837499 GGGACCGGACAGGATAGGG 60.837 68.421 9.46 0.00 45.00 3.53
350 351 1.075450 GGACCGGACAGGATAGGGT 60.075 63.158 9.46 0.00 45.00 4.34
351 352 0.690077 GGACCGGACAGGATAGGGTT 60.690 60.000 9.46 0.00 45.00 4.11
352 353 0.464452 GACCGGACAGGATAGGGTTG 59.536 60.000 9.46 0.00 45.00 3.77
353 354 1.146263 CCGGACAGGATAGGGTTGC 59.854 63.158 0.00 0.00 45.00 4.17
354 355 1.227263 CGGACAGGATAGGGTTGCG 60.227 63.158 0.00 0.00 0.00 4.85
355 356 1.523938 GGACAGGATAGGGTTGCGC 60.524 63.158 0.00 0.00 0.00 6.09
356 357 1.883084 GACAGGATAGGGTTGCGCG 60.883 63.158 0.00 0.00 0.00 6.86
357 358 2.588877 CAGGATAGGGTTGCGCGG 60.589 66.667 8.83 0.00 0.00 6.46
358 359 3.081409 AGGATAGGGTTGCGCGGT 61.081 61.111 8.83 0.00 0.00 5.68
359 360 2.895372 GGATAGGGTTGCGCGGTG 60.895 66.667 8.83 0.00 0.00 4.94
360 361 2.895372 GATAGGGTTGCGCGGTGG 60.895 66.667 8.83 0.00 0.00 4.61
361 362 3.379865 GATAGGGTTGCGCGGTGGA 62.380 63.158 8.83 0.00 0.00 4.02
362 363 3.385749 ATAGGGTTGCGCGGTGGAG 62.386 63.158 8.83 0.00 0.00 3.86
365 366 4.025401 GGTTGCGCGGTGGAGTTG 62.025 66.667 8.83 0.00 0.00 3.16
366 367 4.025401 GTTGCGCGGTGGAGTTGG 62.025 66.667 8.83 0.00 0.00 3.77
370 371 4.077184 CGCGGTGGAGTTGGGCTA 62.077 66.667 0.00 0.00 0.00 3.93
371 372 2.349755 GCGGTGGAGTTGGGCTAA 59.650 61.111 0.00 0.00 0.00 3.09
372 373 1.745489 GCGGTGGAGTTGGGCTAAG 60.745 63.158 0.00 0.00 0.00 2.18
373 374 1.677552 CGGTGGAGTTGGGCTAAGT 59.322 57.895 0.00 0.00 0.00 2.24
374 375 0.899720 CGGTGGAGTTGGGCTAAGTA 59.100 55.000 0.00 0.00 0.00 2.24
375 376 1.405121 CGGTGGAGTTGGGCTAAGTAC 60.405 57.143 0.00 0.00 0.00 2.73
376 377 1.907255 GGTGGAGTTGGGCTAAGTACT 59.093 52.381 2.11 0.00 0.00 2.73
377 378 2.305052 GGTGGAGTTGGGCTAAGTACTT 59.695 50.000 13.68 13.68 0.00 2.24
378 379 3.335579 GTGGAGTTGGGCTAAGTACTTG 58.664 50.000 18.56 9.20 0.00 3.16
379 380 3.007614 GTGGAGTTGGGCTAAGTACTTGA 59.992 47.826 18.56 1.90 0.00 3.02
380 381 3.007614 TGGAGTTGGGCTAAGTACTTGAC 59.992 47.826 18.56 10.00 0.00 3.18
381 382 3.007614 GGAGTTGGGCTAAGTACTTGACA 59.992 47.826 18.56 8.54 0.00 3.58
382 383 4.246458 GAGTTGGGCTAAGTACTTGACAG 58.754 47.826 18.56 8.83 0.00 3.51
383 384 3.008049 AGTTGGGCTAAGTACTTGACAGG 59.992 47.826 18.56 4.55 0.00 4.00
384 385 1.906574 TGGGCTAAGTACTTGACAGGG 59.093 52.381 18.56 2.94 0.00 4.45
385 386 1.209747 GGGCTAAGTACTTGACAGGGG 59.790 57.143 18.56 1.36 0.00 4.79
386 387 2.185387 GGCTAAGTACTTGACAGGGGA 58.815 52.381 18.56 0.00 0.00 4.81
422 423 7.013464 AGCATCTACTACCATTCACAGTACTAC 59.987 40.741 0.00 0.00 0.00 2.73
507 528 1.855213 GCACACATGAAGCAAGCCGA 61.855 55.000 0.00 0.00 0.00 5.54
512 533 1.302366 CATGAAGCAAGCCGAGCATA 58.698 50.000 0.00 0.00 0.00 3.14
514 535 0.744414 TGAAGCAAGCCGAGCATACC 60.744 55.000 0.00 0.00 0.00 2.73
520 541 0.600255 AAGCCGAGCATACCATACGC 60.600 55.000 0.00 0.00 0.00 4.42
522 543 1.007734 CCGAGCATACCATACGCGT 60.008 57.895 19.17 19.17 0.00 6.01
919 963 4.887190 ACGCGCCCACCAAAACCT 62.887 61.111 5.73 0.00 0.00 3.50
920 964 4.341502 CGCGCCCACCAAAACCTG 62.342 66.667 0.00 0.00 0.00 4.00
921 965 4.662961 GCGCCCACCAAAACCTGC 62.663 66.667 0.00 0.00 0.00 4.85
922 966 4.341502 CGCCCACCAAAACCTGCG 62.342 66.667 0.00 0.00 35.81 5.18
923 967 3.223589 GCCCACCAAAACCTGCGT 61.224 61.111 0.00 0.00 0.00 5.24
929 973 2.252260 CAAAACCTGCGTGCGAGG 59.748 61.111 8.25 8.25 36.57 4.63
930 974 3.660111 AAAACCTGCGTGCGAGGC 61.660 61.111 9.35 0.00 33.39 4.70
968 1012 3.695606 GCCGCAGTCCCAGTCTCA 61.696 66.667 0.00 0.00 0.00 3.27
990 1034 2.826287 CACCCACCAACACACGCA 60.826 61.111 0.00 0.00 0.00 5.24
991 1035 2.192861 CACCCACCAACACACGCAT 61.193 57.895 0.00 0.00 0.00 4.73
992 1036 1.896660 ACCCACCAACACACGCATC 60.897 57.895 0.00 0.00 0.00 3.91
993 1037 2.555782 CCACCAACACACGCATCG 59.444 61.111 0.00 0.00 0.00 3.84
997 1041 2.029288 CCAACACACGCATCGCTCT 61.029 57.895 0.00 0.00 0.00 4.09
