Multiple sequence alignment - TraesCS7D01G443600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G443600 chr7D 100.000 4358 0 0 1 4358 563694874 563699231 0.000000e+00 8048.0
1 TraesCS7D01G443600 chr7D 98.450 3677 42 6 202 3877 156073918 156077580 0.000000e+00 6460.0
2 TraesCS7D01G443600 chr7D 99.687 1279 4 0 789 2067 563701394 563700116 0.000000e+00 2340.0
3 TraesCS7D01G443600 chr7D 98.958 576 6 0 202 777 563702128 563701553 0.000000e+00 1031.0
4 TraesCS7D01G443600 chr7D 98.879 446 4 1 3434 3879 94792802 94793246 0.000000e+00 795.0
5 TraesCS7D01G443600 chr7D 98.526 407 6 0 793 1199 94792404 94792810 0.000000e+00 719.0
6 TraesCS7D01G443600 chr7D 93.797 403 20 3 789 1186 529767592 529767994 6.240000e-168 601.0
7 TraesCS7D01G443600 chr7D 98.125 320 6 0 444 763 94792004 94792323 3.810000e-155 558.0
8 TraesCS7D01G443600 chr7D 98.726 157 2 0 245 401 94791850 94792006 3.320000e-71 279.0
9 TraesCS7D01G443600 chr7D 91.071 168 11 2 202 368 529767022 529767186 1.580000e-54 224.0
10 TraesCS7D01G443600 chr2A 95.694 3669 119 14 214 3877 25048427 25044793 0.000000e+00 5864.0
11 TraesCS7D01G443600 chr2A 85.664 572 42 20 3340 3878 88322730 88323294 2.270000e-157 566.0
12 TraesCS7D01G443600 chr2A 80.625 480 57 17 198 668 88322020 88322472 5.400000e-89 339.0
13 TraesCS7D01G443600 chr4A 96.936 3003 82 6 883 3879 566907811 566904813 0.000000e+00 5027.0
14 TraesCS7D01G443600 chr4A 82.426 2259 382 15 1262 3514 621425631 621423382 0.000000e+00 1958.0
15 TraesCS7D01G443600 chr4A 82.518 2248 372 21 1274 3511 617932584 617930348 0.000000e+00 1954.0
16 TraesCS7D01G443600 chr4A 80.332 2232 417 17 1274 3494 35255911 35258131 0.000000e+00 1670.0
17 TraesCS7D01G443600 chr4A 96.000 50 2 0 858 907 566907812 566907861 1.000000e-11 82.4
18 TraesCS7D01G443600 chr2B 92.011 3530 206 28 371 3878 173185829 173189304 0.000000e+00 4887.0
19 TraesCS7D01G443600 chr2B 83.123 1268 209 5 1262 2527 34337488 34338752 0.000000e+00 1151.0
20 TraesCS7D01G443600 chr2B 91.045 201 18 0 1 201 124906483 124906283 5.550000e-69 272.0
21 TraesCS7D01G443600 chr7B 81.980 2253 389 16 1262 3506 37118022 37115779 0.000000e+00 1895.0
22 TraesCS7D01G443600 chr7B 87.774 319 38 1 3928 4246 77865466 77865783 5.320000e-99 372.0
23 TraesCS7D01G443600 chr7B 89.055 201 22 0 1 201 705754991 705754791 2.600000e-62 250.0
24 TraesCS7D01G443600 chr3A 81.593 2097 369 10 1401 3495 698263439 698261358 0.000000e+00 1718.0
25 TraesCS7D01G443600 chr3A 95.522 201 9 0 1 201 626600156 626599956 5.440000e-84 322.0
26 TraesCS7D01G443600 chr3A 79.618 157 22 4 3729 3877 725089340 725089494 2.140000e-18 104.0
27 TraesCS7D01G443600 chr3B 91.170 487 37 3 3878 4358 23636439 23635953 0.000000e+00 656.0
28 TraesCS7D01G443600 chr1D 93.797 403 21 2 788 1186 340561097 340561499 1.730000e-168 603.0
29 TraesCS7D01G443600 chr1D 82.160 611 50 25 198 770 340560523 340561112 1.830000e-128 470.0
30 TraesCS7D01G443600 chr6A 85.140 572 44 21 3340 3878 214570937 214570374 8.240000e-152 547.0
31 TraesCS7D01G443600 chr6A 78.859 596 78 33 198 772 214571651 214571083 4.140000e-95 359.0
32 TraesCS7D01G443600 chr6A 87.168 226 19 3 3662 3877 46577587 46577362 9.360000e-62 248.0
33 TraesCS7D01G443600 chr5B 84.991 573 45 20 3340 3878 536844843 536845408 1.070000e-150 544.0
34 TraesCS7D01G443600 chr5B 78.752 593 78 29 201 772 536844133 536844698 1.930000e-93 353.0
35 TraesCS7D01G443600 chr6B 89.130 322 29 5 3926 4246 288157306 288156990 3.160000e-106 396.0
36 TraesCS7D01G443600 chr4B 88.365 318 36 1 3920 4237 98454711 98455027 8.840000e-102 381.0
37 TraesCS7D01G443600 chr5A 79.188 591 77 29 202 772 396227462 396226898 6.890000e-98 368.0
38 TraesCS7D01G443600 chr1A 82.633 357 38 10 3195 3548 14428719 14428384 1.190000e-75 294.0
39 TraesCS7D01G443600 chr1A 80.000 155 23 4 3729 3877 22336093 22336245 1.660000e-19 108.0
40 TraesCS7D01G443600 chr7A 89.552 201 21 0 1 201 627660288 627660488 5.590000e-64 255.0
41 TraesCS7D01G443600 chr7A 86.391 169 20 3 202 368 692329968 692330135 9.630000e-42 182.0
42 TraesCS7D01G443600 chr1B 87.059 170 19 3 201 368 28441612 28441780 5.750000e-44 189.0
43 TraesCS7D01G443600 chr1B 93.750 80 5 0 589 668 28441964 28442043 2.130000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G443600 chr7D 563694874 563699231 4357 False 8048.00 8048 100.0000 1 4358 1 chr7D.!!$F2 4357
1 TraesCS7D01G443600 chr7D 156073918 156077580 3662 False 6460.00 6460 98.4500 202 3877 1 chr7D.!!$F1 3675
2 TraesCS7D01G443600 chr7D 563700116 563702128 2012 True 1685.50 2340 99.3225 202 2067 2 chr7D.!!$R1 1865
3 TraesCS7D01G443600 chr7D 94791850 94793246 1396 False 587.75 795 98.5640 245 3879 4 chr7D.!!$F3 3634
4 TraesCS7D01G443600 chr7D 529767022 529767994 972 False 412.50 601 92.4340 202 1186 2 chr7D.!!$F4 984
5 TraesCS7D01G443600 chr2A 25044793 25048427 3634 True 5864.00 5864 95.6940 214 3877 1 chr2A.!!$R1 3663
6 TraesCS7D01G443600 chr2A 88322020 88323294 1274 False 452.50 566 83.1445 198 3878 2 chr2A.!!$F1 3680
7 TraesCS7D01G443600 chr4A 566904813 566907811 2998 True 5027.00 5027 96.9360 883 3879 1 chr4A.!!$R1 2996
8 TraesCS7D01G443600 chr4A 621423382 621425631 2249 True 1958.00 1958 82.4260 1262 3514 1 chr4A.!!$R3 2252
9 TraesCS7D01G443600 chr4A 617930348 617932584 2236 True 1954.00 1954 82.5180 1274 3511 1 chr4A.!!$R2 2237
10 TraesCS7D01G443600 chr4A 35255911 35258131 2220 False 1670.00 1670 80.3320 1274 3494 1 chr4A.!!$F1 2220
11 TraesCS7D01G443600 chr2B 173185829 173189304 3475 False 4887.00 4887 92.0110 371 3878 1 chr2B.!!$F2 3507
12 TraesCS7D01G443600 chr2B 34337488 34338752 1264 False 1151.00 1151 83.1230 1262 2527 1 chr2B.!!$F1 1265
13 TraesCS7D01G443600 chr7B 37115779 37118022 2243 True 1895.00 1895 81.9800 1262 3506 1 chr7B.!!$R1 2244
14 TraesCS7D01G443600 chr3A 698261358 698263439 2081 True 1718.00 1718 81.5930 1401 3495 1 chr3A.!!$R2 2094
15 TraesCS7D01G443600 chr1D 340560523 340561499 976 False 536.50 603 87.9785 198 1186 2 chr1D.!!$F1 988
16 TraesCS7D01G443600 chr6A 214570374 214571651 1277 True 453.00 547 81.9995 198 3878 2 chr6A.!!$R2 3680
17 TraesCS7D01G443600 chr5B 536844133 536845408 1275 False 448.50 544 81.8715 201 3878 2 chr5B.!!$F1 3677
18 TraesCS7D01G443600 chr5A 396226898 396227462 564 True 368.00 368 79.1880 202 772 1 chr5A.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.035056 GCTGGTTGGTGCAGGTAGAT 60.035 55.0 0.00 0.0 0.00 1.98 F
164 165 0.038159 GGCGTATTCCCTCCGAGATG 60.038 60.0 0.00 0.0 0.00 2.90 F
780 849 0.178978 GCATCTCAATTCCCTCCCCC 60.179 60.0 0.00 0.0 0.00 5.40 F
2357 2587 6.295249 TCAATCTTACACTTTGTGACATGGA 58.705 36.0 4.61 0.0 36.96 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1166 1390 7.795482 TTTTCCTCGACTAAGTTTTCATCAA 57.205 32.000 0.00 0.0 0.00 2.57 R
2357 2587 7.123247 AGGTCATAGCTTTGCTACATGATTTTT 59.877 33.333 0.00 0.0 44.24 1.94 R
2523 2758 2.965831 AGGAGCTTGATACCGAATAGCA 59.034 45.455 0.00 0.0 34.37 3.49 R
4127 4412 0.031585 CACCTGGTCGACTTGAACGA 59.968 55.000 16.46 0.0 36.96 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.241367 AGTAAAGCAAAAATAAATACTGGGTCG 58.759 33.333 0.00 0.00 0.00 4.79
38 39 6.584185 AAGCAAAAATAAATACTGGGTCGT 57.416 33.333 0.00 0.00 0.00 4.34
39 40 6.190954 AGCAAAAATAAATACTGGGTCGTC 57.809 37.500 0.00 0.00 0.00 4.20
40 41 5.025826 GCAAAAATAAATACTGGGTCGTCG 58.974 41.667 0.00 0.00 0.00 5.12
41 42 5.391203 GCAAAAATAAATACTGGGTCGTCGT 60.391 40.000 0.00 0.00 0.00 4.34
42 43 6.183360 GCAAAAATAAATACTGGGTCGTCGTA 60.183 38.462 0.00 0.00 0.00 3.43
43 44 6.892310 AAAATAAATACTGGGTCGTCGTAC 57.108 37.500 0.00 0.00 0.00 3.67
44 45 5.841957 AATAAATACTGGGTCGTCGTACT 57.158 39.130 0.00 0.00 0.00 2.73
45 46 5.841957 ATAAATACTGGGTCGTCGTACTT 57.158 39.130 0.00 0.00 0.00 2.24
46 47 6.942532 ATAAATACTGGGTCGTCGTACTTA 57.057 37.500 0.00 0.00 0.00 2.24
47 48 5.841957 AAATACTGGGTCGTCGTACTTAT 57.158 39.130 0.00 0.00 0.00 1.73
48 49 6.942532 AAATACTGGGTCGTCGTACTTATA 57.057 37.500 0.00 0.00 0.00 0.98
49 50 6.942532 AATACTGGGTCGTCGTACTTATAA 57.057 37.500 0.00 0.00 0.00 0.98
50 51 4.622701 ACTGGGTCGTCGTACTTATAAC 57.377 45.455 0.00 0.00 0.00 1.89
51 52 4.265073 ACTGGGTCGTCGTACTTATAACT 58.735 43.478 0.00 0.00 0.00 2.24
52 53 4.702131 ACTGGGTCGTCGTACTTATAACTT 59.298 41.667 0.00 0.00 0.00 2.66
53 54 5.880332 ACTGGGTCGTCGTACTTATAACTTA 59.120 40.000 0.00 0.00 0.00 2.24
54 55 6.119144 TGGGTCGTCGTACTTATAACTTAC 57.881 41.667 0.00 0.00 0.00 2.34
55 56 5.880332 TGGGTCGTCGTACTTATAACTTACT 59.120 40.000 0.00 0.00 0.00 2.24
56 57 6.374333 TGGGTCGTCGTACTTATAACTTACTT 59.626 38.462 0.00 0.00 0.00 2.24
57 58 6.688813 GGGTCGTCGTACTTATAACTTACTTG 59.311 42.308 0.00 0.00 0.00 3.16
