Multiple sequence alignment - TraesCS7D01G443300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G443300 chr7D 100.000 2717 0 0 1 2717 563348787 563346071 0.000000e+00 5018.0
1 TraesCS7D01G443300 chr1A 96.277 1746 65 0 1 1746 440178232 440176487 0.000000e+00 2865.0
2 TraesCS7D01G443300 chr5A 94.082 1656 89 9 60 1712 600185206 600183557 0.000000e+00 2507.0
3 TraesCS7D01G443300 chr5A 95.085 1404 68 1 321 1723 110111639 110113042 0.000000e+00 2209.0
4 TraesCS7D01G443300 chr2D 93.531 742 40 2 1003 1743 32067433 32066699 0.000000e+00 1098.0
5 TraesCS7D01G443300 chr2D 87.578 644 67 8 2079 2711 14960207 14960848 0.000000e+00 734.0
6 TraesCS7D01G443300 chr2D 81.949 626 105 6 766 1390 7296222 7295604 8.620000e-145 523.0
7 TraesCS7D01G443300 chr5D 90.669 643 48 8 2080 2711 291915799 291916440 0.000000e+00 845.0
8 TraesCS7D01G443300 chr5D 87.736 636 71 6 2079 2709 4221541 4220908 0.000000e+00 736.0
9 TraesCS7D01G443300 chr4D 90.047 643 51 7 2082 2711 111850377 111851019 0.000000e+00 821.0
10 TraesCS7D01G443300 chr5B 90.717 614 54 3 1133 1743 712035904 712035291 0.000000e+00 815.0
11 TraesCS7D01G443300 chr5B 90.228 614 57 3 1133 1743 712017455 712016842 0.000000e+00 798.0
12 TraesCS7D01G443300 chr3D 89.515 639 51 11 2080 2711 192146286 192146915 0.000000e+00 795.0
13 TraesCS7D01G443300 chr6D 90.000 620 46 10 2092 2709 13145179 13144574 0.000000e+00 787.0
14 TraesCS7D01G443300 chr3A 89.011 637 58 8 2086 2711 532345249 532345884 0.000000e+00 778.0
15 TraesCS7D01G443300 chr3A 89.435 407 32 3 1325 1731 152450862 152451257 1.120000e-138 503.0
16 TraesCS7D01G443300 chr6A 88.748 631 58 10 2085 2711 373070445 373069824 0.000000e+00 760.0
17 TraesCS7D01G443300 chr4A 88.300 641 57 12 2076 2711 610458761 610459388 0.000000e+00 752.0
18 TraesCS7D01G443300 chr3B 92.448 384 27 2 1361 1743 13772156 13771774 5.110000e-152 547.0
19 TraesCS7D01G443300 chr7A 93.258 356 21 3 1388 1742 708626578 708626931 3.100000e-144 521.0
20 TraesCS7D01G443300 chr7A 92.997 357 22 3 1388 1743 708660602 708660956 4.010000e-143 518.0
21 TraesCS7D01G443300 chr6B 73.558 624 153 12 8 625 583459332 583458715 7.570000e-56 228.0
22 TraesCS7D01G443300 chr6B 71.498 614 165 10 8 616 630871603 630870995 3.620000e-34 156.0
23 TraesCS7D01G443300 chr2B 100.000 28 0 0 1006 1033 50454314 50454341 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G443300 chr7D 563346071 563348787 2716 True 5018 5018 100.000 1 2717 1 chr7D.!!$R1 2716
1 TraesCS7D01G443300 chr1A 440176487 440178232 1745 True 2865 2865 96.277 1 1746 1 chr1A.!!$R1 1745
2 TraesCS7D01G443300 chr5A 600183557 600185206 1649 True 2507 2507 94.082 60 1712 1 chr5A.!!$R1 1652
3 TraesCS7D01G443300 chr5A 110111639 110113042 1403 False 2209 2209 95.085 321 1723 1 chr5A.!!$F1 1402
4 TraesCS7D01G443300 chr2D 32066699 32067433 734 True 1098 1098 93.531 1003 1743 1 chr2D.!!$R2 740
5 TraesCS7D01G443300 chr2D 14960207 14960848 641 False 734 734 87.578 2079 2711 1 chr2D.!!$F1 632
6 TraesCS7D01G443300 chr2D 7295604 7296222 618 True 523 523 81.949 766 1390 1 chr2D.!!$R1 624
7 TraesCS7D01G443300 chr5D 291915799 291916440 641 False 845 845 90.669 2080 2711 1 chr5D.!!$F1 631
8 TraesCS7D01G443300 chr5D 4220908 4221541 633 True 736 736 87.736 2079 2709 1 chr5D.!!$R1 630
9 TraesCS7D01G443300 chr4D 111850377 111851019 642 False 821 821 90.047 2082 2711 1 chr4D.!!$F1 629
10 TraesCS7D01G443300 chr5B 712035291 712035904 613 True 815 815 90.717 1133 1743 1 chr5B.!!$R2 610
11 TraesCS7D01G443300 chr5B 712016842 712017455 613 True 798 798 90.228 1133 1743 1 chr5B.!!$R1 610
12 TraesCS7D01G443300 chr3D 192146286 192146915 629 False 795 795 89.515 2080 2711 1 chr3D.!!$F1 631
13 TraesCS7D01G443300 chr6D 13144574 13145179 605 True 787 787 90.000 2092 2709 1 chr6D.!!$R1 617
14 TraesCS7D01G443300 chr3A 532345249 532345884 635 False 778 778 89.011 2086 2711 1 chr3A.!!$F2 625
15 TraesCS7D01G443300 chr6A 373069824 373070445 621 True 760 760 88.748 2085 2711 1 chr6A.!!$R1 626
16 TraesCS7D01G443300 chr4A 610458761 610459388 627 False 752 752 88.300 2076 2711 1 chr4A.!!$F1 635
17 TraesCS7D01G443300 chr6B 583458715 583459332 617 True 228 228 73.558 8 625 1 chr6B.!!$R1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 212 1.000717 GCCCAAACAGTTTATGTGCGT 60.001 47.619 0.0 0.0 43.0 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 1943 0.10212 TTTTGGTGAAGTGGCGCAAG 59.898 50.0 10.83 0.0 43.44 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 197 4.016444 GTGGAGATTAATTGACAGCCCAA 58.984 43.478 0.00 0.00 0.00 4.12
211 212 1.000717 GCCCAAACAGTTTATGTGCGT 60.001 47.619 0.00 0.00 43.00 5.24
237 238 7.040617 TGTTTACTGAAGGCTAGATACTATCCG 60.041 40.741 0.00 0.00 0.00 4.18
269 270 2.210116 GCTTGACACGGTTTTCTCTGA 58.790 47.619 0.00 0.00 0.00 3.27
346 347 4.164981 AGGATTAATATGGCGAGTGGGTA 58.835 43.478 0.00 0.00 0.00 3.69
592 593 2.667348 TTCCCTGAGAGGAACGGTC 58.333 57.895 0.00 0.00 41.08 4.79
650 651 5.643664 TGCTGAACATGATGAACTATTTGC 58.356 37.500 0.00 0.00 0.00 3.68
966 967 2.421248 GGGAAGAGATTGGCTTCTGAGG 60.421 54.545 0.00 0.00 41.11 3.86
987 988 1.317613 TGCTTTCTTCATGCAACGGT 58.682 45.000 0.00 0.00 32.71 4.83
1095 1096 7.205297 CACCTCAAACATCTGTTGATTTTCTT 58.795 34.615 0.00 0.00 38.44 2.52
1128 1129 0.602638 ATTCGTTGCGGCTGTCAAGA 60.603 50.000 0.00 1.90 0.00 3.02
1211 1212 0.737715 GCGATCAAAGTCTCACCGCT 60.738 55.000 0.00 0.00 38.36 5.52
1418 1420 2.505407 TGATGCAAGGTATGGCACTAGT 59.495 45.455 0.00 0.00 43.75 2.57
1437 1439 4.487714 AGTGAAACAACACTCTGAAGGA 57.512 40.909 0.00 0.00 46.36 3.36
1455 1457 1.009829 GACCGATCATTGTGCAGTCC 58.990 55.000 0.00 0.00 0.00 3.85
1495 1497 4.632153 GGCTTCTCTCAAAGGCGATAATA 58.368 43.478 0.00 0.00 41.27 0.98
1592 1594 9.243637 CCAGAAAATTTCTCGTGAACAAAATAA 57.756 29.630 5.09 0.00 38.11 1.40
1660 1662 0.978151 TGTATGGCTACACCGTGGTT 59.022 50.000 3.03 0.00 43.94 3.67