1006 1050 1.522580 GCATCGCTCTTCAGACCCC 60.523 63.158 0.00 0.00 0.00 4.95
1229 1280 3.656045 CGCGCCACTCCCGTTTTT 61.656 61.111 0.00 0.00 0.00 1.94
1230 1281 2.254350 GCGCCACTCCCGTTTTTC 59.746 61.111 0.00 0.00 0.00 2.29
1234 1285 0.875059 GCCACTCCCGTTTTTCTCTG 59.125 55.000 0.00 0.00 0.00 3.35
1240 1291 4.024809 CACTCCCGTTTTTCTCTGTTCTTC 60.025 45.833 0.00 0.00 0.00 2.87
1253 1308 1.000521 TTCTTCCCCCTCGCTCGTA 60.001 57.895 0.00 0.00 0.00 3.43
1262 1317 2.557056 CCCCTCGCTCGTAGATTAATGA 59.443 50.000 0.00 0.00 33.89 2.57
1263 1318 3.366476 CCCCTCGCTCGTAGATTAATGAG 60.366 52.174 0.00 0.00 35.89 2.90
1264 1319 3.502595 CCCTCGCTCGTAGATTAATGAGA 59.497 47.826 0.00 0.00 34.94 3.27
1274 1332 7.047891 TCGTAGATTAATGAGAATGCTTGGTT 58.952 34.615 0.00 0.00 0.00 3.67
1278 1336 7.318141 AGATTAATGAGAATGCTTGGTTTGTG 58.682 34.615 0.00 0.00 0.00 3.33
1279 1337 2.798976 TGAGAATGCTTGGTTTGTGC 57.201 45.000 0.00 0.00 0.00 4.57
2121 2179 3.121030 CCGCAGCCTCCAACTTCG 61.121 66.667 0.00 0.00 0.00 3.79
2181 2239 4.796231 CCGCGTTCTCCTGACCGG 62.796 72.222 4.92 0.00 0.00 5.28
2283 2341 1.460255 CCACCAGCCCCTCAAGAAA 59.540 57.895 0.00 0.00 0.00 2.52
2412 2478 0.739112 GTAGCTCTGTCAGTGCCAGC 60.739 60.000 20.46 12.23 35.47 4.85
2481 4513 2.027192 AGGCGGTAAAATCTCTGCTCAA 60.027 45.455 0.00 0.00 36.35 3.02
2482 4514 2.945668 GGCGGTAAAATCTCTGCTCAAT 59.054 45.455 0.00 0.00 36.35 2.57
2904 4961 4.458829 ACCGGATGAGGAGCCCGA 62.459 66.667 9.46 0.00 45.58 5.14
3327 5398 6.093357 GGTCTTCTGATCAATCTTTTCCACTC 59.907 42.308 0.00 0.00 0.00 3.51
3330 5401 5.494724 TCTGATCAATCTTTTCCACTCCAG 58.505 41.667 0.00 0.00 0.00 3.86
3384 7617 7.820386 AGATCAGAGCAGAGCATTAGAATATTG 59.180 37.037 0.00 0.00 0.00 1.90
3483 9359 9.786105 GTTACAGTACTGTTCTTAGGAGTAATC 57.214 37.037 32.15 6.58 41.83 1.75
3493 9369 0.394565 AGGAGTAATCAGGGCGATGC 59.605 55.000 0.00 0.00 33.40 3.91
3498 9374 2.693250 TAATCAGGGCGATGCGACGG 62.693 60.000 0.00 0.00 34.63 4.79
3509 9393 1.966901 ATGCGACGGATGTAAGCCCA 61.967 55.000 0.00 0.00 41.45 5.36
3510 9394 1.448893 GCGACGGATGTAAGCCCAA 60.449 57.895 0.00 0.00 41.45 4.12
3736 10012 1.668919 CGCTAGGAACAGCAACTCGAA 60.669 52.381 0.00 0.00 41.88 3.71
3848 10128 7.359264 GCATATTAAACGCTATCCTACTGTGTG 60.359 40.741 0.00 0.00 0.00 3.82
3849 10129 3.955650 AAACGCTATCCTACTGTGTGT 57.044 42.857 0.00 0.00 0.00 3.72
3886 10166 2.711547 ACTTGTCCAGTCTTTAGGCCTT 59.288 45.455 12.58 0.00 0.00 4.35
3900 10182 0.969409 GGCCTTTGCATGCTCTCCTT 60.969 55.000 20.33 0.00 40.13 3.36
3903 10185 1.475682 CCTTTGCATGCTCTCCTTTCC 59.524 52.381 20.33 0.00 0.00 3.13
3915 10197 0.105964 TCCTTTCCCACACACACTCG 59.894 55.000 0.00 0.00 0.00 4.18
3947 10229 0.609662 GTACTAGGGGCGTGTTTGGA 59.390 55.000 0.00 0.00 0.00 3.53
3961 10243 4.429522 TGGATGCCCGCATGCAGT 62.430 61.111 18.47 0.00 46.95 4.40
3963 10245 3.589881 GATGCCCGCATGCAGTCC 61.590 66.667 19.57 3.08 45.93 3.85
3964 10246 4.429522 ATGCCCGCATGCAGTCCA 62.430 61.111 19.57 9.05 45.93 4.02
3966 10248 4.120331 GCCCGCATGCAGTCCAAC 62.120 66.667 19.57 0.00 0.00 3.77
3971 10253 2.998279 GCATGCAGTCCAACCAGGC 61.998 63.158 14.21 0.00 37.29 4.85
4002 10284 1.152943 TGCACGGCCTGTTTGGTTA 60.153 52.632 0.00 0.00 38.35 2.85
4003 10285 1.169661 TGCACGGCCTGTTTGGTTAG 61.170 55.000 0.00 0.00 38.35 2.34
4008 10290 1.250840 GGCCTGTTTGGTTAGCTGGG 61.251 60.000 0.00 0.00 38.35 4.45
4022 10304 3.636313 CTGGGCTGCATGCGGTTTG 62.636 63.158 26.79 11.60 44.05 2.93
4036 10318 2.829003 TTTGTGGCCCGCACGAAA 60.829 55.556 0.00 0.00 0.00 3.46
4094 10376 2.618260 GAATCGGCAGTTTCTCGCGC 62.618 60.000 0.00 0.00 0.00 6.86
4136 10442 2.363795 AACGCGGGAGATGGAGGA 60.364 61.111 12.47 0.00 0.00 3.71
4150 10456 3.367646 TGGAGGAGACGTCTCATAACT 57.632 47.619 38.52 28.43 44.60 2.24
4166 10476 3.465403 CTCGCCCCCACTCTCCTG 61.465 72.222 0.00 0.00 0.00 3.86
4167 10477 4.316823 TCGCCCCCACTCTCCTGT 62.317 66.667 0.00 0.00 0.00 4.00