58 59 6.195428 GGTCGTCGTACTTATAACTTACTTGC 59.805 42.308 0.00 0.00 0.00 4.01
59 60 6.963805 GTCGTCGTACTTATAACTTACTTGCT 59.036 38.462 0.00 0.00 0.00 3.91
60 61 6.963242 TCGTCGTACTTATAACTTACTTGCTG 59.037 38.462 0.00 0.00 0.00 4.41
61 62 6.195983 CGTCGTACTTATAACTTACTTGCTGG 59.804 42.308 0.00 0.00 0.00 4.85
62 63 7.031975 GTCGTACTTATAACTTACTTGCTGGT 58.968 38.462 0.00 0.00 0.00 4.00
63 64 7.543520 GTCGTACTTATAACTTACTTGCTGGTT 59.456 37.037 0.00 0.00 0.00 3.67
64 65 7.543172 TCGTACTTATAACTTACTTGCTGGTTG 59.457 37.037 0.00 0.00 0.00 3.77
65 66 7.201496 CGTACTTATAACTTACTTGCTGGTTGG 60.201 40.741 0.00 0.00 0.00 3.77
66 67 6.540083 ACTTATAACTTACTTGCTGGTTGGT 58.460 36.000 0.00 0.00 0.00 3.67
67 68 6.430000 ACTTATAACTTACTTGCTGGTTGGTG 59.570 38.462 0.00 0.00 0.00 4.17
68 69 1.318576 ACTTACTTGCTGGTTGGTGC 58.681 50.000 0.00 0.00 0.00 5.01
69 70 1.317613 CTTACTTGCTGGTTGGTGCA 58.682 50.000 0.00 0.00 37.42 4.57
70 71 1.267806 CTTACTTGCTGGTTGGTGCAG 59.732 52.381 0.00 0.00 40.46 4.41
71 72 0.537143 TACTTGCTGGTTGGTGCAGG 60.537 55.000 0.00 0.00 40.46 4.85
72 73 1.829533 CTTGCTGGTTGGTGCAGGT 60.830 57.895 0.00 0.00 40.46 4.00
73 74 0.537143 CTTGCTGGTTGGTGCAGGTA 60.537 55.000 0.00 0.00 40.46 3.08
74 75 0.537143 TTGCTGGTTGGTGCAGGTAG 60.537 55.000 0.00 0.00 40.46 3.18
75 76 1.374947 GCTGGTTGGTGCAGGTAGA 59.625 57.895 0.00 0.00 0.00 2.59
76 77 0.035056 GCTGGTTGGTGCAGGTAGAT 60.035 55.000 0.00 0.00 0.00 1.98
77 78 1.209504 GCTGGTTGGTGCAGGTAGATA 59.790 52.381 0.00 0.00 0.00 1.98
78 79 2.158755 GCTGGTTGGTGCAGGTAGATAT 60.159 50.000 0.00 0.00 0.00 1.63
79 80 3.733337 CTGGTTGGTGCAGGTAGATATC 58.267 50.000 0.00 0.00 0.00 1.63
80 81 2.438021 TGGTTGGTGCAGGTAGATATCC 59.562 50.000 0.00 0.00 0.00 2.59
81 82 2.438021 GGTTGGTGCAGGTAGATATCCA 59.562 50.000 0.00 0.00 0.00 3.41
82 83 3.073062 GGTTGGTGCAGGTAGATATCCAT 59.927 47.826 0.00 0.00 0.00 3.41
83 84 4.319177 GTTGGTGCAGGTAGATATCCATC 58.681 47.826 0.00 0.00 0.00 3.51
84 85 2.562738 TGGTGCAGGTAGATATCCATCG 59.437 50.000 0.00 0.00 36.20 3.84
85 86 2.563179 GGTGCAGGTAGATATCCATCGT 59.437 50.000 0.00 0.00 36.20 3.73
86 87 3.006967 GGTGCAGGTAGATATCCATCGTT 59.993 47.826 0.00 0.00 36.20 3.85
87 88 4.503296 GGTGCAGGTAGATATCCATCGTTT 60.503 45.833 0.00 0.00 36.20 3.60
88 89 5.057149 GTGCAGGTAGATATCCATCGTTTT 58.943 41.667 0.00 0.00 36.20 2.43
89 90 5.050091 GTGCAGGTAGATATCCATCGTTTTG 60.050 44.000 0.00 0.00 36.20 2.44
90 91 5.163353 TGCAGGTAGATATCCATCGTTTTGA 60.163 40.000 0.00 0.00 36.20 2.69
91 92 5.758296 GCAGGTAGATATCCATCGTTTTGAA 59.242 40.000 0.00 0.00 36.20 2.69
92 93 6.292919 GCAGGTAGATATCCATCGTTTTGAAC 60.293 42.308 0.00 0.00 36.20 3.18
93 94 6.761242 CAGGTAGATATCCATCGTTTTGAACA 59.239 38.462 0.00 0.00 36.20 3.18
94 95 7.442364 CAGGTAGATATCCATCGTTTTGAACAT 59.558 37.037 0.00 0.00 36.20 2.71
95 96 7.442364 AGGTAGATATCCATCGTTTTGAACATG 59.558 37.037 0.00 0.00 36.20 3.21
96 97 6.064846 AGATATCCATCGTTTTGAACATGC 57.935 37.500 0.00 0.00 36.20 4.06
97 98 5.589855 AGATATCCATCGTTTTGAACATGCA 59.410 36.000 0.00 0.00 36.20 3.96
98 99 4.724074 ATCCATCGTTTTGAACATGCAT 57.276 36.364 0.00 0.00 0.00 3.96
99 100 3.835779 TCCATCGTTTTGAACATGCATG 58.164 40.909 25.09 25.09 0.00 4.06
100 101 3.505293 TCCATCGTTTTGAACATGCATGA 59.495 39.130 32.75 8.19 0.00 3.07
101 102 4.158209 TCCATCGTTTTGAACATGCATGAT 59.842 37.500 32.75 22.02 0.00 2.45
102 103 4.501559 CCATCGTTTTGAACATGCATGATC 59.498 41.667 32.75 28.76 0.00 2.92
103 104 4.762956 TCGTTTTGAACATGCATGATCA 57.237 36.364 29.48 29.48 37.74 2.92
104 105 5.118642 TCGTTTTGAACATGCATGATCAA 57.881 34.783 35.17 35.17 44.38 2.57
105 106 4.916831 TCGTTTTGAACATGCATGATCAAC 59.083 37.500 37.33 29.59 45.27 3.18
106 107 4.680567 CGTTTTGAACATGCATGATCAACA 59.319 37.500 37.33 31.55 45.27 3.33
107 108 5.387649 CGTTTTGAACATGCATGATCAACAC 60.388 40.000 35.47 35.47 45.27 3.32
108 109 3.853831 TGAACATGCATGATCAACACC 57.146 42.857 30.59 10.03 36.78 4.16
109 110 2.162008 TGAACATGCATGATCAACACCG 59.838 45.455 30.59 4.63 36.78 4.94
110 111 2.112380 ACATGCATGATCAACACCGA 57.888 45.000 32.75 0.00 0.00 4.69
111 112 2.011947 ACATGCATGATCAACACCGAG 58.988 47.619 32.75 1.77 0.00 4.63
112 113 2.282407 CATGCATGATCAACACCGAGA 58.718 47.619 22.59 0.00 0.00 4.04
113 114 2.696989 TGCATGATCAACACCGAGAT 57.303 45.000 0.00 0.00 0.00 2.75
114 115 2.554142 TGCATGATCAACACCGAGATC 58.446 47.619 0.00 0.00 40.75 2.75
117 118 2.299993 TGATCAACACCGAGATCAGC 57.700 50.000 0.00 0.00 44.04 4.26
118 119 1.203928 GATCAACACCGAGATCAGCG 58.796 55.000 0.00 0.00 40.23 5.18
119 120 0.817654 ATCAACACCGAGATCAGCGA 59.182 50.000 9.25 0.00 0.00 4.93
120 121 0.171231 TCAACACCGAGATCAGCGAG 59.829 55.000 9.25 4.74 0.00 5.03
121 122 0.171231 CAACACCGAGATCAGCGAGA 59.829 55.000 9.25 0.00 0.00 4.04
122 123 1.107114 AACACCGAGATCAGCGAGAT 58.893 50.000 9.25 0.00 40.48 2.75
123 124 1.107114 ACACCGAGATCAGCGAGATT 58.893 50.000 9.25 0.00 37.00 2.40
124 125 1.478510 ACACCGAGATCAGCGAGATTT 59.521 47.619 9.25 0.00 37.00 2.17
125 126 2.688446 ACACCGAGATCAGCGAGATTTA 59.312 45.455 9.25 0.00 37.00 1.40
126 127 3.046390 CACCGAGATCAGCGAGATTTAC 58.954 50.000 9.25 0.00 37.00 2.01
127 128 2.688446 ACCGAGATCAGCGAGATTTACA 59.312 45.455 9.25 0.00 37.00 2.41
128 129 3.046390 CCGAGATCAGCGAGATTTACAC 58.954 50.000 9.25 0.00 37.00 2.90
129 130 3.046390 CGAGATCAGCGAGATTTACACC 58.954 50.000 2.22 0.00 37.00 4.16
130 131 3.489229 CGAGATCAGCGAGATTTACACCA 60.489 47.826 2.22 0.00 37.00 4.17
131 132 4.047822 GAGATCAGCGAGATTTACACCAG 58.952 47.826 0.00 0.00 37.00 4.00
132 133 2.672961 TCAGCGAGATTTACACCAGG 57.327 50.000 0.00 0.00 0.00 4.45
133 134 2.176045 TCAGCGAGATTTACACCAGGA 58.824 47.619 0.00 0.00 0.00 3.86
134 135 2.094182 TCAGCGAGATTTACACCAGGAC 60.094 50.000 0.00 0.00 0.00 3.85
135 136 2.093973 CAGCGAGATTTACACCAGGACT 60.094 50.000 0.00 0.00 0.00 3.85
136 137 2.567615 AGCGAGATTTACACCAGGACTT 59.432 45.455 0.00 0.00 0.00 3.01
137 138 3.008049 AGCGAGATTTACACCAGGACTTT 59.992 43.478 0.00 0.00 0.00 2.66
138 139 4.222145 AGCGAGATTTACACCAGGACTTTA 59.778 41.667 0.00 0.00 0.00 1.85
139 140 5.104900 AGCGAGATTTACACCAGGACTTTAT 60.105 40.000 0.00 0.00 0.00 1.40
140 141 5.234543 GCGAGATTTACACCAGGACTTTATC 59.765 44.000 0.00 0.00 0.00 1.75
141 142 6.338146 CGAGATTTACACCAGGACTTTATCA 58.662 40.000 0.00 0.00 0.00 2.15
142 143 6.255887 CGAGATTTACACCAGGACTTTATCAC 59.744 42.308 0.00 0.00 0.00 3.06
143 144 6.106673 AGATTTACACCAGGACTTTATCACG 58.893 40.000 0.00 0.00 0.00 4.35
144 145 4.877378 TTACACCAGGACTTTATCACGT 57.123 40.909 0.00 0.00 0.00 4.49
145 146 3.040147 ACACCAGGACTTTATCACGTG 57.960 47.619 9.94 9.94 0.00 4.49
146 147 2.289444 ACACCAGGACTTTATCACGTGG 60.289 50.000 17.00 0.90 42.73 4.94
147 148 1.338769 ACCAGGACTTTATCACGTGGC 60.339 52.381 17.00 0.00 41.40 5.01
148 149 0.999406 CAGGACTTTATCACGTGGCG 59.001 55.000 17.00 2.50 0.00 5.69
149 150 0.606604 AGGACTTTATCACGTGGCGT 59.393 50.000 17.00 5.80 42.36 5.68
150 151 1.820519 AGGACTTTATCACGTGGCGTA 59.179 47.619 17.00 3.96 38.32 4.42
151 152 2.429610 AGGACTTTATCACGTGGCGTAT 59.570 45.455 17.00 4.06 38.32 3.06
152 153 3.118884 AGGACTTTATCACGTGGCGTATT 60.119 43.478 17.00 0.00 38.32 1.89
153 154 3.244579 GGACTTTATCACGTGGCGTATTC 59.755 47.826 17.00 6.16 38.32 1.75
154 155 3.192466 ACTTTATCACGTGGCGTATTCC 58.808 45.455 17.00 0.00 38.32 3.01
155 156 2.228138 TTATCACGTGGCGTATTCCC 57.772 50.000 17.00 0.00 38.32 3.97
156 157 1.405872 TATCACGTGGCGTATTCCCT 58.594 50.000 17.00 0.00 38.32 4.20
157 158 0.104304 ATCACGTGGCGTATTCCCTC 59.896 55.000 17.00 0.00 38.32 4.30
158 159 1.520787 CACGTGGCGTATTCCCTCC 60.521 63.158 7.95 0.00 38.32 4.30
159 160 2.279252 CGTGGCGTATTCCCTCCG 60.279 66.667 0.00 0.00 0.00 4.63
160 161 2.777972 CGTGGCGTATTCCCTCCGA 61.778 63.158 0.00 0.00 0.00 4.55
161 162 1.067582 GTGGCGTATTCCCTCCGAG 59.932 63.158 0.00 0.00 0.00 4.63
162 163 1.076559 TGGCGTATTCCCTCCGAGA 60.077 57.895 0.00 0.00 0.00 4.04
163 164 0.469331 TGGCGTATTCCCTCCGAGAT 60.469 55.000 0.00 0.00 0.00 2.75
164 165 0.038159 GGCGTATTCCCTCCGAGATG 60.038 60.000 0.00 0.00 0.00 2.90
165 166 0.959553 GCGTATTCCCTCCGAGATGA 59.040 55.000 0.00 0.00 0.00 2.92
166 167 1.068194 GCGTATTCCCTCCGAGATGAG 60.068 57.143 0.00 0.00 0.00 2.90
167 168 2.505405 CGTATTCCCTCCGAGATGAGA 58.495 52.381 0.00 0.00 34.11 3.27
168 169 2.226912 CGTATTCCCTCCGAGATGAGAC 59.773 54.545 0.00 0.00 34.11 3.36
169 170 1.710816 ATTCCCTCCGAGATGAGACC 58.289 55.000 0.00 0.00 34.11 3.85
170 171 0.335019 TTCCCTCCGAGATGAGACCA 59.665 55.000 0.00 0.00 34.11 4.02
171 172 0.558220 TCCCTCCGAGATGAGACCAT 59.442 55.000 0.00 0.00 34.11 3.55
172 173 0.678395 CCCTCCGAGATGAGACCATG 59.322 60.000 0.00 0.00 34.11 3.66
173 174 0.678395 CCTCCGAGATGAGACCATGG 59.322 60.000 11.19 11.19 34.11 3.66
