Multiple sequence alignment - TraesCS7D01G442700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G442700 chr7D 100.000 2918 0 0 1 2918 562150186 562147269 0.000000e+00 5389.0
1 TraesCS7D01G442700 chr7D 89.256 726 65 9 1345 2062 562257361 562256641 0.000000e+00 896.0
2 TraesCS7D01G442700 chr7A 100.000 879 0 0 1010 1888 647307230 647306352 0.000000e+00 1624.0
3 TraesCS7D01G442700 chr7A 91.598 964 60 12 493 1447 648043312 648042361 0.000000e+00 1312.0
4 TraesCS7D01G442700 chr7A 90.649 909 68 9 788 1684 647917670 647916767 0.000000e+00 1192.0
5 TraesCS7D01G442700 chr7A 94.927 749 30 4 1535 2276 647306341 647305594 0.000000e+00 1166.0
6 TraesCS7D01G442700 chr7A 92.786 707 51 0 1229 1935 647917450 647916744 0.000000e+00 1024.0
7 TraesCS7D01G442700 chr7A 89.845 709 41 12 674 1373 647307927 647307241 0.000000e+00 881.0
8 TraesCS7D01G442700 chr7A 98.879 446 5 0 1466 1911 647307230 647306785 0.000000e+00 797.0
9 TraesCS7D01G442700 chr7A 99.769 433 1 0 1000 1432 647306784 647306352 0.000000e+00 795.0
10 TraesCS7D01G442700 chr7A 90.051 583 53 3 948 1530 647862905 647862328 0.000000e+00 750.0
11 TraesCS7D01G442700 chr7A 93.367 392 13 6 2519 2907 647305410 647305029 4.220000e-158 568.0
12 TraesCS7D01G442700 chr7A 86.616 523 43 13 169 675 647308721 647308210 1.180000e-153 553.0
13 TraesCS7D01G442700 chr7A 85.821 134 8 6 1 126 647308968 647308838 6.560000e-27 132.0
14 TraesCS7D01G442700 chr7A 95.238 63 3 0 9 71 647935737 647935675 1.850000e-17 100.0
15 TraesCS7D01G442700 chr7A 97.826 46 1 0 84 129 647935637 647935592 2.410000e-11 80.5
16 TraesCS7D01G442700 chr7A 100.000 42 0 0 2446 2487 647305536 647305495 8.670000e-11 78.7
17 TraesCS7D01G442700 chr7A 95.455 44 2 0 2334 2377 647305578 647305535 1.450000e-08 71.3
18 TraesCS7D01G442700 chr6D 88.985 926 102 0 998 1923 75372311 75373236 0.000000e+00 1146.0
19 TraesCS7D01G442700 chr6D 82.443 917 156 5 1000 1913 351986871 351987785 0.000000e+00 797.0
20 TraesCS7D01G442700 chrUn 92.034 703 55 1 982 1684 20705486 20706187 0.000000e+00 987.0
21 TraesCS7D01G442700 chrUn 89.855 759 68 5 1229 1985 20705504 20706255 0.000000e+00 966.0
22 TraesCS7D01G442700 chr6B 90.145 690 68 0 994 1683 171728467 171727778 0.000000e+00 898.0
23 TraesCS7D01G442700 chr7B 92.281 570 38 5 1628 2195 611730207 611729642 0.000000e+00 804.0
24 TraesCS7D01G442700 chr7B 88.068 176 12 6 286 460 611731685 611731518 1.770000e-47 200.0
25 TraesCS7D01G442700 chr7B 87.770 139 15 2 2550 2687 611729291 611729154 8.370000e-36 161.0
26 TraesCS7D01G442700 chr7B 82.418 182 16 7 9 174 611743462 611743281 8.430000e-31 145.0
27 TraesCS7D01G442700 chr7B 91.000 100 9 0 75 174 612257393 612257294 5.070000e-28 135.0
28 TraesCS7D01G442700 chr7B 94.366 71 4 0 1 71 611731992 611731922 3.070000e-20 110.0
29 TraesCS7D01G442700 chr7B 90.909 66 4 2 2193 2258 611729617 611729554 1.440000e-13 87.9
