Multiple sequence alignment - TraesCS7D01G444200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G444200 chr7D 100.000 4273 0 0 1 4273 565196911 565201183 0.000000e+00 7891
1 TraesCS7D01G444200 chr7D 92.583 391 27 2 3670 4059 5667818 5667429 1.040000e-155 560
2 TraesCS7D01G444200 chr7A 90.992 3741 152 66 22 3672 651197034 651200679 0.000000e+00 4870
3 TraesCS7D01G444200 chr7A 93.925 214 8 3 4062 4271 651201053 651201265 6.890000e-83 318
4 TraesCS7D01G444200 chr7B 92.366 3419 119 61 325 3672 615374509 615377856 0.000000e+00 4737
5 TraesCS7D01G444200 chr7B 88.614 202 12 2 4083 4273 615378550 615378751 7.140000e-58 235
6 TraesCS7D01G444200 chr4D 94.574 387 20 1 3674 4059 401952162 401951776 7.910000e-167 597
7 TraesCS7D01G444200 chr6D 92.784 388 27 1 3670 4056 9384595 9384982 1.040000e-155 560
8 TraesCS7D01G444200 chr3D 92.248 387 24 2 3674 4059 67073212 67072831 1.040000e-150 544
9 TraesCS7D01G444200 chr2B 91.795 390 29 3 3670 4056 107562679 107563068 1.350000e-149 540
10 TraesCS7D01G444200 chr2B 91.003 389 34 1 3669 4056 683386544 683386932 1.360000e-144 523
11 TraesCS7D01G444200 chr2B 90.000 390 31 4 3668 4056 683592400 683592782 8.250000e-137 497
12 TraesCS7D01G444200 chr6B 91.538 390 31 2 3671 4059 147685571 147685959 1.750000e-148 536
13 TraesCS7D01G444200 chr3B 89.717 389 38 2 3672 4059 819268408 819268795 2.970000e-136 496


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G444200 chr7D 565196911 565201183 4272 False 7891 7891 100.0000 1 4273 1 chr7D.!!$F1 4272
1 TraesCS7D01G444200 chr7A 651197034 651201265 4231 False 2594 4870 92.4585 22 4271 2 chr7A.!!$F1 4249
2 TraesCS7D01G444200 chr7B 615374509 615378751 4242 False 2486 4737 90.4900 325 4273 2 chr7B.!!$F1 3948

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 678 0.174162 AATACCAGTGGCGTACCGTC 59.826 55.0 9.78 0.0 39.70 4.79 F
648 687 0.179045 GGCGTACCGTCCTACTCCTA 60.179 60.0 0.00 0.0 0.00 2.94 F
1629 1686 0.324738 TCGAGGAGGTGCTCAAGGAT 60.325 55.0 0.00 0.0 31.08 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2475 2554 0.179189 CGAAATCTTGGTTCGCAGGC 60.179 55.0 0.0 0.0 41.13 4.85 R
2593 2672 5.704978 TCTGTTTTCATGTCCAAATCATCGA 59.295 36.0 0.0 0.0 0.00 3.59 R
3334 3425 0.957395 CATGACACTGACACCCTGCC 60.957 60.0 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.459232 CTATGATCCGGTCTTTGCAGA 57.541 47.619 0.00 0.00 0.00 4.26
31 32 0.322906 CTTTGCAGAACCTCCCTCCC 60.323 60.000 0.00 0.00 0.00 4.30
47 48 4.525100 TCCCTCCCAAGGTTTTTAATTTCG 59.475 41.667 0.00 0.00 41.59 3.46
48 49 4.525100 CCCTCCCAAGGTTTTTAATTTCGA 59.475 41.667 0.00 0.00 41.59 3.71
202 204 3.348647 TGAATCTGGCTCGGAATTTCA 57.651 42.857 0.00 0.00 0.00 2.69
220 222 8.463607 GGAATTTCAGGGTTACAAATATTTCGA 58.536 33.333 0.00 0.00 0.00 3.71
221 223 9.285770 GAATTTCAGGGTTACAAATATTTCGAC 57.714 33.333 0.00 0.00 0.00 4.20
229 231 1.673920 CAAATATTTCGACCCCCACCG 59.326 52.381 0.00 0.00 0.00 4.94
231 233 1.205966 ATATTTCGACCCCCACCGAA 58.794 50.000 0.00 0.00 42.17 4.30
235 237 1.205966 TTCGACCCCCACCGAAATAT 58.794 50.000 0.00 0.00 41.13 1.28
292 303 3.671008 TGTGCGCGGGTCTTATTATAT 57.329 42.857 8.83 0.00 0.00 0.86
398 409 0.669619 AACCCTTTTAACAACGCGGG 59.330 50.000 12.47 4.46 37.70 6.13
434 445 3.431658 CCTGGGGGAAATGGCTCT 58.568 61.111 0.00 0.00 33.58 4.09
435 446 1.228510 CCTGGGGGAAATGGCTCTC 59.771 63.158 0.00 0.00 33.58 3.20
585 596 7.534282 GCTTCTAGATTCCCAGAAAAAGAAAG 58.466 38.462 0.00 0.00 30.68 2.62
631 670 3.053831 ACACAGTACAATACCAGTGGC 57.946 47.619 9.78 0.00 38.65 5.01
632 671 1.999735 CACAGTACAATACCAGTGGCG 59.000 52.381 9.78 0.00 33.90 5.69
633 672 1.621814 ACAGTACAATACCAGTGGCGT 59.378 47.619 9.78 4.18 0.00 5.68
634 673 2.827322 ACAGTACAATACCAGTGGCGTA 59.173 45.455 9.78 3.13 0.00 4.42
635 674 3.184541 CAGTACAATACCAGTGGCGTAC 58.815 50.000 9.78 15.02 0.00 3.67
639 678 0.174162 AATACCAGTGGCGTACCGTC 59.826 55.000 9.78 0.00 39.70 4.79
648 687 0.179045 GGCGTACCGTCCTACTCCTA 60.179 60.000 0.00 0.00 0.00 2.94
650 689 1.743772 GCGTACCGTCCTACTCCTACA 60.744 57.143 0.00 0.00 0.00 2.74
715 754 2.550101 GGAGCTCGCATTCATGGCC 61.550 63.158 7.83 0.00 0.00 5.36
733 772 2.979678 GGCCCCTTTCAGATGGTAGATA 59.020 50.000 0.00 0.00 0.00 1.98
840 880 1.410365 CGACACTCCTCACCTCCCTAT 60.410 57.143 0.00 0.00 0.00 2.57
924 978 0.381089 TTCCTCGTCTAGCTTAGCGC 59.619 55.000 0.00 0.00 39.57 5.92
954 1008 4.779733 GGTCGCCAGGGAGAGGGA 62.780 72.222 0.00 0.00 0.00 4.20
996 1053 2.506065 TCGAAGAGGAGGCTAAGGC 58.494 57.895 0.00 0.00 37.82 4.35
997 1054 1.066587 CGAAGAGGAGGCTAAGGCG 59.933 63.158 0.00 0.00 39.81 5.52
998 1055 1.227409 GAAGAGGAGGCTAAGGCGC 60.227 63.158 0.00 0.00 39.81 6.53
1629 1686 0.324738 TCGAGGAGGTGCTCAAGGAT 60.325 55.000 0.00 0.00 31.08 3.24
2144 2201 9.745018 GATTAATCCATCCATTCCAATTCTAGA 57.255 33.333 3.92 0.00 0.00 2.43
2186 2244 6.863275 TCTTTGACATCATTAACTCTAGCGA 58.137 36.000 0.00 0.00 0.00 4.93
2189 2247 5.961272 TGACATCATTAACTCTAGCGACAA 58.039 37.500 0.00 0.00 0.00 3.18
2227 2285 6.751259 GCAAATTGCTTACTACGAAATTTGG 58.249 36.000 11.19 0.00 43.49 3.28
2290 2369 4.591321 TTTGGCATTACCCTTGAGAGAT 57.409 40.909 0.00 0.00 37.83 2.75
2304 2383 5.426504 CTTGAGAGATGTCCACTTTAGCAT 58.573 41.667 0.00 0.00 0.00 3.79
2315 2394 6.658816 TGTCCACTTTAGCATTATGACACATT 59.341 34.615 0.00 0.00 0.00 2.71
2319 2398 7.012704 CCACTTTAGCATTATGACACATTAGCT 59.987 37.037 0.00 0.00 35.06 3.32
2420 2499 1.003580 AGTGTCACACCATCACCATCC 59.996 52.381 3.66 0.00 34.49 3.51
2475 2554 2.465860 TTAAGGACCATCACCACACG 57.534 50.000 0.00 0.00 0.00 4.49
2492 2571 0.889186 ACGCCTGCGAACCAAGATTT 60.889 50.000 19.52 0.00 42.83 2.17
2586 2665 3.159213 AGCTGGTGTCCAAATGATCAA 57.841 42.857 0.00 0.00 30.80 2.57
2591 2670 5.735354 GCTGGTGTCCAAATGATCAATCATC 60.735 44.000 0.00 0.00 46.22 2.92
2684 2763 0.249868 TGAAAGCGACCCACAGAGTG 60.250 55.000 0.00 0.00 0.00 3.51
2688 2767 1.153745 GCGACCCACAGAGTGCTAG 60.154 63.158 0.00 0.00 31.34 3.42
2694 2773 2.497675 ACCCACAGAGTGCTAGTACATG 59.502 50.000 13.75 13.05 31.34 3.21
2740 2820 1.303561 CCAGCAGCCCAGCACTTTA 60.304 57.895 0.00 0.00 36.85 1.85
3325 3416 0.029834 GCGTACCACGTCACGGATAT 59.970 55.000 0.35 0.00 44.73 1.63