174 175 1.697284 CTCCGAGATGAGACCATGGA 58.303 55.000 21.47 0.00 34.11 3.41
175 176 1.339610 CTCCGAGATGAGACCATGGAC 59.660 57.143 21.47 13.40 34.11 4.02
176 177 1.114627 CCGAGATGAGACCATGGACA 58.885 55.000 21.47 15.41 32.09 4.02
177 178 1.690893 CCGAGATGAGACCATGGACAT 59.309 52.381 21.47 19.31 32.09 3.06
178 179 2.103771 CCGAGATGAGACCATGGACATT 59.896 50.000 21.47 10.95 32.09 2.71
179 180 3.388308 CGAGATGAGACCATGGACATTC 58.612 50.000 21.47 16.49 32.09 2.67
180 181 3.069300 CGAGATGAGACCATGGACATTCT 59.931 47.826 21.47 15.05 32.09 2.40
181 182 4.442612 CGAGATGAGACCATGGACATTCTT 60.443 45.833 21.47 5.18 32.09 2.52
182 183 5.435291 GAGATGAGACCATGGACATTCTTT 58.565 41.667 21.47 2.60 32.09 2.52
183 184 5.435291 AGATGAGACCATGGACATTCTTTC 58.565 41.667 21.47 11.39 32.09 2.62
184 185 3.955471 TGAGACCATGGACATTCTTTCC 58.045 45.455 21.47 0.00 0.00 3.13
185 186 3.282885 GAGACCATGGACATTCTTTCCC 58.717 50.000 21.47 0.00 31.33 3.97
186 187 2.922283 AGACCATGGACATTCTTTCCCT 59.078 45.455 21.47 0.00 31.33 4.20
187 188 4.111577 AGACCATGGACATTCTTTCCCTA 58.888 43.478 21.47 0.00 31.33 3.53
188 189 4.728860 AGACCATGGACATTCTTTCCCTAT 59.271 41.667 21.47 0.00 31.33 2.57
189 190 5.911178 AGACCATGGACATTCTTTCCCTATA 59.089 40.000 21.47 0.00 31.33 1.31
190 191 6.564152 AGACCATGGACATTCTTTCCCTATAT 59.436 38.462 21.47 0.00 31.33 0.86
191 192 6.784031 ACCATGGACATTCTTTCCCTATATC 58.216 40.000 21.47 0.00 31.33 1.63
192 193 6.332635 ACCATGGACATTCTTTCCCTATATCA 59.667 38.462 21.47 0.00 31.33 2.15
193 194 7.147141 ACCATGGACATTCTTTCCCTATATCAA 60.147 37.037 21.47 0.00 31.33 2.57
194 195 7.392673 CCATGGACATTCTTTCCCTATATCAAG 59.607 40.741 5.56 0.00 31.33 3.02
195 196 7.690454 TGGACATTCTTTCCCTATATCAAGA 57.310 36.000 0.00 0.00 31.33 3.02
196 197 7.509546 TGGACATTCTTTCCCTATATCAAGAC 58.490 38.462 0.00 0.00 31.33 3.01
355 365 1.755783 GCCCAGCCCATGAAGAAGG 60.756 63.158 0.00 0.00 0.00 3.46
691 760 4.069232 CAGAGGCGAGCCGGTCAA 62.069 66.667 8.63 0.00 41.95 3.18
779 848 0.552848 TGCATCTCAATTCCCTCCCC 59.447 55.000 0.00 0.00 0.00 4.81
780 849 0.178978 GCATCTCAATTCCCTCCCCC 60.179 60.000 0.00 0.00 0.00 5.40
1166 1390 8.902806 TGTTCATAGTGTTGAAGAAGAACAATT 58.097 29.630 0.00 0.00 40.50 2.32
2357 2587 6.295249 TCAATCTTACACTTTGTGACATGGA 58.705 36.000 4.61 0.00 36.96 3.41
2523 2758 5.875359 GGAGAGTCGAATAAAAAGTGTCCAT 59.125 40.000 0.00 0.00 0.00 3.41
2956 3202 2.435586 CACAAGCAGCCGAGGAGG 60.436 66.667 0.00 0.00 44.97 4.30
2957 3203 2.604686 ACAAGCAGCCGAGGAGGA 60.605 61.111 0.00 0.00 45.00 3.71
2958 3204 2.186384 CAAGCAGCCGAGGAGGAG 59.814 66.667 0.00 0.00 45.00 3.69
3844 4129 1.200020 GGCCCATTTTCTCAGTTCACG 59.800 52.381 0.00 0.00 0.00 4.35
3893 4178 4.772678 GCCCAATTCAGGCCTTCT 57.227 55.556 0.00 0.00 45.16 2.85
3894 4179 2.498077 GCCCAATTCAGGCCTTCTC 58.502 57.895 0.00 0.00 45.16 2.87
3895 4180 1.039785 GCCCAATTCAGGCCTTCTCC 61.040 60.000 0.00 0.00 45.16 3.71
3896 4181 0.332632 CCCAATTCAGGCCTTCTCCA 59.667 55.000 0.00 0.00 0.00 3.86
3897 4182 1.063417 CCCAATTCAGGCCTTCTCCAT 60.063 52.381 0.00 0.00 0.00 3.41
3898 4183 2.029623 CCAATTCAGGCCTTCTCCATG 58.970 52.381 0.00 0.00 0.00 3.66
3899 4184 2.029623 CAATTCAGGCCTTCTCCATGG 58.970 52.381 0.00 4.97 0.00 3.66
3904 4189 2.832201 GCCTTCTCCATGGCTGCC 60.832 66.667 12.87 12.87 45.26 4.85
3905 4190 3.004951 CCTTCTCCATGGCTGCCT 58.995 61.111 21.03 2.27 0.00 4.75
3906 4191 1.153005 CCTTCTCCATGGCTGCCTC 60.153 63.158 21.03 0.00 0.00 4.70
3907 4192 1.633915 CCTTCTCCATGGCTGCCTCT 61.634 60.000 21.03 4.24 0.00 3.69
3908 4193 0.464013 CTTCTCCATGGCTGCCTCTG 60.464 60.000 21.03 16.33 0.00 3.35
3909 4194 1.918467 TTCTCCATGGCTGCCTCTGG 61.918 60.000 25.69 25.69 0.00 3.86
3910 4195 2.285592 TCCATGGCTGCCTCTGGA 60.286 61.111 28.42 28.42 35.04 3.86
3911 4196 1.695239 TCCATGGCTGCCTCTGGAT 60.695 57.895 28.42 10.36 33.43 3.41
3912 4197 1.228184 CCATGGCTGCCTCTGGATC 60.228 63.158 26.84 0.00 31.68 3.36
3913 4198 1.228184 CATGGCTGCCTCTGGATCC 60.228 63.158 21.03 4.20 0.00 3.36
3914 4199 1.385631 ATGGCTGCCTCTGGATCCT 60.386 57.895 21.03 0.00 0.00 3.24
3915 4200 1.417288 ATGGCTGCCTCTGGATCCTC 61.417 60.000 21.03 0.00 0.00 3.71
3916 4201 2.420890 GCTGCCTCTGGATCCTCG 59.579 66.667 14.23 4.22 0.00 4.63
3917 4202 2.430610 GCTGCCTCTGGATCCTCGT 61.431 63.158 14.23 0.00 0.00 4.18
3918 4203 1.739049 CTGCCTCTGGATCCTCGTC 59.261 63.158 14.23 0.00 0.00 4.20
3919 4204 1.743321 CTGCCTCTGGATCCTCGTCC 61.743 65.000 14.23 0.00 38.81 4.79
3920 4205 1.456705 GCCTCTGGATCCTCGTCCT 60.457 63.158 14.23 0.00 39.12 3.85
3921 4206 1.460273 GCCTCTGGATCCTCGTCCTC 61.460 65.000 14.23 0.00 39.12 3.71
3922 4207 0.825840 CCTCTGGATCCTCGTCCTCC 60.826 65.000 14.23 0.00 39.12 4.30
3923 4208 1.152943 TCTGGATCCTCGTCCTCCG 60.153 63.158 14.23 0.00 39.12 4.63
3924 4209 2.833582 TGGATCCTCGTCCTCCGC 60.834 66.667 14.23 0.00 39.12 5.54
3925 4210 3.607661 GGATCCTCGTCCTCCGCC 61.608 72.222 3.84 0.00 35.32 6.13
3926 4211 3.967335 GATCCTCGTCCTCCGCCG 61.967 72.222 0.00 0.00 36.19 6.46
3952 4237 2.815384 GAGCCAGGAGGTCCTCTAC 58.185 63.158 18.58 2.93 46.65 2.59
3953 4238 1.076632 AGCCAGGAGGTCCTCTACG 60.077 63.158 18.58 7.22 46.65 3.51
3954 4239 1.380112 GCCAGGAGGTCCTCTACGT 60.380 63.158 18.58 0.00 46.65 3.57
3955 4240 0.106819 GCCAGGAGGTCCTCTACGTA 60.107 60.000 18.58 0.00 46.65 3.57
3956 4241 1.677942 CCAGGAGGTCCTCTACGTAC 58.322 60.000 18.58 0.69 46.65 3.67
3957 4242 1.677942 CAGGAGGTCCTCTACGTACC 58.322 60.000 18.58 0.44 46.65 3.34
3958 4243 0.179936 AGGAGGTCCTCTACGTACCG 59.820 60.000 18.58 0.00 44.77 4.02
3959 4244 0.817229 GGAGGTCCTCTACGTACCGG 60.817 65.000 18.58 0.00 38.37 5.28
3960 4245 0.179000 GAGGTCCTCTACGTACCGGA 59.821 60.000 9.46 4.40 38.37 5.14
3961 4246 0.620556 AGGTCCTCTACGTACCGGAA 59.379 55.000 9.46 0.00 38.37 4.30
3962 4247 1.213926 AGGTCCTCTACGTACCGGAAT 59.786 52.381 9.46 0.00 38.37 3.01
3963 4248 1.336125 GGTCCTCTACGTACCGGAATG 59.664 57.143 9.46 0.00 0.00 2.67
3964 4249 1.336125 GTCCTCTACGTACCGGAATGG 59.664 57.143 9.46 0.00 46.41 3.16
3965 4250 0.672342 CCTCTACGTACCGGAATGGG 59.328 60.000 9.46 0.00 44.64 4.00
3966 4251 1.683943 CTCTACGTACCGGAATGGGA 58.316 55.000 9.46 0.00 44.64 4.37
3967 4252 1.607628 CTCTACGTACCGGAATGGGAG 59.392 57.143 9.46 4.58 44.64 4.30
3968 4253 0.031721 CTACGTACCGGAATGGGAGC 59.968 60.000 9.46 0.00 44.64 4.70
3969 4254 1.394266 TACGTACCGGAATGGGAGCC 61.394 60.000 9.46 0.00 44.64 4.70
3970 4255 2.432300 CGTACCGGAATGGGAGCCT 61.432 63.158 9.46 0.00 44.64 4.58
3971 4256 1.446366 GTACCGGAATGGGAGCCTC 59.554 63.158 9.46 0.00 44.64 4.70
3972 4257 1.002403 TACCGGAATGGGAGCCTCA 59.998 57.895 9.46 0.00 44.64 3.86
3973 4258 1.048724 TACCGGAATGGGAGCCTCAG 61.049 60.000 9.46 0.00 44.64 3.35
3974 4259 2.507944 CGGAATGGGAGCCTCAGG 59.492 66.667 0.00 0.00 0.00 3.86
3975 4260 2.066393 CGGAATGGGAGCCTCAGGA 61.066 63.158 0.00 0.00 0.00 3.86
3976 4261 1.529309 GGAATGGGAGCCTCAGGAC 59.471 63.158 0.00 0.00 0.00 3.85
3977 4262 1.529309 GAATGGGAGCCTCAGGACC 59.471 63.158 0.00 0.00 0.00 4.46
3978 4263 2.317149 GAATGGGAGCCTCAGGACCG 62.317 65.000 0.00 0.00 0.00 4.79
3985 4270 3.382832 CCTCAGGACCGGCGAACT 61.383 66.667 9.30 0.00 0.00 3.01
3986 4271 2.182030 CTCAGGACCGGCGAACTC 59.818 66.667 9.30 0.00 0.00 3.01
3987 4272 3.358076 CTCAGGACCGGCGAACTCC 62.358 68.421 9.30 9.38 0.00 3.85
3995 4280 2.031465 GGCGAACTCCGAAACCCA 59.969 61.111 0.00 0.00 41.76 4.51
3996 4281 2.322830 GGCGAACTCCGAAACCCAC 61.323 63.158 0.00 0.00 41.76 4.61
3997 4282 2.322830 GCGAACTCCGAAACCCACC 61.323 63.158 0.00 0.00 41.76 4.61
3998 4283 2.025418 CGAACTCCGAAACCCACCG 61.025 63.158 0.00 0.00 41.76 4.94
3999 4284 1.070275 GAACTCCGAAACCCACCGT 59.930 57.895 0.00 0.00 0.00 4.83
4000 4285 1.226030 GAACTCCGAAACCCACCGTG 61.226 60.000 0.00 0.00 0.00 4.94
4001 4286 3.047877 CTCCGAAACCCACCGTGC 61.048 66.667 0.00 0.00 0.00 5.34
4002 4287 3.818121 CTCCGAAACCCACCGTGCA 62.818 63.158 0.00 0.00 0.00 4.57
4003 4288 3.353836 CCGAAACCCACCGTGCAG 61.354 66.667 0.00 0.00 0.00 4.41
4017 4302 4.722193 GCAGGTGCAGGTGTATGT 57.278 55.556 0.00 0.00 41.59 2.29
4018 4303 2.174334 GCAGGTGCAGGTGTATGTG 58.826 57.895 0.00 0.00 41.59 3.21
4019 4304 0.606401 GCAGGTGCAGGTGTATGTGT 60.606 55.000 0.00 0.00 41.59 3.72
4020 4305 1.338674 GCAGGTGCAGGTGTATGTGTA 60.339 52.381 0.00 0.00 41.59 2.90
4021 4306 2.680805 GCAGGTGCAGGTGTATGTGTAT 60.681 50.000 0.00 0.00 41.59 2.29
4022 4307 3.198068 CAGGTGCAGGTGTATGTGTATC 58.802 50.000 0.00 0.00 0.00 2.24
4023 4308 2.170607 AGGTGCAGGTGTATGTGTATCC 59.829 50.000 0.00 0.00 0.00 2.59
4024 4309 2.093181 GGTGCAGGTGTATGTGTATCCA 60.093 50.000 0.00 0.00 0.00 3.41
4025 4310 2.936498 GTGCAGGTGTATGTGTATCCAC 59.064 50.000 0.00 0.00 42.19 4.02