30 TraesCS7D01G442700 chr7B 86.301 73 10 0 1 73 612257490 612257418 2.410000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G442700 chr7D 562147269 562150186 2917 True 5389.00 5389 100.0000 1 2918 1 chr7D.!!$R1 2917
1 TraesCS7D01G442700 chr7D 562256641 562257361 720 True 896.00 896 89.2560 1345 2062 1 chr7D.!!$R2 717
2 TraesCS7D01G442700 chr7A 648042361 648043312 951 True 1312.00 1312 91.5980 493 1447 1 chr7A.!!$R2 954
3 TraesCS7D01G442700 chr7A 647916744 647917670 926 True 1108.00 1192 91.7175 788 1935 2 chr7A.!!$R4 1147
4 TraesCS7D01G442700 chr7A 647862328 647862905 577 True 750.00 750 90.0510 948 1530 1 chr7A.!!$R1 582
5 TraesCS7D01G442700 chr7A 647305029 647308968 3939 True 666.60 1624 94.4679 1 2907 10 chr7A.!!$R3 2906
6 TraesCS7D01G442700 chr6D 75372311 75373236 925 False 1146.00 1146 88.9850 998 1923 1 chr6D.!!$F1 925
7 TraesCS7D01G442700 chr6D 351986871 351987785 914 False 797.00 797 82.4430 1000 1913 1 chr6D.!!$F2 913
8 TraesCS7D01G442700 chrUn 20705486 20706255 769 False 976.50 987 90.9445 982 1985 2 chrUn.!!$F1 1003
9 TraesCS7D01G442700 chr6B 171727778 171728467 689 True 898.00 898 90.1450 994 1683 1 chr6B.!!$R1 689
10 TraesCS7D01G442700 chr7B 611729154 611731992 2838 True 272.58 804 90.6788 1 2687 5 chr7B.!!$R2 2686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 158 0.179 ATGCGAGCCTCCGATTTTCT 59.821 50.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2024 4129 0.038618 AACGATGCAGCACACTACGA 60.039 50.0 1.53 0.0 0.0 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.039084 CCGAGCCTGCTATAAAATCCCT 59.961 50.000 0.00 0.00 0.00 4.20
73 79 0.466189 CCAATCCAATCCAGTCCCCG 60.466 60.000 0.00 0.00 0.00 5.73
77 83 2.297895 CCAATCCAGTCCCCGTCCA 61.298 63.158 0.00 0.00 0.00 4.02
81 87 1.686325 ATCCAGTCCCCGTCCAATCG 61.686 60.000 0.00 0.00 0.00 3.34
84 98 0.460284 CAGTCCCCGTCCAATCGAAG 60.460 60.000 0.00 0.00 0.00 3.79
88 102 1.447140 CCCGTCCAATCGAAGCGAA 60.447 57.895 0.00 0.00 39.99 4.70
106 120 2.103340 GCGAAGGCTCTCTCGTCC 59.897 66.667 8.67 0.00 35.83 4.79
112 126 1.826487 GGCTCTCTCGTCCTCCTCC 60.826 68.421 0.00 0.00 0.00 4.30
113 127 1.226262 GCTCTCTCGTCCTCCTCCT 59.774 63.158 0.00 0.00 0.00 3.69
114 128 0.818040 GCTCTCTCGTCCTCCTCCTC 60.818 65.000 0.00 0.00 0.00 3.71
115 129 0.544223 CTCTCTCGTCCTCCTCCTCA 59.456 60.000 0.00 0.00 0.00 3.86
116 130 0.992695 TCTCTCGTCCTCCTCCTCAA 59.007 55.000 0.00 0.00 0.00 3.02
117 131 1.065053 TCTCTCGTCCTCCTCCTCAAG 60.065 57.143 0.00 0.00 0.00 3.02
119 133 0.323908 CTCGTCCTCCTCCTCAAGGT 60.324 60.000 0.00 0.00 46.32 3.50
120 134 0.997363 TCGTCCTCCTCCTCAAGGTA 59.003 55.000 0.00 0.00 46.32 3.08
121 135 1.569548 TCGTCCTCCTCCTCAAGGTAT 59.430 52.381 0.00 0.00 46.32 2.73
122 136 1.683917 CGTCCTCCTCCTCAAGGTATG 59.316 57.143 0.00 0.00 46.32 2.39
123 137 1.414550 GTCCTCCTCCTCAAGGTATGC 59.585 57.143 0.00 0.00 46.32 3.14
124 138 0.390860 CCTCCTCCTCAAGGTATGCG 59.609 60.000 0.00 0.00 46.32 4.73
132 146 0.875908 TCAAGGTATGCGATGCGAGC 60.876 55.000 0.00 0.00 0.00 5.03
143 157 0.583917 GATGCGAGCCTCCGATTTTC 59.416 55.000 0.00 0.00 0.00 2.29