3337 3428 4.615588 TCACGGATATGTGATTATGGCA 57.384 40.909 0.00 0.00 43.62 4.92
3341 3432 3.307691 CGGATATGTGATTATGGCAGGGT 60.308 47.826 0.00 0.00 0.00 4.34
3342 3433 4.012374 GGATATGTGATTATGGCAGGGTG 58.988 47.826 0.00 0.00 0.00 4.61
3343 3434 4.507335 GGATATGTGATTATGGCAGGGTGT 60.507 45.833 0.00 0.00 0.00 4.16
3344 3435 2.418368 TGTGATTATGGCAGGGTGTC 57.582 50.000 0.00 0.00 0.00 3.67
3345 3436 1.632920 TGTGATTATGGCAGGGTGTCA 59.367 47.619 0.00 0.00 35.91 3.58
3404 3496 1.291877 GCGTGACATCGGTTCTGCTT 61.292 55.000 0.00 0.00 0.00 3.91
3406 3498 0.166814 GTGACATCGGTTCTGCTTGC 59.833 55.000 0.00 0.00 0.00 4.01
3407 3499 0.250252 TGACATCGGTTCTGCTTGCA 60.250 50.000 0.00 0.00 0.00 4.08
3440 3532 1.684450 TGGACATCATGATGCAATGCC 59.316 47.619 31.17 23.48 42.39 4.40
3447 3539 1.754803 CATGATGCAATGCCACCTCTT 59.245 47.619 1.53 0.00 0.00 2.85
3448 3540 1.466856 TGATGCAATGCCACCTCTTC 58.533 50.000 1.53 0.00 0.00 2.87
3466 3560 6.823689 ACCTCTTCAATTTTAGCGTCATGTAT 59.176 34.615 0.00 0.00 0.00 2.29
3499 3601 6.712241 TTTTTCTCTTGATTAGTGCTCGAG 57.288 37.500 8.45 8.45 0.00 4.04
3500 3602 5.392767 TTTCTCTTGATTAGTGCTCGAGT 57.607 39.130 15.13 0.00 0.00 4.18
3580 3692 0.601046 CTGCTGCTGTTCGTTGGAGA 60.601 55.000 0.00 0.00 0.00 3.71
3606 3719 8.947055 ATATTTTTGTTGCCATATCCTTGAAC 57.053 30.769 0.00 0.00 0.00 3.18
3612 3725 6.222389 TGTTGCCATATCCTTGAACAAAAAG 58.778 36.000 0.00 0.00 0.00 2.27
3616 3729 7.322664 TGCCATATCCTTGAACAAAAAGATTC 58.677 34.615 0.00 0.00 0.00 2.52
3624 3737 6.346838 CCTTGAACAAAAAGATTCGCCAATTC 60.347 38.462 0.00 0.00 0.00 2.17
3696 3812 5.975693 TTTTTGCGAGGGTGAAATAGATT 57.024 34.783 0.00 0.00 0.00 2.40
3697 3813 5.975693 TTTTGCGAGGGTGAAATAGATTT 57.024 34.783 0.00 0.00 0.00 2.17
3698 3814 5.975693 TTTGCGAGGGTGAAATAGATTTT 57.024 34.783 0.00 0.00 0.00 1.82
3700 3816 7.639113 TTTGCGAGGGTGAAATAGATTTTAT 57.361 32.000 0.00 0.00 0.00 1.40
3701 3817 7.639113 TTGCGAGGGTGAAATAGATTTTATT 57.361 32.000 0.00 0.00 0.00 1.40
3702 3818 7.259290 TGCGAGGGTGAAATAGATTTTATTC 57.741 36.000 0.00 0.00 0.00 1.75
3706 3822 8.345565 CGAGGGTGAAATAGATTTTATTCCAAG 58.654 37.037 0.00 0.00 0.00 3.61
3708 3824 9.942526 AGGGTGAAATAGATTTTATTCCAAGAT 57.057 29.630 0.00 0.00 0.00 2.40
3715 3831 8.930846 ATAGATTTTATTCCAAGATCACAGGG 57.069 34.615 0.00 0.00 0.00 4.45
3716 3832 6.735556 AGATTTTATTCCAAGATCACAGGGT 58.264 36.000 0.00 0.00 0.00 4.34
3717 3833 7.184862 AGATTTTATTCCAAGATCACAGGGTT 58.815 34.615 0.00 0.00 0.00 4.11
3719 3835 7.696992 TTTTATTCCAAGATCACAGGGTTAC 57.303 36.000 0.00 0.00 0.00 2.50
3722 3838 4.927267 TCCAAGATCACAGGGTTACAAT 57.073 40.909 0.00 0.00 0.00 2.71
3723 3839 4.843728 TCCAAGATCACAGGGTTACAATC 58.156 43.478 0.00 0.00 0.00 2.67
3726 3842 5.124457 CCAAGATCACAGGGTTACAATCAAG 59.876 44.000 0.00 0.00 0.00 3.02
3727 3843 5.762179 AGATCACAGGGTTACAATCAAGA 57.238 39.130 0.00 0.00 0.00 3.02
3728 3844 5.738909 AGATCACAGGGTTACAATCAAGAG 58.261 41.667 0.00 0.00 0.00 2.85
3729 3845 4.286297 TCACAGGGTTACAATCAAGAGG 57.714 45.455 0.00 0.00 0.00 3.69
3730 3846 2.749621 CACAGGGTTACAATCAAGAGGC 59.250 50.000 0.00 0.00 0.00 4.70
3733 3849 3.826157 CAGGGTTACAATCAAGAGGCAAA 59.174 43.478 0.00 0.00 0.00 3.68
3734 3850 4.280677 CAGGGTTACAATCAAGAGGCAAAA 59.719 41.667 0.00 0.00 0.00 2.44
3735 3851 4.524328 AGGGTTACAATCAAGAGGCAAAAG 59.476 41.667 0.00 0.00 0.00 2.27
3737 3853 5.221441 GGGTTACAATCAAGAGGCAAAAGTT 60.221 40.000 0.00 0.00 0.00 2.66
3738 3854 5.920840 GGTTACAATCAAGAGGCAAAAGTTC 59.079 40.000 0.00 0.00 0.00 3.01
3746 3862 1.609072 GAGGCAAAAGTTCCTCCACAC 59.391 52.381 0.00 0.00 42.30 3.82
3748 3864 1.963515 GGCAAAAGTTCCTCCACACAT 59.036 47.619 0.00 0.00 0.00 3.21
3749 3865 2.288395 GGCAAAAGTTCCTCCACACATG 60.288 50.000 0.00 0.00 0.00 3.21
3752 3868 4.801891 CAAAAGTTCCTCCACACATGATG 58.198 43.478 0.00 0.00 0.00 3.07
3754 3870 1.988107 AGTTCCTCCACACATGATGGT 59.012 47.619 16.91 2.81 38.47 3.55
3755 3871 2.026822 AGTTCCTCCACACATGATGGTC 60.027 50.000 16.91 7.24 38.47 4.02
3756 3872 0.911769 TCCTCCACACATGATGGTCC 59.088 55.000 16.91 0.00 38.47 4.46
3758 3874 1.134280 CCTCCACACATGATGGTCCTC 60.134 57.143 16.91 0.00 38.47 3.71
3759 3875 1.836166 CTCCACACATGATGGTCCTCT 59.164 52.381 16.91 0.00 38.47 3.69
3761 3877 2.766263 TCCACACATGATGGTCCTCTAC 59.234 50.000 16.91 0.00 38.47 2.59
3774 3890 3.955551 GGTCCTCTACCTAGCCATATAGC 59.044 52.174 0.00 0.00 45.75 2.97
3775 3891 4.570079 GGTCCTCTACCTAGCCATATAGCA 60.570 50.000 0.00 0.00 45.75 3.49
3776 3892 4.642885 GTCCTCTACCTAGCCATATAGCAG 59.357 50.000 0.00 0.00 34.23 4.24
3778 3894 5.491439 TCCTCTACCTAGCCATATAGCAGTA 59.509 44.000 0.00 0.00 34.23 2.74
3779 3895 5.825679 CCTCTACCTAGCCATATAGCAGTAG 59.174 48.000 9.93 9.93 35.84 2.57
3780 3896 6.390048 TCTACCTAGCCATATAGCAGTAGT 57.610 41.667 13.52 2.37 35.91 2.73
3781 3897 7.365742 CCTCTACCTAGCCATATAGCAGTAGTA 60.366 44.444 13.52 3.17 35.91 1.82
3782 3898 7.337167 TCTACCTAGCCATATAGCAGTAGTAC 58.663 42.308 13.52 0.00 35.91 2.73
3784 3900 6.181908 ACCTAGCCATATAGCAGTAGTACTC 58.818 44.000 0.00 0.00 34.23 2.59
3785 3901 6.012333 ACCTAGCCATATAGCAGTAGTACTCT 60.012 42.308 0.00 3.94 34.23 3.24
3787 3903 6.134535 AGCCATATAGCAGTAGTACTCTCT 57.865 41.667 0.00 3.53 34.23 3.10
3788 3904 5.943416 AGCCATATAGCAGTAGTACTCTCTG 59.057 44.000 18.08 18.08 34.23 3.35
3789 3905 5.708230 GCCATATAGCAGTAGTACTCTCTGT 59.292 44.000 21.19 14.00 0.00 3.41
3790 3906 6.879993 GCCATATAGCAGTAGTACTCTCTGTA 59.120 42.308 21.19 15.11 0.00 2.74
3803 3919 7.092710 GTACTCTCTGTACGACTATACGAAG 57.907 44.000 0.00 0.00 41.58 3.79
3804 3920 5.049167 ACTCTCTGTACGACTATACGAAGG 58.951 45.833 0.00 0.00 37.03 3.46
3805 3921 3.806521 TCTCTGTACGACTATACGAAGGC 59.193 47.826 0.00 0.00 37.03 4.35
3806 3922 3.534554 TCTGTACGACTATACGAAGGCA 58.465 45.455 0.00 0.00 37.03 4.75
3807 3923 3.940852 TCTGTACGACTATACGAAGGCAA 59.059 43.478 0.00 0.00 37.03 4.52
3808 3924 4.577693 TCTGTACGACTATACGAAGGCAAT 59.422 41.667 0.00 0.00 37.03 3.56
3809 3925 4.852138 TGTACGACTATACGAAGGCAATC 58.148 43.478 0.00 0.00 37.03 2.67
3811 3927 2.615447 ACGACTATACGAAGGCAATCGA 59.385 45.455 17.72 0.00 45.48 3.59
3813 3929 3.846896 CGACTATACGAAGGCAATCGATC 59.153 47.826 17.72 7.35 45.48 3.69