4174 10484 2.262915 CACTCTCCTGTCACCGCC 59.737 66.667 0.00 0.00 0.00 6.13
4192 10502 1.003355 CCAGTCGCACTGTTCCCAT 60.003 57.895 13.06 0.00 44.50 4.00
4214 10524 3.151022 CCCTCTCTCCCTCACCGC 61.151 72.222 0.00 0.00 0.00 5.68
4244 10554 1.456518 CTCTCCTCCGATGGCTCCA 60.457 63.158 0.00 0.00 0.00 3.86
4284 10594 3.450115 CTCTGACCCCCGTCGACC 61.450 72.222 10.58 0.00 42.37 4.79
4293 10603 4.794439 CCGTCGACCAGCGCATCA 62.794 66.667 11.47 0.00 40.61 3.07
4297 10607 3.190849 CGACCAGCGCATCACCAG 61.191 66.667 11.47 0.00 0.00 4.00
4310 10620 3.005539 ACCAGCATCCAGGAGCGT 61.006 61.111 0.00 0.00 35.48 5.07
4312 10622 2.110967 CCAGCATCCAGGAGCGTTG 61.111 63.158 0.00 0.00 35.48 4.10
4340 10650 4.148825 CTCCAGAACTCGGGCCGG 62.149 72.222 27.98 19.08 0.00 6.13
4343 10653 4.452733 CAGAACTCGGGCCGGGAC 62.453 72.222 36.13 24.74 0.00 4.46
4358 10668 1.541310 GGGACCTGGTGTCGATGTCA 61.541 60.000 2.82 0.00 45.46 3.58
4405 10715 1.352156 CCGAACTGTGCGTCTAAGGC 61.352 60.000 7.51 0.00 0.00 4.35
4406 10716 1.674611 CGAACTGTGCGTCTAAGGCG 61.675 60.000 0.00 0.00 0.00 5.52
4443 10753 0.325602 GGGGACACGATGTTTACCCA 59.674 55.000 0.00 0.00 38.30 4.51
4459 10769 4.148825 CAGGTTCGGGCCCTCTCG 62.149 72.222 22.43 6.49 0.00 4.04
4480 10790 5.075493 TCGATGGAGGTAATACCCTACTTC 58.925 45.833 5.71 4.12 39.75 3.01
4492 10802 2.912956 ACCCTACTTCCTGCTTGATTGA 59.087 45.455 0.00 0.00 0.00 2.57
4506 10817 7.175119 CCTGCTTGATTGATCTTGATGATATGT 59.825 37.037 0.00 0.00 35.14 2.29
4531 10842 2.814280 ACAAGAGTTGACCTACCACG 57.186 50.000 0.00 0.00 0.00 4.94
4532 10843 2.313317 ACAAGAGTTGACCTACCACGA 58.687 47.619 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.438434 CCACTTCCGGACATGGCC 60.438 66.667 18.09 7.86 0.00 5.36
5 6 0.893727 AAACCACTTCCGGACATGGC 60.894 55.000 26.48 0.00 35.49 4.40
6 7 0.881118 CAAACCACTTCCGGACATGG 59.119 55.000 25.40 25.40 38.26 3.66
7 8 0.881118 CCAAACCACTTCCGGACATG 59.119 55.000 1.83 5.22 0.00 3.21
8 9 0.476771 ACCAAACCACTTCCGGACAT 59.523 50.000 1.83 0.00 0.00 3.06
9 10 1.071071 CTACCAAACCACTTCCGGACA 59.929 52.381 1.83 0.00 0.00 4.02
10 11 1.609841 CCTACCAAACCACTTCCGGAC 60.610 57.143 1.83 0.00 0.00 4.79
11 12 0.688487 CCTACCAAACCACTTCCGGA 59.312 55.000 0.00 0.00 0.00 5.14
12 13 0.322187 CCCTACCAAACCACTTCCGG 60.322 60.000 0.00 0.00 0.00 5.14
13 14 0.688487 TCCCTACCAAACCACTTCCG 59.312 55.000 0.00 0.00 0.00 4.30
14 15 1.609841 CGTCCCTACCAAACCACTTCC 60.610 57.143 0.00 0.00 0.00 3.46
15 16 1.609841 CCGTCCCTACCAAACCACTTC 60.610 57.143 0.00 0.00 0.00 3.01
16 17 0.399075 CCGTCCCTACCAAACCACTT 59.601 55.000 0.00 0.00 0.00 3.16
17 18 2.063774 CCGTCCCTACCAAACCACT 58.936 57.895 0.00 0.00 0.00 4.00
18 19 1.673337 GCCGTCCCTACCAAACCAC 60.673 63.158 0.00 0.00 0.00 4.16
19 20 2.751688 GCCGTCCCTACCAAACCA 59.248 61.111 0.00 0.00 0.00 3.67
20 21 2.045634 GGCCGTCCCTACCAAACC 60.046 66.667 0.00 0.00 0.00 3.27
21 22 2.435410 CGGCCGTCCCTACCAAAC 60.435 66.667 19.50 0.00 0.00 2.93
22 23 3.708544 CCGGCCGTCCCTACCAAA 61.709 66.667 26.12 0.00 0.00 3.28
23 24 4.700448 TCCGGCCGTCCCTACCAA 62.700 66.667 26.12 0.00 0.00 3.67
50 51 3.775654 CTCCGGCCACCTCCTCAC 61.776 72.222 2.24 0.00 0.00 3.51
51 52 2.822643 ATTCTCCGGCCACCTCCTCA 62.823 60.000 2.24 0.00 0.00 3.86
52 53 0.759436 TATTCTCCGGCCACCTCCTC 60.759 60.000 2.24 0.00 0.00 3.71
53 54 0.760945 CTATTCTCCGGCCACCTCCT 60.761 60.000 2.24 0.00 0.00 3.69
54 55 1.749033 CTATTCTCCGGCCACCTCC 59.251 63.158 2.24 0.00 0.00 4.30
55 56 1.069935 GCTATTCTCCGGCCACCTC 59.930 63.158 2.24 0.00 0.00 3.85
56 57 2.797278 CGCTATTCTCCGGCCACCT 61.797 63.158 2.24 0.00 0.00 4.00
57 58 2.280186 CGCTATTCTCCGGCCACC 60.280 66.667 2.24 0.00 0.00 4.61
58 59 2.280186 CCGCTATTCTCCGGCCAC 60.280 66.667 2.24 0.00 37.85 5.01
62 63 3.912907 ACCGCCGCTATTCTCCGG 61.913 66.667 0.00 0.00 46.94 5.14
63 64 2.658593 CACCGCCGCTATTCTCCG 60.659 66.667 0.00 0.00 0.00 4.63