1665 1668 1.669440 GCTACACCGTGGTTCTCCA 59.331 57.895 3.03 0.00 42.05 3.86
1667 1670 1.338769 GCTACACCGTGGTTCTCCATT 60.339 52.381 3.03 0.00 46.20 3.16
1700 1703 0.396435 CTGCCACTGGACTGTAACCA 59.604 55.000 0.00 0.00 35.96 3.67
1732 1735 5.337788 TGGAATAAAACACCTATTTGCCCT 58.662 37.500 0.00 0.00 0.00 5.19
1734 1737 5.420739 GGAATAAAACACCTATTTGCCCTGA 59.579 40.000 0.00 0.00 0.00 3.86
1771 1774 9.173939 GATATGAAAAATAAATGCCTTGTCTCG 57.826 33.333 0.00 0.00 0.00 4.04
1772 1775 5.160641 TGAAAAATAAATGCCTTGTCTCGC 58.839 37.500 0.00 0.00 0.00 5.03
1773 1776 4.782019 AAAATAAATGCCTTGTCTCGCA 57.218 36.364 0.00 0.00 39.79 5.10
1774 1777 3.764885 AATAAATGCCTTGTCTCGCAC 57.235 42.857 0.00 0.00 37.93 5.34
1775 1778 1.075542 TAAATGCCTTGTCTCGCACG 58.924 50.000 0.00 0.00 37.93 5.34
1776 1779 1.577328 AAATGCCTTGTCTCGCACGG 61.577 55.000 0.00 0.00 37.93 4.94
1777 1780 2.449031 AATGCCTTGTCTCGCACGGA 62.449 55.000 0.00 0.00 38.67 4.69
1778 1781 2.357034 GCCTTGTCTCGCACGGAA 60.357 61.111 0.00 0.00 38.67 4.30
1779 1782 1.741770 GCCTTGTCTCGCACGGAAT 60.742 57.895 0.00 0.00 38.67 3.01
1780 1783 1.696832 GCCTTGTCTCGCACGGAATC 61.697 60.000 0.00 0.00 38.67 2.52
1781 1784 0.389817 CCTTGTCTCGCACGGAATCA 60.390 55.000 0.00 0.00 38.67 2.57
1782 1785 0.716108 CTTGTCTCGCACGGAATCAC 59.284 55.000 0.00 0.00 0.00 3.06
1783 1786 0.317160 TTGTCTCGCACGGAATCACT 59.683 50.000 0.00 0.00 0.00 3.41
1784 1787 1.170442 TGTCTCGCACGGAATCACTA 58.830 50.000 0.00 0.00 0.00 2.74
1785 1788 1.542472 TGTCTCGCACGGAATCACTAA 59.458 47.619 0.00 0.00 0.00 2.24
1786 1789 1.918609 GTCTCGCACGGAATCACTAAC 59.081 52.381 0.00 0.00 0.00 2.34
1787 1790 0.914551 CTCGCACGGAATCACTAACG 59.085 55.000 0.00 0.00 0.00 3.18
1788 1791 0.241749 TCGCACGGAATCACTAACGT 59.758 50.000 0.00 0.00 40.60 3.99
1791 1794 3.132863 ACGGAATCACTAACGTGGC 57.867 52.632 0.00 0.00 41.53 5.01
1792 1795 0.319083 ACGGAATCACTAACGTGGCA 59.681 50.000 0.00 0.00 41.53 4.92
1793 1796 1.066430 ACGGAATCACTAACGTGGCAT 60.066 47.619 0.00 0.00 41.53 4.40
1794 1797 1.327460 CGGAATCACTAACGTGGCATG 59.673 52.381 4.87 4.87 41.53 4.06
1795 1798 1.670811 GGAATCACTAACGTGGCATGG 59.329 52.381 12.05 0.00 41.53 3.66
1796 1799 1.670811 GAATCACTAACGTGGCATGGG 59.329 52.381 12.05 3.56 41.53 4.00
1797 1800 0.618458 ATCACTAACGTGGCATGGGT 59.382 50.000 12.05 4.19 41.53 4.51
1798 1801 0.398696 TCACTAACGTGGCATGGGTT 59.601 50.000 12.05 8.96 41.53 4.11
1799 1802 0.521291 CACTAACGTGGCATGGGTTG 59.479 55.000 12.05 2.41 37.50 3.77
1811 1814 3.827634 GGGTTGCCCGCTTAGATG 58.172 61.111 0.00 0.00 32.13 2.90
1812 1815 2.481471 GGGTTGCCCGCTTAGATGC 61.481 63.158 0.00 0.00 32.13 3.91
1813 1816 1.748879 GGTTGCCCGCTTAGATGCA 60.749 57.895 0.00 0.00 0.00 3.96
1814 1817 1.429423 GTTGCCCGCTTAGATGCAC 59.571 57.895 0.00 0.00 32.63 4.57
1815 1818 1.002746 TTGCCCGCTTAGATGCACA 60.003 52.632 0.00 0.00 32.63 4.57
1816 1819 0.394216 TTGCCCGCTTAGATGCACAT 60.394 50.000 0.00 0.00 32.63 3.21
1817 1820 0.467804 TGCCCGCTTAGATGCACATA 59.532 50.000 0.00 0.00 0.00 2.29
1818 1821 0.868406 GCCCGCTTAGATGCACATAC 59.132 55.000 0.00 0.00 0.00 2.39
1819 1822 1.810031 GCCCGCTTAGATGCACATACA 60.810 52.381 0.00 0.00 0.00 2.29
1820 1823 2.138320 CCCGCTTAGATGCACATACAG 58.862 52.381 0.00 0.00 0.00 2.74
1821 1824 2.224042 CCCGCTTAGATGCACATACAGA 60.224 50.000 0.00 0.00 0.00 3.41
1822 1825 3.055591 CCGCTTAGATGCACATACAGAG 58.944 50.000 0.00 0.00 0.00 3.35
1823 1826 3.491619 CCGCTTAGATGCACATACAGAGT 60.492 47.826 0.00 0.00 0.00 3.24
1824 1827 3.488678 CGCTTAGATGCACATACAGAGTG 59.511 47.826 0.00 0.00 39.92 3.51
1825 1828 3.806521 GCTTAGATGCACATACAGAGTGG 59.193 47.826 0.00 0.00 37.46 4.00
1826 1829 4.681781 GCTTAGATGCACATACAGAGTGGT 60.682 45.833 0.00 0.00 37.46 4.16
1827 1830 5.451937 GCTTAGATGCACATACAGAGTGGTA 60.452 44.000 0.00 0.00 37.46 3.25
1828 1831 6.538945 TTAGATGCACATACAGAGTGGTAA 57.461 37.500 0.00 0.00 37.46 2.85
1829 1832 5.420725 AGATGCACATACAGAGTGGTAAA 57.579 39.130 0.00 0.00 37.46 2.01
1830 1833 5.423015 AGATGCACATACAGAGTGGTAAAG 58.577 41.667 0.00 0.00 37.46 1.85
1831 1834 4.617253 TGCACATACAGAGTGGTAAAGT 57.383 40.909 0.00 0.00 37.46 2.66
1832 1835 4.968259 TGCACATACAGAGTGGTAAAGTT 58.032 39.130 0.00 0.00 37.46 2.66
1833 1836 4.994852 TGCACATACAGAGTGGTAAAGTTC 59.005 41.667 0.00 0.00 37.46 3.01
1834 1837 5.221641 TGCACATACAGAGTGGTAAAGTTCT 60.222 40.000 0.00 0.00 37.46 3.01
1835 1838 5.701290 GCACATACAGAGTGGTAAAGTTCTT 59.299 40.000 0.00 0.00 37.46 2.52
1836 1839 6.128526 GCACATACAGAGTGGTAAAGTTCTTC 60.129 42.308 0.00 0.00 37.46 2.87
1837 1840 6.929049 CACATACAGAGTGGTAAAGTTCTTCA 59.071 38.462 0.00 0.00 33.43 3.02
1838 1841 7.604164 CACATACAGAGTGGTAAAGTTCTTCAT 59.396 37.037 0.00 0.00 33.43 2.57
1839 1842 7.819900 ACATACAGAGTGGTAAAGTTCTTCATC 59.180 37.037 0.00 0.00 0.00 2.92
1840 1843 6.174720 ACAGAGTGGTAAAGTTCTTCATCA 57.825 37.500 0.00 0.00 0.00 3.07
1841 1844 6.773638 ACAGAGTGGTAAAGTTCTTCATCAT 58.226 36.000 0.00 0.00 0.00 2.45
1842 1845 6.876257 ACAGAGTGGTAAAGTTCTTCATCATC 59.124 38.462 0.00 0.00 0.00 2.92
1843 1846 7.102346 CAGAGTGGTAAAGTTCTTCATCATCT 58.898 38.462 0.00 0.00 0.00 2.90
1844 1847 8.253810 CAGAGTGGTAAAGTTCTTCATCATCTA 58.746 37.037 0.00 0.00 0.00 1.98
1845 1848 8.816894 AGAGTGGTAAAGTTCTTCATCATCTAA 58.183 33.333 0.00 0.00 0.00 2.10
1846 1849 9.436957 GAGTGGTAAAGTTCTTCATCATCTAAA 57.563 33.333 0.00 0.00 0.00 1.85
1847 1850 9.965902 AGTGGTAAAGTTCTTCATCATCTAAAT 57.034 29.630 0.00 0.00 0.00 1.40
1860 1863 9.830975 TTCATCATCTAAATTAAGATCCAACGA 57.169 29.630 0.00 0.00 33.87 3.85
1861 1864 9.830975 TCATCATCTAAATTAAGATCCAACGAA 57.169 29.630 0.00 0.00 33.87 3.85
1872 1875 5.803020 AGATCCAACGAAAAAGACTATGC 57.197 39.130 0.00 0.00 0.00 3.14
1873 1876 5.245531 AGATCCAACGAAAAAGACTATGCA 58.754 37.500 0.00 0.00 0.00 3.96
1874 1877 4.742438 TCCAACGAAAAAGACTATGCAC 57.258 40.909 0.00 0.00 0.00 4.57