3815 3931 4.799678 ACTATACGAAGGCAATCGATCTG 58.200 43.478 17.72 0.67 45.48 2.90
3816 3932 1.852942 TACGAAGGCAATCGATCTGC 58.147 50.000 17.72 18.43 45.48 4.26
3817 3933 0.176680 ACGAAGGCAATCGATCTGCT 59.823 50.000 22.80 11.11 45.48 4.24
3819 3935 1.789464 CGAAGGCAATCGATCTGCTAC 59.211 52.381 22.80 16.01 45.48 3.58
3820 3936 2.139118 GAAGGCAATCGATCTGCTACC 58.861 52.381 22.80 12.47 39.82 3.18
3821 3937 0.394565 AGGCAATCGATCTGCTACCC 59.605 55.000 22.80 12.23 39.82 3.69
3823 3939 1.618837 GGCAATCGATCTGCTACCCTA 59.381 52.381 22.80 0.00 39.82 3.53
3824 3940 2.234908 GGCAATCGATCTGCTACCCTAT 59.765 50.000 22.80 0.00 39.82 2.57
3825 3941 3.307059 GGCAATCGATCTGCTACCCTATT 60.307 47.826 22.80 0.00 39.82 1.73
3826 3942 4.319177 GCAATCGATCTGCTACCCTATTT 58.681 43.478 19.01 0.00 36.84 1.40
3828 3944 5.334414 GCAATCGATCTGCTACCCTATTTTG 60.334 44.000 19.01 3.44 36.84 2.44
3829 3945 3.728845 TCGATCTGCTACCCTATTTTGC 58.271 45.455 0.00 0.00 0.00 3.68
3830 3946 3.388024 TCGATCTGCTACCCTATTTTGCT 59.612 43.478 0.00 0.00 0.00 3.91
3831 3947 3.743396 CGATCTGCTACCCTATTTTGCTC 59.257 47.826 0.00 0.00 0.00 4.26
3832 3948 4.708177 GATCTGCTACCCTATTTTGCTCA 58.292 43.478 0.00 0.00 0.00 4.26
3834 3950 4.454678 TCTGCTACCCTATTTTGCTCATG 58.545 43.478 0.00 0.00 0.00 3.07
3835 3951 2.951642 TGCTACCCTATTTTGCTCATGC 59.048 45.455 0.00 0.00 40.20 4.06
3836 3952 3.217626 GCTACCCTATTTTGCTCATGCT 58.782 45.455 0.00 0.00 40.48 3.79
3838 3954 4.821805 GCTACCCTATTTTGCTCATGCTTA 59.178 41.667 0.00 0.00 40.48 3.09
3839 3955 5.299279 GCTACCCTATTTTGCTCATGCTTAA 59.701 40.000 0.00 0.00 40.48 1.85
3840 3956 6.015940 GCTACCCTATTTTGCTCATGCTTAAT 60.016 38.462 0.00 0.00 40.48 1.40
3841 3957 6.796785 ACCCTATTTTGCTCATGCTTAATT 57.203 33.333 0.00 0.00 40.48 1.40
3842 3958 7.186570 ACCCTATTTTGCTCATGCTTAATTT 57.813 32.000 0.00 0.00 40.48 1.82
3843 3959 7.623630 ACCCTATTTTGCTCATGCTTAATTTT 58.376 30.769 0.00 0.00 40.48 1.82
3844 3960 7.765819 ACCCTATTTTGCTCATGCTTAATTTTC 59.234 33.333 0.00 0.00 40.48 2.29
3845 3961 7.043192 CCCTATTTTGCTCATGCTTAATTTTCG 60.043 37.037 0.00 0.00 40.48 3.46
3848 3964 6.874297 TTTGCTCATGCTTAATTTTCGATG 57.126 33.333 0.00 0.00 40.48 3.84
3851 3967 5.588246 TGCTCATGCTTAATTTTCGATGGTA 59.412 36.000 0.00 0.00 40.48 3.25
3852 3968 6.262944 TGCTCATGCTTAATTTTCGATGGTAT 59.737 34.615 0.00 0.00 40.48 2.73
3853 3969 7.443879 TGCTCATGCTTAATTTTCGATGGTATA 59.556 33.333 0.00 0.00 40.48 1.47
3854 3970 8.289618 GCTCATGCTTAATTTTCGATGGTATAA 58.710 33.333 0.00 0.00 36.03 0.98
3856 3972 9.944663 TCATGCTTAATTTTCGATGGTATAAAC 57.055 29.630 0.00 0.00 0.00 2.01
3857 3973 9.950680 CATGCTTAATTTTCGATGGTATAAACT 57.049 29.630 0.00 0.00 0.00 2.66
3859 3975 9.391006 TGCTTAATTTTCGATGGTATAAACTCT 57.609 29.630 0.00 0.00 0.00 3.24
3860 3976 9.865484 GCTTAATTTTCGATGGTATAAACTCTC 57.135 33.333 0.00 0.00 0.00 3.20
3866 3982 8.922058 TTTCGATGGTATAAACTCTCTTACAC 57.078 34.615 0.00 0.00 0.00 2.90
3867 3983 7.035840 TCGATGGTATAAACTCTCTTACACC 57.964 40.000 0.00 0.00 30.31 4.16
3870 3986 7.471539 CGATGGTATAAACTCTCTTACACCCAT 60.472 40.741 0.00 0.00 28.76 4.00
3871 3987 8.792830 ATGGTATAAACTCTCTTACACCCATA 57.207 34.615 0.00 0.00 28.76 2.74
3872 3988 8.792830 TGGTATAAACTCTCTTACACCCATAT 57.207 34.615 0.00 0.00 28.76 1.78
3873 3989 8.647796 TGGTATAAACTCTCTTACACCCATATG 58.352 37.037 0.00 0.00 28.76 1.78
3874 3990 8.867097 GGTATAAACTCTCTTACACCCATATGA 58.133 37.037 3.65 0.00 0.00 2.15
3878 3994 4.904251 ACTCTCTTACACCCATATGATGCT 59.096 41.667 3.65 0.00 0.00 3.79
3881 3997 5.366477 TCTCTTACACCCATATGATGCTGAA 59.634 40.000 3.65 0.00 0.00 3.02
3882 3998 6.043590 TCTCTTACACCCATATGATGCTGAAT 59.956 38.462 3.65 0.00 0.00 2.57
3884 4000 4.719026 ACACCCATATGATGCTGAATCT 57.281 40.909 3.65 0.00 36.15 2.40
3885 4001 5.057843 ACACCCATATGATGCTGAATCTT 57.942 39.130 3.65 0.00 36.15 2.40
3886 4002 6.191657 ACACCCATATGATGCTGAATCTTA 57.808 37.500 3.65 0.00 36.15 2.10
3887 4003 6.236409 ACACCCATATGATGCTGAATCTTAG 58.764 40.000 3.65 0.00 36.15 2.18
3888 4004 5.123502 CACCCATATGATGCTGAATCTTAGC 59.876 44.000 3.65 0.00 41.49 3.09
3889 4005 4.639310 CCCATATGATGCTGAATCTTAGCC 59.361 45.833 3.65 0.00 40.42 3.93
3890 4006 5.250982 CCATATGATGCTGAATCTTAGCCA 58.749 41.667 3.65 0.00 40.42 4.75
3891 4007 5.123502 CCATATGATGCTGAATCTTAGCCAC 59.876 44.000 3.65 0.00 40.42 5.01
3893 4009 3.954200 TGATGCTGAATCTTAGCCACAA 58.046 40.909 0.00 0.00 40.42 3.33
3894 4010 4.334552 TGATGCTGAATCTTAGCCACAAA 58.665 39.130 0.00 0.00 40.42 2.83
3896 4012 4.707030 TGCTGAATCTTAGCCACAAATG 57.293 40.909 0.00 0.00 40.42 2.32
3898 4014 4.156556 TGCTGAATCTTAGCCACAAATGTC 59.843 41.667 0.00 0.00 40.42 3.06
3899 4015 4.439289 GCTGAATCTTAGCCACAAATGTCC 60.439 45.833 0.00 0.00 35.15 4.02
3900 4016 4.661222 TGAATCTTAGCCACAAATGTCCA 58.339 39.130 0.00 0.00 0.00 4.02
3901 4017 5.263599 TGAATCTTAGCCACAAATGTCCAT 58.736 37.500 0.00 0.00 0.00 3.41
3903 4019 6.889177 TGAATCTTAGCCACAAATGTCCATAA 59.111 34.615 0.00 0.00 0.00 1.90
3904 4020 6.949352 ATCTTAGCCACAAATGTCCATAAG 57.051 37.500 0.00 0.00 0.00 1.73
3906 4022 2.806434 AGCCACAAATGTCCATAAGCA 58.194 42.857 0.00 0.00 0.00 3.91
3907 4023 2.756760 AGCCACAAATGTCCATAAGCAG 59.243 45.455 0.00 0.00 0.00 4.24
3908 4024 2.754552 GCCACAAATGTCCATAAGCAGA 59.245 45.455 0.00 0.00 0.00 4.26
3910 4026 4.321899 GCCACAAATGTCCATAAGCAGAAA 60.322 41.667 0.00 0.00 0.00 2.52
3912 4028 5.634859 CCACAAATGTCCATAAGCAGAAAAC 59.365 40.000 0.00 0.00 0.00 2.43
3913 4029 5.634859 CACAAATGTCCATAAGCAGAAAACC 59.365 40.000 0.00 0.00 0.00 3.27
3914 4030 5.304101 ACAAATGTCCATAAGCAGAAAACCA 59.696 36.000 0.00 0.00 0.00 3.67
3915 4031 6.183360 ACAAATGTCCATAAGCAGAAAACCAA 60.183 34.615 0.00 0.00 0.00 3.67
3916 4032 6.418057 AATGTCCATAAGCAGAAAACCAAA 57.582 33.333 0.00 0.00 0.00 3.28
3917 4033 5.452078 TGTCCATAAGCAGAAAACCAAAG 57.548 39.130 0.00 0.00 0.00 2.77
3918 4034 5.136828 TGTCCATAAGCAGAAAACCAAAGA 58.863 37.500 0.00 0.00 0.00 2.52
3919 4035 5.009610 TGTCCATAAGCAGAAAACCAAAGAC 59.990 40.000 0.00 0.00 0.00 3.01
3920 4036 5.241728 GTCCATAAGCAGAAAACCAAAGACT 59.758 40.000 0.00 0.00 0.00 3.24
3921 4037 5.241506 TCCATAAGCAGAAAACCAAAGACTG 59.758 40.000 0.00 0.00 0.00 3.51
3923 4039 4.639135 AAGCAGAAAACCAAAGACTGTC 57.361 40.909 0.00 0.00 0.00 3.51