144 158 0.179000 ATGCGAGCCTCCGATTTTCT 59.821 50.000 0.00 0.00 0.00 2.52
146 160 0.179097 GCGAGCCTCCGATTTTCTCT 60.179 55.000 0.00 0.00 0.00 3.10
149 163 0.461961 AGCCTCCGATTTTCTCTCCG 59.538 55.000 0.00 0.00 0.00 4.63
151 165 0.530870 CCTCCGATTTTCTCTCCGCC 60.531 60.000 0.00 0.00 0.00 6.13
153 167 0.902531 TCCGATTTTCTCTCCGCCTT 59.097 50.000 0.00 0.00 0.00 4.35
157 171 2.197577 GATTTTCTCTCCGCCTTCTCG 58.802 52.381 0.00 0.00 0.00 4.04
159 173 0.526662 TTTCTCTCCGCCTTCTCGTC 59.473 55.000 0.00 0.00 0.00 4.20
160 174 0.608308 TTCTCTCCGCCTTCTCGTCA 60.608 55.000 0.00 0.00 0.00 4.35
162 176 0.248825 CTCTCCGCCTTCTCGTCATG 60.249 60.000 0.00 0.00 0.00 3.07
163 177 0.965866 TCTCCGCCTTCTCGTCATGT 60.966 55.000 0.00 0.00 0.00 3.21
164 178 0.803768 CTCCGCCTTCTCGTCATGTG 60.804 60.000 0.00 0.00 0.00 3.21
165 179 2.456119 CCGCCTTCTCGTCATGTGC 61.456 63.158 0.00 0.00 0.00 4.57
166 180 2.792290 CGCCTTCTCGTCATGTGCG 61.792 63.158 6.19 6.19 0.00 5.34
167 181 2.456119 GCCTTCTCGTCATGTGCGG 61.456 63.158 11.20 4.45 0.00 5.69
186 285 1.737816 GCGGGCCGAGTCTGTTATA 59.262 57.895 33.44 0.00 0.00 0.98
210 309 1.136147 CTGATTGCTGCTGGTTCGC 59.864 57.895 0.00 0.00 0.00 4.70
228 327 2.490509 TCGCTCAGTCGAGGTTGATTAA 59.509 45.455 0.00 0.00 39.88 1.40
229 328 2.854777 CGCTCAGTCGAGGTTGATTAAG 59.145 50.000 0.00 0.00 39.88 1.85
230 329 3.673594 CGCTCAGTCGAGGTTGATTAAGT 60.674 47.826 0.00 0.00 39.88 2.24
242 341 7.701078 CGAGGTTGATTAAGTCTCGATTTTAGA 59.299 37.037 13.95 0.00 46.89 2.10
267 366 3.229697 TCTCTCTCGATTATGCCTGGA 57.770 47.619 0.00 0.00 0.00 3.86
284 383 4.054671 CCTGGATTTTCGAGTAGATCTGC 58.945 47.826 5.18 3.54 0.00 4.26
301 400 0.751277 TGCCGATTGGGATGCGATTT 60.751 50.000 0.00 0.00 38.47 2.17
302 401 0.385390 GCCGATTGGGATGCGATTTT 59.615 50.000 0.00 0.00 38.47 1.82
304 403 2.731217 CCGATTGGGATGCGATTTTTC 58.269 47.619 0.00 0.00 38.47 2.29
312 411 3.926527 GGGATGCGATTTTTCTTGGTTTC 59.073 43.478 0.00 0.00 0.00 2.78
324 423 8.801882 TTTTTCTTGGTTTCGTCCATCTATAT 57.198 30.769 0.00 0.00 37.33 0.86
325 424 9.893634 TTTTTCTTGGTTTCGTCCATCTATATA 57.106 29.630 0.00 0.00 37.33 0.86
334 433 9.025020 GTTTCGTCCATCTATATATATGCTGTG 57.975 37.037 5.44 0.11 0.00 3.66
367 466 4.154195 GTCTGCTGGTTGTTGATAAATCGT 59.846 41.667 0.00 0.00 0.00 3.73
369 468 3.124466 TGCTGGTTGTTGATAAATCGTCG 59.876 43.478 0.00 0.00 0.00 5.12
389 488 4.802039 GTCGCAGTATTCTTGGATTTACGA 59.198 41.667 0.00 0.00 0.00 3.43
390 489 5.462398 GTCGCAGTATTCTTGGATTTACGAT 59.538 40.000 0.00 0.00 0.00 3.73
407 508 4.050852 ACGATTTTGTACCCCTCGTATC 57.949 45.455 7.74 0.00 40.45 2.24
413 514 1.272592 TGTACCCCTCGTATCACACCA 60.273 52.381 0.00 0.00 0.00 4.17
436 537 3.809279 GCAATTTGCTGTTGCTAACCTTT 59.191 39.130 14.11 0.00 46.34 3.11
437 538 4.318974 GCAATTTGCTGTTGCTAACCTTTG 60.319 41.667 14.11 0.00 46.34 2.77
438 539 2.507339 TTGCTGTTGCTAACCTTTGC 57.493 45.000 0.00 0.00 40.48 3.68
447 548 2.552315 TGCTAACCTTTGCTTGCTGTAC 59.448 45.455 0.00 0.00 0.00 2.90
460 562 1.991430 CTGTACGCTGTGCATCGAC 59.009 57.895 11.87 7.09 0.00 4.20