4026 4311 2.201732 GCAGGTGTATGTGTATCCACG 58.798 52.381 0.00 0.00 44.92 4.94
4027 4312 2.201732 CAGGTGTATGTGTATCCACGC 58.798 52.381 0.00 0.00 44.92 5.34
4028 4313 1.202371 AGGTGTATGTGTATCCACGCG 60.202 52.381 3.53 3.53 44.92 6.01
4029 4314 1.205657 GTGTATGTGTATCCACGCGG 58.794 55.000 12.47 0.00 44.92 6.46
4030 4315 0.528901 TGTATGTGTATCCACGCGGC 60.529 55.000 12.47 0.00 44.92 6.53
4031 4316 1.299544 TATGTGTATCCACGCGGCG 60.300 57.895 22.36 22.36 44.92 6.46
4047 4332 4.789075 CGCGTACCTCCGGTGGTG 62.789 72.222 33.34 20.81 41.05 4.17
4048 4333 3.376078 GCGTACCTCCGGTGGTGA 61.376 66.667 33.34 17.10 41.05 4.02
4049 4334 2.882876 CGTACCTCCGGTGGTGAG 59.117 66.667 33.34 23.40 41.05 3.51
4050 4335 1.975407 CGTACCTCCGGTGGTGAGT 60.975 63.158 33.34 12.94 41.05 3.41
4051 4336 1.590147 GTACCTCCGGTGGTGAGTG 59.410 63.158 33.34 6.09 41.05 3.51
4052 4337 0.896940 GTACCTCCGGTGGTGAGTGA 60.897 60.000 33.34 14.12 41.05 3.41
4053 4338 0.896940 TACCTCCGGTGGTGAGTGAC 60.897 60.000 33.34 0.00 41.05 3.67
4054 4339 2.258591 CTCCGGTGGTGAGTGACG 59.741 66.667 0.00 0.00 0.00 4.35
4055 4340 2.520020 TCCGGTGGTGAGTGACGT 60.520 61.111 0.00 0.00 0.00 4.34
4056 4341 2.355837 CCGGTGGTGAGTGACGTG 60.356 66.667 0.00 0.00 0.00 4.49
4057 4342 2.725641 CGGTGGTGAGTGACGTGA 59.274 61.111 0.00 0.00 0.00 4.35
4058 4343 1.371758 CGGTGGTGAGTGACGTGAG 60.372 63.158 0.00 0.00 0.00 3.51
4059 4344 1.006102 GGTGGTGAGTGACGTGAGG 60.006 63.158 0.00 0.00 0.00 3.86
4060 4345 1.664965 GTGGTGAGTGACGTGAGGC 60.665 63.158 0.00 0.00 42.12 4.70
4068 4353 4.036977 GACGTGAGGCAAAACGGA 57.963 55.556 0.00 0.00 43.96 4.69
4069 4354 2.540145 GACGTGAGGCAAAACGGAT 58.460 52.632 0.00 0.00 43.96 4.18
4070 4355 0.872388 GACGTGAGGCAAAACGGATT 59.128 50.000 0.00 0.00 43.96 3.01
4071 4356 1.265905 GACGTGAGGCAAAACGGATTT 59.734 47.619 0.00 0.00 43.96 2.17
4082 4367 4.481112 CGGATTTGCTGCCGTGGC 62.481 66.667 3.30 3.30 42.49 5.01
4083 4368 4.481112 GGATTTGCTGCCGTGGCG 62.481 66.667 6.37 2.49 45.51 5.69
4084 4369 3.430862 GATTTGCTGCCGTGGCGA 61.431 61.111 6.37 0.00 45.51 5.54
4085 4370 3.386867 GATTTGCTGCCGTGGCGAG 62.387 63.158 6.37 6.22 45.51 5.03
4093 4378 4.379243 CCGTGGCGAGCAAGGTCT 62.379 66.667 0.00 0.00 0.00 3.85
4094 4379 3.114616 CGTGGCGAGCAAGGTCTG 61.115 66.667 0.00 0.00 0.00 3.51
4095 4380 2.343758 GTGGCGAGCAAGGTCTGA 59.656 61.111 0.00 0.00 0.00 3.27
4096 4381 2.029844 GTGGCGAGCAAGGTCTGAC 61.030 63.158 0.00 0.00 0.00 3.51
4097 4382 2.343758 GGCGAGCAAGGTCTGACA 59.656 61.111 10.38 0.00 0.00 3.58
4098 4383 1.078848 GGCGAGCAAGGTCTGACAT 60.079 57.895 10.38 0.00 0.00 3.06
4099 4384 1.364626 GGCGAGCAAGGTCTGACATG 61.365 60.000 10.38 9.05 0.00 3.21
4100 4385 0.671781 GCGAGCAAGGTCTGACATGT 60.672 55.000 10.38 0.00 0.00 3.21
4101 4386 1.073964 CGAGCAAGGTCTGACATGTG 58.926 55.000 1.15 5.31 0.00 3.21
4102 4387 0.801251 GAGCAAGGTCTGACATGTGC 59.199 55.000 1.15 16.94 0.00 4.57
4103 4388 0.952497 AGCAAGGTCTGACATGTGCG 60.952 55.000 1.15 0.00 37.09 5.34
4104 4389 0.950555 GCAAGGTCTGACATGTGCGA 60.951 55.000 1.15 0.00 0.00 5.10
4105 4390 0.792640 CAAGGTCTGACATGTGCGAC 59.207 55.000 1.15 9.32 0.00 5.19
4106 4391 0.667487 AAGGTCTGACATGTGCGACG 60.667 55.000 1.15 0.00 0.00 5.12
4107 4392 1.080772 GGTCTGACATGTGCGACGA 60.081 57.895 1.15 0.00 0.00 4.20
4108 4393 0.458543 GGTCTGACATGTGCGACGAT 60.459 55.000 1.15 0.00 0.00 3.73
4109 4394 0.917259 GTCTGACATGTGCGACGATC 59.083 55.000 1.15 0.00 0.00 3.69
4110 4395 0.525761 TCTGACATGTGCGACGATCA 59.474 50.000 1.15 0.00 0.00 2.92
4111 4396 0.642291 CTGACATGTGCGACGATCAC 59.358 55.000 1.15 0.00 35.14 3.06
4112 4397 0.243636 TGACATGTGCGACGATCACT 59.756 50.000 1.15 0.00 35.58 3.41
4113 4398 0.642291 GACATGTGCGACGATCACTG 59.358 55.000 1.15 1.90 35.58 3.66
4114 4399 0.737367 ACATGTGCGACGATCACTGG 60.737 55.000 0.00 0.00 35.58 4.00
4115 4400 0.458370 CATGTGCGACGATCACTGGA 60.458 55.000 0.00 0.00 35.58 3.86
4116 4401 0.458543 ATGTGCGACGATCACTGGAC 60.459 55.000 0.00 0.00 35.58 4.02
4117 4402 2.152699 GTGCGACGATCACTGGACG 61.153 63.158 0.00 0.00 0.00 4.79
4118 4403 3.248171 GCGACGATCACTGGACGC 61.248 66.667 0.00 0.00 39.33 5.19
4119 4404 2.579787 CGACGATCACTGGACGCC 60.580 66.667 0.00 0.00 0.00 5.68
4120 4405 2.579787 GACGATCACTGGACGCCG 60.580 66.667 0.00 0.00 0.00 6.46
4121 4406 3.338126 GACGATCACTGGACGCCGT 62.338 63.158 0.00 0.00 32.21 5.68
4122 4407 2.579787 CGATCACTGGACGCCGTC 60.580 66.667 9.15 9.15 0.00 4.79
4123 4408 2.885861 GATCACTGGACGCCGTCT 59.114 61.111 17.76 0.00 32.47 4.18
4124 4409 1.226717 GATCACTGGACGCCGTCTC 60.227 63.158 17.76 7.93 32.47 3.36
4125 4410 2.615262 GATCACTGGACGCCGTCTCC 62.615 65.000 17.76 2.18 32.47 3.71
4126 4411 4.778415 CACTGGACGCCGTCTCCG 62.778 72.222 17.76 8.16 32.47 4.63
4133 4418 4.394078 CGCCGTCTCCGTCGTTCA 62.394 66.667 0.00 0.00 29.68 3.18
4134 4419 2.049802 GCCGTCTCCGTCGTTCAA 60.050 61.111 0.00 0.00 0.00 2.69
4135 4420 2.087009 GCCGTCTCCGTCGTTCAAG 61.087 63.158 0.00 0.00 0.00 3.02
4136 4421 1.285023 CCGTCTCCGTCGTTCAAGT 59.715 57.895 0.00 0.00 0.00 3.16
4137 4422 0.728466 CCGTCTCCGTCGTTCAAGTC 60.728 60.000 0.00 0.00 0.00 3.01
4138 4423 1.058590 CGTCTCCGTCGTTCAAGTCG 61.059 60.000 0.00 0.00 0.00 4.18
4139 4424 0.236711 GTCTCCGTCGTTCAAGTCGA 59.763 55.000 0.00 0.00 34.91 4.20
4145 4430 2.422303 TCGTTCAAGTCGACCAGGT 58.578 52.632 13.01 0.00 32.30 4.00
4146 4431 0.031585 TCGTTCAAGTCGACCAGGTG 59.968 55.000 13.01 5.88 32.30 4.00
4147 4432 0.944311 CGTTCAAGTCGACCAGGTGG 60.944 60.000 13.01 0.00 42.17 4.61
4148 4433 0.391597 GTTCAAGTCGACCAGGTGGA 59.608 55.000 13.01 0.00 38.94 4.02
4149 4434 0.391597 TTCAAGTCGACCAGGTGGAC 59.608 55.000 23.81 23.81 40.65 4.02
4154 4439 4.415332 CGACCAGGTGGACGTCCG 62.415 72.222 28.70 16.67 45.60 4.79
4155 4440 4.065281 GACCAGGTGGACGTCCGG 62.065 72.222 28.70 24.42 39.43 5.14
4158 4443 4.065281 CAGGTGGACGTCCGGGTC 62.065 72.222 28.70 17.91 39.43 4.46
4173 4458 4.736896 GTCGTCCGTGGTGGCCTC 62.737 72.222 3.32 0.00 37.80 4.70
4176 4461 4.394712 GTCCGTGGTGGCCTCCAG 62.395 72.222 26.78 18.86 38.23 3.86
4179 4464 3.402681 CGTGGTGGCCTCCAGGAT 61.403 66.667 33.04 0.00 43.46 3.24
4180 4465 2.273449 GTGGTGGCCTCCAGGATG 59.727 66.667 26.78 0.00 38.23 3.51
4192 4477 2.397751 CAGGATGGCTTAGTTGGCG 58.602 57.895 0.00 0.00 35.06 5.69
4193 4478 1.097547 CAGGATGGCTTAGTTGGCGG 61.098 60.000 0.00 0.00 35.06 6.13
4194 4479 1.077716 GGATGGCTTAGTTGGCGGT 60.078 57.895 0.00 0.00 35.06 5.68
4195 4480 1.376609 GGATGGCTTAGTTGGCGGTG 61.377 60.000 0.00 0.00 35.06 4.94
4196 4481 0.392461 GATGGCTTAGTTGGCGGTGA 60.392 55.000 0.00 0.00 35.06 4.02
4197 4482 0.037590 ATGGCTTAGTTGGCGGTGAA 59.962 50.000 0.00 0.00 35.06 3.18
4198 4483 0.605319 TGGCTTAGTTGGCGGTGAAG 60.605 55.000 0.00 0.00 35.06 3.02
4199 4484 0.605589 GGCTTAGTTGGCGGTGAAGT 60.606 55.000 0.00 0.00 0.00 3.01
4200 4485 0.517316 GCTTAGTTGGCGGTGAAGTG 59.483 55.000 0.00 0.00 0.00 3.16
4201 4486 0.517316 CTTAGTTGGCGGTGAAGTGC 59.483 55.000 0.00 0.00 0.00 4.40
4202 4487 1.225376 TTAGTTGGCGGTGAAGTGCG 61.225 55.000 0.00 0.00 0.00 5.34
4203 4488 4.683334 GTTGGCGGTGAAGTGCGC 62.683 66.667 0.00 0.00 0.00 6.09
4218 4503 3.827784 CGCGAGCTTGACGAACGG 61.828 66.667 4.70 0.00 0.00 4.44
4219 4504 4.135493 GCGAGCTTGACGAACGGC 62.135 66.667 4.70 0.00 0.00 5.68
4221 4506 4.135493 GAGCTTGACGAACGGCGC 62.135 66.667 6.90 0.00 46.04 6.53
4224 4509 3.777925 CTTGACGAACGGCGCCAG 61.778 66.667 28.98 21.29 46.04 4.85
4229 4514 4.025401 CGAACGGCGCCAGCTTTT 62.025 61.111 28.98 10.64 44.37 2.27
4230 4515 2.429069 GAACGGCGCCAGCTTTTG 60.429 61.111 28.98 10.77 44.37 2.44
4245 4530 3.310303 CTTTTGCAGCATCTAGTACGC 57.690 47.619 0.00 0.00 0.00 4.42
4246 4531 2.672961 TTTGCAGCATCTAGTACGCT 57.327 45.000 0.00 0.00 36.10 5.07
4247 4532 2.209838 TTGCAGCATCTAGTACGCTC 57.790 50.000 0.00 0.00 32.48 5.03
4248 4533 1.393603 TGCAGCATCTAGTACGCTCT 58.606 50.000 0.00 0.00 32.48 4.09
4249 4534 1.066152 TGCAGCATCTAGTACGCTCTG 59.934 52.381 0.00 0.00 32.48 3.35
4250 4535 1.066303 GCAGCATCTAGTACGCTCTGT 59.934 52.381 1.18 0.00 32.48 3.41
4251 4536 2.480416 GCAGCATCTAGTACGCTCTGTT 60.480 50.000 1.18 0.00 32.48 3.16
4252 4537 3.111838 CAGCATCTAGTACGCTCTGTTG 58.888 50.000 1.18 0.00 32.48 3.33
4253 4538 2.099921 AGCATCTAGTACGCTCTGTTGG 59.900 50.000 0.00 0.00 0.00 3.77
4254 4539 2.464865 CATCTAGTACGCTCTGTTGGC 58.535 52.381 0.00 0.00 0.00 4.52
4255 4540 0.815734 TCTAGTACGCTCTGTTGGCC 59.184 55.000 0.00 0.00 0.00 5.36
4256 4541 0.525668 CTAGTACGCTCTGTTGGCCG 60.526 60.000 0.00 0.00 0.00 6.13
4257 4542 1.940883 TAGTACGCTCTGTTGGCCGG 61.941 60.000 0.00 0.00 0.00 6.13
4258 4543 4.752879 TACGCTCTGTTGGCCGGC 62.753 66.667 21.18 21.18 0.00 6.13
4283 4568 3.866582 AGGGCTATCCTGCACCGC 61.867 66.667 0.00 0.00 46.07 5.68