3924 4040 2.952310 AGCAGAAAACCAAAGACTGTCC 59.048 45.455 3.76 0.00 0.00 4.02
3925 4041 2.034685 GCAGAAAACCAAAGACTGTCCC 59.965 50.000 3.76 0.00 0.00 4.46
3926 4042 2.623416 CAGAAAACCAAAGACTGTCCCC 59.377 50.000 3.76 0.00 0.00 4.81
3927 4043 1.961394 GAAAACCAAAGACTGTCCCCC 59.039 52.381 3.76 0.00 0.00 5.40
3929 4045 1.231963 AACCAAAGACTGTCCCCCTT 58.768 50.000 3.76 0.00 0.00 3.95
3930 4046 0.771755 ACCAAAGACTGTCCCCCTTC 59.228 55.000 3.76 0.00 0.00 3.46
3931 4047 0.771127 CCAAAGACTGTCCCCCTTCA 59.229 55.000 3.76 0.00 0.00 3.02
3932 4048 1.355720 CCAAAGACTGTCCCCCTTCAT 59.644 52.381 3.76 0.00 0.00 2.57
3933 4049 2.225117 CCAAAGACTGTCCCCCTTCATT 60.225 50.000 3.76 0.00 0.00 2.57
3934 4050 2.821969 CAAAGACTGTCCCCCTTCATTG 59.178 50.000 3.76 0.00 0.00 2.82
3936 4052 1.630878 AGACTGTCCCCCTTCATTGAC 59.369 52.381 3.76 0.00 0.00 3.18
3937 4053 1.351017 GACTGTCCCCCTTCATTGACA 59.649 52.381 0.00 0.00 36.40 3.58
3938 4054 1.780309 ACTGTCCCCCTTCATTGACAA 59.220 47.619 0.00 0.00 37.29 3.18
3939 4055 2.162681 CTGTCCCCCTTCATTGACAAC 58.837 52.381 0.00 0.00 37.29 3.32
3940 4056 1.496857 TGTCCCCCTTCATTGACAACA 59.503 47.619 0.00 0.00 34.98 3.33
3942 4058 3.165071 GTCCCCCTTCATTGACAACATT 58.835 45.455 0.00 0.00 0.00 2.71
3943 4059 3.056607 GTCCCCCTTCATTGACAACATTG 60.057 47.826 0.00 0.00 0.00 2.82
3944 4060 2.354003 CCCCCTTCATTGACAACATTGC 60.354 50.000 0.00 0.00 0.00 3.56
3945 4061 2.564062 CCCCTTCATTGACAACATTGCT 59.436 45.455 0.00 0.00 0.00 3.91
3947 4063 4.240096 CCCTTCATTGACAACATTGCTTC 58.760 43.478 0.00 0.00 0.00 3.86
3948 4064 4.240096 CCTTCATTGACAACATTGCTTCC 58.760 43.478 0.00 0.00 0.00 3.46
3949 4065 3.557577 TCATTGACAACATTGCTTCCG 57.442 42.857 0.00 0.00 0.00 4.30
3950 4066 3.145286 TCATTGACAACATTGCTTCCGA 58.855 40.909 0.00 0.00 0.00 4.55
3952 4068 3.557577 TTGACAACATTGCTTCCGATG 57.442 42.857 0.00 0.00 38.57 3.84
3953 4069 2.777094 TGACAACATTGCTTCCGATGA 58.223 42.857 0.00 0.00 36.51 2.92
3970 4086 3.431912 CGATGAGTCGGTTTGAACAATGA 59.568 43.478 0.00 0.00 44.00 2.57
3972 4088 5.290885 CGATGAGTCGGTTTGAACAATGATA 59.709 40.000 0.00 0.00 44.00 2.15
3976 4092 4.935808 AGTCGGTTTGAACAATGATAGACC 59.064 41.667 0.00 0.00 0.00 3.85
3977 4093 4.094442 GTCGGTTTGAACAATGATAGACCC 59.906 45.833 0.00 0.00 0.00 4.46
3978 4094 3.377172 CGGTTTGAACAATGATAGACCCC 59.623 47.826 0.00 0.00 0.00 4.95
3979 4095 4.600062 GGTTTGAACAATGATAGACCCCT 58.400 43.478 0.00 0.00 0.00 4.79
3980 4096 4.640647 GGTTTGAACAATGATAGACCCCTC 59.359 45.833 0.00 0.00 0.00 4.30
3981 4097 5.253330 GTTTGAACAATGATAGACCCCTCA 58.747 41.667 0.00 0.00 0.00 3.86
3983 4099 4.104086 TGAACAATGATAGACCCCTCACT 58.896 43.478 0.00 0.00 0.00 3.41
3985 4101 5.905331 TGAACAATGATAGACCCCTCACTAT 59.095 40.000 0.00 0.00 32.87 2.12
3986 4102 5.815233 ACAATGATAGACCCCTCACTATG 57.185 43.478 0.00 0.00 30.74 2.23
3987 4103 4.040952 ACAATGATAGACCCCTCACTATGC 59.959 45.833 0.00 0.00 30.74 3.14
3989 4105 3.234353 TGATAGACCCCTCACTATGCTG 58.766 50.000 0.00 0.00 30.74 4.41
3991 4107 2.254152 AGACCCCTCACTATGCTGAA 57.746 50.000 0.00 0.00 0.00 3.02
3992 4108 2.769209 AGACCCCTCACTATGCTGAAT 58.231 47.619 0.00 0.00 0.00 2.57
3993 4109 3.928754 AGACCCCTCACTATGCTGAATA 58.071 45.455 0.00 0.00 0.00 1.75
4007 4123 1.959282 CTGAATAGCAAGGGCCATTCC 59.041 52.381 6.18 0.00 44.37 3.01
4008 4124 1.570501 TGAATAGCAAGGGCCATTCCT 59.429 47.619 6.18 0.28 44.37 3.36
4009 4125 2.024080 TGAATAGCAAGGGCCATTCCTT 60.024 45.455 6.18 0.00 44.37 3.36
4014 4130 3.404636 AAGGGCCATTCCTTGCATT 57.595 47.368 6.18 0.00 44.78 3.56
4015 4131 2.548464 AAGGGCCATTCCTTGCATTA 57.452 45.000 6.18 0.00 44.78 1.90
4019 4135 1.339291 GGCCATTCCTTGCATTAGAGC 59.661 52.381 0.00 0.00 0.00 4.09
4021 4137 2.626743 GCCATTCCTTGCATTAGAGCAT 59.373 45.455 0.00 0.00 45.19 3.79
4022 4138 3.552273 GCCATTCCTTGCATTAGAGCATG 60.552 47.826 0.00 0.00 45.19 4.06
4023 4139 3.635373 CCATTCCTTGCATTAGAGCATGT 59.365 43.478 0.00 0.00 45.19 3.21
4024 4140 4.823442 CCATTCCTTGCATTAGAGCATGTA 59.177 41.667 0.00 0.00 45.19 2.29
4025 4141 5.048921 CCATTCCTTGCATTAGAGCATGTAG 60.049 44.000 0.00 0.00 45.19 2.74
4026 4142 4.760530 TCCTTGCATTAGAGCATGTAGT 57.239 40.909 0.00 0.00 45.19 2.73
4028 4144 5.118990 TCCTTGCATTAGAGCATGTAGTTC 58.881 41.667 0.00 0.00 45.19 3.01
4029 4145 4.025396 CCTTGCATTAGAGCATGTAGTTCG 60.025 45.833 0.00 0.00 45.19 3.95
4030 4146 3.457234 TGCATTAGAGCATGTAGTTCGG 58.543 45.455 0.00 0.00 40.11 4.30
4031 4147 2.221981 GCATTAGAGCATGTAGTTCGGC 59.778 50.000 0.00 0.00 31.99 5.54
4032 4148 3.722147 CATTAGAGCATGTAGTTCGGCT 58.278 45.455 0.00 0.00 39.75 5.52
4033 4149 3.887621 TTAGAGCATGTAGTTCGGCTT 57.112 42.857 0.00 0.00 36.59 4.35
4034 4150 2.301577 AGAGCATGTAGTTCGGCTTC 57.698 50.000 0.00 0.00 36.59 3.86
4036 4152 3.024547 AGAGCATGTAGTTCGGCTTCTA 58.975 45.455 0.00 0.00 36.59 2.10
4037 4153 3.067461 AGAGCATGTAGTTCGGCTTCTAG 59.933 47.826 0.00 0.00 36.59 2.43
4038 4154 2.101582 AGCATGTAGTTCGGCTTCTAGG 59.898 50.000 0.00 0.00 31.34 3.02
4039 4155 2.803492 GCATGTAGTTCGGCTTCTAGGG 60.803 54.545 0.00 0.00 0.00 3.53
4040 4156 0.822164 TGTAGTTCGGCTTCTAGGGC 59.178 55.000 0.00 0.00 0.00 5.19
4049 4165 0.744414 GCTTCTAGGGCGTCATTGCA 60.744 55.000 0.00 0.00 36.28 4.08
4050 4166 1.293924 CTTCTAGGGCGTCATTGCAG 58.706 55.000 0.00 0.00 36.28 4.41
4051 4167 0.613260 TTCTAGGGCGTCATTGCAGT 59.387 50.000 0.00 0.00 36.28 4.40
4068 4208 9.806203 TCATTGCAGTTAAATATCTTGAATTGG 57.194 29.630 0.00 0.00 0.00 3.16
4232 4662 4.082081 CCATCCATGTTTATGCAGTTGTGT 60.082 41.667 0.00 0.00 32.79 3.72
4257 4689 0.242017 AGCCGACATTTGAGCTTTGC 59.758 50.000 0.00 0.00 29.27 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.459232 TCTGCAAAGACCGGATCATAG 57.541 47.619 9.46 0.00 0.00 2.23
1 2 3.531538 GTTCTGCAAAGACCGGATCATA 58.468 45.455 9.46 0.00 0.00 2.15
4 5 1.087501 GGTTCTGCAAAGACCGGATC 58.912 55.000 9.46 1.42 0.00 3.36
5 6 0.693049 AGGTTCTGCAAAGACCGGAT 59.307 50.000 9.46 0.00 0.00 4.18
6 7 0.034896 GAGGTTCTGCAAAGACCGGA 59.965 55.000 9.46 0.00 0.00 5.14
7 8 0.955919 GGAGGTTCTGCAAAGACCGG 60.956 60.000 0.00 0.00 0.00 5.28
8 9 0.955919 GGGAGGTTCTGCAAAGACCG 60.956 60.000 7.04 0.00 0.00 4.79
9 10 0.402121 AGGGAGGTTCTGCAAAGACC 59.598 55.000 4.98 4.98 0.00 3.85