1875 1878 4.130857 TCCAACGAAAAAGACTATGCACA 58.869 39.130 0.00 0.00 0.00 4.57
1876 1879 4.024387 TCCAACGAAAAAGACTATGCACAC 60.024 41.667 0.00 0.00 0.00 3.82
1877 1880 3.788434 ACGAAAAAGACTATGCACACG 57.212 42.857 0.00 0.00 0.00 4.49
1878 1881 2.096417 ACGAAAAAGACTATGCACACGC 60.096 45.455 0.00 0.00 39.24 5.34
1879 1882 2.495939 GAAAAAGACTATGCACACGCG 58.504 47.619 3.53 3.53 42.97 6.01
1880 1883 1.508632 AAAAGACTATGCACACGCGT 58.491 45.000 5.58 5.58 42.97 6.01
1881 1884 0.790207 AAAGACTATGCACACGCGTG 59.210 50.000 35.99 35.99 46.56 5.34
1882 1885 1.014044 AAGACTATGCACACGCGTGG 61.014 55.000 39.21 28.62 43.81 4.94
1883 1886 3.083600 GACTATGCACACGCGTGGC 62.084 63.158 39.21 35.25 43.81 5.01
1884 1887 3.117812 CTATGCACACGCGTGGCA 61.118 61.111 38.38 38.38 43.81 4.92
1885 1888 2.435762 TATGCACACGCGTGGCAT 60.436 55.556 41.84 41.84 43.81 4.40
1886 1889 1.151172 CTATGCACACGCGTGGCATA 61.151 55.000 40.53 40.53 43.81 3.14
1887 1890 0.741221 TATGCACACGCGTGGCATAA 60.741 50.000 41.11 32.08 41.81 1.90
1888 1891 1.375853 ATGCACACGCGTGGCATAAT 61.376 50.000 41.10 29.54 43.81 1.28
1889 1892 1.297598 GCACACGCGTGGCATAATC 60.298 57.895 39.21 17.53 43.81 1.75
1890 1893 1.705337 GCACACGCGTGGCATAATCT 61.705 55.000 39.21 16.26 43.81 2.40
1891 1894 1.566404 CACACGCGTGGCATAATCTA 58.434 50.000 39.21 0.00 39.64 1.98
1892 1895 1.257936 CACACGCGTGGCATAATCTAC 59.742 52.381 39.21 0.00 39.64 2.59
1893 1896 1.136305 ACACGCGTGGCATAATCTACT 59.864 47.619 39.21 14.19 34.19 2.57
1894 1897 1.522676 CACGCGTGGCATAATCTACTG 59.477 52.381 31.15 0.00 0.00 2.74
1895 1898 1.136305 ACGCGTGGCATAATCTACTGT 59.864 47.619 12.93 0.00 0.00 3.55
1896 1899 2.359848 ACGCGTGGCATAATCTACTGTA 59.640 45.455 12.93 0.00 0.00 2.74
1897 1900 3.005472 ACGCGTGGCATAATCTACTGTAT 59.995 43.478 12.93 0.00 0.00 2.29
1898 1901 4.216902 ACGCGTGGCATAATCTACTGTATA 59.783 41.667 12.93 0.00 0.00 1.47
1899 1902 5.105877 ACGCGTGGCATAATCTACTGTATAT 60.106 40.000 12.93 0.00 0.00 0.86
1900 1903 6.094464 ACGCGTGGCATAATCTACTGTATATA 59.906 38.462 12.93 0.00 0.00 0.86
1901 1904 6.970613 CGCGTGGCATAATCTACTGTATATAA 59.029 38.462 0.00 0.00 0.00 0.98
1902 1905 7.486870 CGCGTGGCATAATCTACTGTATATAAA 59.513 37.037 0.00 0.00 0.00 1.40
1903 1906 9.314321 GCGTGGCATAATCTACTGTATATAAAT 57.686 33.333 0.00 0.00 0.00 1.40
1914 1917 9.186837 TCTACTGTATATAAATAGCTAGCACCC 57.813 37.037 18.83 0.00 0.00 4.61
1915 1918 7.792364 ACTGTATATAAATAGCTAGCACCCA 57.208 36.000 18.83 0.00 0.00 4.51
1916 1919 7.612677 ACTGTATATAAATAGCTAGCACCCAC 58.387 38.462 18.83 2.72 0.00 4.61
1917 1920 7.455008 ACTGTATATAAATAGCTAGCACCCACT 59.545 37.037 18.83 0.00 0.00 4.00
1918 1921 8.888836 TGTATATAAATAGCTAGCACCCACTA 57.111 34.615 18.83 0.00 0.00 2.74
1919 1922 8.746530 TGTATATAAATAGCTAGCACCCACTAC 58.253 37.037 18.83 9.01 0.00 2.73
1920 1923 3.840124 AAATAGCTAGCACCCACTACC 57.160 47.619 18.83 0.00 0.00 3.18
1921 1924 2.471815 ATAGCTAGCACCCACTACCA 57.528 50.000 18.83 0.00 0.00 3.25
1922 1925 2.471815 TAGCTAGCACCCACTACCAT 57.528 50.000 18.83 0.00 0.00 3.55
1923 1926 2.471815 AGCTAGCACCCACTACCATA 57.528 50.000 18.83 0.00 0.00 2.74
1924 1927 2.759355 AGCTAGCACCCACTACCATAA 58.241 47.619 18.83 0.00 0.00 1.90
1925 1928 3.112263 AGCTAGCACCCACTACCATAAA 58.888 45.455 18.83 0.00 0.00 1.40
1926 1929 3.716872 AGCTAGCACCCACTACCATAAAT 59.283 43.478 18.83 0.00 0.00 1.40
1927 1930 4.166144 AGCTAGCACCCACTACCATAAATT 59.834 41.667 18.83 0.00 0.00 1.82
1928 1931 4.515567 GCTAGCACCCACTACCATAAATTC 59.484 45.833 10.63 0.00 0.00 2.17
1929 1932 4.862641 AGCACCCACTACCATAAATTCT 57.137 40.909 0.00 0.00 0.00 2.40
1930 1933 4.781934 AGCACCCACTACCATAAATTCTC 58.218 43.478 0.00 0.00 0.00 2.87
1931 1934 4.475016 AGCACCCACTACCATAAATTCTCT 59.525 41.667 0.00 0.00 0.00 3.10
1932 1935 4.576463 GCACCCACTACCATAAATTCTCTG 59.424 45.833 0.00 0.00 0.00 3.35
1933 1936 5.745227 CACCCACTACCATAAATTCTCTGT 58.255 41.667 0.00 0.00 0.00 3.41
1934 1937 5.817816 CACCCACTACCATAAATTCTCTGTC 59.182 44.000 0.00 0.00 0.00 3.51
1935 1938 5.487488 ACCCACTACCATAAATTCTCTGTCA 59.513 40.000 0.00 0.00 0.00 3.58
1936 1939 6.158695 ACCCACTACCATAAATTCTCTGTCAT 59.841 38.462 0.00 0.00 0.00 3.06
1937 1940 7.056635 CCCACTACCATAAATTCTCTGTCATT 58.943 38.462 0.00 0.00 0.00 2.57
1938 1941 7.557719 CCCACTACCATAAATTCTCTGTCATTT 59.442 37.037 0.00 0.00 0.00 2.32
1939 1942 8.960591 CCACTACCATAAATTCTCTGTCATTTT 58.039 33.333 0.00 0.00 0.00 1.82
1940 1943 9.994432 CACTACCATAAATTCTCTGTCATTTTC 57.006 33.333 0.00 0.00 0.00 2.29
1941 1944 9.965902 ACTACCATAAATTCTCTGTCATTTTCT 57.034 29.630 0.00 0.00 0.00 2.52
1944 1947 8.031277 ACCATAAATTCTCTGTCATTTTCTTGC 58.969 33.333 0.00 0.00 0.00 4.01
1945 1948 7.219535 CCATAAATTCTCTGTCATTTTCTTGCG 59.780 37.037 0.00 0.00 0.00 4.85
1946 1949 3.542712 TTCTCTGTCATTTTCTTGCGC 57.457 42.857 0.00 0.00 0.00 6.09
1947 1950 1.806542 TCTCTGTCATTTTCTTGCGCC 59.193 47.619 4.18 0.00 0.00 6.53
1948 1951 1.536766 CTCTGTCATTTTCTTGCGCCA 59.463 47.619 4.18 0.00 0.00 5.69
1949 1952 1.266718 TCTGTCATTTTCTTGCGCCAC 59.733 47.619 4.18 0.00 0.00 5.01
1950 1953 1.267806 CTGTCATTTTCTTGCGCCACT 59.732 47.619 4.18 0.00 0.00 4.00
1951 1954 1.680735 TGTCATTTTCTTGCGCCACTT 59.319 42.857 4.18 0.00 0.00 3.16
1952 1955 2.287547 TGTCATTTTCTTGCGCCACTTC 60.288 45.455 4.18 0.00 0.00 3.01
1953 1956 1.952990 TCATTTTCTTGCGCCACTTCA 59.047 42.857 4.18 0.00 0.00 3.02
1954 1957 2.053627 CATTTTCTTGCGCCACTTCAC 58.946 47.619 4.18 0.00 0.00 3.18
1955 1958 0.383949 TTTTCTTGCGCCACTTCACC 59.616 50.000 4.18 0.00 0.00 4.02
1956 1959 0.749818 TTTCTTGCGCCACTTCACCA 60.750 50.000 4.18 0.00 0.00 4.17
1957 1960 0.749818 TTCTTGCGCCACTTCACCAA 60.750 50.000 4.18 0.00 0.00 3.67
1958 1961 0.749818 TCTTGCGCCACTTCACCAAA 60.750 50.000 4.18 0.00 0.00 3.28
1959 1962 0.102120 CTTGCGCCACTTCACCAAAA 59.898 50.000 4.18 0.00 0.00 2.44
1960 1963 0.749649 TTGCGCCACTTCACCAAAAT 59.250 45.000 4.18 0.00 0.00 1.82