4284 4569 4.175337 GGGCTATCCTGCACCGCA 62.175 66.667 0.00 0.00 36.92 5.69
4303 4588 3.818787 GCCCAGGCGATGCAACAG 61.819 66.667 0.00 0.00 0.00 3.16
4304 4589 3.136123 CCCAGGCGATGCAACAGG 61.136 66.667 0.00 0.00 0.00 4.00
4305 4590 2.046023 CCAGGCGATGCAACAGGA 60.046 61.111 0.00 0.00 0.00 3.86
4306 4591 2.401766 CCAGGCGATGCAACAGGAC 61.402 63.158 0.00 0.00 0.00 3.85
4307 4592 1.672030 CAGGCGATGCAACAGGACA 60.672 57.895 0.00 0.00 0.00 4.02
4308 4593 1.376424 AGGCGATGCAACAGGACAG 60.376 57.895 0.00 0.00 0.00 3.51
4309 4594 2.401766 GGCGATGCAACAGGACAGG 61.402 63.158 0.00 0.00 0.00 4.00
4310 4595 3.044059 GCGATGCAACAGGACAGGC 62.044 63.158 0.00 0.00 0.00 4.85
4311 4596 2.743752 CGATGCAACAGGACAGGCG 61.744 63.158 0.00 0.00 0.00 5.52
4312 4597 1.375908 GATGCAACAGGACAGGCGA 60.376 57.895 0.00 0.00 0.00 5.54
4313 4598 0.745845 GATGCAACAGGACAGGCGAT 60.746 55.000 0.00 0.00 0.00 4.58
4314 4599 0.745845 ATGCAACAGGACAGGCGATC 60.746 55.000 0.00 0.00 0.00 3.69
4315 4600 2.456119 GCAACAGGACAGGCGATCG 61.456 63.158 11.69 11.69 0.00 3.69
4316 4601 1.215382 CAACAGGACAGGCGATCGA 59.785 57.895 21.57 0.00 0.00 3.59
4317 4602 0.389817 CAACAGGACAGGCGATCGAA 60.390 55.000 21.57 0.00 0.00 3.71
4318 4603 0.537188 AACAGGACAGGCGATCGAAT 59.463 50.000 21.57 2.43 0.00 3.34
4319 4604 0.179100 ACAGGACAGGCGATCGAATG 60.179 55.000 21.57 18.09 0.00 2.67
4320 4605 0.103026 CAGGACAGGCGATCGAATGA 59.897 55.000 21.57 0.00 0.00 2.57
4321 4606 0.387202 AGGACAGGCGATCGAATGAG 59.613 55.000 21.57 5.63 0.00 2.90
4322 4607 1.218230 GGACAGGCGATCGAATGAGC 61.218 60.000 21.57 12.75 0.00 4.26
4323 4608 0.249238 GACAGGCGATCGAATGAGCT 60.249 55.000 21.57 0.23 0.00 4.09
4324 4609 0.249238 ACAGGCGATCGAATGAGCTC 60.249 55.000 21.57 6.82 0.00 4.09
4325 4610 0.943359 CAGGCGATCGAATGAGCTCC 60.943 60.000 21.57 7.71 35.61 4.70
4326 4611 1.666234 GGCGATCGAATGAGCTCCC 60.666 63.158 21.57 2.77 29.04 4.30
4327 4612 1.365633 GCGATCGAATGAGCTCCCT 59.634 57.895 21.57 0.00 0.00 4.20
4328 4613 0.943359 GCGATCGAATGAGCTCCCTG 60.943 60.000 21.57 0.00 0.00 4.45
4329 4614 0.387202 CGATCGAATGAGCTCCCTGT 59.613 55.000 10.26 0.00 0.00 4.00
4330 4615 1.202463 CGATCGAATGAGCTCCCTGTT 60.202 52.381 10.26 0.67 0.00 3.16
4331 4616 2.208431 GATCGAATGAGCTCCCTGTTG 58.792 52.381 12.15 0.00 0.00 3.33
4332 4617 0.391661 TCGAATGAGCTCCCTGTTGC 60.392 55.000 12.15 0.00 0.00 4.17
4333 4618 0.674581 CGAATGAGCTCCCTGTTGCA 60.675 55.000 12.15 0.00 0.00 4.08
4334 4619 0.807496 GAATGAGCTCCCTGTTGCAC 59.193 55.000 12.15 0.00 0.00 4.57
4335 4620 0.610232 AATGAGCTCCCTGTTGCACC 60.610 55.000 12.15 0.00 0.00 5.01
4336 4621 2.743928 GAGCTCCCTGTTGCACCG 60.744 66.667 0.87 0.00 0.00 4.94
4337 4622 3.537206 GAGCTCCCTGTTGCACCGT 62.537 63.158 0.87 0.00 0.00 4.83
4338 4623 2.167398 GAGCTCCCTGTTGCACCGTA 62.167 60.000 0.87 0.00 0.00 4.02
4339 4624 1.078426 GCTCCCTGTTGCACCGTAT 60.078 57.895 0.00 0.00 0.00 3.06
4340 4625 1.090052 GCTCCCTGTTGCACCGTATC 61.090 60.000 0.00 0.00 0.00 2.24
4341 4626 0.537188 CTCCCTGTTGCACCGTATCT 59.463 55.000 0.00 0.00 0.00 1.98
4342 4627 0.981183 TCCCTGTTGCACCGTATCTT 59.019 50.000 0.00 0.00 0.00 2.40
4343 4628 1.066430 TCCCTGTTGCACCGTATCTTC 60.066 52.381 0.00 0.00 0.00 2.87
4344 4629 1.369625 CCTGTTGCACCGTATCTTCC 58.630 55.000 0.00 0.00 0.00 3.46
4345 4630 1.338674 CCTGTTGCACCGTATCTTCCA 60.339 52.381 0.00 0.00 0.00 3.53
4346 4631 2.002586 CTGTTGCACCGTATCTTCCAG 58.997 52.381 0.00 0.00 0.00 3.86
4347 4632 1.621317 TGTTGCACCGTATCTTCCAGA 59.379 47.619 0.00 0.00 0.00 3.86
4348 4633 2.037902 TGTTGCACCGTATCTTCCAGAA 59.962 45.455 0.00 0.00 0.00 3.02
4349 4634 2.672961 TGCACCGTATCTTCCAGAAG 57.327 50.000 0.73 0.73 39.71 2.85
4350 4635 1.207089 TGCACCGTATCTTCCAGAAGG 59.793 52.381 7.53 0.00 38.88 3.46
4351 4636 1.207329 GCACCGTATCTTCCAGAAGGT 59.793 52.381 7.53 2.96 38.88 3.50
4352 4637 2.738964 GCACCGTATCTTCCAGAAGGTC 60.739 54.545 7.53 0.00 38.88 3.85
4353 4638 2.761208 CACCGTATCTTCCAGAAGGTCT 59.239 50.000 7.53 0.00 38.88 3.85
4354 4639 2.761208 ACCGTATCTTCCAGAAGGTCTG 59.239 50.000 7.53 0.00 43.91 3.51
4355 4640 2.482142 CCGTATCTTCCAGAAGGTCTGC 60.482 54.545 7.53 0.00 42.98 4.26
4356 4641 2.428890 CGTATCTTCCAGAAGGTCTGCT 59.571 50.000 7.53 0.00 42.98 4.24
4357 4642 3.632604 CGTATCTTCCAGAAGGTCTGCTA 59.367 47.826 7.53 0.00 42.98 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.241367 CGACCCAGTATTTATTTTTGCTTTACT 58.759 33.333 0.00 0.00 0.00 2.24
12 13 8.024865 ACGACCCAGTATTTATTTTTGCTTTAC 58.975 33.333 0.00 0.00 0.00 2.01
13 14 8.113173 ACGACCCAGTATTTATTTTTGCTTTA 57.887 30.769 0.00 0.00 0.00 1.85
14 15 6.988522 ACGACCCAGTATTTATTTTTGCTTT 58.011 32.000 0.00 0.00 0.00 3.51
15 16 6.584185 ACGACCCAGTATTTATTTTTGCTT 57.416 33.333 0.00 0.00 0.00 3.91
16 17 5.163794 CGACGACCCAGTATTTATTTTTGCT 60.164 40.000 0.00 0.00 0.00 3.91
17 18 5.025826 CGACGACCCAGTATTTATTTTTGC 58.974 41.667 0.00 0.00 0.00 3.68
18 19 6.173191 ACGACGACCCAGTATTTATTTTTG 57.827 37.500 0.00 0.00 0.00 2.44
19 20 7.099120 AGTACGACGACCCAGTATTTATTTTT 58.901 34.615 0.00 0.00 0.00 1.94
20 21 6.633856 AGTACGACGACCCAGTATTTATTTT 58.366 36.000 0.00 0.00 0.00 1.82
21 22 6.212888 AGTACGACGACCCAGTATTTATTT 57.787 37.500 0.00 0.00 0.00 1.40
22 23 5.841957 AGTACGACGACCCAGTATTTATT 57.158 39.130 0.00 0.00 0.00 1.40
23 24 5.841957 AAGTACGACGACCCAGTATTTAT 57.158 39.130 0.00 0.00 0.00 1.40
24 25 6.942532 ATAAGTACGACGACCCAGTATTTA 57.057 37.500 0.00 0.00 30.84 1.40
25 26 5.841957 ATAAGTACGACGACCCAGTATTT 57.158 39.130 0.00 0.00 0.00 1.40
26 27 6.543831 AGTTATAAGTACGACGACCCAGTATT 59.456 38.462 0.00 0.00 0.00 1.89
27 28 6.058183 AGTTATAAGTACGACGACCCAGTAT 58.942 40.000 0.00 0.00 0.00 2.12
28 29 5.428253 AGTTATAAGTACGACGACCCAGTA 58.572 41.667 0.00 0.00 0.00 2.74
29 30 4.265073 AGTTATAAGTACGACGACCCAGT 58.735 43.478 0.00 0.00 0.00 4.00
30 31 4.889832 AGTTATAAGTACGACGACCCAG 57.110 45.455 0.00 0.00 0.00 4.45
31 32 5.880332 AGTAAGTTATAAGTACGACGACCCA 59.120 40.000 0.00 0.00 0.00 4.51
32 33 6.364945 AGTAAGTTATAAGTACGACGACCC 57.635 41.667 0.00 0.00 0.00 4.46
33 34 6.195428 GCAAGTAAGTTATAAGTACGACGACC 59.805 42.308 0.00 0.00 0.00 4.79
34 35 6.963805 AGCAAGTAAGTTATAAGTACGACGAC 59.036 38.462 0.00 0.00 0.00 4.34
35 36 6.963242 CAGCAAGTAAGTTATAAGTACGACGA 59.037 38.462 0.00 0.00 0.00 4.20
36 37 6.195983 CCAGCAAGTAAGTTATAAGTACGACG 59.804 42.308 0.00 0.00 0.00 5.12
37 38 7.031975 ACCAGCAAGTAAGTTATAAGTACGAC 58.968 38.462 0.00 0.00 0.00 4.34
38 39 7.161773 ACCAGCAAGTAAGTTATAAGTACGA 57.838 36.000 0.00 0.00 0.00 3.43
39 40 7.201496 CCAACCAGCAAGTAAGTTATAAGTACG 60.201 40.741 0.00 0.00 0.00 3.67
40 41 7.605309 ACCAACCAGCAAGTAAGTTATAAGTAC 59.395 37.037 0.00 0.00 0.00 2.73
41 42 7.604927 CACCAACCAGCAAGTAAGTTATAAGTA 59.395 37.037 0.00 0.00 0.00 2.24
42 43 6.430000 CACCAACCAGCAAGTAAGTTATAAGT 59.570 38.462 0.00 0.00 0.00 2.24
43 44 6.622896 GCACCAACCAGCAAGTAAGTTATAAG 60.623 42.308 0.00 0.00 0.00 1.73
44 45 5.182380 GCACCAACCAGCAAGTAAGTTATAA 59.818 40.000 0.00 0.00 0.00 0.98
45 46 4.698304 GCACCAACCAGCAAGTAAGTTATA 59.302 41.667 0.00 0.00 0.00 0.98
46 47 3.506067 GCACCAACCAGCAAGTAAGTTAT 59.494 43.478 0.00 0.00 0.00 1.89
47 48 2.882137 GCACCAACCAGCAAGTAAGTTA 59.118 45.455 0.00 0.00 0.00 2.24
48 49 1.681264 GCACCAACCAGCAAGTAAGTT 59.319 47.619 0.00 0.00 0.00 2.66
49 50 1.318576 GCACCAACCAGCAAGTAAGT 58.681 50.000 0.00 0.00 0.00 2.24
50 51 1.267806 CTGCACCAACCAGCAAGTAAG 59.732 52.381 0.00 0.00 40.73 2.34
51 52 1.317613 CTGCACCAACCAGCAAGTAA 58.682 50.000 0.00 0.00 40.73 2.24
52 53 0.537143 CCTGCACCAACCAGCAAGTA 60.537 55.000 0.00 0.00 40.73 2.24
53 54 1.829533 CCTGCACCAACCAGCAAGT 60.830 57.895 0.00 0.00 40.73 3.16
54 55 0.537143 TACCTGCACCAACCAGCAAG 60.537 55.000 0.00 0.00 40.73 4.01
55 56 0.537143 CTACCTGCACCAACCAGCAA 60.537 55.000 0.00 0.00 40.73 3.91
56 57 1.073025 CTACCTGCACCAACCAGCA 59.927 57.895 0.00 0.00 39.25 4.41
57 58 0.035056 ATCTACCTGCACCAACCAGC 60.035 55.000 0.00 0.00 0.00 4.85
58 59 3.495100 GGATATCTACCTGCACCAACCAG 60.495 52.174 2.05 0.00 0.00 4.00
59 60 2.438021 GGATATCTACCTGCACCAACCA 59.562 50.000 2.05 0.00 0.00 3.67
60 61 2.438021 TGGATATCTACCTGCACCAACC 59.562 50.000 2.05 0.00 0.00 3.77
61 62 3.838244 TGGATATCTACCTGCACCAAC 57.162 47.619 2.05 0.00 0.00 3.77
62 63 3.006859 CGATGGATATCTACCTGCACCAA 59.993 47.826 2.05 0.00 0.00 3.67
63 64 2.562738 CGATGGATATCTACCTGCACCA 59.437 50.000 2.05 0.00 0.00 4.17
64 65 2.563179 ACGATGGATATCTACCTGCACC 59.437 50.000 2.05 0.00 0.00 5.01
65 66 3.944055 ACGATGGATATCTACCTGCAC 57.056 47.619 2.05 0.00 0.00 4.57
66 67 4.955811 AAACGATGGATATCTACCTGCA 57.044 40.909 2.05 0.00 0.00 4.41
67 68 5.297547 TCAAAACGATGGATATCTACCTGC 58.702 41.667 2.05 0.00 0.00 4.85
68 69 6.761242 TGTTCAAAACGATGGATATCTACCTG 59.239 38.462 2.05 0.00 0.00 4.00