10 11 1.611936 GGAGGGAGGTTCTGCAAAGAC 60.612 57.143 0.00 0.00 0.00 3.01
11 12 0.693049 GGAGGGAGGTTCTGCAAAGA 59.307 55.000 0.00 0.00 0.00 2.52
12 13 0.322906 GGGAGGGAGGTTCTGCAAAG 60.323 60.000 0.00 0.00 0.00 2.77
13 14 1.065410 TGGGAGGGAGGTTCTGCAAA 61.065 55.000 0.00 0.00 0.00 3.68
14 15 1.065410 TTGGGAGGGAGGTTCTGCAA 61.065 55.000 0.00 0.00 0.00 4.08
15 16 1.463214 TTGGGAGGGAGGTTCTGCA 60.463 57.895 0.00 0.00 0.00 4.41
16 17 1.301293 CTTGGGAGGGAGGTTCTGC 59.699 63.158 0.00 0.00 0.00 4.26
17 18 1.994463 CCTTGGGAGGGAGGTTCTG 59.006 63.158 0.00 0.00 39.55 3.02
18 19 4.589569 CCTTGGGAGGGAGGTTCT 57.410 61.111 0.00 0.00 39.55 3.01
47 48 6.474364 CGAGGTCCAAAATTGTTTTGTTTTC 58.526 36.000 12.53 5.71 46.53 2.29
48 49 5.163804 GCGAGGTCCAAAATTGTTTTGTTTT 60.164 36.000 12.53 0.00 46.53 2.43
63 64 1.388547 GCATATTTTGGCGAGGTCCA 58.611 50.000 0.00 0.00 0.00 4.02
167 169 7.049754 AGCCAGATTCAAACAAACTTCAAAAT 58.950 30.769 0.00 0.00 0.00 1.82
175 177 2.552315 TCCGAGCCAGATTCAAACAAAC 59.448 45.455 0.00 0.00 0.00 2.93
178 180 2.559698 TTCCGAGCCAGATTCAAACA 57.440 45.000 0.00 0.00 0.00 2.83
179 181 4.082787 TGAAATTCCGAGCCAGATTCAAAC 60.083 41.667 0.00 0.00 0.00 2.93
180 182 4.078537 TGAAATTCCGAGCCAGATTCAAA 58.921 39.130 0.00 0.00 0.00 2.69
202 204 4.529897 GGGGTCGAAATATTTGTAACCCT 58.470 43.478 26.34 0.00 43.59 4.34
220 222 1.153046 CGCATATTTCGGTGGGGGT 60.153 57.895 0.00 0.00 0.00 4.95
221 223 0.464735 TTCGCATATTTCGGTGGGGG 60.465 55.000 0.00 0.00 0.00 5.40
231 233 8.421002 AGCAGGGTTAATTAAATTTCGCATATT 58.579 29.630 0.00 0.00 0.00 1.28
232 234 7.951591 AGCAGGGTTAATTAAATTTCGCATAT 58.048 30.769 0.00 0.00 0.00 1.78
235 237 5.393678 GGAGCAGGGTTAATTAAATTTCGCA 60.394 40.000 0.00 0.00 0.00 5.10
292 303 3.054139 ACTCCTGAGCAATGAAATAGCCA 60.054 43.478 0.00 0.00 0.00 4.75
308 319 8.515414 CCTTTTTATTTCTGGTCTTAACTCCTG 58.485 37.037 0.00 0.00 0.00 3.86
398 409 4.120331 GCCGGTGCACTGCCATTC 62.120 66.667 20.76 0.00 37.47 2.67
431 442 3.784683 GCGACCACGACTCCATGAGAG 62.785 61.905 9.01 9.01 43.25 3.20
432 443 1.934220 GCGACCACGACTCCATGAGA 61.934 60.000 0.00 0.00 42.66 3.27
433 444 1.517257 GCGACCACGACTCCATGAG 60.517 63.158 0.00 0.00 42.66 2.90
434 445 2.212900 CTGCGACCACGACTCCATGA 62.213 60.000 0.00 0.00 42.66 3.07
435 446 1.807165 CTGCGACCACGACTCCATG 60.807 63.158 0.00 0.00 42.66 3.66
533 544 2.352001 GCATTGCTGCGCTCATCG 60.352 61.111 9.73 2.31 38.92 3.84
554 565 1.301009 GGAATCTAGAAGCGGCCGG 60.301 63.158 29.38 9.14 0.00 6.13
555 566 1.301009 GGGAATCTAGAAGCGGCCG 60.301 63.158 24.05 24.05 0.00 6.13
556 567 0.250081 CTGGGAATCTAGAAGCGGCC 60.250 60.000 0.00 0.00 0.00 6.13
557 568 0.753262 TCTGGGAATCTAGAAGCGGC 59.247 55.000 0.00 0.00 0.00 6.53
585 596 4.143333 CAGCAAGCTGGCCATGGC 62.143 66.667 29.47 29.47 40.17 4.40
632 671 1.946081 GCTGTAGGAGTAGGACGGTAC 59.054 57.143 0.00 0.00 0.00 3.34
633 672 1.842562 AGCTGTAGGAGTAGGACGGTA 59.157 52.381 0.00 0.00 0.00 4.02
634 673 0.624785 AGCTGTAGGAGTAGGACGGT 59.375 55.000 0.00 0.00 0.00 4.83
635 674 1.310904 GAGCTGTAGGAGTAGGACGG 58.689 60.000 0.00 0.00 0.00 4.79
639 678 0.948678 GAGCGAGCTGTAGGAGTAGG 59.051 60.000 0.84 0.00 0.00 3.18
715 754 4.321601 CGAGCTATCTACCATCTGAAAGGG 60.322 50.000 0.00 0.00 0.00 3.95
733 772 2.890474 CGGGCGTAAATGCGAGCT 60.890 61.111 0.00 0.00 35.06 4.09
840 880 3.342719 CTCGATGGATGAGCTAGCTAGA 58.657 50.000 25.15 7.90 0.00 2.43
882 922 1.070821 CATGCAGTGAGTGTGTACCG 58.929 55.000 0.00 0.00 0.00 4.02
954 1008 0.665835 GACCAGCTCACGATCTCGAT 59.334 55.000 6.60 0.00 43.02 3.59
990 1044 1.883084 GACGTCCATGGCGCCTTAG 60.883 63.158 29.70 15.25 0.00 2.18
991 1045 2.173758 TTGACGTCCATGGCGCCTTA 62.174 55.000 29.70 8.87 0.00 2.69
995 1052 4.147322 CGTTGACGTCCATGGCGC 62.147 66.667 22.90 17.13 34.11 6.53
996 1053 2.431771 TCGTTGACGTCCATGGCG 60.432 61.111 21.83 21.83 40.80 5.69
997 1054 3.165498 GTCGTTGACGTCCATGGC 58.835 61.111 14.12 5.25 40.80 4.40
1629 1686 1.539712 GGCAGCGAGATCATCATCACA 60.540 52.381 0.00 0.00 0.00 3.58
2106 2163 5.827797 GGATGGATTAATCACCTGCAAGTAA 59.172 40.000 17.07 0.00 0.00 2.24
2218 2276 6.484818 AGAATTGATTTTGCCCAAATTTCG 57.515 33.333 0.00 0.00 35.02 3.46
2219 2277 7.330700 TCGTAGAATTGATTTTGCCCAAATTTC 59.669 33.333 0.00 0.00 35.02 2.17
2221 2279 6.696411 TCGTAGAATTGATTTTGCCCAAATT 58.304 32.000 0.00 0.00 35.02 1.82
2222 2280 6.279513 TCGTAGAATTGATTTTGCCCAAAT 57.720 33.333 0.00 0.00 37.84 2.32
2223 2281 5.713792 TCGTAGAATTGATTTTGCCCAAA 57.286 34.783 0.00 0.00 0.00 3.28
2227 2285 7.581011 ACAATTTCGTAGAATTGATTTTGCC 57.419 32.000 20.22 0.00 45.90 4.52
2290 2369 5.555966 TGTGTCATAATGCTAAAGTGGACA 58.444 37.500 0.00 0.00 0.00 4.02
2304 2383 8.257306 TCAGTTCATGTAGCTAATGTGTCATAA 58.743 33.333 0.00 0.00 0.00 1.90
2420 2499 0.459585 AAACATGGGACCGATCGACG 60.460 55.000 18.66 2.80 42.18 5.12
2475 2554 0.179189 CGAAATCTTGGTTCGCAGGC 60.179 55.000 0.00 0.00 41.13 4.85
2492 2571 7.521099 CGTCAACTATCCTTAATTAGTAGCCGA 60.521 40.741 0.00 0.00 0.00 5.54
2591 2670 6.324042 TGTTTTCATGTCCAAATCATCGATG 58.676 36.000 19.61 19.61 0.00 3.84
2593 2672 5.704978 TCTGTTTTCATGTCCAAATCATCGA 59.295 36.000 0.00 0.00 0.00 3.59
2608 2687 9.179552 CAAACGTCATTTTCATATCTGTTTTCA 57.820 29.630 0.00 0.00 0.00 2.69
2740 2820 5.163754 GCAGAAAACTGTCGCCATAATTAGT 60.164 40.000 0.00 0.00 0.00 2.24
3173 3253 1.609794 GAAGGTCTCGGTGGGGTCT 60.610 63.158 0.00 0.00 0.00 3.85
3325 3416 1.632920 TGACACCCTGCCATAATCACA 59.367 47.619 0.00 0.00 0.00 3.58
3333 3424 1.418097 ATGACACTGACACCCTGCCA 61.418 55.000 0.00 0.00 0.00 4.92
3334 3425 0.957395 CATGACACTGACACCCTGCC 60.957 60.000 0.00 0.00 0.00 4.85
3336 3427 0.957395 GGCATGACACTGACACCCTG 60.957 60.000 0.00 0.00 0.00 4.45
3337 3428 1.130054 AGGCATGACACTGACACCCT 61.130 55.000 0.00 0.00 0.00 4.34
3341 3432 1.624813 TGATGAGGCATGACACTGACA 59.375 47.619 0.00 0.00 0.00 3.58
3342 3433 2.391616 TGATGAGGCATGACACTGAC 57.608 50.000 0.00 0.00 0.00 3.51
3343 3434 2.568509 TCTTGATGAGGCATGACACTGA 59.431 45.455 0.00 0.00 0.00 3.41
3344 3435 2.981898 TCTTGATGAGGCATGACACTG 58.018 47.619 0.00 0.00 0.00 3.66
3345 3436 3.262660 TCTTCTTGATGAGGCATGACACT 59.737 43.478 0.00 0.00 0.00 3.55
3440 3532 5.106555 ACATGACGCTAAAATTGAAGAGGTG 60.107 40.000 0.00 0.00 0.00 4.00