1961 1964 0.749649 TGCGCCACTTCACCAAAATT 59.250 45.000 4.18 0.00 0.00 1.82
1962 1965 1.957177 TGCGCCACTTCACCAAAATTA 59.043 42.857 4.18 0.00 0.00 1.40
1963 1966 2.560542 TGCGCCACTTCACCAAAATTAT 59.439 40.909 4.18 0.00 0.00 1.28
1964 1967 2.923020 GCGCCACTTCACCAAAATTATG 59.077 45.455 0.00 0.00 0.00 1.90
1965 1968 3.613910 GCGCCACTTCACCAAAATTATGT 60.614 43.478 0.00 0.00 0.00 2.29
1966 1969 4.380023 GCGCCACTTCACCAAAATTATGTA 60.380 41.667 0.00 0.00 0.00 2.29
1967 1970 5.331902 CGCCACTTCACCAAAATTATGTAG 58.668 41.667 0.00 0.00 0.00 2.74
1968 1971 5.102313 GCCACTTCACCAAAATTATGTAGC 58.898 41.667 0.00 0.00 0.00 3.58
1969 1972 5.650543 CCACTTCACCAAAATTATGTAGCC 58.349 41.667 0.00 0.00 0.00 3.93
1970 1973 5.184864 CCACTTCACCAAAATTATGTAGCCA 59.815 40.000 0.00 0.00 0.00 4.75
1971 1974 6.127366 CCACTTCACCAAAATTATGTAGCCAT 60.127 38.462 0.00 0.00 34.97 4.40
1972 1975 7.322664 CACTTCACCAAAATTATGTAGCCATT 58.677 34.615 0.00 0.00 32.29 3.16
1973 1976 7.276218 CACTTCACCAAAATTATGTAGCCATTG 59.724 37.037 0.00 0.00 32.29 2.82
1974 1977 6.219417 TCACCAAAATTATGTAGCCATTGG 57.781 37.500 0.00 0.00 32.50 3.16
1975 1978 5.954752 TCACCAAAATTATGTAGCCATTGGA 59.045 36.000 6.95 0.00 31.29 3.53
1976 1979 6.438741 TCACCAAAATTATGTAGCCATTGGAA 59.561 34.615 6.95 0.00 31.29 3.53
1977 1980 7.038729 TCACCAAAATTATGTAGCCATTGGAAA 60.039 33.333 6.95 0.00 31.29 3.13
1978 1981 7.769970 CACCAAAATTATGTAGCCATTGGAAAT 59.230 33.333 6.95 0.00 31.29 2.17
1979 1982 8.986991 ACCAAAATTATGTAGCCATTGGAAATA 58.013 29.630 6.95 0.00 31.29 1.40
1980 1983 9.829507 CCAAAATTATGTAGCCATTGGAAATAA 57.170 29.630 6.95 4.83 29.11 1.40
1987 1990 7.473735 TGTAGCCATTGGAAATAACAAATCA 57.526 32.000 6.95 0.00 0.00 2.57
1988 1991 7.546358 TGTAGCCATTGGAAATAACAAATCAG 58.454 34.615 6.95 0.00 0.00 2.90
1989 1992 6.610075 AGCCATTGGAAATAACAAATCAGT 57.390 33.333 6.95 0.00 0.00 3.41
1990 1993 6.633856 AGCCATTGGAAATAACAAATCAGTC 58.366 36.000 6.95 0.00 0.00 3.51
1991 1994 5.812127 GCCATTGGAAATAACAAATCAGTCC 59.188 40.000 6.95 0.00 0.00 3.85
1992 1995 6.574073 GCCATTGGAAATAACAAATCAGTCCA 60.574 38.462 6.95 0.00 31.94 4.02
1993 1996 6.813152 CCATTGGAAATAACAAATCAGTCCAC 59.187 38.462 0.00 0.00 33.53 4.02
1994 1997 6.968263 TTGGAAATAACAAATCAGTCCACA 57.032 33.333 0.00 0.00 33.53 4.17
1995 1998 6.968263 TGGAAATAACAAATCAGTCCACAA 57.032 33.333 0.00 0.00 0.00 3.33
1996 1999 6.980593 TGGAAATAACAAATCAGTCCACAAG 58.019 36.000 0.00 0.00 0.00 3.16
1997 2000 6.775142 TGGAAATAACAAATCAGTCCACAAGA 59.225 34.615 0.00 0.00 0.00 3.02
1998 2001 7.286546 TGGAAATAACAAATCAGTCCACAAGAA 59.713 33.333 0.00 0.00 0.00 2.52
1999 2002 7.595130 GGAAATAACAAATCAGTCCACAAGAAC 59.405 37.037 0.00 0.00 0.00 3.01
2000 2003 4.918810 AACAAATCAGTCCACAAGAACC 57.081 40.909 0.00 0.00 0.00 3.62
2001 2004 3.897239 ACAAATCAGTCCACAAGAACCA 58.103 40.909 0.00 0.00 0.00 3.67
2002 2005 4.473444 ACAAATCAGTCCACAAGAACCAT 58.527 39.130 0.00 0.00 0.00 3.55
2003 2006 4.520492 ACAAATCAGTCCACAAGAACCATC 59.480 41.667 0.00 0.00 0.00 3.51
2004 2007 2.859165 TCAGTCCACAAGAACCATCC 57.141 50.000 0.00 0.00 0.00 3.51
2005 2008 1.001974 TCAGTCCACAAGAACCATCCG 59.998 52.381 0.00 0.00 0.00 4.18
2006 2009 1.056660 AGTCCACAAGAACCATCCGT 58.943 50.000 0.00 0.00 0.00 4.69
2007 2010 1.420138 AGTCCACAAGAACCATCCGTT 59.580 47.619 0.00 0.00 37.41 4.44
2018 2021 5.873179 GAACCATCCGTTCTAAACATTGA 57.127 39.130 0.00 0.00 46.33 2.57
2019 2022 5.869350 GAACCATCCGTTCTAAACATTGAG 58.131 41.667 0.00 0.00 46.33 3.02
2020 2023 5.160607 ACCATCCGTTCTAAACATTGAGA 57.839 39.130 0.00 0.00 0.00 3.27
2021 2024 5.178797 ACCATCCGTTCTAAACATTGAGAG 58.821 41.667 0.00 0.00 0.00 3.20
2022 2025 5.178797 CCATCCGTTCTAAACATTGAGAGT 58.821 41.667 0.00 0.00 0.00 3.24
2023 2026 5.292101 CCATCCGTTCTAAACATTGAGAGTC 59.708 44.000 0.00 0.00 0.00 3.36
2024 2027 5.723672 TCCGTTCTAAACATTGAGAGTCT 57.276 39.130 0.00 0.00 0.00 3.24
2025 2028 5.710984 TCCGTTCTAAACATTGAGAGTCTC 58.289 41.667 13.56 13.56 0.00 3.36
2026 2029 5.477291 TCCGTTCTAAACATTGAGAGTCTCT 59.523 40.000 20.64 0.70 0.00 3.10
2027 2030 6.015350 TCCGTTCTAAACATTGAGAGTCTCTT 60.015 38.462 20.64 8.97 0.00 2.85
2028 2031 7.176165 TCCGTTCTAAACATTGAGAGTCTCTTA 59.824 37.037 20.64 9.51 0.00 2.10
2029 2032 7.813148 CCGTTCTAAACATTGAGAGTCTCTTAA 59.187 37.037 20.64 9.32 0.00 1.85
2030 2033 8.855279 CGTTCTAAACATTGAGAGTCTCTTAAG 58.145 37.037 20.64 10.48 0.00 1.85
2031 2034 8.652463 GTTCTAAACATTGAGAGTCTCTTAAGC 58.348 37.037 20.64 0.00 0.00 3.09
2032 2035 7.896811 TCTAAACATTGAGAGTCTCTTAAGCA 58.103 34.615 20.64 0.00 0.00 3.91
2033 2036 8.031864 TCTAAACATTGAGAGTCTCTTAAGCAG 58.968 37.037 20.64 9.87 0.00 4.24
2034 2037 4.502962 ACATTGAGAGTCTCTTAAGCAGC 58.497 43.478 20.64 0.00 0.00 5.25
2035 2038 4.020751 ACATTGAGAGTCTCTTAAGCAGCA 60.021 41.667 20.64 0.00 0.00 4.41
2036 2039 4.815533 TTGAGAGTCTCTTAAGCAGCAT 57.184 40.909 20.64 0.00 0.00 3.79
2037 2040 4.120792 TGAGAGTCTCTTAAGCAGCATG 57.879 45.455 20.64 0.00 40.87 4.06
2057 2060 0.509499 CAAGCATGCAAAAACTGGCG 59.491 50.000 21.98 0.00 0.00 5.69
2058 2061 0.600782 AAGCATGCAAAAACTGGCGG 60.601 50.000 21.98 0.00 0.00 6.13
2059 2062 1.300853 GCATGCAAAAACTGGCGGT 60.301 52.632 14.21 0.00 0.00 5.68
2060 2063 0.879839 GCATGCAAAAACTGGCGGTT 60.880 50.000 14.21 5.72 40.28 4.44
2061 2064 0.860533 CATGCAAAAACTGGCGGTTG 59.139 50.000 13.37 1.99 38.29 3.77
2062 2065 0.879839 ATGCAAAAACTGGCGGTTGC 60.880 50.000 13.37 13.40 45.19 4.17
2063 2066 1.520342 GCAAAAACTGGCGGTTGCA 60.520 52.632 13.37 0.00 44.53 4.08
2064 2067 0.879839 GCAAAAACTGGCGGTTGCAT 60.880 50.000 13.37 0.00 44.53 3.96
2065 2068 1.604185 GCAAAAACTGGCGGTTGCATA 60.604 47.619 13.37 0.00 44.53 3.14
2066 2069 2.748605 CAAAAACTGGCGGTTGCATAA 58.251 42.857 13.37 0.00 45.35 1.90
2067 2070 3.126831 CAAAAACTGGCGGTTGCATAAA 58.873 40.909 13.37 0.00 45.35 1.40
2068 2071 2.723124 AAACTGGCGGTTGCATAAAG 57.277 45.000 13.37 0.00 45.35 1.85