598 742 5.047235 AGTCTAGCGGATTCTTTGTACTGTT 60.047 40.000 0.00 0.00 0.00 3.16
604 748 4.072131 GGATTCTTTGTACTGTTGCCTCA 58.928 43.478 0.00 0.00 0.00 3.86
616 760 9.143155 TGTACTGTTGCCTCATTTATCTATAGA 57.857 33.333 4.57 4.57 0.00 1.98
622 766 9.717942 GTTGCCTCATTTATCTATAGATTGACT 57.282 33.333 20.13 0.00 36.05 3.41
665 811 0.905809 TGGTTTCGGCCCTGTAGCTA 60.906 55.000 0.00 0.00 0.00 3.32
711 1144 8.522830 CAACTCTTAAATACATGTGGGTTTGAT 58.477 33.333 9.11 0.00 0.00 2.57
715 1151 8.685427 TCTTAAATACATGTGGGTTTGATGATG 58.315 33.333 9.11 0.00 0.00 3.07
749 1185 2.353704 CGTCCATGACTTGACCAGCTTA 60.354 50.000 0.00 0.00 0.00 3.09
764 1200 6.426937 TGACCAGCTTATTCTGTTTAACTGAC 59.573 38.462 4.19 0.00 32.32 3.51
806 1242 4.033009 TGACCATGAGGCTAGAGATTTCA 58.967 43.478 0.00 0.00 39.06 2.69
810 1250 4.100653 CCATGAGGCTAGAGATTTCACTGA 59.899 45.833 0.00 0.00 0.00 3.41
811 1251 5.221682 CCATGAGGCTAGAGATTTCACTGAT 60.222 44.000 0.00 0.00 0.00 2.90
812 1252 6.014755 CCATGAGGCTAGAGATTTCACTGATA 60.015 42.308 0.00 0.00 0.00 2.15
929 1369 8.682936 ACAATTCCATCTCTGTTGTATAATCC 57.317 34.615 0.00 0.00 31.79 3.01
1167 1991 4.554036 GAGGATGGCCGCACCCTC 62.554 72.222 14.17 14.17 39.96 4.30
1175 1999 3.449227 CCGCACCCTCGCTGACTA 61.449 66.667 0.00 0.00 0.00 2.59
1176 2000 2.202623 CGCACCCTCGCTGACTAC 60.203 66.667 0.00 0.00 0.00 2.73
1177 2001 2.970639 GCACCCTCGCTGACTACA 59.029 61.111 0.00 0.00 0.00 2.74
1178 2002 1.292223 GCACCCTCGCTGACTACAA 59.708 57.895 0.00 0.00 0.00 2.41
1179 2003 1.014564 GCACCCTCGCTGACTACAAC 61.015 60.000 0.00 0.00 0.00 3.32
1180 2004 0.317160 CACCCTCGCTGACTACAACA 59.683 55.000 0.00 0.00 0.00 3.33
1181 2005 1.066858 CACCCTCGCTGACTACAACAT 60.067 52.381 0.00 0.00 0.00 2.71
1182 2006 1.204941 ACCCTCGCTGACTACAACATC 59.795 52.381 0.00 0.00 0.00 3.06
1183 2007 1.471676 CCCTCGCTGACTACAACATCC 60.472 57.143 0.00 0.00 0.00 3.51
1184 2008 1.204704 CCTCGCTGACTACAACATCCA 59.795 52.381 0.00 0.00 0.00 3.41
1185 2009 2.534298 CTCGCTGACTACAACATCCAG 58.466 52.381 0.00 0.00 0.00 3.86
1186 2010 2.164422 CTCGCTGACTACAACATCCAGA 59.836 50.000 0.00 0.00 0.00 3.86
1187 2011 2.560981 TCGCTGACTACAACATCCAGAA 59.439 45.455 0.00 0.00 0.00 3.02
1188 2012 2.926200 CGCTGACTACAACATCCAGAAG 59.074 50.000 0.00 0.00 0.00 2.85
1189 2013 3.265791 GCTGACTACAACATCCAGAAGG 58.734 50.000 0.00 0.00 0.00 3.46
1198 2022 4.561155 TCCAGAAGGAGTCCACCC 57.439 61.111 12.86 0.00 39.61 4.61
1199 2023 1.868810 TCCAGAAGGAGTCCACCCT 59.131 57.895 12.86 1.91 39.61 4.34
1200 2024 0.252284 TCCAGAAGGAGTCCACCCTC 60.252 60.000 12.86 2.26 39.61 4.30
1206 2030 3.393360 GAGTCCACCCTCCACCTG 58.607 66.667 0.00 0.00 0.00 4.00
1207 2031 2.203998 AGTCCACCCTCCACCTGG 60.204 66.667 0.00 0.00 0.00 4.45
1208 2032 2.529389 GTCCACCCTCCACCTGGT 60.529 66.667 0.00 0.00 36.34 4.00
1211 2035 3.252284 CACCCTCCACCTGGTGCT 61.252 66.667 21.47 0.00 44.98 4.40
1212 2036 2.930562 ACCCTCCACCTGGTGCTC 60.931 66.667 21.47 0.00 36.34 4.26
1213 2037 2.930019 CCCTCCACCTGGTGCTCA 60.930 66.667 21.47 6.27 36.34 4.26