3476 3570 6.223852 ACTCGAGCACTAATCAAGAGAAAAA 58.776 36.000 13.61 0.00 0.00 1.94
3499 3601 6.014584 AGAGAAGAAGAAAGAAGAGAAGGGAC 60.015 42.308 0.00 0.00 0.00 4.46
3500 3602 6.081356 AGAGAAGAAGAAAGAAGAGAAGGGA 58.919 40.000 0.00 0.00 0.00 4.20
3606 3719 6.620678 TCCTTAGAATTGGCGAATCTTTTTG 58.379 36.000 0.00 0.00 0.00 2.44
3612 3725 4.991687 CCTACTCCTTAGAATTGGCGAATC 59.008 45.833 0.00 0.00 0.00 2.52
3616 3729 2.484889 GCCTACTCCTTAGAATTGGCG 58.515 52.381 0.00 0.00 0.00 5.69
3624 3737 3.522553 CTCCAAAACGCCTACTCCTTAG 58.477 50.000 0.00 0.00 0.00 2.18
3674 3790 5.975693 AATCTATTTCACCCTCGCAAAAA 57.024 34.783 0.00 0.00 0.00 1.94
3675 3791 5.975693 AAATCTATTTCACCCTCGCAAAA 57.024 34.783 0.00 0.00 0.00 2.44
3676 3792 5.975693 AAAATCTATTTCACCCTCGCAAA 57.024 34.783 0.00 0.00 0.00 3.68
3677 3793 7.201785 GGAATAAAATCTATTTCACCCTCGCAA 60.202 37.037 0.00 0.00 0.00 4.85
3678 3794 6.262273 GGAATAAAATCTATTTCACCCTCGCA 59.738 38.462 0.00 0.00 0.00 5.10
3679 3795 6.262273 TGGAATAAAATCTATTTCACCCTCGC 59.738 38.462 0.00 0.00 0.00 5.03
3680 3796 7.801716 TGGAATAAAATCTATTTCACCCTCG 57.198 36.000 0.00 0.00 0.00 4.63
3681 3797 9.408648 TCTTGGAATAAAATCTATTTCACCCTC 57.591 33.333 0.00 0.00 0.00 4.30
3682 3798 9.942526 ATCTTGGAATAAAATCTATTTCACCCT 57.057 29.630 0.00 0.00 0.00 4.34
3691 3807 7.872138 ACCCTGTGATCTTGGAATAAAATCTA 58.128 34.615 0.00 0.00 0.00 1.98
3693 3809 7.410120 AACCCTGTGATCTTGGAATAAAATC 57.590 36.000 0.00 0.00 0.00 2.17
3694 3810 7.893302 TGTAACCCTGTGATCTTGGAATAAAAT 59.107 33.333 0.00 0.00 0.00 1.82
3695 3811 7.235079 TGTAACCCTGTGATCTTGGAATAAAA 58.765 34.615 0.00 0.00 0.00 1.52
3696 3812 6.785076 TGTAACCCTGTGATCTTGGAATAAA 58.215 36.000 0.00 0.00 0.00 1.40
3697 3813 6.381498 TGTAACCCTGTGATCTTGGAATAA 57.619 37.500 0.00 0.00 0.00 1.40
3698 3814 6.381498 TTGTAACCCTGTGATCTTGGAATA 57.619 37.500 0.00 0.00 0.00 1.75
3700 3816 4.715534 TTGTAACCCTGTGATCTTGGAA 57.284 40.909 0.00 0.00 0.00 3.53
3701 3817 4.288366 TGATTGTAACCCTGTGATCTTGGA 59.712 41.667 0.00 0.00 0.00 3.53
3702 3818 4.588899 TGATTGTAACCCTGTGATCTTGG 58.411 43.478 0.00 0.00 0.00 3.61
3706 3822 4.878397 CCTCTTGATTGTAACCCTGTGATC 59.122 45.833 0.00 0.00 0.00 2.92
3708 3824 3.559171 GCCTCTTGATTGTAACCCTGTGA 60.559 47.826 0.00 0.00 0.00 3.58
3709 3825 2.749621 GCCTCTTGATTGTAACCCTGTG 59.250 50.000 0.00 0.00 0.00 3.66
3711 3827 3.071874 TGCCTCTTGATTGTAACCCTG 57.928 47.619 0.00 0.00 0.00 4.45
3713 3829 4.280929 ACTTTTGCCTCTTGATTGTAACCC 59.719 41.667 0.00 0.00 0.00 4.11
3714 3830 5.453567 ACTTTTGCCTCTTGATTGTAACC 57.546 39.130 0.00 0.00 0.00 2.85
3715 3831 5.920840 GGAACTTTTGCCTCTTGATTGTAAC 59.079 40.000 0.00 0.00 0.00 2.50
3716 3832 5.833131 AGGAACTTTTGCCTCTTGATTGTAA 59.167 36.000 0.00 0.00 27.25 2.41
3717 3833 5.385198 AGGAACTTTTGCCTCTTGATTGTA 58.615 37.500 0.00 0.00 27.25 2.41
3719 3835 4.802999 GAGGAACTTTTGCCTCTTGATTG 58.197 43.478 0.00 0.00 45.72 2.67
3727 3843 1.064017 TGTGTGGAGGAACTTTTGCCT 60.064 47.619 0.00 0.00 41.55 4.75
3728 3844 1.398692 TGTGTGGAGGAACTTTTGCC 58.601 50.000 0.00 0.00 41.55 4.52
3729 3845 2.622942 TCATGTGTGGAGGAACTTTTGC 59.377 45.455 0.00 0.00 41.55 3.68
3730 3846 4.321452 CCATCATGTGTGGAGGAACTTTTG 60.321 45.833 12.66 0.00 41.55 2.44
3733 3849 2.376518 ACCATCATGTGTGGAGGAACTT 59.623 45.455 21.36 0.67 41.55 2.66
3735 3851 2.359900 GACCATCATGTGTGGAGGAAC 58.640 52.381 21.36 7.80 39.12 3.62
3737 3853 0.911769 GGACCATCATGTGTGGAGGA 59.088 55.000 21.36 0.00 39.12 3.71
3738 3854 0.914644 AGGACCATCATGTGTGGAGG 59.085 55.000 21.36 6.60 39.12 4.30
3741 3857 3.185246 GTAGAGGACCATCATGTGTGG 57.815 52.381 15.35 15.35 42.55 4.17
3754 3870 4.292571 ACTGCTATATGGCTAGGTAGAGGA 59.707 45.833 12.66 0.00 0.00 3.71
3755 3871 4.605183 ACTGCTATATGGCTAGGTAGAGG 58.395 47.826 12.66 0.00 0.00 3.69
3756 3872 6.419791 ACTACTGCTATATGGCTAGGTAGAG 58.580 44.000 27.41 14.50 36.07 2.43
3758 3874 7.340256 AGTACTACTGCTATATGGCTAGGTAG 58.660 42.308 23.24 23.24 37.00 3.18
3759 3875 7.182387 AGAGTACTACTGCTATATGGCTAGGTA 59.818 40.741 12.66 10.98 0.00 3.08
3761 3877 6.419791 AGAGTACTACTGCTATATGGCTAGG 58.580 44.000 12.66 5.36 0.00 3.02
3762 3878 7.279981 CAGAGAGTACTACTGCTATATGGCTAG 59.720 44.444 12.66 8.89 0.00 3.42
3763 3879 7.106890 CAGAGAGTACTACTGCTATATGGCTA 58.893 42.308 12.66 0.00 0.00 3.93
3764 3880 5.943416 CAGAGAGTACTACTGCTATATGGCT 59.057 44.000 12.66 0.00 0.00 4.75
3765 3881 5.708230 ACAGAGAGTACTACTGCTATATGGC 59.292 44.000 21.76 3.73 35.38 4.40
3780 3896 6.212235 CCTTCGTATAGTCGTACAGAGAGTA 58.788 44.000 0.00 0.00 0.00 2.59
3781 3897 5.049167 CCTTCGTATAGTCGTACAGAGAGT 58.951 45.833 0.00 0.00 0.00 3.24
3782 3898 4.084433 GCCTTCGTATAGTCGTACAGAGAG 60.084 50.000 0.00 0.00 0.00 3.20
3784 3900 3.558829 TGCCTTCGTATAGTCGTACAGAG 59.441 47.826 0.00 0.00 0.00 3.35
3785 3901 3.534554 TGCCTTCGTATAGTCGTACAGA 58.465 45.455 0.00 0.00 0.00 3.41
3787 3903 4.553351 CGATTGCCTTCGTATAGTCGTACA 60.553 45.833 0.00 0.00 34.46 2.90
3788 3904 3.904824 CGATTGCCTTCGTATAGTCGTAC 59.095 47.826 0.00 0.00 34.46 3.67
3789 3905 3.809279 TCGATTGCCTTCGTATAGTCGTA 59.191 43.478 5.45 0.00 40.03 3.43
3790 3906 2.615447 TCGATTGCCTTCGTATAGTCGT 59.385 45.455 5.45 0.00 40.03 4.34
3791 3907 3.263602 TCGATTGCCTTCGTATAGTCG 57.736 47.619 5.45 0.00 40.03 4.18
3792 3908 4.854291 CAGATCGATTGCCTTCGTATAGTC 59.146 45.833 0.00 0.00 40.03 2.59
3793 3909 4.799678 CAGATCGATTGCCTTCGTATAGT 58.200 43.478 0.00 0.00 40.03 2.12
3796 3912 2.036475 AGCAGATCGATTGCCTTCGTAT 59.964 45.455 21.22 5.97 42.48 3.06
3798 3914 0.176680 AGCAGATCGATTGCCTTCGT 59.823 50.000 21.22 7.02 42.48 3.85
3799 3915 1.789464 GTAGCAGATCGATTGCCTTCG 59.211 52.381 21.22 0.00 42.48 3.79
3800 3916 2.139118 GGTAGCAGATCGATTGCCTTC 58.861 52.381 21.22 14.49 42.48 3.46
3801 3917 1.202698 GGGTAGCAGATCGATTGCCTT 60.203 52.381 21.22 11.63 42.48 4.35
3803 3919 0.394565 AGGGTAGCAGATCGATTGCC 59.605 55.000 21.22 10.17 42.48 4.52
3804 3920 3.601443 ATAGGGTAGCAGATCGATTGC 57.399 47.619 18.79 18.79 41.83 3.56
3805 3921 5.334414 GCAAAATAGGGTAGCAGATCGATTG 60.334 44.000 0.00 1.24 0.00 2.67
3806 3922 4.757149 GCAAAATAGGGTAGCAGATCGATT 59.243 41.667 0.00 0.00 0.00 3.34
3807 3923 4.040952 AGCAAAATAGGGTAGCAGATCGAT 59.959 41.667 0.00 0.00 0.00 3.59