64 65 2.967615 GCACCGCCGCTATTCTCC 60.968 66.667 0.00 0.00 0.00 3.71
65 66 2.967615 GGCACCGCCGCTATTCTC 60.968 66.667 0.00 0.00 39.62 2.87
95 96 3.844090 GTGCTCTCTCTCCCGCCC 61.844 72.222 0.00 0.00 0.00 6.13
96 97 4.200283 CGTGCTCTCTCTCCCGCC 62.200 72.222 0.00 0.00 0.00 6.13
97 98 4.200283 CCGTGCTCTCTCTCCCGC 62.200 72.222 0.00 0.00 0.00 6.13
98 99 1.999071 CTTCCGTGCTCTCTCTCCCG 61.999 65.000 0.00 0.00 0.00 5.14
99 100 1.813192 CTTCCGTGCTCTCTCTCCC 59.187 63.158 0.00 0.00 0.00 4.30
100 101 1.140804 GCTTCCGTGCTCTCTCTCC 59.859 63.158 0.00 0.00 0.00 3.71
101 102 1.226547 CGCTTCCGTGCTCTCTCTC 60.227 63.158 0.00 0.00 0.00 3.20
102 103 2.881389 CGCTTCCGTGCTCTCTCT 59.119 61.111 0.00 0.00 0.00 3.10
113 114 4.388499 TCCGCTCCCAACGCTTCC 62.388 66.667 0.00 0.00 0.00 3.46
114 115 2.815647 CTCCGCTCCCAACGCTTC 60.816 66.667 0.00 0.00 0.00 3.86
115 116 4.394712 CCTCCGCTCCCAACGCTT 62.395 66.667 0.00 0.00 0.00 4.68
118 119 4.452733 GTCCCTCCGCTCCCAACG 62.453 72.222 0.00 0.00 0.00 4.10
119 120 3.003763 AGTCCCTCCGCTCCCAAC 61.004 66.667 0.00 0.00 0.00 3.77
120 121 3.003173 CAGTCCCTCCGCTCCCAA 61.003 66.667 0.00 0.00 0.00 4.12
123 124 2.442272 TAGCAGTCCCTCCGCTCC 60.442 66.667 0.00 0.00 37.20 4.70
124 125 1.755008 ACTAGCAGTCCCTCCGCTC 60.755 63.158 0.00 0.00 37.20 5.03
125 126 2.055042 CACTAGCAGTCCCTCCGCT 61.055 63.158 0.00 0.00 39.80 5.52
126 127 2.286127 GACACTAGCAGTCCCTCCGC 62.286 65.000 4.92 0.00 0.00 5.54
127 128 1.810532 GACACTAGCAGTCCCTCCG 59.189 63.158 4.92 0.00 0.00 4.63
133 134 1.248785 TGTCGGGGACACTAGCAGTC 61.249 60.000 7.26 7.26 37.67 3.51
134 135 1.228769 TGTCGGGGACACTAGCAGT 60.229 57.895 0.00 0.00 37.67 4.40
135 136 1.513158 CTGTCGGGGACACTAGCAG 59.487 63.158 0.00 0.00 37.67 4.24
136 137 1.982395 CCTGTCGGGGACACTAGCA 60.982 63.158 0.00 0.00 37.67 3.49
137 138 2.893398 CCTGTCGGGGACACTAGC 59.107 66.667 0.00 0.00 37.67 3.42
138 139 2.893398 GCCTGTCGGGGACACTAG 59.107 66.667 0.00 0.00 37.67 2.57
139 140 3.066190 CGCCTGTCGGGGACACTA 61.066 66.667 0.00 0.00 45.63 2.74
158 159 3.732849 CTTGTCCCCCTCCCTGGC 61.733 72.222 0.00 0.00 0.00 4.85
159 160 3.017581 CCTTGTCCCCCTCCCTGG 61.018 72.222 0.00 0.00 0.00 4.45
160 161 3.017581 CCCTTGTCCCCCTCCCTG 61.018 72.222 0.00 0.00 0.00 4.45
164 165 4.410400 CACGCCCTTGTCCCCCTC 62.410 72.222 0.00 0.00 0.00 4.30
170 171 4.980805 TGGACGCACGCCCTTGTC 62.981 66.667 0.00 0.00 0.00 3.18
171 172 4.988598 CTGGACGCACGCCCTTGT 62.989 66.667 0.00 0.00 0.00 3.16
197 198 3.990806 TGGTGAAACGAACGCGCG 61.991 61.111 30.96 30.96 42.48 6.86
198 199 2.424640 GTGGTGAAACGAACGCGC 60.425 61.111 5.73 0.00 42.48 6.86
199 200 0.247735 TTTGTGGTGAAACGAACGCG 60.248 50.000 3.53 3.53 44.79 6.01
200 201 1.185189 GTTTGTGGTGAAACGAACGC 58.815 50.000 0.00 0.00 38.12 4.84
201 202 1.817609 GGTTTGTGGTGAAACGAACG 58.182 50.000 0.00 0.00 42.91 3.95
202 203 1.397692 TCGGTTTGTGGTGAAACGAAC 59.602 47.619 0.00 0.00 41.76 3.95
203 204 1.666700 CTCGGTTTGTGGTGAAACGAA 59.333 47.619 0.00 0.00 38.12 3.85
204 205 1.292061 CTCGGTTTGTGGTGAAACGA 58.708 50.000 0.00 0.00 38.12 3.85
205 206 0.316689 GCTCGGTTTGTGGTGAAACG 60.317 55.000 0.00 0.00 38.12 3.60
206 207 0.316689 CGCTCGGTTTGTGGTGAAAC 60.317 55.000 0.00 0.00 35.45 2.78
207 208 2.018544 CGCTCGGTTTGTGGTGAAA 58.981 52.632 0.00 0.00 0.00 2.69
208 209 2.539338 GCGCTCGGTTTGTGGTGAA 61.539 57.895 0.00 0.00 0.00 3.18
209 210 2.970324 GCGCTCGGTTTGTGGTGA 60.970 61.111 0.00 0.00 0.00 4.02
210 211 2.715864 CTTGCGCTCGGTTTGTGGTG 62.716 60.000 9.73 0.00 0.00 4.17
211 212 2.515057 TTGCGCTCGGTTTGTGGT 60.515 55.556 9.73 0.00 0.00 4.16
212 213 2.058829 AACTTGCGCTCGGTTTGTGG 62.059 55.000 9.73 0.00 0.00 4.17
213 214 0.248458 AAACTTGCGCTCGGTTTGTG 60.248 50.000 19.08 0.33 32.84 3.33
214 215 0.248458 CAAACTTGCGCTCGGTTTGT 60.248 50.000 27.80 10.26 42.46 2.83
215 216 0.934436 CCAAACTTGCGCTCGGTTTG 60.934 55.000 28.50 28.50 45.14 2.93