1214 2038 2.667418 CCTCCACCTGGTGCTCAG 59.333 66.667 21.47 14.91 43.00 3.35
1223 2047 4.767255 GGTGCTCAGGCTCCGTGG 62.767 72.222 0.00 0.00 41.35 4.94
1224 2048 4.008933 GTGCTCAGGCTCCGTGGT 62.009 66.667 0.00 0.00 39.59 4.16
1225 2049 4.007644 TGCTCAGGCTCCGTGGTG 62.008 66.667 0.00 0.00 39.59 4.17
1226 2050 4.767255 GCTCAGGCTCCGTGGTGG 62.767 72.222 0.00 0.00 40.09 4.61
1227 2051 4.767255 CTCAGGCTCCGTGGTGGC 62.767 72.222 6.42 6.42 37.80 5.01
1229 2053 4.415150 CAGGCTCCGTGGTGGCAT 62.415 66.667 15.60 3.15 37.80 4.40
1230 2054 4.415150 AGGCTCCGTGGTGGCATG 62.415 66.667 15.60 0.00 37.80 4.06
1233 2057 3.129502 CTCCGTGGTGGCATGCAG 61.130 66.667 21.36 1.02 37.80 4.41
1234 2058 3.610619 CTCCGTGGTGGCATGCAGA 62.611 63.158 21.36 1.62 37.80 4.26
1235 2059 2.438975 CCGTGGTGGCATGCAGAT 60.439 61.111 21.36 0.00 0.00 2.90
1236 2060 2.048023 CCGTGGTGGCATGCAGATT 61.048 57.895 21.36 0.00 0.00 2.40
1237 2061 1.597797 CCGTGGTGGCATGCAGATTT 61.598 55.000 21.36 0.00 0.00 2.17
1238 2062 0.244450 CGTGGTGGCATGCAGATTTT 59.756 50.000 21.36 0.00 0.00 1.82
1239 2063 1.337074 CGTGGTGGCATGCAGATTTTT 60.337 47.619 21.36 0.00 0.00 1.94
1240 2064 2.070783 GTGGTGGCATGCAGATTTTTG 58.929 47.619 21.36 0.00 0.00 2.44
1241 2065 1.693062 TGGTGGCATGCAGATTTTTGT 59.307 42.857 21.36 0.00 0.00 2.83
1242 2066 2.070783 GGTGGCATGCAGATTTTTGTG 58.929 47.619 21.36 0.00 0.00 3.33
1243 2067 2.288948 GGTGGCATGCAGATTTTTGTGA 60.289 45.455 21.36 0.00 0.00 3.58
1244 2068 3.391965 GTGGCATGCAGATTTTTGTGAA 58.608 40.909 21.36 0.00 0.00 3.18
1245 2069 3.430895 GTGGCATGCAGATTTTTGTGAAG 59.569 43.478 21.36 0.00 0.00 3.02
1246 2070 3.321396 TGGCATGCAGATTTTTGTGAAGA 59.679 39.130 21.36 0.00 0.00 2.87
1247 2071 3.676646 GGCATGCAGATTTTTGTGAAGAC 59.323 43.478 21.36 0.00 0.00 3.01
1248 2072 3.676646 GCATGCAGATTTTTGTGAAGACC 59.323 43.478 14.21 0.00 0.00 3.85
1249 2073 4.240096 CATGCAGATTTTTGTGAAGACCC 58.760 43.478 0.00 0.00 0.00 4.46
1250 2074 3.565307 TGCAGATTTTTGTGAAGACCCT 58.435 40.909 0.00 0.00 0.00 4.34
1251 2075 3.569701 TGCAGATTTTTGTGAAGACCCTC 59.430 43.478 0.00 0.00 0.00 4.30
1252 2076 3.569701 GCAGATTTTTGTGAAGACCCTCA 59.430 43.478 0.00 0.00 0.00 3.86
1253 2077 4.557496 GCAGATTTTTGTGAAGACCCTCAC 60.557 45.833 0.00 0.00 45.01 3.51
1254 2078 4.823989 CAGATTTTTGTGAAGACCCTCACT 59.176 41.667 5.43 0.00 45.03 3.41
1255 2079 4.823989 AGATTTTTGTGAAGACCCTCACTG 59.176 41.667 5.43 0.00 45.03 3.66
1256 2080 2.638480 TTTGTGAAGACCCTCACTGG 57.362 50.000 5.43 0.00 45.03 4.00
1257 2081 0.108585 TTGTGAAGACCCTCACTGGC 59.891 55.000 5.43 0.00 45.03 4.85
1258 2082 1.053835 TGTGAAGACCCTCACTGGCA 61.054 55.000 5.43 0.00 45.03 4.92
1259 2083 0.108585 GTGAAGACCCTCACTGGCAA 59.891 55.000 0.00 0.00 42.11 4.52
1260 2084 0.397941 TGAAGACCCTCACTGGCAAG 59.602 55.000 0.00 0.00 0.00 4.01
1261 2085 0.687354 GAAGACCCTCACTGGCAAGA 59.313 55.000 0.00 0.00 0.00 3.02
1262 2086 0.398318 AAGACCCTCACTGGCAAGAC 59.602 55.000 0.00 0.00 0.00 3.01