3808 3924 3.388024 AGCAAAATAGGGTAGCAGATCGA 59.612 43.478 0.00 0.00 0.00 3.59
3809 3925 3.733337 AGCAAAATAGGGTAGCAGATCG 58.267 45.455 0.00 0.00 0.00 3.69
3811 3927 4.778213 TGAGCAAAATAGGGTAGCAGAT 57.222 40.909 0.00 0.00 0.00 2.90
3813 3929 3.004106 GCATGAGCAAAATAGGGTAGCAG 59.996 47.826 0.00 0.00 41.58 4.24
3815 3931 3.217626 AGCATGAGCAAAATAGGGTAGC 58.782 45.455 0.00 0.00 45.49 3.58
3816 3932 6.942532 TTAAGCATGAGCAAAATAGGGTAG 57.057 37.500 0.00 0.00 45.49 3.18
3817 3933 7.896383 AATTAAGCATGAGCAAAATAGGGTA 57.104 32.000 0.00 0.00 45.49 3.69
3819 3935 7.043192 CGAAAATTAAGCATGAGCAAAATAGGG 60.043 37.037 0.00 0.00 45.49 3.53
3820 3936 7.701924 TCGAAAATTAAGCATGAGCAAAATAGG 59.298 33.333 0.00 0.00 45.49 2.57
3821 3937 8.619146 TCGAAAATTAAGCATGAGCAAAATAG 57.381 30.769 0.00 0.00 45.49 1.73
3823 3939 7.010738 CCATCGAAAATTAAGCATGAGCAAAAT 59.989 33.333 0.00 0.00 45.49 1.82
3824 3940 6.310956 CCATCGAAAATTAAGCATGAGCAAAA 59.689 34.615 0.00 0.00 45.49 2.44
3825 3941 5.806502 CCATCGAAAATTAAGCATGAGCAAA 59.193 36.000 0.00 0.00 45.49 3.68
3826 3942 5.105797 ACCATCGAAAATTAAGCATGAGCAA 60.106 36.000 0.00 0.00 45.49 3.91
3828 3944 4.925068 ACCATCGAAAATTAAGCATGAGC 58.075 39.130 0.00 0.00 42.56 4.26
3830 3946 9.944663 GTTTATACCATCGAAAATTAAGCATGA 57.055 29.630 0.00 0.00 0.00 3.07
3831 3947 9.950680 AGTTTATACCATCGAAAATTAAGCATG 57.049 29.630 0.00 0.00 0.00 4.06
3834 3950 9.865484 GAGAGTTTATACCATCGAAAATTAAGC 57.135 33.333 0.00 0.00 0.00 3.09
3840 3956 9.362539 GTGTAAGAGAGTTTATACCATCGAAAA 57.637 33.333 0.00 0.00 0.00 2.29
3841 3957 7.977853 GGTGTAAGAGAGTTTATACCATCGAAA 59.022 37.037 6.77 0.00 41.68 3.46
3842 3958 7.417116 GGGTGTAAGAGAGTTTATACCATCGAA 60.417 40.741 11.92 0.00 43.00 3.71
3843 3959 6.040166 GGGTGTAAGAGAGTTTATACCATCGA 59.960 42.308 11.92 0.00 43.00 3.59
3844 3960 6.183360 TGGGTGTAAGAGAGTTTATACCATCG 60.183 42.308 11.92 0.00 43.00 3.84
3845 3961 7.120923 TGGGTGTAAGAGAGTTTATACCATC 57.879 40.000 11.92 0.03 43.00 3.51
3848 3964 8.867097 TCATATGGGTGTAAGAGAGTTTATACC 58.133 37.037 2.13 3.86 41.47 2.73
3851 3967 7.880195 GCATCATATGGGTGTAAGAGAGTTTAT 59.120 37.037 2.13 0.00 0.00 1.40
3852 3968 7.071196 AGCATCATATGGGTGTAAGAGAGTTTA 59.929 37.037 2.13 0.00 0.00 2.01
3853 3969 6.058183 GCATCATATGGGTGTAAGAGAGTTT 58.942 40.000 2.13 0.00 0.00 2.66
3854 3970 5.367937 AGCATCATATGGGTGTAAGAGAGTT 59.632 40.000 2.13 0.00 0.00 3.01
3855 3971 4.904251 AGCATCATATGGGTGTAAGAGAGT 59.096 41.667 2.13 0.00 0.00 3.24
3856 3972 5.011431 TCAGCATCATATGGGTGTAAGAGAG 59.989 44.000 2.13 0.00 34.33 3.20
3857 3973 4.901250 TCAGCATCATATGGGTGTAAGAGA 59.099 41.667 2.13 0.00 34.33 3.10
3858 3974 5.219343 TCAGCATCATATGGGTGTAAGAG 57.781 43.478 2.13 0.00 34.33 2.85
3859 3975 5.628797 TTCAGCATCATATGGGTGTAAGA 57.371 39.130 2.13 0.86 34.33 2.10
3860 3976 6.236409 AGATTCAGCATCATATGGGTGTAAG 58.764 40.000 2.13 0.00 33.75 2.34
3861 3977 6.191657 AGATTCAGCATCATATGGGTGTAA 57.808 37.500 2.13 1.85 33.75 2.41
3863 3979 4.719026 AGATTCAGCATCATATGGGTGT 57.281 40.909 2.13 0.00 33.75 4.16
3864 3980 5.123502 GCTAAGATTCAGCATCATATGGGTG 59.876 44.000 2.13 3.95 38.93 4.61
3866 3982 4.639310 GGCTAAGATTCAGCATCATATGGG 59.361 45.833 2.13 0.00 40.95 4.00
3867 3983 5.123502 GTGGCTAAGATTCAGCATCATATGG 59.876 44.000 2.13 0.00 40.95 2.74
3870 3986 5.294734 TGTGGCTAAGATTCAGCATCATA 57.705 39.130 0.00 0.00 40.95 2.15
3871 3987 4.160642 TGTGGCTAAGATTCAGCATCAT 57.839 40.909 0.00 0.00 40.95 2.45
3872 3988 3.632643 TGTGGCTAAGATTCAGCATCA 57.367 42.857 0.00 0.00 40.95 3.07
3873 3989 4.970662 TTTGTGGCTAAGATTCAGCATC 57.029 40.909 0.00 0.00 40.95 3.91
3874 3990 4.708421 ACATTTGTGGCTAAGATTCAGCAT 59.292 37.500 0.00 0.00 40.95 3.79
3875 3991 4.081406 ACATTTGTGGCTAAGATTCAGCA 58.919 39.130 0.00 0.00 40.95 4.41
3876 3992 4.439289 GGACATTTGTGGCTAAGATTCAGC 60.439 45.833 0.00 0.00 38.35 4.26
3878 3994 4.661222 TGGACATTTGTGGCTAAGATTCA 58.339 39.130 0.00 0.00 0.00 2.57
3881 3997 5.300286 GCTTATGGACATTTGTGGCTAAGAT 59.700 40.000 0.00 0.00 0.00 2.40
3882 3998 4.640201 GCTTATGGACATTTGTGGCTAAGA 59.360 41.667 0.00 0.00 0.00 2.10
3884 4000 4.339748 TGCTTATGGACATTTGTGGCTAA 58.660 39.130 0.00 0.00 0.00 3.09
3885 4001 3.947196 CTGCTTATGGACATTTGTGGCTA 59.053 43.478 0.00 0.00 0.00 3.93
3886 4002 2.756760 CTGCTTATGGACATTTGTGGCT 59.243 45.455 0.00 0.00 0.00 4.75
3887 4003 2.754552 TCTGCTTATGGACATTTGTGGC 59.245 45.455 0.00 0.00 0.00 5.01
3888 4004 5.389859 TTTCTGCTTATGGACATTTGTGG 57.610 39.130 0.00 0.00 0.00 4.17
3889 4005 5.634859 GGTTTTCTGCTTATGGACATTTGTG 59.365 40.000 0.00 0.00 0.00 3.33
3890 4006 5.304101 TGGTTTTCTGCTTATGGACATTTGT 59.696 36.000 0.00 0.00 0.00 2.83
3891 4007 5.782047 TGGTTTTCTGCTTATGGACATTTG 58.218 37.500 0.00 0.00 0.00 2.32
3893 4009 6.267471 TCTTTGGTTTTCTGCTTATGGACATT 59.733 34.615 0.00 0.00 0.00 2.71
3894 4010 5.774690 TCTTTGGTTTTCTGCTTATGGACAT 59.225 36.000 0.00 0.00 0.00 3.06
3896 4012 5.241728 AGTCTTTGGTTTTCTGCTTATGGAC 59.758 40.000 0.00 0.00 0.00 4.02
3898 4014 5.010012 ACAGTCTTTGGTTTTCTGCTTATGG 59.990 40.000 0.00 0.00 0.00 2.74
3899 4015 6.076981 ACAGTCTTTGGTTTTCTGCTTATG 57.923 37.500 0.00 0.00 0.00 1.90
3900 4016 5.241728 GGACAGTCTTTGGTTTTCTGCTTAT 59.758 40.000 0.00 0.00 0.00 1.73
3901 4017 4.578928 GGACAGTCTTTGGTTTTCTGCTTA 59.421 41.667 0.00 0.00 0.00 3.09
3903 4019 2.952310 GGACAGTCTTTGGTTTTCTGCT 59.048 45.455 0.00 0.00 0.00 4.24
3904 4020 2.034685 GGGACAGTCTTTGGTTTTCTGC 59.965 50.000 0.00 0.00 0.00 4.26
3906 4022 2.424379 GGGGGACAGTCTTTGGTTTTCT 60.424 50.000 0.00 0.00 0.00 2.52
3907 4023 1.961394 GGGGGACAGTCTTTGGTTTTC 59.039 52.381 0.00 0.00 0.00 2.29
3908 4024 1.573857 AGGGGGACAGTCTTTGGTTTT 59.426 47.619 0.00 0.00 0.00 2.43
3910 4026 1.145119 GAAGGGGGACAGTCTTTGGTT 59.855 52.381 0.00 0.00 0.00 3.67
3912 4028 0.771127 TGAAGGGGGACAGTCTTTGG 59.229 55.000 0.00 0.00 0.00 3.28
3913 4029 2.821969 CAATGAAGGGGGACAGTCTTTG 59.178 50.000 0.00 0.00 0.00 2.77
3914 4030 2.716424 TCAATGAAGGGGGACAGTCTTT 59.284 45.455 0.00 0.00 0.00 2.52
3915 4031 2.040412 GTCAATGAAGGGGGACAGTCTT 59.960 50.000 0.00 0.00 0.00 3.01
3916 4032 1.630878 GTCAATGAAGGGGGACAGTCT 59.369 52.381 0.00 0.00 0.00 3.24
3917 4033 1.351017 TGTCAATGAAGGGGGACAGTC 59.649 52.381 0.00 0.00 35.51 3.51