2069 2072 1.616159 AACTGGCGGTTGCATAAAGT 58.384 45.000 11.68 0.00 45.35 2.66
2070 2073 2.483014 ACTGGCGGTTGCATAAAGTA 57.517 45.000 0.00 0.00 45.35 2.24
2071 2074 2.785562 ACTGGCGGTTGCATAAAGTAA 58.214 42.857 0.00 0.00 45.35 2.24
2072 2075 2.486592 ACTGGCGGTTGCATAAAGTAAC 59.513 45.455 0.00 0.00 45.35 2.50
2073 2076 2.747446 CTGGCGGTTGCATAAAGTAACT 59.253 45.455 0.00 0.00 45.35 2.24
2074 2077 2.745281 TGGCGGTTGCATAAAGTAACTC 59.255 45.455 0.00 0.00 45.35 3.01
2077 2080 4.142469 GGCGGTTGCATAAAGTAACTCAAT 60.142 41.667 0.00 0.00 45.35 2.57
2083 2086 7.484959 GGTTGCATAAAGTAACTCAATGTAAGC 59.515 37.037 0.00 7.82 41.84 3.09
2164 2167 3.078196 TAGATTGGCGCGTGGGGA 61.078 61.111 8.43 0.00 0.00 4.81
2313 2326 2.816672 TGAAATCATGCAAACTACGCCA 59.183 40.909 0.00 0.00 0.00 5.69
2316 2329 2.697431 TCATGCAAACTACGCCAAAC 57.303 45.000 0.00 0.00 0.00 2.93
2317 2330 2.226330 TCATGCAAACTACGCCAAACT 58.774 42.857 0.00 0.00 0.00 2.66
2318 2331 3.403968 TCATGCAAACTACGCCAAACTA 58.596 40.909 0.00 0.00 0.00 2.24
2331 2364 2.652095 AAACTACGCCTAGCCGCCA 61.652 57.895 0.00 0.00 0.00 5.69
2523 2570 3.650409 GTCGCTGTCGAGGATGATT 57.350 52.632 0.00 0.00 46.46 2.57
2624 2671 0.627451 TAGTCCTCCTTCGCCCACTA 59.373 55.000 0.00 0.00 0.00 2.74
2713 2760 3.733960 GCTTCGGCCGGACCAAAC 61.734 66.667 27.83 3.30 39.03 2.93
2714 2761 2.281208 CTTCGGCCGGACCAAACA 60.281 61.111 27.83 0.00 39.03 2.83
2715 2762 2.281208 TTCGGCCGGACCAAACAG 60.281 61.111 27.83 0.00 39.03 3.16
2716 2763 2.725203 CTTCGGCCGGACCAAACAGA 62.725 60.000 27.83 0.00 39.03 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 2.677836 GCTGTCAATTAATCTCCACGCA 59.322 45.455 0.00 0.00 0.00 5.24
196 197 5.294799 TCAGTAAACACGCACATAAACTGTT 59.705 36.000 0.00 0.00 35.29 3.16
211 212 7.040617 CGGATAGTATCTAGCCTTCAGTAAACA 60.041 40.741 9.97 0.00 0.00 2.83
237 238 2.035442 GTCAAGCAGGTTCCCTCGC 61.035 63.158 0.00 0.00 0.00 5.03
243 244 1.021968 AAACCGTGTCAAGCAGGTTC 58.978 50.000 0.00 0.00 45.25 3.62
269 270 1.066215 TCCACACTGCTGACGCATTAT 60.066 47.619 0.00 0.00 46.74 1.28
346 347 3.033659 AGTACGGATCAGAGACCCATT 57.966 47.619 0.00 0.00 0.00 3.16
488 489 5.248020 TCCATATGCCAAAAATGTTCTTGGT 59.752 36.000 0.00 0.00 43.45 3.67
592 593 2.538449 ACGCACTCTTAACAGTGAAACG 59.462 45.455 14.31 10.46 45.92 3.60
642 643 2.440247 GCGCCCCCAGCAAATAGT 60.440 61.111 0.00 0.00 44.04 2.12
926 927 7.335627 TCTTCCCGTATTAATCAACAAGTCAT 58.664 34.615 0.00 0.00 0.00 3.06
987 988 6.153851 ACATGATTATCATATCCCGAACGGTA 59.846 38.462 7.44 0.00 34.28 4.02
1095 1096 5.119588 CCGCAACGAATTAAAGTAACTCTGA 59.880 40.000 0.00 0.00 0.00 3.27
1149 1150 4.405358 TCACATGCCATTTTCCCCTTAATC 59.595 41.667 0.00 0.00 0.00 1.75
1193 1194 0.994995 CAGCGGTGAGACTTTGATCG 59.005 55.000 9.50 0.00 0.00 3.69
1418 1420 3.541632 GGTCCTTCAGAGTGTTGTTTCA 58.458 45.455 0.00 0.00 0.00 2.69
1437 1439 0.740868 CGGACTGCACAATGATCGGT 60.741 55.000 0.00 0.00 0.00 4.69
1455 1457 1.062587 GCCAATGTTGTCGAGGAATCG 59.937 52.381 0.00 0.00 0.00 3.34
1468 1470 2.165998 GCCTTTGAGAGAAGCCAATGT 58.834 47.619 0.00 0.00 0.00 2.71
1564 1566 4.456535 TGTTCACGAGAAATTTTCTGGGA 58.543 39.130 20.73 14.42 40.87 4.37
1578 1580 5.543714 TCTGCTACCTTATTTTGTTCACGA 58.456 37.500 0.00 0.00 0.00 4.35
1592 1594 0.905357 AGCCAAACGATCTGCTACCT 59.095 50.000 0.00 0.00 30.97 3.08
1660 1662 5.674525 CAGTAGTGCCTCAATAAATGGAGA 58.325 41.667 0.00 0.00 32.87 3.71
1746 1749 7.649306 GCGAGACAAGGCATTTATTTTTCATAT 59.351 33.333 0.00 0.00 0.00 1.78
1747 1750 6.972328 GCGAGACAAGGCATTTATTTTTCATA 59.028 34.615 0.00 0.00 0.00 2.15
1748 1751 5.807011 GCGAGACAAGGCATTTATTTTTCAT 59.193 36.000 0.00 0.00 0.00 2.57
1749 1752 5.160641 GCGAGACAAGGCATTTATTTTTCA 58.839 37.500 0.00 0.00 0.00 2.69
1750 1753 5.060940 GTGCGAGACAAGGCATTTATTTTTC 59.939 40.000 0.00 0.00 41.83 2.29
1751 1754 4.923281 GTGCGAGACAAGGCATTTATTTTT 59.077 37.500 0.00 0.00 41.83 1.94
1752 1755 4.485163 GTGCGAGACAAGGCATTTATTTT 58.515 39.130 0.00 0.00 41.83 1.82
1753 1756 3.426159 CGTGCGAGACAAGGCATTTATTT 60.426 43.478 0.00 0.00 41.83 1.40
1754 1757 2.095853 CGTGCGAGACAAGGCATTTATT 59.904 45.455 0.00 0.00 41.83 1.40
1755 1758 1.665679 CGTGCGAGACAAGGCATTTAT 59.334 47.619 0.00 0.00 41.83 1.40
1756 1759 1.075542 CGTGCGAGACAAGGCATTTA 58.924 50.000 0.00 0.00 41.83 1.40
1757 1760 1.577328 CCGTGCGAGACAAGGCATTT 61.577 55.000 0.00 0.00 41.21 2.32
1758 1761 2.034879 CCGTGCGAGACAAGGCATT 61.035 57.895 0.00 0.00 41.21 3.56
1759 1762 2.434884 CCGTGCGAGACAAGGCAT 60.435 61.111 0.00 0.00 41.21 4.40
1760 1763 2.449031 ATTCCGTGCGAGACAAGGCA 62.449 55.000 0.00 0.00 46.55 4.75
1761 1764 1.696832 GATTCCGTGCGAGACAAGGC 61.697 60.000 0.00 0.00 46.55 4.35
1763 1766 0.716108 GTGATTCCGTGCGAGACAAG 59.284 55.000 0.00 0.00 0.00 3.16
1764 1767 0.317160 AGTGATTCCGTGCGAGACAA 59.683 50.000 0.00 0.00 0.00 3.18
1765 1768 1.170442 TAGTGATTCCGTGCGAGACA 58.830 50.000 0.00 0.00 0.00 3.41
1766 1769 1.918609 GTTAGTGATTCCGTGCGAGAC 59.081 52.381 0.00 0.00 0.00 3.36
1767 1770 1.466866 CGTTAGTGATTCCGTGCGAGA 60.467 52.381 0.00 0.00 0.00 4.04
1768 1771 0.914551 CGTTAGTGATTCCGTGCGAG 59.085 55.000 0.00 0.00 0.00 5.03
1769 1772 0.241749 ACGTTAGTGATTCCGTGCGA 59.758 50.000 0.00 0.00 31.43 5.10
1770 1773 2.733127 ACGTTAGTGATTCCGTGCG 58.267 52.632 0.00 0.00 31.43 5.34
1781 1784 2.941210 CAACCCATGCCACGTTAGT 58.059 52.632 0.00 0.00 0.00 2.24
1796 1799 1.305219 TGTGCATCTAAGCGGGCAAC 61.305 55.000 0.00 0.00 38.10 4.17
1797 1800 0.394216 ATGTGCATCTAAGCGGGCAA 60.394 50.000 0.00 0.00 38.10 4.52
1798 1801 0.467804 TATGTGCATCTAAGCGGGCA 59.532 50.000 0.00 0.00 37.31 5.36
1799 1802 0.868406 GTATGTGCATCTAAGCGGGC 59.132 55.000 0.00 0.00 37.31 6.13
1800 1803 2.138320 CTGTATGTGCATCTAAGCGGG 58.862 52.381 0.00 0.00 37.31 6.13
1801 1804 3.055591 CTCTGTATGTGCATCTAAGCGG 58.944 50.000 0.00 0.00 37.31 5.52
1802 1805 3.488678 CACTCTGTATGTGCATCTAAGCG 59.511 47.826 0.00 0.00 37.31 4.68
1803 1806 3.806521 CCACTCTGTATGTGCATCTAAGC 59.193 47.826 0.00 0.00 34.38 3.09