1263 2087 1.003233 GACCCTCACTGGCAAGACC 60.003 63.158 0.00 0.00 39.84 3.85
1271 2095 3.920817 TGGCAAGACCATCACCCT 58.079 55.556 0.00 0.00 46.36 4.34
1272 2096 1.379916 TGGCAAGACCATCACCCTG 59.620 57.895 0.00 0.00 46.36 4.45
1273 2097 1.379044 GGCAAGACCATCACCCTGG 60.379 63.158 0.00 0.00 42.35 4.45
1274 2098 1.685224 GCAAGACCATCACCCTGGA 59.315 57.895 0.00 0.00 39.73 3.86
1275 2099 0.393537 GCAAGACCATCACCCTGGAG 60.394 60.000 0.00 0.00 39.73 3.86
1276 2100 0.254178 CAAGACCATCACCCTGGAGG 59.746 60.000 0.00 0.00 39.73 4.30
1285 2109 4.569214 CCCTGGAGGTTGAGTCCT 57.431 61.111 0.00 0.00 40.97 3.85
1291 2115 2.654802 GAGGTTGAGTCCTCGGACA 58.345 57.895 17.68 0.00 46.76 4.02
1292 2116 0.244178 GAGGTTGAGTCCTCGGACAC 59.756 60.000 17.68 12.09 46.76 3.67
1293 2117 1.186267 AGGTTGAGTCCTCGGACACC 61.186 60.000 17.68 15.34 46.76 4.16
1294 2118 1.469335 GGTTGAGTCCTCGGACACCA 61.469 60.000 17.68 11.84 46.76 4.17
1295 2119 0.608640 GTTGAGTCCTCGGACACCAT 59.391 55.000 17.68 0.00 46.76 3.55
1296 2120 1.002087 GTTGAGTCCTCGGACACCATT 59.998 52.381 17.68 0.00 46.76 3.16
1297 2121 0.608130 TGAGTCCTCGGACACCATTG 59.392 55.000 17.68 0.00 46.76 2.82
1298 2122 0.895530 GAGTCCTCGGACACCATTGA 59.104 55.000 17.68 0.00 46.76 2.57
1299 2123 0.608640 AGTCCTCGGACACCATTGAC 59.391 55.000 17.68 0.00 46.76 3.18
1300 2124 0.320374 GTCCTCGGACACCATTGACA 59.680 55.000 11.12 0.00 44.02 3.58
1301 2125 1.052617 TCCTCGGACACCATTGACAA 58.947 50.000 0.00 0.00 0.00 3.18
1302 2126 1.156736 CCTCGGACACCATTGACAAC 58.843 55.000 0.00 0.00 0.00 3.32
1303 2127 0.790207 CTCGGACACCATTGACAACG 59.210 55.000 0.00 0.00 0.00 4.10
1304 2128 0.105224 TCGGACACCATTGACAACGT 59.895 50.000 0.00 0.00 0.00 3.99
1305 2129 0.234625 CGGACACCATTGACAACGTG 59.765 55.000 13.24 13.24 0.00 4.49
1306 2130 1.588674 GGACACCATTGACAACGTGA 58.411 50.000 19.17 0.00 0.00 4.35
1307 2131 1.944024 GGACACCATTGACAACGTGAA 59.056 47.619 19.17 0.00 0.00 3.18
1308 2132 2.032030 GGACACCATTGACAACGTGAAG 60.032 50.000 19.17 2.84 0.00 3.02
1309 2133 1.946768 ACACCATTGACAACGTGAAGG 59.053 47.619 19.17 5.89 0.00 3.46
1310 2134 0.951558 ACCATTGACAACGTGAAGGC 59.048 50.000 0.00 0.00 0.00 4.35
1311 2135 0.110238 CCATTGACAACGTGAAGGCG 60.110 55.000 0.00 0.00 37.94 5.52
1312 2136 0.865111 CATTGACAACGTGAAGGCGA 59.135 50.000 0.00 0.00 35.59 5.54
1313 2137 1.262950 CATTGACAACGTGAAGGCGAA 59.737 47.619 0.00 0.00 35.59 4.70
1314 2138 0.934496 TTGACAACGTGAAGGCGAAG 59.066 50.000 0.00 0.00 35.59 3.79
1315 2139 0.103390 TGACAACGTGAAGGCGAAGA 59.897 50.000 0.00 0.00 35.59 2.87
1316 2140 1.270094 TGACAACGTGAAGGCGAAGAT 60.270 47.619 0.00 0.00 35.59 2.40
1317 2141 1.390463 GACAACGTGAAGGCGAAGATC 59.610 52.381 0.00 0.00 35.59 2.75
1318 2142 0.721718 CAACGTGAAGGCGAAGATCC 59.278 55.000 0.00 0.00 35.59 3.36
1319 2143 0.320374 AACGTGAAGGCGAAGATCCA 59.680 50.000 0.00 0.00 35.59 3.41
1320 2144 0.108615 ACGTGAAGGCGAAGATCCAG 60.109 55.000 0.00 0.00 35.59 3.86
1321 2145 0.807667 CGTGAAGGCGAAGATCCAGG 60.808 60.000 0.00 0.00 0.00 4.45