69 70 6.884832 TGTTCAAAACGATGGATATCTACCT 58.115 36.000 2.05 0.00 0.00 3.08
70 71 7.576236 CATGTTCAAAACGATGGATATCTACC 58.424 38.462 2.05 0.00 0.00 3.18
71 72 7.072030 GCATGTTCAAAACGATGGATATCTAC 58.928 38.462 2.05 0.00 0.00 2.59
72 73 6.765512 TGCATGTTCAAAACGATGGATATCTA 59.234 34.615 2.05 0.00 0.00 1.98
73 74 5.589855 TGCATGTTCAAAACGATGGATATCT 59.410 36.000 2.05 0.00 0.00 1.98
74 75 5.820131 TGCATGTTCAAAACGATGGATATC 58.180 37.500 0.00 0.00 0.00 1.63
75 76 5.833406 TGCATGTTCAAAACGATGGATAT 57.167 34.783 0.00 0.00 0.00 1.63
76 77 5.356470 TCATGCATGTTCAAAACGATGGATA 59.644 36.000 25.43 0.00 33.16 2.59
77 78 4.158209 TCATGCATGTTCAAAACGATGGAT 59.842 37.500 25.43 0.00 34.22 3.41
78 79 3.505293 TCATGCATGTTCAAAACGATGGA 59.495 39.130 25.43 0.00 0.00 3.41
79 80 3.835779 TCATGCATGTTCAAAACGATGG 58.164 40.909 25.43 0.00 0.00 3.51
80 81 5.096849 TGATCATGCATGTTCAAAACGATG 58.903 37.500 29.53 3.60 34.56 3.84
81 82 5.313520 TGATCATGCATGTTCAAAACGAT 57.686 34.783 29.53 13.30 34.56 3.73
82 83 4.762956 TGATCATGCATGTTCAAAACGA 57.237 36.364 29.53 12.00 34.56 3.85
83 84 4.680567 TGTTGATCATGCATGTTCAAAACG 59.319 37.500 36.88 10.81 43.83 3.60
84 85 5.107375 GGTGTTGATCATGCATGTTCAAAAC 60.107 40.000 38.11 38.11 45.38 2.43
85 86 4.989797 GGTGTTGATCATGCATGTTCAAAA 59.010 37.500 36.88 32.62 43.83 2.44
86 87 4.558178 GGTGTTGATCATGCATGTTCAAA 58.442 39.130 36.88 27.73 43.83 2.69
87 88 3.366171 CGGTGTTGATCATGCATGTTCAA 60.366 43.478 33.96 33.96 41.56 2.69
88 89 2.162008 CGGTGTTGATCATGCATGTTCA 59.838 45.455 28.49 28.49 35.40 3.18
89 90 2.419673 TCGGTGTTGATCATGCATGTTC 59.580 45.455 25.43 25.03 0.00 3.18
90 91 2.421073 CTCGGTGTTGATCATGCATGTT 59.579 45.455 25.43 18.03 0.00 2.71
91 92 2.011947 CTCGGTGTTGATCATGCATGT 58.988 47.619 25.43 13.42 0.00 3.21
92 93 2.282407 TCTCGGTGTTGATCATGCATG 58.718 47.619 21.07 21.07 0.00 4.06
93 94 2.696989 TCTCGGTGTTGATCATGCAT 57.303 45.000 0.00 0.00 0.00 3.96
94 95 2.093553 TGATCTCGGTGTTGATCATGCA 60.094 45.455 0.00 0.00 42.58 3.96
95 96 2.543012 CTGATCTCGGTGTTGATCATGC 59.457 50.000 0.00 0.00 45.16 4.06
96 97 2.543012 GCTGATCTCGGTGTTGATCATG 59.457 50.000 0.00 0.00 45.16 3.07
97 98 2.800985 CGCTGATCTCGGTGTTGATCAT 60.801 50.000 0.00 0.00 45.16 2.45
98 99 1.469767 CGCTGATCTCGGTGTTGATCA 60.470 52.381 0.00 0.00 44.43 2.92
99 100 1.202302 TCGCTGATCTCGGTGTTGATC 60.202 52.381 7.81 0.00 39.43 2.92
100 101 0.817654 TCGCTGATCTCGGTGTTGAT 59.182 50.000 7.81 0.00 34.51 2.57
101 102 0.171231 CTCGCTGATCTCGGTGTTGA 59.829 55.000 7.81 0.00 34.51 3.18
102 103 0.171231 TCTCGCTGATCTCGGTGTTG 59.829 55.000 7.81 0.00 34.51 3.33
103 104 1.107114 ATCTCGCTGATCTCGGTGTT 58.893 50.000 7.81 0.00 34.51 3.32
104 105 1.107114 AATCTCGCTGATCTCGGTGT 58.893 50.000 7.81 0.00 33.57 4.16
105 106 2.215907 AAATCTCGCTGATCTCGGTG 57.784 50.000 7.81 0.00 33.57 4.94
106 107 2.688446 TGTAAATCTCGCTGATCTCGGT 59.312 45.455 7.81 0.00 33.57 4.69
107 108 3.046390 GTGTAAATCTCGCTGATCTCGG 58.954 50.000 7.81 0.99 33.57 4.63
108 109 3.046390 GGTGTAAATCTCGCTGATCTCG 58.954 50.000 0.00 0.00 33.57 4.04
109 110 4.046938 TGGTGTAAATCTCGCTGATCTC 57.953 45.455 0.00 0.00 33.57 2.75
110 111 3.181471 CCTGGTGTAAATCTCGCTGATCT 60.181 47.826 0.00 0.00 33.57 2.75
111 112 3.126831 CCTGGTGTAAATCTCGCTGATC 58.873 50.000 0.00 0.00 33.57 2.92
112 113 2.766263 TCCTGGTGTAAATCTCGCTGAT 59.234 45.455 0.00 0.00 36.89 2.90
113 114 2.094182 GTCCTGGTGTAAATCTCGCTGA 60.094 50.000 0.00 0.00 0.00 4.26
114 115 2.093973 AGTCCTGGTGTAAATCTCGCTG 60.094 50.000 0.00 0.00 0.00 5.18
115 116 2.180276 AGTCCTGGTGTAAATCTCGCT 58.820 47.619 0.00 0.00 0.00 4.93
116 117 2.674796 AGTCCTGGTGTAAATCTCGC 57.325 50.000 0.00 0.00 0.00 5.03
117 118 6.255887 GTGATAAAGTCCTGGTGTAAATCTCG 59.744 42.308 0.00 0.00 0.00 4.04
118 119 6.255887 CGTGATAAAGTCCTGGTGTAAATCTC 59.744 42.308 0.00 0.00 0.00 2.75
119 120 6.106673 CGTGATAAAGTCCTGGTGTAAATCT 58.893 40.000 0.00 0.00 0.00 2.40
120 121 5.873164 ACGTGATAAAGTCCTGGTGTAAATC 59.127 40.000 0.00 0.00 0.00 2.17
121 122 5.642063 CACGTGATAAAGTCCTGGTGTAAAT 59.358 40.000 10.90 0.00 0.00 1.40
122 123 4.992319 CACGTGATAAAGTCCTGGTGTAAA 59.008 41.667 10.90 0.00 0.00 2.01
123 124 4.561938 CCACGTGATAAAGTCCTGGTGTAA 60.562 45.833 19.30 0.00 0.00 2.41
124 125 3.056393 CCACGTGATAAAGTCCTGGTGTA 60.056 47.826 19.30 0.00 0.00 2.90
125 126 2.289444 CCACGTGATAAAGTCCTGGTGT 60.289 50.000 19.30 0.00 0.00 4.16
126 127 2.346803 CCACGTGATAAAGTCCTGGTG 58.653 52.381 19.30 0.00 0.00 4.17
127 128 1.338769 GCCACGTGATAAAGTCCTGGT 60.339 52.381 19.30 0.00 0.00 4.00
128 129 1.369625 GCCACGTGATAAAGTCCTGG 58.630 55.000 19.30 0.00 0.00 4.45
129 130 0.999406 CGCCACGTGATAAAGTCCTG 59.001 55.000 19.30 0.00 0.00 3.86
130 131 0.606604 ACGCCACGTGATAAAGTCCT 59.393 50.000 19.30 0.00 39.18 3.85
131 132 2.282701 TACGCCACGTGATAAAGTCC 57.717 50.000 19.30 0.00 41.39 3.85
132 133 3.244579 GGAATACGCCACGTGATAAAGTC 59.755 47.826 19.30 8.34 41.39 3.01
133 134 3.192466 GGAATACGCCACGTGATAAAGT 58.808 45.455 19.30 11.31 41.39 2.66
134 135 2.542595 GGGAATACGCCACGTGATAAAG 59.457 50.000 19.30 0.00 41.39 1.85
135 136 2.168936 AGGGAATACGCCACGTGATAAA 59.831 45.455 19.30 0.00 41.39 1.40
136 137 1.758280 AGGGAATACGCCACGTGATAA 59.242 47.619 19.30 0.00 41.39 1.75
137 138 1.338973 GAGGGAATACGCCACGTGATA 59.661 52.381 19.30 6.87 41.39 2.15
138 139 0.104304 GAGGGAATACGCCACGTGAT 59.896 55.000 19.30 4.54 41.39 3.06
139 140 1.514087 GAGGGAATACGCCACGTGA 59.486 57.895 19.30 0.00 41.39 4.35
140 141 1.520787 GGAGGGAATACGCCACGTG 60.521 63.158 9.08 9.08 41.39 4.49
141 142 2.897972 GGAGGGAATACGCCACGT 59.102 61.111 0.00 0.00 44.35 4.49
142 143 2.279252 CGGAGGGAATACGCCACG 60.279 66.667 0.00 0.00 0.00 4.94
143 144 1.067582 CTCGGAGGGAATACGCCAC 59.932 63.158 0.00 0.00 34.14 5.01
144 145 0.469331 ATCTCGGAGGGAATACGCCA 60.469 55.000 4.96 0.00 34.14 5.69
145 146 0.038159 CATCTCGGAGGGAATACGCC 60.038 60.000 4.96 0.00 34.14 5.68
146 147 0.959553 TCATCTCGGAGGGAATACGC 59.040 55.000 4.96 0.00 34.14 4.42
147 148 2.226912 GTCTCATCTCGGAGGGAATACG 59.773 54.545 4.96 0.00 35.58 3.06
148 149 2.559231 GGTCTCATCTCGGAGGGAATAC 59.441 54.545 4.96 5.10 35.58 1.89
149 150 2.177016 TGGTCTCATCTCGGAGGGAATA 59.823 50.000 4.96 0.00 35.58 1.75
150 151 1.062886 TGGTCTCATCTCGGAGGGAAT 60.063 52.381 4.96 0.00 35.58 3.01
151 152 0.335019 TGGTCTCATCTCGGAGGGAA 59.665 55.000 4.96 0.00 35.58 3.97
152 153 0.558220 ATGGTCTCATCTCGGAGGGA 59.442 55.000 4.96 2.88 35.58 4.20
153 154 0.678395 CATGGTCTCATCTCGGAGGG 59.322 60.000 4.96 0.00 35.58 4.30
154 155 0.678395 CCATGGTCTCATCTCGGAGG 59.322 60.000 2.57 0.00 35.58 4.30
155 156 1.339610 GTCCATGGTCTCATCTCGGAG 59.660 57.143 12.58 0.00 36.21 4.63
156 157 1.341976 TGTCCATGGTCTCATCTCGGA 60.342 52.381 12.58 0.00 0.00 4.55
157 158 1.114627 TGTCCATGGTCTCATCTCGG 58.885 55.000 12.58 0.00 0.00 4.63
158 159 3.069300 AGAATGTCCATGGTCTCATCTCG 59.931 47.826 12.58 0.00 0.00 4.04
159 160 4.686191 AGAATGTCCATGGTCTCATCTC 57.314 45.455 12.58 13.40 0.00 2.75
160 161 5.435291 GAAAGAATGTCCATGGTCTCATCT 58.565 41.667 12.58 8.52 0.00 2.90
161 162 4.578105 GGAAAGAATGTCCATGGTCTCATC 59.422 45.833 12.58 8.99 44.17 2.92
162 163 4.530875 GGAAAGAATGTCCATGGTCTCAT 58.469 43.478 12.58 12.06 44.17 2.90
163 164 3.955471 GGAAAGAATGTCCATGGTCTCA 58.045 45.455 12.58 10.26 44.17 3.27
172 173 6.937465 GGTCTTGATATAGGGAAAGAATGTCC 59.063 42.308 0.00 0.00 43.95 4.02
173 174 7.509546 TGGTCTTGATATAGGGAAAGAATGTC 58.490 38.462 0.00 0.00 30.85 3.06
174 175 7.451731 TGGTCTTGATATAGGGAAAGAATGT 57.548 36.000 0.00 0.00 30.85 2.71
175 176 7.094463 GCATGGTCTTGATATAGGGAAAGAATG 60.094 40.741 0.00 0.00 30.85 2.67
176 177 6.944862 GCATGGTCTTGATATAGGGAAAGAAT 59.055 38.462 0.00 0.00 30.85 2.40
177 178 6.126507 TGCATGGTCTTGATATAGGGAAAGAA 60.127 38.462 0.00 0.00 30.85 2.52
178 179 5.369404 TGCATGGTCTTGATATAGGGAAAGA 59.631 40.000 0.00 0.00 0.00 2.52
179 180 5.624159 TGCATGGTCTTGATATAGGGAAAG 58.376 41.667 0.00 0.00 0.00 2.62
180 181 5.456619 CCTGCATGGTCTTGATATAGGGAAA 60.457 44.000 0.00 0.00 0.00 3.13
181 182 4.042062 CCTGCATGGTCTTGATATAGGGAA 59.958 45.833 0.00 0.00 0.00 3.97
182 183 3.584406 CCTGCATGGTCTTGATATAGGGA 59.416 47.826 0.00 0.00 0.00 4.20
183 184 3.307975 CCCTGCATGGTCTTGATATAGGG 60.308 52.174 0.00 0.00 36.69 3.53
184 185 3.871463 GCCCTGCATGGTCTTGATATAGG 60.871 52.174 9.95 0.00 0.00 2.57
185 186 3.341823 GCCCTGCATGGTCTTGATATAG 58.658 50.000 9.95 0.00 0.00 1.31
186 187 2.040278 GGCCCTGCATGGTCTTGATATA 59.960 50.000 9.95 0.00 0.00 0.86
187 188 1.202976 GGCCCTGCATGGTCTTGATAT 60.203 52.381 9.95 0.00 0.00 1.63
188 189 0.183492 GGCCCTGCATGGTCTTGATA 59.817 55.000 9.95 0.00 0.00 2.15
189 190 1.076485 GGCCCTGCATGGTCTTGAT 60.076 57.895 9.95 0.00 0.00 2.57