1804 1807 5.016051 ACCACTCTGTATGTGCATCTAAG 57.984 43.478 0.00 0.00 34.38 2.18
1805 1808 6.538945 TTACCACTCTGTATGTGCATCTAA 57.461 37.500 0.00 0.00 34.38 2.10
1806 1809 6.154534 ACTTTACCACTCTGTATGTGCATCTA 59.845 38.462 0.00 0.00 34.38 1.98
1807 1810 5.046304 ACTTTACCACTCTGTATGTGCATCT 60.046 40.000 0.00 0.00 34.38 2.90
1808 1811 5.178797 ACTTTACCACTCTGTATGTGCATC 58.821 41.667 0.00 0.00 34.38 3.91
1809 1812 5.165961 ACTTTACCACTCTGTATGTGCAT 57.834 39.130 0.00 0.00 34.38 3.96
1810 1813 4.617253 ACTTTACCACTCTGTATGTGCA 57.383 40.909 0.00 0.00 34.38 4.57
1811 1814 5.238583 AGAACTTTACCACTCTGTATGTGC 58.761 41.667 0.00 0.00 34.38 4.57
1812 1815 6.929049 TGAAGAACTTTACCACTCTGTATGTG 59.071 38.462 0.00 0.00 35.39 3.21
1813 1816 7.062749 TGAAGAACTTTACCACTCTGTATGT 57.937 36.000 0.00 0.00 0.00 2.29
1814 1817 7.819415 TGATGAAGAACTTTACCACTCTGTATG 59.181 37.037 0.00 0.00 0.00 2.39
1815 1818 7.907389 TGATGAAGAACTTTACCACTCTGTAT 58.093 34.615 0.00 0.00 0.00 2.29
1816 1819 7.297936 TGATGAAGAACTTTACCACTCTGTA 57.702 36.000 0.00 0.00 0.00 2.74
1817 1820 6.174720 TGATGAAGAACTTTACCACTCTGT 57.825 37.500 0.00 0.00 0.00 3.41
1818 1821 7.102346 AGATGATGAAGAACTTTACCACTCTG 58.898 38.462 0.00 0.00 0.00 3.35
1819 1822 7.251321 AGATGATGAAGAACTTTACCACTCT 57.749 36.000 0.00 0.00 0.00 3.24
1820 1823 9.436957 TTTAGATGATGAAGAACTTTACCACTC 57.563 33.333 0.00 0.00 0.00 3.51
1821 1824 9.965902 ATTTAGATGATGAAGAACTTTACCACT 57.034 29.630 0.00 0.00 0.00 4.00
1834 1837 9.830975 TCGTTGGATCTTAATTTAGATGATGAA 57.169 29.630 11.53 0.00 35.06 2.57
1835 1838 9.830975 TTCGTTGGATCTTAATTTAGATGATGA 57.169 29.630 11.53 5.98 35.06 2.92
1846 1849 8.398665 GCATAGTCTTTTTCGTTGGATCTTAAT 58.601 33.333 0.00 0.00 0.00 1.40
1847 1850 7.389330 TGCATAGTCTTTTTCGTTGGATCTTAA 59.611 33.333 0.00 0.00 0.00 1.85
1848 1851 6.876789 TGCATAGTCTTTTTCGTTGGATCTTA 59.123 34.615 0.00 0.00 0.00 2.10
1849 1852 5.705441 TGCATAGTCTTTTTCGTTGGATCTT 59.295 36.000 0.00 0.00 0.00 2.40
1850 1853 5.122396 GTGCATAGTCTTTTTCGTTGGATCT 59.878 40.000 0.00 0.00 0.00 2.75
1851 1854 5.106712 TGTGCATAGTCTTTTTCGTTGGATC 60.107 40.000 0.00 0.00 0.00 3.36
1852 1855 4.759693 TGTGCATAGTCTTTTTCGTTGGAT 59.240 37.500 0.00 0.00 0.00 3.41
1853 1856 4.024387 GTGTGCATAGTCTTTTTCGTTGGA 60.024 41.667 0.00 0.00 0.00 3.53
1854 1857 4.219033 GTGTGCATAGTCTTTTTCGTTGG 58.781 43.478 0.00 0.00 0.00 3.77
1855 1858 3.900116 CGTGTGCATAGTCTTTTTCGTTG 59.100 43.478 0.00 0.00 0.00 4.10
1856 1859 3.606153 GCGTGTGCATAGTCTTTTTCGTT 60.606 43.478 0.00 0.00 42.15 3.85
1857 1860 2.096417 GCGTGTGCATAGTCTTTTTCGT 60.096 45.455 0.00 0.00 42.15 3.85
1858 1861 2.495939 GCGTGTGCATAGTCTTTTTCG 58.504 47.619 0.00 0.00 42.15 3.46
1859 1862 2.096417 ACGCGTGTGCATAGTCTTTTTC 60.096 45.455 12.93 0.00 42.97 2.29
1860 1863 1.871039 ACGCGTGTGCATAGTCTTTTT 59.129 42.857 12.93 0.00 42.97 1.94
1861 1864 1.194547 CACGCGTGTGCATAGTCTTTT 59.805 47.619 30.50 0.00 42.97 2.27
1862 1865 0.790207 CACGCGTGTGCATAGTCTTT 59.210 50.000 30.50 0.00 42.97 2.52
1863 1866 1.014044 CCACGCGTGTGCATAGTCTT 61.014 55.000 34.81 0.00 45.04 3.01
1864 1867 1.446099 CCACGCGTGTGCATAGTCT 60.446 57.895 34.81 0.00 45.04 3.24
1865 1868 3.081133 CCACGCGTGTGCATAGTC 58.919 61.111 34.81 0.00 45.04 2.59
1866 1869 3.118454 GCCACGCGTGTGCATAGT 61.118 61.111 33.23 1.23 45.04 2.12
1867 1870 1.151172 TATGCCACGCGTGTGCATAG 61.151 55.000 40.43 27.84 45.04 2.23
1868 1871 0.741221 TTATGCCACGCGTGTGCATA 60.741 50.000 40.43 40.43 45.04 3.14
1869 1872 1.375853 ATTATGCCACGCGTGTGCAT 61.376 50.000 41.84 41.84 45.04 3.96
1870 1873 1.976478 GATTATGCCACGCGTGTGCA 61.976 55.000 38.38 38.38 45.04 4.57
1871 1874 1.297598 GATTATGCCACGCGTGTGC 60.298 57.895 34.81 33.35 45.04 4.57
1872 1875 1.257936 GTAGATTATGCCACGCGTGTG 59.742 52.381 34.81 26.49 46.00 3.82
1873 1876 1.136305 AGTAGATTATGCCACGCGTGT 59.864 47.619 34.81 20.95 0.00 4.49
1874 1877 1.522676 CAGTAGATTATGCCACGCGTG 59.477 52.381 31.77 31.77 0.00 5.34
1875 1878 1.136305 ACAGTAGATTATGCCACGCGT 59.864 47.619 5.58 5.58 0.00 6.01
1876 1879 1.852942 ACAGTAGATTATGCCACGCG 58.147 50.000 3.53 3.53 0.00 6.01
1877 1880 8.697846 TTTATATACAGTAGATTATGCCACGC 57.302 34.615 0.00 0.00 0.00 5.34
1888 1891 9.186837 GGGTGCTAGCTATTTATATACAGTAGA 57.813 37.037 17.23 0.00 0.00 2.59
1889 1892 8.967918 TGGGTGCTAGCTATTTATATACAGTAG 58.032 37.037 17.23 0.00 0.00 2.57
1890 1893 8.746530 GTGGGTGCTAGCTATTTATATACAGTA 58.253 37.037 17.23 0.00 0.00 2.74
1891 1894 7.455008 AGTGGGTGCTAGCTATTTATATACAGT 59.545 37.037 17.23 1.29 0.00 3.55
1892 1895 7.841956 AGTGGGTGCTAGCTATTTATATACAG 58.158 38.462 17.23 0.00 0.00 2.74
1893 1896 7.792364 AGTGGGTGCTAGCTATTTATATACA 57.208 36.000 17.23 0.00 0.00 2.29
1894 1897 8.196103 GGTAGTGGGTGCTAGCTATTTATATAC 58.804 40.741 17.23 9.12 36.74 1.47
1895 1898 7.897030 TGGTAGTGGGTGCTAGCTATTTATATA 59.103 37.037 17.23 0.00 39.44 0.86
1896 1899 6.729100 TGGTAGTGGGTGCTAGCTATTTATAT 59.271 38.462 17.23 0.00 39.44 0.86
1897 1900 6.079336 TGGTAGTGGGTGCTAGCTATTTATA 58.921 40.000 17.23 0.00 39.44 0.98
1898 1901 4.905456 TGGTAGTGGGTGCTAGCTATTTAT 59.095 41.667 17.23 0.85 39.44 1.40
1899 1902 4.291792 TGGTAGTGGGTGCTAGCTATTTA 58.708 43.478 17.23 0.00 39.44 1.40
1900 1903 3.112263 TGGTAGTGGGTGCTAGCTATTT 58.888 45.455 17.23 0.00 39.44 1.40
1901 1904 2.759355 TGGTAGTGGGTGCTAGCTATT 58.241 47.619 17.23 0.00 39.44 1.73
1902 1905 2.471815 TGGTAGTGGGTGCTAGCTAT 57.528 50.000 17.23 0.00 39.44 2.97
1903 1906 2.471815 ATGGTAGTGGGTGCTAGCTA 57.528 50.000 17.23 0.00 39.44 3.32
1904 1907 2.471815 TATGGTAGTGGGTGCTAGCT 57.528 50.000 17.23 0.00 39.44 3.32
1905 1908 3.553828 TTTATGGTAGTGGGTGCTAGC 57.446 47.619 8.10 8.10 39.23 3.42
1906 1909 5.930135 AGAATTTATGGTAGTGGGTGCTAG 58.070 41.667 0.00 0.00 0.00 3.42
1907 1910 5.665812 AGAGAATTTATGGTAGTGGGTGCTA 59.334 40.000 0.00 0.00 0.00 3.49