1322 2146 0.537188 GTGAAGGCGAAGATCCAGGA 59.463 55.000 0.00 0.00 0.00 3.86
1323 2147 0.537188 TGAAGGCGAAGATCCAGGAC 59.463 55.000 0.00 0.00 0.00 3.85
1324 2148 0.537188 GAAGGCGAAGATCCAGGACA 59.463 55.000 0.00 0.00 0.00 4.02
1325 2149 0.984230 AAGGCGAAGATCCAGGACAA 59.016 50.000 0.00 0.00 0.00 3.18
1326 2150 0.539051 AGGCGAAGATCCAGGACAAG 59.461 55.000 0.00 0.00 0.00 3.16
1327 2151 0.462759 GGCGAAGATCCAGGACAAGG 60.463 60.000 0.00 0.00 0.00 3.61
1328 2152 0.537188 GCGAAGATCCAGGACAAGGA 59.463 55.000 0.00 0.00 39.97 3.36
1329 2153 1.472376 GCGAAGATCCAGGACAAGGAG 60.472 57.143 0.00 0.00 38.83 3.69
1330 2154 1.137872 CGAAGATCCAGGACAAGGAGG 59.862 57.143 0.00 0.00 38.83 4.30
1331 2155 1.488393 GAAGATCCAGGACAAGGAGGG 59.512 57.143 0.00 0.00 38.83 4.30
1332 2156 0.985490 AGATCCAGGACAAGGAGGGC 60.985 60.000 0.00 0.00 38.83 5.19
1333 2157 1.229951 ATCCAGGACAAGGAGGGCA 60.230 57.895 0.00 0.00 38.83 5.36
1334 2158 0.625683 ATCCAGGACAAGGAGGGCAT 60.626 55.000 0.00 0.00 38.83 4.40
1335 2159 1.225704 CCAGGACAAGGAGGGCATC 59.774 63.158 0.00 0.00 0.00 3.91
1368 2192 1.153745 GCGTCTCATCTTCGCTGGT 60.154 57.895 0.00 0.00 45.29 4.00
1989 4089 2.485302 CGATATGTCCTCCAATGGTGCA 60.485 50.000 0.00 0.00 0.00 4.57
2024 4129 6.338937 GTCCTGGTCGTTTCTATGTTTCTAT 58.661 40.000 0.00 0.00 0.00 1.98
2034 4139 7.513196 CGTTTCTATGTTTCTATCGTAGTGTGC 60.513 40.741 0.00 0.00 0.00 4.57
2133 4240 2.082231 CTAATTGTGTCTGCAGCTGCT 58.918 47.619 36.61 17.48 42.66 4.24
2145 4252 1.297664 CAGCTGCTGAGTTATCCTGC 58.702 55.000 24.88 0.00 32.44 4.85
2278 4412 6.156949 TGGTTATCATAGAGGCTTCACTCTTT 59.843 38.462 0.00 0.00 45.21 2.52
2300 4441 0.269173 AGGAGTAGGGATTGGGAGGG 59.731 60.000 0.00 0.00 0.00 4.30
2303 4444 0.029989 AGTAGGGATTGGGAGGGACC 60.030 60.000 0.00 0.00 38.08 4.46
2306 4447 2.366435 GGATTGGGAGGGACCGGA 60.366 66.667 9.46 0.00 40.11 5.14
2314 4455 1.718280 GGAGGGACCGGACTATCATT 58.282 55.000 9.46 0.00 0.00 2.57
2322 4463 5.950549 GGGACCGGACTATCATTAGAGATAA 59.049 44.000 9.46 0.00 30.59 1.75
2324 4465 6.127675 GGACCGGACTATCATTAGAGATAACC 60.128 46.154 9.46 0.00 30.59 2.85
2328 4469 7.282675 CCGGACTATCATTAGAGATAACCGTAT 59.717 40.741 18.42 0.00 42.33 3.06
2329 4470 8.336806 CGGACTATCATTAGAGATAACCGTATC 58.663 40.741 14.90 0.00 40.90 2.24
2330 4471 8.623030 GGACTATCATTAGAGATAACCGTATCC 58.377 40.741 0.00 0.00 37.43 2.59
2331 4472 9.398538 GACTATCATTAGAGATAACCGTATCCT 57.601 37.037 0.00 0.00 37.43 3.24
2332 4473 9.179909 ACTATCATTAGAGATAACCGTATCCTG 57.820 37.037 0.00 0.00 37.43 3.86
2363 4504 4.101448 AGCATGGTCGGGCACTCC 62.101 66.667 0.00 0.00 0.00 3.85
2375 4516 1.524621 GCACTCCGGTGGGATCATG 60.525 63.158 10.64 0.00 42.83 3.07
2376 4517 1.146930 CACTCCGGTGGGATCATGG 59.853 63.158 8.63 0.00 42.83 3.66
2377 4518 1.306997 ACTCCGGTGGGATCATGGT 60.307 57.895 8.63 0.00 42.83 3.55
2378 4519 0.914417 ACTCCGGTGGGATCATGGTT 60.914 55.000 8.63 0.00 42.83 3.67
2379 4520 0.464373 CTCCGGTGGGATCATGGTTG 60.464 60.000 0.00 0.00 42.83 3.77
2380 4521 0.912006 TCCGGTGGGATCATGGTTGA 60.912 55.000 0.00 0.00 37.43 3.18