216 217 1.358759 CCAAACTTGCGCTCGGTTT 59.641 52.632 9.73 13.79 34.10 3.27
217 218 2.551912 CCCAAACTTGCGCTCGGTT 61.552 57.895 9.73 8.16 0.00 4.44
218 219 2.978010 CCCAAACTTGCGCTCGGT 60.978 61.111 9.73 1.34 0.00 4.69
219 220 3.737172 CCCCAAACTTGCGCTCGG 61.737 66.667 9.73 0.61 0.00 4.63
220 221 4.404654 GCCCCAAACTTGCGCTCG 62.405 66.667 9.73 1.27 0.00 5.03
221 222 4.404654 CGCCCCAAACTTGCGCTC 62.405 66.667 9.73 0.00 41.95 5.03
225 226 4.986708 TCCCCGCCCCAAACTTGC 62.987 66.667 0.00 0.00 0.00 4.01
226 227 2.037208 ATCCCCGCCCCAAACTTG 59.963 61.111 0.00 0.00 0.00 3.16
227 228 2.037208 CATCCCCGCCCCAAACTT 59.963 61.111 0.00 0.00 0.00 2.66
228 229 4.060667 CCATCCCCGCCCCAAACT 62.061 66.667 0.00 0.00 0.00 2.66
235 236 3.631952 TTTTCGACCCATCCCCGCC 62.632 63.158 0.00 0.00 0.00 6.13
236 237 2.045731 TTTTCGACCCATCCCCGC 60.046 61.111 0.00 0.00 0.00 6.13
237 238 3.899395 GTTTTCGACCCATCCCCG 58.101 61.111 0.00 0.00 0.00 5.73
255 256 1.014352 CAAATGTCCGGATTCCGTCC 58.986 55.000 22.83 13.25 46.80 4.79
256 257 1.664151 GACAAATGTCCGGATTCCGTC 59.336 52.381 22.83 15.53 46.80 4.79
257 258 1.734163 GACAAATGTCCGGATTCCGT 58.266 50.000 22.83 1.21 46.80 4.69
267 268 1.068541 GGCCTCAAACGGACAAATGTC 60.069 52.381 4.96 4.96 44.04 3.06
268 269 0.958822 GGCCTCAAACGGACAAATGT 59.041 50.000 0.00 0.00 30.13 2.71
269 270 0.109781 CGGCCTCAAACGGACAAATG 60.110 55.000 0.00 0.00 30.13 2.32
270 271 1.862602 GCGGCCTCAAACGGACAAAT 61.863 55.000 0.00 0.00 30.13 2.32
271 272 2.548295 GCGGCCTCAAACGGACAAA 61.548 57.895 0.00 0.00 30.13 2.83
272 273 2.975799 GCGGCCTCAAACGGACAA 60.976 61.111 0.00 0.00 30.13 3.18
293 294 4.891727 ACGAATAGCGCGGCCCAG 62.892 66.667 8.83 0.00 46.04 4.45
294 295 4.460683 AACGAATAGCGCGGCCCA 62.461 61.111 8.83 0.00 46.04 5.36
295 296 3.637030 GAACGAATAGCGCGGCCC 61.637 66.667 8.83 0.00 46.04 5.80
296 297 3.984765 CGAACGAATAGCGCGGCC 61.985 66.667 8.83 0.00 46.04 6.13
297 298 2.287637 AAACGAACGAATAGCGCGGC 62.288 55.000 8.83 0.00 46.04 6.53
298 299 0.094046 AAAACGAACGAATAGCGCGG 59.906 50.000 8.83 0.00 46.04 6.46
299 300 2.339096 GTAAAACGAACGAATAGCGCG 58.661 47.619 0.00 0.00 46.04 6.86
300 301 2.535534 GGGTAAAACGAACGAATAGCGC 60.536 50.000 0.00 0.00 46.04 5.92
302 303 3.002102 TGGGGTAAAACGAACGAATAGC 58.998 45.455 0.14 1.26 0.00 2.97
303 304 5.049543 TGTTTGGGGTAAAACGAACGAATAG 60.050 40.000 0.14 0.00 41.92 1.73
304 305 4.818546 TGTTTGGGGTAAAACGAACGAATA 59.181 37.500 0.14 0.00 41.92 1.75
305 306 3.631227 TGTTTGGGGTAAAACGAACGAAT 59.369 39.130 0.14 0.00 41.92 3.34
306 307 3.012518 TGTTTGGGGTAAAACGAACGAA 58.987 40.909 0.14 0.00 41.92 3.85
307 308 2.613133 CTGTTTGGGGTAAAACGAACGA 59.387 45.455 0.14 0.00 41.92 3.85
308 309 2.613133 TCTGTTTGGGGTAAAACGAACG 59.387 45.455 0.00 0.00 41.92 3.95
309 310 3.546616 CGTCTGTTTGGGGTAAAACGAAC 60.547 47.826 0.00 0.00 41.92 3.95
310 311 2.613133 CGTCTGTTTGGGGTAAAACGAA 59.387 45.455 0.00 0.00 41.92 3.85
311 312 2.211806 CGTCTGTTTGGGGTAAAACGA 58.788 47.619 0.00 0.00 41.92 3.85
312 313 1.264826 CCGTCTGTTTGGGGTAAAACG 59.735 52.381 0.00 0.00 41.92 3.60
313 314 1.610038 CCCGTCTGTTTGGGGTAAAAC 59.390 52.381 0.00 0.00 42.05 2.43
314 315 1.493871 TCCCGTCTGTTTGGGGTAAAA 59.506 47.619 0.00 0.00 46.03 1.52
315 316 1.138568 TCCCGTCTGTTTGGGGTAAA 58.861 50.000 0.00 0.00 46.03 2.01
316 317 0.397564 GTCCCGTCTGTTTGGGGTAA 59.602 55.000 0.00 0.00 46.03 2.85
317 318 1.482748 GGTCCCGTCTGTTTGGGGTA 61.483 60.000 0.00 0.00 46.03 3.69
318 319 2.826003 GGTCCCGTCTGTTTGGGGT 61.826 63.158 0.00 0.00 46.03 4.95
319 320 2.033602 GGTCCCGTCTGTTTGGGG 59.966 66.667 0.00 0.00 46.03 4.96
321 322 2.358247 CCGGTCCCGTCTGTTTGG 60.358 66.667 4.84 0.00 37.81 3.28
322 323 1.666872 GTCCGGTCCCGTCTGTTTG 60.667 63.158 0.00 0.00 37.81 2.93
323 324 2.095978 CTGTCCGGTCCCGTCTGTTT 62.096 60.000 0.00 0.00 37.81 2.83
324 325 2.522436 TGTCCGGTCCCGTCTGTT 60.522 61.111 0.00 0.00 37.81 3.16