1908 1911 4.475016 AGAGAATTTATGGTAGTGGGTGCT 59.525 41.667 0.00 0.00 0.00 4.40
1909 1912 4.576463 CAGAGAATTTATGGTAGTGGGTGC 59.424 45.833 0.00 0.00 0.00 5.01
1910 1913 5.745227 ACAGAGAATTTATGGTAGTGGGTG 58.255 41.667 0.00 0.00 0.00 4.61
1911 1914 5.487488 TGACAGAGAATTTATGGTAGTGGGT 59.513 40.000 0.00 0.00 0.00 4.51
1912 1915 5.989477 TGACAGAGAATTTATGGTAGTGGG 58.011 41.667 0.00 0.00 0.00 4.61
1913 1916 8.511604 AAATGACAGAGAATTTATGGTAGTGG 57.488 34.615 0.00 0.00 0.00 4.00
1914 1917 9.994432 GAAAATGACAGAGAATTTATGGTAGTG 57.006 33.333 0.00 0.00 0.00 2.74
1915 1918 9.965902 AGAAAATGACAGAGAATTTATGGTAGT 57.034 29.630 0.00 0.00 0.00 2.73
1918 1921 8.031277 GCAAGAAAATGACAGAGAATTTATGGT 58.969 33.333 0.00 0.00 0.00 3.55
1919 1922 7.219535 CGCAAGAAAATGACAGAGAATTTATGG 59.780 37.037 0.00 0.00 43.02 2.74
1920 1923 7.253552 GCGCAAGAAAATGACAGAGAATTTATG 60.254 37.037 0.30 0.00 43.02 1.90
1921 1924 6.749118 GCGCAAGAAAATGACAGAGAATTTAT 59.251 34.615 0.30 0.00 43.02 1.40
1922 1925 6.086222 GCGCAAGAAAATGACAGAGAATTTA 58.914 36.000 0.30 0.00 43.02 1.40
1923 1926 4.919754 GCGCAAGAAAATGACAGAGAATTT 59.080 37.500 0.30 0.00 43.02 1.82
1924 1927 4.479619 GCGCAAGAAAATGACAGAGAATT 58.520 39.130 0.30 0.00 43.02 2.17
1925 1928 3.119708 GGCGCAAGAAAATGACAGAGAAT 60.120 43.478 10.83 0.00 43.02 2.40
1926 1929 2.226437 GGCGCAAGAAAATGACAGAGAA 59.774 45.455 10.83 0.00 43.02 2.87
1927 1930 1.806542 GGCGCAAGAAAATGACAGAGA 59.193 47.619 10.83 0.00 43.02 3.10
1928 1931 1.536766 TGGCGCAAGAAAATGACAGAG 59.463 47.619 10.83 0.00 43.02 3.35
1929 1932 1.266718 GTGGCGCAAGAAAATGACAGA 59.733 47.619 10.83 0.00 43.02 3.41
1930 1933 1.267806 AGTGGCGCAAGAAAATGACAG 59.732 47.619 10.83 0.00 43.02 3.51
1931 1934 1.317613 AGTGGCGCAAGAAAATGACA 58.682 45.000 10.83 0.00 43.02 3.58
1932 1935 2.287547 TGAAGTGGCGCAAGAAAATGAC 60.288 45.455 10.83 0.00 43.02 3.06
1933 1936 1.952990 TGAAGTGGCGCAAGAAAATGA 59.047 42.857 10.83 0.00 43.02 2.57
1934 1937 2.053627 GTGAAGTGGCGCAAGAAAATG 58.946 47.619 10.83 0.00 43.02 2.32
1935 1938 1.000274 GGTGAAGTGGCGCAAGAAAAT 60.000 47.619 10.83 0.00 43.02 1.82
1936 1939 0.383949 GGTGAAGTGGCGCAAGAAAA 59.616 50.000 10.83 0.00 43.02 2.29
1937 1940 0.749818 TGGTGAAGTGGCGCAAGAAA 60.750 50.000 10.83 0.00 43.02 2.52
1938 1941 0.749818 TTGGTGAAGTGGCGCAAGAA 60.750 50.000 10.83 0.00 43.02 2.52
1939 1942 0.749818 TTTGGTGAAGTGGCGCAAGA 60.750 50.000 10.83 0.00 43.02 3.02
1940 1943 0.102120 TTTTGGTGAAGTGGCGCAAG 59.898 50.000 10.83 0.00 43.44 4.01
1941 1944 0.749649 ATTTTGGTGAAGTGGCGCAA 59.250 45.000 10.83 0.00 0.00 4.85
1942 1945 0.749649 AATTTTGGTGAAGTGGCGCA 59.250 45.000 10.83 0.00 0.00 6.09
1943 1946 2.715737 TAATTTTGGTGAAGTGGCGC 57.284 45.000 0.00 0.00 0.00 6.53
1944 1947 4.173036 ACATAATTTTGGTGAAGTGGCG 57.827 40.909 0.89 0.00 0.00 5.69
1945 1948 5.102313 GCTACATAATTTTGGTGAAGTGGC 58.898 41.667 0.89 0.00 0.00 5.01
1946 1949 5.184864 TGGCTACATAATTTTGGTGAAGTGG 59.815 40.000 0.89 0.00 0.00 4.00
1947 1950 6.266168 TGGCTACATAATTTTGGTGAAGTG 57.734 37.500 0.89 0.00 0.00 3.16
1948 1951 7.322664 CAATGGCTACATAATTTTGGTGAAGT 58.677 34.615 0.89 0.00 35.94 3.01
1949 1952 6.757947 CCAATGGCTACATAATTTTGGTGAAG 59.242 38.462 0.89 0.00 35.94 3.02
1950 1953 6.438741 TCCAATGGCTACATAATTTTGGTGAA 59.561 34.615 0.00 0.00 35.94 3.18
1951 1954 5.954752 TCCAATGGCTACATAATTTTGGTGA 59.045 36.000 0.00 0.00 35.94 4.02
1952 1955 6.219417 TCCAATGGCTACATAATTTTGGTG 57.781 37.500 0.00 0.00 35.94 4.17
1953 1956 6.865834 TTCCAATGGCTACATAATTTTGGT 57.134 33.333 0.00 0.00 35.94 3.67
1954 1957 9.829507 TTATTTCCAATGGCTACATAATTTTGG 57.170 29.630 0.00 0.00 35.94 3.28
1961 1964 9.194972 TGATTTGTTATTTCCAATGGCTACATA 57.805 29.630 0.00 0.00 35.94 2.29
1962 1965 8.076910 TGATTTGTTATTTCCAATGGCTACAT 57.923 30.769 0.00 0.00 39.54 2.29
1963 1966 7.178274 ACTGATTTGTTATTTCCAATGGCTACA 59.822 33.333 0.00 0.00 0.00 2.74
1964 1967 7.547227 ACTGATTTGTTATTTCCAATGGCTAC 58.453 34.615 0.00 0.00 0.00 3.58
1965 1968 7.147915 GGACTGATTTGTTATTTCCAATGGCTA 60.148 37.037 0.00 0.00 0.00 3.93
1966 1969 6.351286 GGACTGATTTGTTATTTCCAATGGCT 60.351 38.462 0.00 0.00 0.00 4.75
1967 1970 5.812127 GGACTGATTTGTTATTTCCAATGGC 59.188 40.000 0.00 0.00 0.00 4.40
1968 1971 6.813152 GTGGACTGATTTGTTATTTCCAATGG 59.187 38.462 0.00 0.00 33.53 3.16
1969 1972 7.377398 TGTGGACTGATTTGTTATTTCCAATG 58.623 34.615 0.00 0.00 33.53 2.82
1970 1973 7.537596 TGTGGACTGATTTGTTATTTCCAAT 57.462 32.000 0.00 0.00 33.53 3.16
1971 1974 6.968263 TGTGGACTGATTTGTTATTTCCAA 57.032 33.333 0.00 0.00 33.53 3.53
1972 1975 6.775142 TCTTGTGGACTGATTTGTTATTTCCA 59.225 34.615 0.00 0.00 0.00 3.53
1973 1976 7.214467 TCTTGTGGACTGATTTGTTATTTCC 57.786 36.000 0.00 0.00 0.00 3.13
1974 1977 7.595130 GGTTCTTGTGGACTGATTTGTTATTTC 59.405 37.037 0.00 0.00 0.00 2.17
1975 1978 7.069331 TGGTTCTTGTGGACTGATTTGTTATTT 59.931 33.333 0.00 0.00 0.00 1.40
1976 1979 6.549364 TGGTTCTTGTGGACTGATTTGTTATT 59.451 34.615 0.00 0.00 0.00 1.40
1977 1980 6.068010 TGGTTCTTGTGGACTGATTTGTTAT 58.932 36.000 0.00 0.00 0.00 1.89
1978 1981 5.441500 TGGTTCTTGTGGACTGATTTGTTA 58.558 37.500 0.00 0.00 0.00 2.41
1979 1982 4.277476 TGGTTCTTGTGGACTGATTTGTT 58.723 39.130 0.00 0.00 0.00 2.83
1980 1983 3.897239 TGGTTCTTGTGGACTGATTTGT 58.103 40.909 0.00 0.00 0.00 2.83
1981 1984 4.082571 GGATGGTTCTTGTGGACTGATTTG 60.083 45.833 0.00 0.00 0.00 2.32
1982 1985 4.082125 GGATGGTTCTTGTGGACTGATTT 58.918 43.478 0.00 0.00 0.00 2.17
1983 1986 3.690460 GGATGGTTCTTGTGGACTGATT 58.310 45.455 0.00 0.00 0.00 2.57
1984 1987 2.355108 CGGATGGTTCTTGTGGACTGAT 60.355 50.000 0.00 0.00 0.00 2.90
1985 1988 1.001974 CGGATGGTTCTTGTGGACTGA 59.998 52.381 0.00 0.00 0.00 3.41
1986 1989 1.270839 ACGGATGGTTCTTGTGGACTG 60.271 52.381 0.00 0.00 0.00 3.51
1987 1990 1.056660 ACGGATGGTTCTTGTGGACT 58.943 50.000 0.00 0.00 0.00 3.85
1988 1991 1.892209 AACGGATGGTTCTTGTGGAC 58.108 50.000 0.00 0.00 31.79 4.02
1997 2000 5.556915 TCTCAATGTTTAGAACGGATGGTT 58.443 37.500 0.00 0.00 42.96 3.67