190 191 2.356278 GGCCCTGCATGGTCTTGA 59.644 61.111 9.95 0.00 0.00 3.02
191 192 3.136123 CGGCCCTGCATGGTCTTG 61.136 66.667 11.05 0.00 0.00 3.02
192 193 4.431131 CCGGCCCTGCATGGTCTT 62.431 66.667 11.05 0.00 0.00 3.01
375 418 1.603739 GTGTTTCTGGGGGACTGGC 60.604 63.158 0.00 0.00 0.00 4.85
691 760 2.579201 CGCCGGACAGTTGGATCT 59.421 61.111 5.05 0.00 0.00 2.75
1166 1390 7.795482 TTTTCCTCGACTAAGTTTTCATCAA 57.205 32.000 0.00 0.00 0.00 2.57
2357 2587 7.123247 AGGTCATAGCTTTGCTACATGATTTTT 59.877 33.333 0.00 0.00 44.24 1.94
2523 2758 2.965831 AGGAGCTTGATACCGAATAGCA 59.034 45.455 0.00 0.00 34.37 3.49
3844 4129 2.203126 CATTCCAGAGGCCCTCGC 60.203 66.667 4.80 0.00 35.36 5.03
3879 4164 2.029623 CCATGGAGAAGGCCTGAATTG 58.970 52.381 5.69 0.00 0.00 2.32
3880 4165 1.687368 GCCATGGAGAAGGCCTGAATT 60.687 52.381 18.40 0.00 45.18 2.17
3881 4166 0.106318 GCCATGGAGAAGGCCTGAAT 60.106 55.000 18.40 0.00 45.18 2.57
3882 4167 1.304282 GCCATGGAGAAGGCCTGAA 59.696 57.895 18.40 0.00 45.18 3.02
3883 4168 3.001514 GCCATGGAGAAGGCCTGA 58.998 61.111 18.40 0.00 45.18 3.86
3888 4173 1.153005 GAGGCAGCCATGGAGAAGG 60.153 63.158 18.40 0.00 0.00 3.46
3889 4174 0.464013 CAGAGGCAGCCATGGAGAAG 60.464 60.000 18.40 2.08 0.00 2.85
3890 4175 1.605992 CAGAGGCAGCCATGGAGAA 59.394 57.895 18.40 0.00 0.00 2.87
3891 4176 2.372890 CCAGAGGCAGCCATGGAGA 61.373 63.158 25.22 0.00 35.48 3.71
3892 4177 1.706995 ATCCAGAGGCAGCCATGGAG 61.707 60.000 31.45 8.23 42.26 3.86
3893 4178 1.695239 ATCCAGAGGCAGCCATGGA 60.695 57.895 30.80 30.80 42.84 3.41
3894 4179 1.228184 GATCCAGAGGCAGCCATGG 60.228 63.158 24.00 24.00 35.00 3.66
3895 4180 1.228184 GGATCCAGAGGCAGCCATG 60.228 63.158 15.80 12.01 0.00 3.66
3896 4181 1.385631 AGGATCCAGAGGCAGCCAT 60.386 57.895 15.80 0.00 0.00 4.40
3897 4182 2.041762 AGGATCCAGAGGCAGCCA 59.958 61.111 15.80 0.00 0.00 4.75
3898 4183 2.828145 GAGGATCCAGAGGCAGCC 59.172 66.667 15.82 1.84 0.00 4.85
3899 4184 2.362329 GACGAGGATCCAGAGGCAGC 62.362 65.000 15.82 0.00 0.00 5.25
3900 4185 1.739049 GACGAGGATCCAGAGGCAG 59.261 63.158 15.82 0.00 0.00 4.85
3901 4186 1.758514 GGACGAGGATCCAGAGGCA 60.759 63.158 15.82 0.00 38.77 4.75
3902 4187 1.456705 AGGACGAGGATCCAGAGGC 60.457 63.158 15.82 6.47 41.73 4.70
3903 4188 0.825840 GGAGGACGAGGATCCAGAGG 60.826 65.000 15.82 2.06 41.73 3.69
3904 4189 2.727103 GGAGGACGAGGATCCAGAG 58.273 63.158 15.82 7.06 41.73 3.35
3931 4216 4.787280 AGGACCTCCTGGCTCCGG 62.787 72.222 0.00 0.00 46.55 5.14
3953 4238 1.335132 TGAGGCTCCCATTCCGGTAC 61.335 60.000 12.86 0.00 0.00 3.34
3954 4239 1.002403 TGAGGCTCCCATTCCGGTA 59.998 57.895 12.86 0.00 0.00 4.02
3955 4240 2.285368 TGAGGCTCCCATTCCGGT 60.285 61.111 12.86 0.00 0.00 5.28
3956 4241 2.507944 CTGAGGCTCCCATTCCGG 59.492 66.667 12.86 0.00 0.00 5.14
3957 4242 2.066393 TCCTGAGGCTCCCATTCCG 61.066 63.158 12.86 0.00 0.00 4.30
3958 4243 1.529309 GTCCTGAGGCTCCCATTCC 59.471 63.158 12.86 0.00 0.00 3.01
3959 4244 1.529309 GGTCCTGAGGCTCCCATTC 59.471 63.158 12.86 0.00 0.00 2.67
3960 4245 2.370445 CGGTCCTGAGGCTCCCATT 61.370 63.158 12.86 0.00 0.00 3.16
3961 4246 2.765807 CGGTCCTGAGGCTCCCAT 60.766 66.667 12.86 0.00 0.00 4.00
3968 4253 3.358076 GAGTTCGCCGGTCCTGAGG 62.358 68.421 1.90 0.00 0.00 3.86
3969 4254 2.182030 GAGTTCGCCGGTCCTGAG 59.818 66.667 1.90 0.00 0.00 3.35
3970 4255 3.379445 GGAGTTCGCCGGTCCTGA 61.379 66.667 1.90 0.00 0.00 3.86
3978 4263 2.031465 TGGGTTTCGGAGTTCGCC 59.969 61.111 0.00 0.00 39.05 5.54
3979 4264 2.322830 GGTGGGTTTCGGAGTTCGC 61.323 63.158 0.00 0.00 39.05 4.70
3980 4265 2.025418 CGGTGGGTTTCGGAGTTCG 61.025 63.158 0.00 0.00 40.90 3.95
3981 4266 1.070275 ACGGTGGGTTTCGGAGTTC 59.930 57.895 0.00 0.00 0.00 3.01
3982 4267 1.227734 CACGGTGGGTTTCGGAGTT 60.228 57.895 0.00 0.00 0.00 3.01
3983 4268 2.424302 CACGGTGGGTTTCGGAGT 59.576 61.111 0.00 0.00 0.00 3.85
3984 4269 3.047877 GCACGGTGGGTTTCGGAG 61.048 66.667 10.60 0.00 0.00 4.63
3985 4270 3.818121 CTGCACGGTGGGTTTCGGA 62.818 63.158 10.60 0.00 0.00 4.55
3986 4271 3.353836 CTGCACGGTGGGTTTCGG 61.354 66.667 10.60 0.00 0.00 4.30
3987 4272 3.353836 CCTGCACGGTGGGTTTCG 61.354 66.667 10.60 0.00 0.00 3.46
3988 4273 2.203294 ACCTGCACGGTGGGTTTC 60.203 61.111 10.60 0.00 46.80 2.78
4000 4285 0.606401 ACACATACACCTGCACCTGC 60.606 55.000 0.00 0.00 42.50 4.85
4001 4286 2.760634 TACACATACACCTGCACCTG 57.239 50.000 0.00 0.00 0.00 4.00
4002 4287 2.170607 GGATACACATACACCTGCACCT 59.829 50.000 0.00 0.00 0.00 4.00
4003 4288 2.093181 TGGATACACATACACCTGCACC 60.093 50.000 0.00 0.00 46.17 5.01
4004 4289 3.260475 TGGATACACATACACCTGCAC 57.740 47.619 0.00 0.00 46.17 4.57
4037 4322 2.258591 CGTCACTCACCACCGGAG 59.741 66.667 9.46 0.00 38.36 4.63
4038 4323 2.520020 ACGTCACTCACCACCGGA 60.520 61.111 9.46 0.00 0.00 5.14
4039 4324 2.355837 CACGTCACTCACCACCGG 60.356 66.667 0.00 0.00 0.00 5.28
4040 4325 1.371758 CTCACGTCACTCACCACCG 60.372 63.158 0.00 0.00 0.00 4.94
4041 4326 1.006102 CCTCACGTCACTCACCACC 60.006 63.158 0.00 0.00 0.00 4.61
4042 4327 1.664965 GCCTCACGTCACTCACCAC 60.665 63.158 0.00 0.00 0.00 4.16
4043 4328 1.681486 TTGCCTCACGTCACTCACCA 61.681 55.000 0.00 0.00 0.00 4.17
4044 4329 0.531974 TTTGCCTCACGTCACTCACC 60.532 55.000 0.00 0.00 0.00 4.02
4045 4330 1.003866 GTTTTGCCTCACGTCACTCAC 60.004 52.381 0.00 0.00 0.00 3.51
4046 4331 1.295792 GTTTTGCCTCACGTCACTCA 58.704 50.000 0.00 0.00 0.00 3.41
4047 4332 0.232303 CGTTTTGCCTCACGTCACTC 59.768 55.000 0.00 0.00 0.00 3.51
4048 4333 1.157870 CCGTTTTGCCTCACGTCACT 61.158 55.000 0.00 0.00 34.47 3.41
4049 4334 1.155424 TCCGTTTTGCCTCACGTCAC 61.155 55.000 0.00 0.00 34.47 3.67
4050 4335 0.250124 ATCCGTTTTGCCTCACGTCA 60.250 50.000 0.00 0.00 34.47 4.35
4051 4336 0.872388 AATCCGTTTTGCCTCACGTC 59.128 50.000 0.00 0.00 34.47 4.34
4052 4337 1.001815 CAAATCCGTTTTGCCTCACGT 60.002 47.619 0.00 0.00 38.42 4.49
4053 4338 1.685302 CAAATCCGTTTTGCCTCACG 58.315 50.000 0.00 0.00 38.42 4.35
4060 4345 2.433637 CGGCAGCAAATCCGTTTTG 58.566 52.632 0.00 4.24 46.22 2.44
4061 4346 4.963815 CGGCAGCAAATCCGTTTT 57.036 50.000 0.00 0.00 40.72 2.43
4066 4351 4.481112 CGCCACGGCAGCAAATCC 62.481 66.667 9.11 0.00 42.06 3.01
4067 4352 3.386867 CTCGCCACGGCAGCAAATC 62.387 63.158 9.11 0.00 42.06 2.17
4068 4353 3.434319 CTCGCCACGGCAGCAAAT 61.434 61.111 9.11 0.00 42.06 2.32
4076 4361 4.379243 AGACCTTGCTCGCCACGG 62.379 66.667 0.00 0.00 38.74 4.94
4077 4362 3.114616 CAGACCTTGCTCGCCACG 61.115 66.667 0.00 0.00 0.00 4.94
4078 4363 2.029844 GTCAGACCTTGCTCGCCAC 61.030 63.158 0.00 0.00 0.00 5.01
4079 4364 1.830587 ATGTCAGACCTTGCTCGCCA 61.831 55.000 0.00 0.00 0.00 5.69
4080 4365 1.078848 ATGTCAGACCTTGCTCGCC 60.079 57.895 0.00 0.00 0.00 5.54
4081 4366 0.671781 ACATGTCAGACCTTGCTCGC 60.672 55.000 0.00 0.00 0.00 5.03
4082 4367 1.073964 CACATGTCAGACCTTGCTCG 58.926 55.000 0.00 0.00 0.00 5.03
4083 4368 0.801251 GCACATGTCAGACCTTGCTC 59.199 55.000 0.00 0.00 0.00 4.26
4084 4369 0.952497 CGCACATGTCAGACCTTGCT 60.952 55.000 13.48 0.00 0.00 3.91
4085 4370 0.950555 TCGCACATGTCAGACCTTGC 60.951 55.000 0.00 3.26 0.00 4.01
4086 4371 0.792640 GTCGCACATGTCAGACCTTG 59.207 55.000 15.70 0.00 0.00 3.61
4087 4372 0.667487 CGTCGCACATGTCAGACCTT 60.667 55.000 18.97 0.00 0.00 3.50
4088 4373 1.080501 CGTCGCACATGTCAGACCT 60.081 57.895 18.97 0.00 0.00 3.85
4089 4374 0.458543 ATCGTCGCACATGTCAGACC 60.459 55.000 18.97 6.95 0.00 3.85
4090 4375 0.917259 GATCGTCGCACATGTCAGAC 59.083 55.000 16.31 16.31 0.00 3.51
4091 4376 0.525761 TGATCGTCGCACATGTCAGA 59.474 50.000 0.00 0.00 0.00 3.27
4092 4377 0.642291 GTGATCGTCGCACATGTCAG 59.358 55.000 0.00 0.00 36.31 3.51
4093 4378 0.243636 AGTGATCGTCGCACATGTCA 59.756 50.000 0.00 0.00 38.70 3.58
4094 4379 0.642291 CAGTGATCGTCGCACATGTC 59.358 55.000 0.00 0.00 38.70 3.06
4095 4380 0.737367 CCAGTGATCGTCGCACATGT 60.737 55.000 0.00 0.00 38.70 3.21
4096 4381 0.458370 TCCAGTGATCGTCGCACATG 60.458 55.000 5.90 0.00 38.70 3.21
4097 4382 0.458543 GTCCAGTGATCGTCGCACAT 60.459 55.000 5.90 0.00 38.70 3.21
4098 4383 1.080772 GTCCAGTGATCGTCGCACA 60.081 57.895 5.90 0.00 38.70 4.57
4099 4384 2.152699 CGTCCAGTGATCGTCGCAC 61.153 63.158 0.00 0.00 36.53 5.34
4100 4385 2.178273 CGTCCAGTGATCGTCGCA 59.822 61.111 0.00 0.00 0.00 5.10
4101 4386 3.248171 GCGTCCAGTGATCGTCGC 61.248 66.667 0.00 0.00 37.17 5.19
4102 4387 2.579787 GGCGTCCAGTGATCGTCG 60.580 66.667 0.00 0.00 0.00 5.12
4103 4388 2.579787 CGGCGTCCAGTGATCGTC 60.580 66.667 0.00 0.00 0.00 4.20
4104 4389 3.338126 GACGGCGTCCAGTGATCGT 62.338 63.158 28.72 0.00 0.00 3.73
4105 4390 2.579787 GACGGCGTCCAGTGATCG 60.580 66.667 28.72 0.00 0.00 3.69
4106 4391 1.226717 GAGACGGCGTCCAGTGATC 60.227 63.158 34.04 20.82 32.18 2.92
4107 4392 2.711922 GGAGACGGCGTCCAGTGAT 61.712 63.158 34.04 16.55 33.84 3.06