325 326 2.989824 CTGTCCGGTCCCGTCTGT 60.990 66.667 0.00 0.00 37.81 3.41
326 327 3.760035 CCTGTCCGGTCCCGTCTG 61.760 72.222 0.00 2.29 37.81 3.51
327 328 1.929860 TATCCTGTCCGGTCCCGTCT 61.930 60.000 0.00 0.00 37.81 4.18
328 329 1.453762 CTATCCTGTCCGGTCCCGTC 61.454 65.000 0.00 0.00 37.81 4.79
329 330 1.455217 CTATCCTGTCCGGTCCCGT 60.455 63.158 0.00 0.00 37.81 5.28
330 331 2.201022 CCTATCCTGTCCGGTCCCG 61.201 68.421 0.00 0.00 39.44 5.14
331 332 1.837499 CCCTATCCTGTCCGGTCCC 60.837 68.421 0.00 0.00 0.00 4.46
332 333 0.690077 AACCCTATCCTGTCCGGTCC 60.690 60.000 0.00 0.00 0.00 4.46
333 334 0.464452 CAACCCTATCCTGTCCGGTC 59.536 60.000 0.00 0.00 0.00 4.79
334 335 1.623542 GCAACCCTATCCTGTCCGGT 61.624 60.000 0.00 0.00 0.00 5.28
335 336 1.146263 GCAACCCTATCCTGTCCGG 59.854 63.158 0.00 0.00 0.00 5.14
336 337 1.227263 CGCAACCCTATCCTGTCCG 60.227 63.158 0.00 0.00 0.00 4.79
337 338 1.523938 GCGCAACCCTATCCTGTCC 60.524 63.158 0.30 0.00 0.00 4.02
338 339 1.883084 CGCGCAACCCTATCCTGTC 60.883 63.158 8.75 0.00 0.00 3.51
339 340 2.186903 CGCGCAACCCTATCCTGT 59.813 61.111 8.75 0.00 0.00 4.00
340 341 2.588877 CCGCGCAACCCTATCCTG 60.589 66.667 8.75 0.00 0.00 3.86
341 342 3.081409 ACCGCGCAACCCTATCCT 61.081 61.111 8.75 0.00 0.00 3.24
342 343 2.895372 CACCGCGCAACCCTATCC 60.895 66.667 8.75 0.00 0.00 2.59
343 344 2.895372 CCACCGCGCAACCCTATC 60.895 66.667 8.75 0.00 0.00 2.08
344 345 3.385749 CTCCACCGCGCAACCCTAT 62.386 63.158 8.75 0.00 0.00 2.57
345 346 4.077184 CTCCACCGCGCAACCCTA 62.077 66.667 8.75 0.00 0.00 3.53
348 349 4.025401 CAACTCCACCGCGCAACC 62.025 66.667 8.75 0.00 0.00 3.77
349 350 4.025401 CCAACTCCACCGCGCAAC 62.025 66.667 8.75 0.00 0.00 4.17
353 354 3.599285 TTAGCCCAACTCCACCGCG 62.599 63.158 0.00 0.00 0.00 6.46
354 355 1.745489 CTTAGCCCAACTCCACCGC 60.745 63.158 0.00 0.00 0.00 5.68
355 356 0.899720 TACTTAGCCCAACTCCACCG 59.100 55.000 0.00 0.00 0.00 4.94
356 357 1.907255 AGTACTTAGCCCAACTCCACC 59.093 52.381 0.00 0.00 0.00 4.61
357 358 3.007614 TCAAGTACTTAGCCCAACTCCAC 59.992 47.826 8.04 0.00 0.00 4.02
358 359 3.007614 GTCAAGTACTTAGCCCAACTCCA 59.992 47.826 8.04 0.00 0.00 3.86
359 360 3.007614 TGTCAAGTACTTAGCCCAACTCC 59.992 47.826 8.04 0.00 0.00 3.85
360 361 4.246458 CTGTCAAGTACTTAGCCCAACTC 58.754 47.826 8.04 0.00 0.00 3.01
361 362 3.008049 CCTGTCAAGTACTTAGCCCAACT 59.992 47.826 8.04 0.00 0.00 3.16
362 363 3.335579 CCTGTCAAGTACTTAGCCCAAC 58.664 50.000 8.04 1.35 0.00 3.77
363 364 2.304761 CCCTGTCAAGTACTTAGCCCAA 59.695 50.000 8.04 0.00 0.00 4.12
364 365 1.906574 CCCTGTCAAGTACTTAGCCCA 59.093 52.381 8.04 2.08 0.00 5.36
365 366 1.209747 CCCCTGTCAAGTACTTAGCCC 59.790 57.143 8.04 0.00 0.00 5.19
366 367 2.093606 GTCCCCTGTCAAGTACTTAGCC 60.094 54.545 8.04 0.00 0.00 3.93
367 368 2.416972 CGTCCCCTGTCAAGTACTTAGC 60.417 54.545 8.04 4.80 0.00 3.09
368 369 2.824341 ACGTCCCCTGTCAAGTACTTAG 59.176 50.000 8.04 2.22 0.00 2.18
369 370 2.559668 CACGTCCCCTGTCAAGTACTTA 59.440 50.000 8.04 0.00 0.00 2.24
370 371 1.343465 CACGTCCCCTGTCAAGTACTT 59.657 52.381 1.12 1.12 0.00 2.24
371 372 0.966920 CACGTCCCCTGTCAAGTACT 59.033 55.000 0.00 0.00 0.00 2.73
372 373 0.963962 TCACGTCCCCTGTCAAGTAC 59.036 55.000 0.00 0.00 0.00 2.73
373 374 1.707106 TTCACGTCCCCTGTCAAGTA 58.293 50.000 0.00 0.00 0.00 2.24
374 375 1.056660 ATTCACGTCCCCTGTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
375 376 1.442769 CATTCACGTCCCCTGTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
376 377 0.036164 CCATTCACGTCCCCTGTCAA 59.964 55.000 0.00 0.00 0.00 3.18
377 378 0.834261 TCCATTCACGTCCCCTGTCA 60.834 55.000 0.00 0.00 0.00 3.58
378 379 0.108138 CTCCATTCACGTCCCCTGTC 60.108 60.000 0.00 0.00 0.00 3.51
379 380 1.983224 CTCCATTCACGTCCCCTGT 59.017 57.895 0.00 0.00 0.00 4.00
380 381 1.450312 GCTCCATTCACGTCCCCTG 60.450 63.158 0.00 0.00 0.00 4.45
381 382 1.274703 ATGCTCCATTCACGTCCCCT 61.275 55.000 0.00 0.00 0.00 4.79