3918 4034 1.444933 TGTCAATGAAGGGGGACAGT 58.555 50.000 0.00 0.00 35.51 3.55
3919 4035 2.162681 GTTGTCAATGAAGGGGGACAG 58.837 52.381 0.00 0.00 40.90 3.51
3920 4036 1.496857 TGTTGTCAATGAAGGGGGACA 59.503 47.619 0.00 0.00 38.41 4.02
3921 4037 2.286365 TGTTGTCAATGAAGGGGGAC 57.714 50.000 0.00 0.00 0.00 4.46
3923 4039 2.354003 GCAATGTTGTCAATGAAGGGGG 60.354 50.000 0.00 0.00 0.00 5.40
3924 4040 2.564062 AGCAATGTTGTCAATGAAGGGG 59.436 45.455 0.00 0.00 0.00 4.79
3925 4041 3.947910 AGCAATGTTGTCAATGAAGGG 57.052 42.857 0.00 0.00 0.00 3.95
3926 4042 4.240096 GGAAGCAATGTTGTCAATGAAGG 58.760 43.478 0.00 0.00 0.00 3.46
3927 4043 3.916172 CGGAAGCAATGTTGTCAATGAAG 59.084 43.478 0.00 0.00 0.00 3.02
3929 4045 3.145286 TCGGAAGCAATGTTGTCAATGA 58.855 40.909 0.00 0.00 0.00 2.57
3930 4046 3.557577 TCGGAAGCAATGTTGTCAATG 57.442 42.857 0.00 0.00 0.00 2.82
3931 4047 3.758023 TCATCGGAAGCAATGTTGTCAAT 59.242 39.130 0.00 0.00 0.00 2.57
3932 4048 3.145286 TCATCGGAAGCAATGTTGTCAA 58.855 40.909 0.00 0.00 0.00 3.18
3933 4049 2.743664 CTCATCGGAAGCAATGTTGTCA 59.256 45.455 0.00 0.00 0.00 3.58
3934 4050 2.744202 ACTCATCGGAAGCAATGTTGTC 59.256 45.455 0.00 0.00 0.00 3.18
3936 4052 2.222886 CGACTCATCGGAAGCAATGTTG 60.223 50.000 0.00 0.00 44.99 3.33
3937 4053 2.002586 CGACTCATCGGAAGCAATGTT 58.997 47.619 0.00 0.00 44.99 2.71
3938 4054 1.645034 CGACTCATCGGAAGCAATGT 58.355 50.000 0.00 0.00 44.99 2.71
3949 4065 5.551760 ATCATTGTTCAAACCGACTCATC 57.448 39.130 0.00 0.00 0.00 2.92
3950 4066 6.313905 GTCTATCATTGTTCAAACCGACTCAT 59.686 38.462 0.00 0.00 0.00 2.90
3952 4068 5.063564 GGTCTATCATTGTTCAAACCGACTC 59.936 44.000 0.00 0.00 0.00 3.36
3953 4069 4.935808 GGTCTATCATTGTTCAAACCGACT 59.064 41.667 0.00 0.00 0.00 4.18
3957 4073 4.600062 AGGGGTCTATCATTGTTCAAACC 58.400 43.478 0.00 0.00 0.00 3.27
3958 4074 5.123979 GTGAGGGGTCTATCATTGTTCAAAC 59.876 44.000 0.00 0.00 0.00 2.93
3959 4075 5.014123 AGTGAGGGGTCTATCATTGTTCAAA 59.986 40.000 0.00 0.00 0.00 2.69
3960 4076 4.536090 AGTGAGGGGTCTATCATTGTTCAA 59.464 41.667 0.00 0.00 0.00 2.69
3962 4078 4.762289 AGTGAGGGGTCTATCATTGTTC 57.238 45.455 0.00 0.00 0.00 3.18
3963 4079 5.455326 GCATAGTGAGGGGTCTATCATTGTT 60.455 44.000 0.00 0.00 0.00 2.83
3964 4080 4.040952 GCATAGTGAGGGGTCTATCATTGT 59.959 45.833 0.00 0.00 0.00 2.71
3965 4081 4.285517 AGCATAGTGAGGGGTCTATCATTG 59.714 45.833 0.00 0.00 0.00 2.82
3966 4082 4.285517 CAGCATAGTGAGGGGTCTATCATT 59.714 45.833 0.00 0.00 0.00 2.57
3967 4083 3.837146 CAGCATAGTGAGGGGTCTATCAT 59.163 47.826 0.00 0.00 0.00 2.45
3968 4084 3.117131 TCAGCATAGTGAGGGGTCTATCA 60.117 47.826 0.00 0.00 0.00 2.15
3970 4086 3.619900 TCAGCATAGTGAGGGGTCTAT 57.380 47.619 0.00 0.00 0.00 1.98
3972 4088 2.254152 TTCAGCATAGTGAGGGGTCT 57.746 50.000 0.00 0.00 0.00 3.85
3986 4102 1.406903 AATGGCCCTTGCTATTCAGC 58.593 50.000 0.00 0.00 44.38 4.26
3996 4112 2.024080 TCTAATGCAAGGAATGGCCCTT 60.024 45.455 0.00 0.00 46.91 3.95
3997 4113 1.570501 TCTAATGCAAGGAATGGCCCT 59.429 47.619 0.00 0.00 38.42 5.19
3998 4114 1.959282 CTCTAATGCAAGGAATGGCCC 59.041 52.381 0.00 0.00 37.37 5.80
4000 4116 2.026641 TGCTCTAATGCAAGGAATGGC 58.973 47.619 0.00 0.00 40.29 4.40
4001 4117 3.635373 ACATGCTCTAATGCAAGGAATGG 59.365 43.478 0.00 0.00 46.61 3.16
4002 4118 4.913335 ACATGCTCTAATGCAAGGAATG 57.087 40.909 0.00 0.00 46.61 2.67
4004 4120 5.102953 ACTACATGCTCTAATGCAAGGAA 57.897 39.130 0.00 0.00 46.61 3.36
4005 4121 4.760530 ACTACATGCTCTAATGCAAGGA 57.239 40.909 0.00 0.00 46.61 3.36
4006 4122 4.025396 CGAACTACATGCTCTAATGCAAGG 60.025 45.833 0.00 0.00 46.61 3.61
4007 4123 4.025396 CCGAACTACATGCTCTAATGCAAG 60.025 45.833 0.00 0.00 46.61 4.01
4008 4124 3.871006 CCGAACTACATGCTCTAATGCAA 59.129 43.478 0.00 0.00 46.61 4.08
4010 4126 2.221981 GCCGAACTACATGCTCTAATGC 59.778 50.000 0.00 0.00 0.00 3.56
4011 4127 3.722147 AGCCGAACTACATGCTCTAATG 58.278 45.455 0.00 0.00 0.00 1.90
4012 4128 4.100189 AGAAGCCGAACTACATGCTCTAAT 59.900 41.667 0.00 0.00 32.62 1.73
4013 4129 3.447586 AGAAGCCGAACTACATGCTCTAA 59.552 43.478 0.00 0.00 32.62 2.10
4014 4130 3.024547 AGAAGCCGAACTACATGCTCTA 58.975 45.455 0.00 0.00 32.62 2.43
4015 4131 1.827969 AGAAGCCGAACTACATGCTCT 59.172 47.619 0.00 0.00 32.62 4.09
4019 4135 2.803492 GCCCTAGAAGCCGAACTACATG 60.803 54.545 0.00 0.00 0.00 3.21
4021 4137 0.822164 GCCCTAGAAGCCGAACTACA 59.178 55.000 0.00 0.00 0.00 2.74
4022 4138 0.248949 CGCCCTAGAAGCCGAACTAC 60.249 60.000 0.00 0.00 0.00 2.73
4023 4139 0.682209 ACGCCCTAGAAGCCGAACTA 60.682 55.000 0.00 0.00 0.00 2.24
4024 4140 1.946475 GACGCCCTAGAAGCCGAACT 61.946 60.000 0.00 0.00 0.00 3.01
4025 4141 1.518792 GACGCCCTAGAAGCCGAAC 60.519 63.158 0.00 0.00 0.00 3.95
4026 4142 1.327690 ATGACGCCCTAGAAGCCGAA 61.328 55.000 0.00 0.00 0.00 4.30
4028 4144 1.144057 AATGACGCCCTAGAAGCCG 59.856 57.895 0.00 0.00 0.00 5.52
4029 4145 1.440145 GCAATGACGCCCTAGAAGCC 61.440 60.000 0.00 0.00 0.00 4.35
4030 4146 0.744414 TGCAATGACGCCCTAGAAGC 60.744 55.000 0.00 0.00 0.00 3.86
4031 4147 1.293924 CTGCAATGACGCCCTAGAAG 58.706 55.000 0.00 0.00 0.00 2.85
4032 4148 0.613260 ACTGCAATGACGCCCTAGAA 59.387 50.000 0.00 0.00 0.00 2.10
4033 4149 0.613260 AACTGCAATGACGCCCTAGA 59.387 50.000 0.00 0.00 0.00 2.43
4034 4150 2.309528 TAACTGCAATGACGCCCTAG 57.690 50.000 0.00 0.00 0.00 3.02
4036 4152 1.904287 TTTAACTGCAATGACGCCCT 58.096 45.000 0.00 0.00 0.00 5.19
4037 4153 2.939460 ATTTAACTGCAATGACGCCC 57.061 45.000 0.00 0.00 0.00 6.13
4038 4154 5.424121 AGATATTTAACTGCAATGACGCC 57.576 39.130 0.00 0.00 0.00 5.68
4039 4155 6.486248 TCAAGATATTTAACTGCAATGACGC 58.514 36.000 0.00 0.00 0.00 5.19
4040 4156 9.507280 AATTCAAGATATTTAACTGCAATGACG 57.493 29.630 0.00 0.00 0.00 4.35
4043 4159 9.806203 TCCAATTCAAGATATTTAACTGCAATG 57.194 29.630 0.00 0.00 0.00 2.82
4044 4160 9.807649 GTCCAATTCAAGATATTTAACTGCAAT 57.192 29.630 0.00 0.00 0.00 3.56
4045 4161 8.250332 GGTCCAATTCAAGATATTTAACTGCAA 58.750 33.333 0.00 0.00 0.00 4.08
4113 4530 1.006086 TGCTTTCAGTCACACACGTG 58.994 50.000 15.48 15.48 45.08 4.49
4130 4551 1.246056 TTGCAGCCCTGACTTGATGC 61.246 55.000 0.00 0.00 0.00 3.91
4232 4662 3.609853 AGCTCAAATGTCGGCTTAATGA 58.390 40.909 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.