4108 4393 3.371063 GGAGACGGCGTCCAGTGA 61.371 66.667 34.04 0.00 33.84 3.41
4120 4405 0.236711 TCGACTTGAACGACGGAGAC 59.763 55.000 0.00 0.00 34.85 3.36
4121 4406 2.620562 TCGACTTGAACGACGGAGA 58.379 52.632 0.00 0.00 34.85 3.71
4127 4412 0.031585 CACCTGGTCGACTTGAACGA 59.968 55.000 16.46 0.00 36.96 3.85
4128 4413 0.944311 CCACCTGGTCGACTTGAACG 60.944 60.000 16.46 0.16 36.96 3.95
4129 4414 0.391597 TCCACCTGGTCGACTTGAAC 59.608 55.000 16.46 0.00 36.34 3.18
4130 4415 0.391597 GTCCACCTGGTCGACTTGAA 59.608 55.000 16.12 0.00 36.34 2.69
4131 4416 1.802337 CGTCCACCTGGTCGACTTGA 61.802 60.000 19.97 0.00 46.88 3.02
4132 4417 1.372997 CGTCCACCTGGTCGACTTG 60.373 63.158 19.97 8.35 46.88 3.16
4133 4418 1.803366 GACGTCCACCTGGTCGACTT 61.803 60.000 19.97 12.46 46.88 3.01
4134 4419 2.203451 ACGTCCACCTGGTCGACT 60.203 61.111 19.97 6.83 46.88 4.18
4135 4420 2.257676 GACGTCCACCTGGTCGAC 59.742 66.667 13.79 13.79 46.88 4.20
4136 4421 2.987547 GGACGTCCACCTGGTCGA 60.988 66.667 29.75 1.41 46.88 4.20
4138 4423 4.065281 CCGGACGTCCACCTGGTC 62.065 72.222 32.80 4.76 36.34 4.02
4141 4426 4.065281 GACCCGGACGTCCACCTG 62.065 72.222 32.80 19.43 35.14 4.00
4162 4447 3.402681 ATCCTGGAGGCCACCACG 61.403 66.667 19.11 14.65 35.91 4.94
4163 4448 2.273449 CATCCTGGAGGCCACCAC 59.727 66.667 19.11 0.00 35.91 4.16
4164 4449 3.016971 CCATCCTGGAGGCCACCA 61.017 66.667 21.65 21.65 40.96 4.17
4165 4450 4.512914 GCCATCCTGGAGGCCACC 62.513 72.222 20.16 13.09 45.18 4.61
4170 4455 1.133976 CCAACTAAGCCATCCTGGAGG 60.134 57.143 1.52 0.91 40.96 4.30
4171 4456 1.748591 GCCAACTAAGCCATCCTGGAG 60.749 57.143 1.52 0.00 40.96 3.86
4172 4457 0.255890 GCCAACTAAGCCATCCTGGA 59.744 55.000 0.00 0.00 40.96 3.86
4173 4458 1.097547 CGCCAACTAAGCCATCCTGG 61.098 60.000 0.00 0.00 41.55 4.45
4174 4459 1.097547 CCGCCAACTAAGCCATCCTG 61.098 60.000 0.00 0.00 0.00 3.86
4175 4460 1.224592 CCGCCAACTAAGCCATCCT 59.775 57.895 0.00 0.00 0.00 3.24
4176 4461 1.077716 ACCGCCAACTAAGCCATCC 60.078 57.895 0.00 0.00 0.00 3.51
4177 4462 0.392461 TCACCGCCAACTAAGCCATC 60.392 55.000 0.00 0.00 0.00 3.51
4178 4463 0.037590 TTCACCGCCAACTAAGCCAT 59.962 50.000 0.00 0.00 0.00 4.40
4179 4464 0.605319 CTTCACCGCCAACTAAGCCA 60.605 55.000 0.00 0.00 0.00 4.75
4180 4465 0.605589 ACTTCACCGCCAACTAAGCC 60.606 55.000 0.00 0.00 0.00 4.35
4181 4466 0.517316 CACTTCACCGCCAACTAAGC 59.483 55.000 0.00 0.00 0.00 3.09
4182 4467 0.517316 GCACTTCACCGCCAACTAAG 59.483 55.000 0.00 0.00 0.00 2.18
4183 4468 1.225376 CGCACTTCACCGCCAACTAA 61.225 55.000 0.00 0.00 0.00 2.24
4184 4469 1.666553 CGCACTTCACCGCCAACTA 60.667 57.895 0.00 0.00 0.00 2.24
4185 4470 2.972505 CGCACTTCACCGCCAACT 60.973 61.111 0.00 0.00 0.00 3.16
4186 4471 4.683334 GCGCACTTCACCGCCAAC 62.683 66.667 0.30 0.00 44.10 3.77
4192 4477 3.044305 AAGCTCGCGCACTTCACC 61.044 61.111 8.75 0.00 39.10 4.02
4193 4478 2.171940 CAAGCTCGCGCACTTCAC 59.828 61.111 8.75 0.00 39.10 3.18
4194 4479 2.028925 TCAAGCTCGCGCACTTCA 59.971 55.556 8.75 0.00 39.10 3.02
4195 4480 2.472049 GTCAAGCTCGCGCACTTC 59.528 61.111 8.75 0.00 39.10 3.01
4196 4481 3.406361 CGTCAAGCTCGCGCACTT 61.406 61.111 8.75 4.12 39.10 3.16
4197 4482 3.841379 TTCGTCAAGCTCGCGCACT 62.841 57.895 8.75 0.00 39.10 4.40
4198 4483 3.403057 TTCGTCAAGCTCGCGCAC 61.403 61.111 8.75 0.00 39.10 5.34
4199 4484 3.403057 GTTCGTCAAGCTCGCGCA 61.403 61.111 8.75 0.00 39.10 6.09
4200 4485 4.470050 CGTTCGTCAAGCTCGCGC 62.470 66.667 0.00 0.00 0.00 6.86
4201 4486 3.827784 CCGTTCGTCAAGCTCGCG 61.828 66.667 0.00 0.00 0.00 5.87
4202 4487 4.135493 GCCGTTCGTCAAGCTCGC 62.135 66.667 0.00 0.00 0.00 5.03
4203 4488 3.827784 CGCCGTTCGTCAAGCTCG 61.828 66.667 0.00 0.00 0.00 5.03
4204 4489 4.135493 GCGCCGTTCGTCAAGCTC 62.135 66.667 0.00 0.00 41.07 4.09
4212 4497 4.025401 AAAAGCTGGCGCCGTTCG 62.025 61.111 23.90 11.23 42.12 3.95
4213 4498 2.429069 CAAAAGCTGGCGCCGTTC 60.429 61.111 23.90 13.22 36.60 3.95
4214 4499 4.645921 GCAAAAGCTGGCGCCGTT 62.646 61.111 23.90 12.56 36.60 4.44
4225 4510 3.310303 GCGTACTAGATGCTGCAAAAG 57.690 47.619 6.36 7.06 37.09 2.27
4233 4518 2.464865 CCAACAGAGCGTACTAGATGC 58.535 52.381 0.00 0.00 40.75 3.91
4234 4519 2.464865 GCCAACAGAGCGTACTAGATG 58.535 52.381 0.00 0.00 0.00 2.90
4235 4520 1.409427 GGCCAACAGAGCGTACTAGAT 59.591 52.381 0.00 0.00 0.00 1.98
4236 4521 0.815734 GGCCAACAGAGCGTACTAGA 59.184 55.000 0.00 0.00 0.00 2.43
4237 4522 0.525668 CGGCCAACAGAGCGTACTAG 60.526 60.000 2.24 0.00 0.00 2.57
4238 4523 1.509463 CGGCCAACAGAGCGTACTA 59.491 57.895 2.24 0.00 0.00 1.82
4239 4524 2.261671 CGGCCAACAGAGCGTACT 59.738 61.111 2.24 0.00 0.00 2.73
4240 4525 2.813908 CCGGCCAACAGAGCGTAC 60.814 66.667 2.24 0.00 0.00 3.67
4241 4526 4.752879 GCCGGCCAACAGAGCGTA 62.753 66.667 18.11 0.00 0.00 4.42
4267 4552 4.175337 TGCGGTGCAGGATAGCCC 62.175 66.667 0.00 0.00 33.32 5.19
4286 4571 3.818787 CTGTTGCATCGCCTGGGC 61.819 66.667 0.82 0.82 37.85 5.36
4287 4572 3.136123 CCTGTTGCATCGCCTGGG 61.136 66.667 0.00 0.00 0.00 4.45
4288 4573 2.046023 TCCTGTTGCATCGCCTGG 60.046 61.111 0.00 0.00 0.00 4.45
4289 4574 1.642037 CTGTCCTGTTGCATCGCCTG 61.642 60.000 0.00 0.00 0.00 4.85
4290 4575 1.376424 CTGTCCTGTTGCATCGCCT 60.376 57.895 0.00 0.00 0.00 5.52
4291 4576 2.401766 CCTGTCCTGTTGCATCGCC 61.402 63.158 0.00 0.00 0.00 5.54
4292 4577 3.044059 GCCTGTCCTGTTGCATCGC 62.044 63.158 0.00 0.00 0.00 4.58
4293 4578 2.743752 CGCCTGTCCTGTTGCATCG 61.744 63.158 0.00 0.00 0.00 3.84
4294 4579 0.745845 ATCGCCTGTCCTGTTGCATC 60.746 55.000 0.00 0.00 0.00 3.91
4295 4580 0.745845 GATCGCCTGTCCTGTTGCAT 60.746 55.000 0.00 0.00 0.00 3.96
4296 4581 1.375908 GATCGCCTGTCCTGTTGCA 60.376 57.895 0.00 0.00 0.00 4.08
4297 4582 2.456119 CGATCGCCTGTCCTGTTGC 61.456 63.158 0.26 0.00 0.00 4.17
4298 4583 0.389817 TTCGATCGCCTGTCCTGTTG 60.390 55.000 11.09 0.00 0.00 3.33
4299 4584 0.537188 ATTCGATCGCCTGTCCTGTT 59.463 50.000 11.09 0.00 0.00 3.16
4300 4585 0.179100 CATTCGATCGCCTGTCCTGT 60.179 55.000 11.09 0.00 0.00 4.00
4301 4586 0.103026 TCATTCGATCGCCTGTCCTG 59.897 55.000 11.09 0.10 0.00 3.86
4302 4587 0.387202 CTCATTCGATCGCCTGTCCT 59.613 55.000 11.09 0.00 0.00 3.85
4303 4588 1.218230 GCTCATTCGATCGCCTGTCC 61.218 60.000 11.09 2.64 0.00 4.02
4304 4589 0.249238 AGCTCATTCGATCGCCTGTC 60.249 55.000 11.09 6.88 0.00 3.51
4305 4590 0.249238 GAGCTCATTCGATCGCCTGT 60.249 55.000 11.09 0.00 0.00 4.00
4306 4591 0.943359 GGAGCTCATTCGATCGCCTG 60.943 60.000 17.19 10.20 0.00 4.85
4307 4592 1.365633 GGAGCTCATTCGATCGCCT 59.634 57.895 17.19 0.00 0.00 5.52
4308 4593 1.666234 GGGAGCTCATTCGATCGCC 60.666 63.158 17.19 2.69 0.00 5.54
4309 4594 0.943359 CAGGGAGCTCATTCGATCGC 60.943 60.000 17.19 0.00 33.12 4.58
4310 4595 0.387202 ACAGGGAGCTCATTCGATCG 59.613 55.000 17.19 9.36 0.00 3.69
4311 4596 2.208431 CAACAGGGAGCTCATTCGATC 58.792 52.381 17.19 0.00 0.00 3.69
4312 4597 1.745141 GCAACAGGGAGCTCATTCGAT 60.745 52.381 17.19 0.00 0.00 3.59
4313 4598 0.391661 GCAACAGGGAGCTCATTCGA 60.392 55.000 17.19 0.00 0.00 3.71
4314 4599 0.674581 TGCAACAGGGAGCTCATTCG 60.675 55.000 17.19 3.03 0.00 3.34
4315 4600 0.807496 GTGCAACAGGGAGCTCATTC 59.193 55.000 17.19 4.42 36.32 2.67
4316 4601 0.610232 GGTGCAACAGGGAGCTCATT 60.610 55.000 17.19 0.00 39.98 2.57
4317 4602 1.001641 GGTGCAACAGGGAGCTCAT 60.002 57.895 17.19 0.00 39.98 2.90
4318 4603 2.431683 GGTGCAACAGGGAGCTCA 59.568 61.111 17.19 0.00 39.98 4.26
4319 4604 2.167398 TACGGTGCAACAGGGAGCTC 62.167 60.000 4.71 4.71 39.98 4.09
4320 4605 1.553690 ATACGGTGCAACAGGGAGCT 61.554 55.000 0.98 0.00 39.98 4.09
4321 4606 1.078426 ATACGGTGCAACAGGGAGC 60.078 57.895 0.98 0.00 39.98 4.70
4322 4607 0.537188 AGATACGGTGCAACAGGGAG 59.463 55.000 0.98 0.00 39.98 4.30
4323 4608 0.981183 AAGATACGGTGCAACAGGGA 59.019 50.000 0.98 0.00 39.98 4.20
4324 4609 1.369625 GAAGATACGGTGCAACAGGG 58.630 55.000 0.98 0.00 39.98 4.45
4325 4610 1.338674 TGGAAGATACGGTGCAACAGG 60.339 52.381 0.98 0.00 39.98 4.00
4326 4611 2.002586 CTGGAAGATACGGTGCAACAG 58.997 52.381 0.98 0.00 34.28 3.16
4327 4612 1.621317 TCTGGAAGATACGGTGCAACA 59.379 47.619 0.98 0.00 38.67 3.33
4328 4613 2.380084 TCTGGAAGATACGGTGCAAC 57.620 50.000 0.00 0.00 38.67 4.17
4329 4614 2.354704 CCTTCTGGAAGATACGGTGCAA 60.355 50.000 11.44 0.00 46.36 4.08
4330 4615 1.207089 CCTTCTGGAAGATACGGTGCA 59.793 52.381 11.44 0.00 46.36 4.57
4331 4616 1.207329 ACCTTCTGGAAGATACGGTGC 59.793 52.381 11.44 0.00 46.36 5.01
4332 4617 2.761208 AGACCTTCTGGAAGATACGGTG 59.239 50.000 11.44 0.00 46.36 4.94
4333 4618 2.761208 CAGACCTTCTGGAAGATACGGT 59.239 50.000 11.44 1.96 46.36 4.83
4334 4619 2.482142 GCAGACCTTCTGGAAGATACGG 60.482 54.545 11.44 0.00 46.36 4.02
4335 4620 2.428890 AGCAGACCTTCTGGAAGATACG 59.571 50.000 11.44 0.00 46.36 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.