382 383 0.815615 GATGCTCCATTCACGTCCCC 60.816 60.000 0.00 0.00 0.00 4.81
383 384 0.179000 AGATGCTCCATTCACGTCCC 59.821 55.000 0.00 0.00 0.00 4.46
384 385 2.101582 AGTAGATGCTCCATTCACGTCC 59.898 50.000 0.00 0.00 0.00 4.79
385 386 3.444703 AGTAGATGCTCCATTCACGTC 57.555 47.619 0.00 0.00 0.00 4.34
386 387 3.068307 GGTAGTAGATGCTCCATTCACGT 59.932 47.826 0.00 0.00 0.00 4.49
507 528 0.317603 GACGACGCGTATGGTATGCT 60.318 55.000 13.97 0.00 41.37 3.79
512 533 1.026182 TAGTGGACGACGCGTATGGT 61.026 55.000 13.97 11.21 41.37 3.55
514 535 2.568100 GTATAGTGGACGACGCGTATG 58.432 52.381 13.97 11.09 41.37 2.39
520 541 4.603216 GGCGTATAGTGGACGACG 57.397 61.111 0.00 0.00 42.98 5.12
522 543 1.153188 TCCGGCGTATAGTGGACGA 60.153 57.895 6.01 0.00 42.98 4.20
688 730 3.809832 CAGTGTTTACAGTTGGAGTCAGG 59.190 47.826 0.00 0.00 0.00 3.86
963 1007 3.647771 GGTGGGTGGGGGTGAGAC 61.648 72.222 0.00 0.00 0.00 3.36
966 1010 3.503839 GTTGGTGGGTGGGGGTGA 61.504 66.667 0.00 0.00 0.00 4.02
968 1012 3.828023 GTGTTGGTGGGTGGGGGT 61.828 66.667 0.00 0.00 0.00 4.95
990 1034 3.082579 GCGGGGTCTGAAGAGCGAT 62.083 63.158 3.60 0.00 43.03 4.58
991 1035 3.760035 GCGGGGTCTGAAGAGCGA 61.760 66.667 3.60 0.00 43.03 4.93
992 1036 4.821589 GGCGGGGTCTGAAGAGCG 62.822 72.222 3.60 0.00 43.03 5.03
993 1037 4.821589 CGGCGGGGTCTGAAGAGC 62.822 72.222 0.00 0.78 41.50 4.09
997 1041 4.689549 TCTCCGGCGGGGTCTGAA 62.690 66.667 27.52 1.94 37.00 3.02
1213 1264 2.183858 GAGAAAAACGGGAGTGGCGC 62.184 60.000 0.00 0.00 46.69 6.53
1224 1275 3.821600 GAGGGGGAAGAACAGAGAAAAAC 59.178 47.826 0.00 0.00 0.00 2.43
1228 1279 1.267121 CGAGGGGGAAGAACAGAGAA 58.733 55.000 0.00 0.00 0.00 2.87
1229 1280 1.258445 GCGAGGGGGAAGAACAGAGA 61.258 60.000 0.00 0.00 0.00 3.10
1230 1281 1.219393 GCGAGGGGGAAGAACAGAG 59.781 63.158 0.00 0.00 0.00 3.35
1234 1285 1.318158 TACGAGCGAGGGGGAAGAAC 61.318 60.000 0.00 0.00 0.00 3.01
1240 1291 1.325355 TTAATCTACGAGCGAGGGGG 58.675 55.000 0.00 0.00 0.00 5.40
1253 1308 7.318141 CACAAACCAAGCATTCTCATTAATCT 58.682 34.615 0.00 0.00 0.00 2.40
1274 1332 2.350895 CCGACCCCTGATGCACAA 59.649 61.111 0.00 0.00 0.00 3.33
1279 1337 4.873129 CGTCGCCGACCCCTGATG 62.873 72.222 12.26 0.00 35.63 3.07
1344 1402 4.508128 GGCGTCATCTCGGGCGAA 62.508 66.667 0.00 0.00 0.00 4.70
1968 2026 0.380378 GCTTGAGCGTCTCGAGATCT 59.620 55.000 19.90 18.06 42.88 2.75
2246 2304 2.687805 CGCTTGTCCGGAGAGACGA 61.688 63.158 17.12 0.52 39.77 4.20
2341 2399 1.194997 GTCGTCGTCGGGAGATAGATG 59.805 57.143 1.55 0.00 43.27 2.90
2481 4513 1.234821 AAACGTTGCACGATGTCCAT 58.765 45.000 0.00 0.00 46.05 3.41
2482 4514 1.003331 GAAAACGTTGCACGATGTCCA 60.003 47.619 0.00 0.00 46.05 4.02
2770 4824 2.497675 TCGGGAAAGGACAGAGAGAATG 59.502 50.000 0.00 0.00 0.00 2.67
2771 4825 2.763448 CTCGGGAAAGGACAGAGAGAAT 59.237 50.000 0.00 0.00 0.00 2.40
2772 4826 2.171840 CTCGGGAAAGGACAGAGAGAA 58.828 52.381 0.00 0.00 0.00 2.87
2873 4930 1.111116 TCCGGTCCGACAAACAGACT 61.111 55.000 14.39 0.00 0.00 3.24
2945 5010 3.545574 TGCTGCCACGTGTCCTCA 61.546 61.111 15.65 4.32 0.00 3.86
3110 5181 1.872679 GTCGTTCAGATCGTCGGCC 60.873 63.158 0.00 0.00 0.00 6.13
3112 5183 0.109458 TTGGTCGTTCAGATCGTCGG 60.109 55.000 0.88 0.00 30.89 4.79
3203 5274 3.260483 CGCTCGATCTGCAGCACC 61.260 66.667 9.47 0.00 35.15 5.01
3327 5398 7.072263 AGATTTAGATTAGACATGGGACTGG 57.928 40.000 0.00 0.00 0.00 4.00
3418 7660 4.714308 CAGAAAGGAGGAGTACAAGAGGAT 59.286 45.833 0.00 0.00 0.00 3.24
3462 9331 6.608002 CCCTGATTACTCCTAAGAACAGTACT 59.392 42.308 0.00 0.00 0.00 2.73
3465 9334 4.162509 GCCCTGATTACTCCTAAGAACAGT 59.837 45.833 0.00 0.00 0.00 3.55
3469 9345 3.638860 TCGCCCTGATTACTCCTAAGAA 58.361 45.455 0.00 0.00 0.00 2.52
3471 9347 3.862642 GCATCGCCCTGATTACTCCTAAG 60.863 52.174 0.00 0.00 34.13 2.18
3472 9348 2.037251 GCATCGCCCTGATTACTCCTAA 59.963 50.000 0.00 0.00 34.13 2.69
3473 9349 1.618837 GCATCGCCCTGATTACTCCTA 59.381 52.381 0.00 0.00 34.13 2.94