1998 2001 5.160607 TCTCAATGTTTAGAACGGATGGT 57.839 39.130 0.00 0.00 0.00 3.55
1999 2002 5.178797 ACTCTCAATGTTTAGAACGGATGG 58.821 41.667 0.00 0.00 0.00 3.51
2000 2003 6.102663 AGACTCTCAATGTTTAGAACGGATG 58.897 40.000 0.00 0.00 0.00 3.51
2001 2004 6.153680 AGAGACTCTCAATGTTTAGAACGGAT 59.846 38.462 8.80 0.00 32.06 4.18
2002 2005 5.477291 AGAGACTCTCAATGTTTAGAACGGA 59.523 40.000 8.80 0.00 32.06 4.69
2003 2006 5.715070 AGAGACTCTCAATGTTTAGAACGG 58.285 41.667 8.80 0.00 32.06 4.44
2004 2007 8.744008 TTAAGAGACTCTCAATGTTTAGAACG 57.256 34.615 5.20 0.00 32.06 3.95
2005 2008 8.652463 GCTTAAGAGACTCTCAATGTTTAGAAC 58.348 37.037 6.67 0.00 32.06 3.01
2006 2009 8.367911 TGCTTAAGAGACTCTCAATGTTTAGAA 58.632 33.333 6.67 0.00 32.06 2.10
2007 2010 7.896811 TGCTTAAGAGACTCTCAATGTTTAGA 58.103 34.615 6.67 0.00 32.06 2.10
2008 2011 7.201513 GCTGCTTAAGAGACTCTCAATGTTTAG 60.202 40.741 6.67 0.00 32.06 1.85
2009 2012 6.591834 GCTGCTTAAGAGACTCTCAATGTTTA 59.408 38.462 6.67 0.00 32.06 2.01
2010 2013 5.411053 GCTGCTTAAGAGACTCTCAATGTTT 59.589 40.000 6.67 0.00 32.06 2.83
2011 2014 4.934602 GCTGCTTAAGAGACTCTCAATGTT 59.065 41.667 6.67 0.00 32.06 2.71
2012 2015 4.020751 TGCTGCTTAAGAGACTCTCAATGT 60.021 41.667 6.67 0.00 32.06 2.71
2013 2016 4.502016 TGCTGCTTAAGAGACTCTCAATG 58.498 43.478 6.67 1.43 32.06 2.82
2014 2017 4.815533 TGCTGCTTAAGAGACTCTCAAT 57.184 40.909 6.67 0.00 32.06 2.57
2015 2018 4.502016 CATGCTGCTTAAGAGACTCTCAA 58.498 43.478 6.67 0.00 32.06 3.02
2016 2019 3.678252 GCATGCTGCTTAAGAGACTCTCA 60.678 47.826 11.37 0.00 40.96 3.27
2017 2020 2.865551 GCATGCTGCTTAAGAGACTCTC 59.134 50.000 11.37 0.00 40.96 3.20
2018 2021 2.235650 TGCATGCTGCTTAAGAGACTCT 59.764 45.455 20.33 0.00 45.31 3.24
2019 2022 2.625737 TGCATGCTGCTTAAGAGACTC 58.374 47.619 20.33 0.00 45.31 3.36
2020 2023 2.775911 TGCATGCTGCTTAAGAGACT 57.224 45.000 20.33 0.00 45.31 3.24
2021 2024 2.477525 GCTTGCATGCTGCTTAAGAGAC 60.478 50.000 20.33 0.00 45.31 3.36
2022 2025 1.741706 GCTTGCATGCTGCTTAAGAGA 59.258 47.619 20.33 0.00 45.31 3.10
2023 2026 1.471287 TGCTTGCATGCTGCTTAAGAG 59.529 47.619 27.12 11.78 45.31 2.85
2024 2027 1.536940 TGCTTGCATGCTGCTTAAGA 58.463 45.000 27.12 11.55 45.31 2.10
2025 2028 2.193447 CATGCTTGCATGCTGCTTAAG 58.807 47.619 27.12 19.40 45.31 1.85
2026 2029 2.287393 CATGCTTGCATGCTGCTTAA 57.713 45.000 27.12 14.30 45.31 1.85
2028 2031 4.910956 CATGCTTGCATGCTGCTT 57.089 50.000 27.12 21.22 45.31 3.91
2038 2041 0.509499 CGCCAGTTTTTGCATGCTTG 59.491 50.000 20.33 7.45 0.00 4.01
2039 2042 0.600782 CCGCCAGTTTTTGCATGCTT 60.601 50.000 20.33 0.00 0.00 3.91
2040 2043 1.005867 CCGCCAGTTTTTGCATGCT 60.006 52.632 20.33 0.00 0.00 3.79
2041 2044 0.879839 AACCGCCAGTTTTTGCATGC 60.880 50.000 11.82 11.82 33.89 4.06
2042 2045 0.860533 CAACCGCCAGTTTTTGCATG 59.139 50.000 0.00 0.00 36.18 4.06
2043 2046 0.879839 GCAACCGCCAGTTTTTGCAT 60.880 50.000 0.40 0.00 43.16 3.96
2044 2047 1.520342 GCAACCGCCAGTTTTTGCA 60.520 52.632 0.40 0.00 43.16 4.08
2045 2048 0.879839 ATGCAACCGCCAGTTTTTGC 60.880 50.000 0.00 0.00 43.80 3.68
2046 2049 2.430546 TATGCAACCGCCAGTTTTTG 57.569 45.000 0.00 0.00 36.18 2.44
2047 2050 3.181470 ACTTTATGCAACCGCCAGTTTTT 60.181 39.130 0.00 0.00 36.18 1.94
2048 2051 2.364002 ACTTTATGCAACCGCCAGTTTT 59.636 40.909 0.00 0.00 36.18 2.43
2049 2052 1.960689 ACTTTATGCAACCGCCAGTTT 59.039 42.857 0.00 0.00 36.18 2.66
2050 2053 1.616159 ACTTTATGCAACCGCCAGTT 58.384 45.000 0.00 0.00 40.16 3.16
2051 2054 2.483014 TACTTTATGCAACCGCCAGT 57.517 45.000 0.00 0.00 37.32 4.00
2052 2055 2.747446 AGTTACTTTATGCAACCGCCAG 59.253 45.455 0.00 0.00 37.32 4.85
2053 2056 2.745281 GAGTTACTTTATGCAACCGCCA 59.255 45.455 0.00 0.00 37.32 5.69
2054 2057 2.745281 TGAGTTACTTTATGCAACCGCC 59.255 45.455 0.00 0.00 37.32 6.13
2055 2058 4.413495 TTGAGTTACTTTATGCAACCGC 57.587 40.909 0.00 0.00 39.24 5.68
2056 2059 5.938322 ACATTGAGTTACTTTATGCAACCG 58.062 37.500 0.00 0.00 0.00 4.44
2057 2060 7.484959 GCTTACATTGAGTTACTTTATGCAACC 59.515 37.037 0.00 0.00 0.00 3.77
2058 2061 7.216317 CGCTTACATTGAGTTACTTTATGCAAC 59.784 37.037 0.00 0.00 0.00 4.17
2059 2062 7.240674 CGCTTACATTGAGTTACTTTATGCAA 58.759 34.615 0.00 0.00 0.00 4.08
2060 2063 6.674519 GCGCTTACATTGAGTTACTTTATGCA 60.675 38.462 0.00 0.00 0.00 3.96
2061 2064 5.677178 GCGCTTACATTGAGTTACTTTATGC 59.323 40.000 0.00 0.00 0.00 3.14
2062 2065 6.771076 TGCGCTTACATTGAGTTACTTTATG 58.229 36.000 9.73 6.24 0.00 1.90
2063 2066 6.978343 TGCGCTTACATTGAGTTACTTTAT 57.022 33.333 9.73 0.00 0.00 1.40
2064 2067 6.816640 AGATGCGCTTACATTGAGTTACTTTA 59.183 34.615 9.73 0.00 0.00 1.85
2065 2068 5.643777 AGATGCGCTTACATTGAGTTACTTT 59.356 36.000 9.73 0.00 0.00 2.66
2066 2069 5.178797 AGATGCGCTTACATTGAGTTACTT 58.821 37.500 9.73 0.00 0.00 2.24
2067 2070 4.759782 AGATGCGCTTACATTGAGTTACT 58.240 39.130 9.73 0.00 0.00 2.24
2068 2071 4.025647 GGAGATGCGCTTACATTGAGTTAC 60.026 45.833 9.73 0.00 0.00 2.50
2069 2072 4.119862 GGAGATGCGCTTACATTGAGTTA 58.880 43.478 9.73 0.00 0.00 2.24
2070 2073 2.939103 GGAGATGCGCTTACATTGAGTT 59.061 45.455 9.73 0.00 0.00 3.01
2071 2074 2.093500 TGGAGATGCGCTTACATTGAGT 60.093 45.455 9.73 0.00 0.00 3.41
2072 2075 2.543012 CTGGAGATGCGCTTACATTGAG 59.457 50.000 9.73 0.00 0.00 3.02
2073 2076 2.554142 CTGGAGATGCGCTTACATTGA 58.446 47.619 9.73 0.00 0.00 2.57
2074 2077 1.003116 GCTGGAGATGCGCTTACATTG 60.003 52.381 9.73 0.00 0.00 2.82
2077 2080 1.153369 GGCTGGAGATGCGCTTACA 60.153 57.895 9.73 0.00 0.00 2.41
2083 2086 3.257561 CGAACGGCTGGAGATGCG 61.258 66.667 0.00 0.00 0.00 4.73
2297 2310 2.226330 AGTTTGGCGTAGTTTGCATGA 58.774 42.857 0.00 0.00 0.00 3.07
2313 2326 2.186125 GGCGGCTAGGCGTAGTTT 59.814 61.111 35.06 0.00 35.04 2.66
2343 2376 4.396854 GGCATGTAGACGACGGAC 57.603 61.111 0.00 0.00 0.00 4.79
2624 2671 1.078285 GACGACGAGTCCTCCCTCT 60.078 63.158 0.00 0.00 43.95 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.