3476 9352 0.032130 TCGCATCGCCCTGATTACTC 59.968 55.000 0.00 0.00 34.13 2.59
3483 9359 4.592192 ATCCGTCGCATCGCCCTG 62.592 66.667 0.00 0.00 0.00 4.45
3493 9369 1.087771 GGTTGGGCTTACATCCGTCG 61.088 60.000 0.00 0.00 0.00 5.12
3498 9374 4.402155 TCATTCATTGGTTGGGCTTACATC 59.598 41.667 0.00 0.00 0.00 3.06
3499 9375 4.352009 TCATTCATTGGTTGGGCTTACAT 58.648 39.130 0.00 0.00 0.00 2.29
3509 9393 9.727859 TTTTCATTCATTCATCATTCATTGGTT 57.272 25.926 0.00 0.00 0.00 3.67
3510 9394 9.899661 ATTTTCATTCATTCATCATTCATTGGT 57.100 25.926 0.00 0.00 0.00 3.67
3736 10012 6.075949 TGTTGATACAGGGACTCTACTAGT 57.924 41.667 0.00 0.00 42.80 2.57
3886 10166 0.405198 TGGGAAAGGAGAGCATGCAA 59.595 50.000 21.98 0.00 0.00 4.08
3900 10182 0.682292 TATGCGAGTGTGTGTGGGAA 59.318 50.000 0.00 0.00 0.00 3.97
3903 10185 3.002791 AGAATTATGCGAGTGTGTGTGG 58.997 45.455 0.00 0.00 0.00 4.17
3915 10197 4.515567 GCCCCTAGTACACAAGAATTATGC 59.484 45.833 0.00 0.00 0.00 3.14
3947 10229 3.942377 TTGGACTGCATGCGGGCAT 62.942 57.895 32.89 11.49 43.97 4.40
3952 10234 2.693762 CCTGGTTGGACTGCATGCG 61.694 63.158 14.09 10.50 38.35 4.73
3987 10269 0.889186 CAGCTAACCAAACAGGCCGT 60.889 55.000 0.00 0.00 43.14 5.68
3992 10274 0.883833 CAGCCCAGCTAACCAAACAG 59.116 55.000 0.00 0.00 36.40 3.16
4008 10290 2.431260 CCACAAACCGCATGCAGC 60.431 61.111 19.57 0.00 40.87 5.25
4022 10304 1.508808 TTAAGTTTCGTGCGGGCCAC 61.509 55.000 4.39 0.00 41.15 5.01
4034 10316 0.598065 CTGCGGGCTGCTTTAAGTTT 59.402 50.000 20.66 0.00 46.63 2.66
4036 10318 2.335712 GCTGCGGGCTGCTTTAAGT 61.336 57.895 20.66 0.00 46.63 2.24
4120 10426 2.835431 CTCCTCCATCTCCCGCGT 60.835 66.667 4.92 0.00 0.00 6.01
4130 10436 3.280295 GAGTTATGAGACGTCTCCTCCA 58.720 50.000 36.01 22.38 42.20 3.86
4136 10442 0.739561 GGGCGAGTTATGAGACGTCT 59.260 55.000 20.18 20.18 0.00 4.18
4150 10456 4.316823 ACAGGAGAGTGGGGGCGA 62.317 66.667 0.00 0.00 0.00 5.54
4192 10502 2.309504 TGAGGGAGAGAGGGAGCGA 61.310 63.158 0.00 0.00 0.00 4.93
4214 10524 2.018086 AGGAGAGGAGAGGGAGGGG 61.018 68.421 0.00 0.00 0.00 4.79
4228 10538 2.801631 GGTGGAGCCATCGGAGGAG 61.802 68.421 0.00 0.00 37.17 3.69
4269 10579 3.760035 CTGGTCGACGGGGGTCAG 61.760 72.222 9.92 6.17 0.00 3.51
4284 10594 2.713770 GATGCTGGTGATGCGCTG 59.286 61.111 9.73 0.00 0.00 5.18
4287 10597 2.184830 CCTGGATGCTGGTGATGCG 61.185 63.158 1.65 0.00 0.00 4.73
4293 10603 2.596851 AACGCTCCTGGATGCTGGT 61.597 57.895 9.94 5.27 0.00 4.00
4297 10607 3.512516 GCCAACGCTCCTGGATGC 61.513 66.667 0.00 2.39 35.85 3.91
4310 10620 2.853542 TGGAGCCTGACCAGCCAA 60.854 61.111 0.00 0.00 33.22 4.52
4316 10626 1.216710 CGAGTTCTGGAGCCTGACC 59.783 63.158 0.00 0.00 0.00 4.02
4318 10628 1.984570 CCCGAGTTCTGGAGCCTGA 60.985 63.158 0.00 0.00 0.00 3.86
4340 10650 0.320374 TTGACATCGACACCAGGTCC 59.680 55.000 0.00 0.00 43.95 4.46
4341 10651 2.163818 TTTGACATCGACACCAGGTC 57.836 50.000 0.00 0.00 43.36 3.85
4342 10652 2.218603 GTTTTGACATCGACACCAGGT 58.781 47.619 0.00 0.00 0.00 4.00
4343 10653 1.535462 GGTTTTGACATCGACACCAGG 59.465 52.381 0.00 0.00 31.78 4.45
4344 10654 1.194547 CGGTTTTGACATCGACACCAG 59.805 52.381 5.50 0.00 31.06 4.00
4345 10655 1.222300 CGGTTTTGACATCGACACCA 58.778 50.000 5.50 0.00 31.06 4.17
4353 10663 0.035439 AGATCCGCCGGTTTTGACAT 60.035 50.000 1.63 0.00 0.00 3.06
4358 10668 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
4405 10715 1.227263 CGCCTCCTGTTACCATCCG 60.227 63.158 0.00 0.00 0.00 4.18
4406 10716 1.146263 CCGCCTCCTGTTACCATCC 59.854 63.158 0.00 0.00 0.00 3.51
4443 10753 3.680920 ATCGAGAGGGCCCGAACCT 62.681 63.158 18.44 12.55 42.18 3.50
4459 10769 5.246429 CAGGAAGTAGGGTATTACCTCCATC 59.754 48.000 16.39 8.41 42.09 3.51
4480 10790 7.175119 ACATATCATCAAGATCAATCAAGCAGG 59.825 37.037 0.00 0.00 38.19 4.85
4506 10817 6.570957 CGTGGTAGGTCAACTCTTGTAATACA 60.571 42.308 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.