2381 4522 0.034574 CCGGTGGGATCATGGTTGAA 60.035 55.000 0.00 0.00 34.96 2.69
2383 4524 1.949525 CGGTGGGATCATGGTTGAATC 59.050 52.381 0.00 0.00 34.96 2.52
2384 4525 1.949525 GGTGGGATCATGGTTGAATCG 59.050 52.381 0.00 0.00 34.96 3.34
2385 4526 1.949525 GTGGGATCATGGTTGAATCGG 59.050 52.381 0.00 0.00 34.96 4.18
2386 4527 1.843206 TGGGATCATGGTTGAATCGGA 59.157 47.619 0.00 0.00 34.96 4.55
2387 4528 2.222027 GGGATCATGGTTGAATCGGAC 58.778 52.381 0.00 0.00 34.96 4.79
2389 4530 2.874701 GGATCATGGTTGAATCGGACTG 59.125 50.000 0.00 0.00 34.96 3.51
2392 4533 2.019249 CATGGTTGAATCGGACTGCAT 58.981 47.619 0.00 0.00 0.00 3.96
2393 4534 2.198827 TGGTTGAATCGGACTGCATT 57.801 45.000 0.00 0.00 0.00 3.56
2396 4537 2.684881 GGTTGAATCGGACTGCATTGAT 59.315 45.455 0.00 0.00 0.00 2.57
2398 4539 2.989909 TGAATCGGACTGCATTGATGT 58.010 42.857 0.00 0.00 0.00 3.06
2399 4540 2.938451 TGAATCGGACTGCATTGATGTC 59.062 45.455 0.00 0.00 0.00 3.06
2400 4541 1.575244 ATCGGACTGCATTGATGTCG 58.425 50.000 0.00 0.00 0.00 4.35
2401 4542 0.246360 TCGGACTGCATTGATGTCGT 59.754 50.000 0.00 0.00 0.00 4.34
2402 4543 0.647410 CGGACTGCATTGATGTCGTC 59.353 55.000 0.00 0.00 0.00 4.20
2403 4544 0.647410 GGACTGCATTGATGTCGTCG 59.353 55.000 0.00 0.00 33.21 5.12
2404 4545 1.629013 GACTGCATTGATGTCGTCGA 58.371 50.000 0.00 0.00 0.00 4.20
2405 4546 1.585668 GACTGCATTGATGTCGTCGAG 59.414 52.381 0.00 0.00 0.00 4.04
2406 4547 0.926155 CTGCATTGATGTCGTCGAGG 59.074 55.000 0.00 0.00 0.00 4.63
2407 4548 0.246360 TGCATTGATGTCGTCGAGGT 59.754 50.000 4.85 0.00 0.00 3.85
2408 4549 0.647410 GCATTGATGTCGTCGAGGTG 59.353 55.000 4.85 0.00 0.00 4.00
2409 4550 1.735700 GCATTGATGTCGTCGAGGTGA 60.736 52.381 4.85 0.00 0.00 4.02
2410 4551 2.814269 CATTGATGTCGTCGAGGTGAT 58.186 47.619 4.85 0.00 0.00 3.06
2411 4552 2.278026 TTGATGTCGTCGAGGTGATG 57.722 50.000 4.85 0.00 34.73 3.07
2412 4553 0.179137 TGATGTCGTCGAGGTGATGC 60.179 55.000 4.85 0.00 33.35 3.91
2413 4554 0.179137 GATGTCGTCGAGGTGATGCA 60.179 55.000 4.85 0.00 33.35 3.96
2414 4555 0.179127 ATGTCGTCGAGGTGATGCAG 60.179 55.000 4.85 0.00 33.35 4.41
2415 4556 2.161486 GTCGTCGAGGTGATGCAGC 61.161 63.158 4.85 0.00 33.35 5.25
2416 4557 2.125952 CGTCGAGGTGATGCAGCA 60.126 61.111 0.00 0.00 33.95 4.41
2417 4558 1.737735 CGTCGAGGTGATGCAGCAA 60.738 57.895 6.05 0.00 33.95 3.91
2418 4559 1.690283 CGTCGAGGTGATGCAGCAAG 61.690 60.000 6.05 0.00 33.95 4.01
2419 4560 1.078918 TCGAGGTGATGCAGCAAGG 60.079 57.895 6.05 0.00 33.95 3.61
2420 4561 2.110967 CGAGGTGATGCAGCAAGGG 61.111 63.158 6.05 0.00 33.95 3.95
2421 4562 1.751927 GAGGTGATGCAGCAAGGGG 60.752 63.158 6.05 0.00 33.95 4.79
2422 4563 2.036256 GGTGATGCAGCAAGGGGT 59.964 61.111 6.05 0.00 0.00 4.95
2423 4564 1.607467 GGTGATGCAGCAAGGGGTT 60.607 57.895 6.05 0.00 0.00 4.11
2424 4565 0.323360 GGTGATGCAGCAAGGGGTTA 60.323 55.000 6.05 0.00 0.00 2.85
2425 4566 1.544724 GTGATGCAGCAAGGGGTTAA 58.455 50.000 6.05 0.00 0.00 2.01
2426 4567 1.892474 GTGATGCAGCAAGGGGTTAAA 59.108 47.619 6.05 0.00 0.00 1.52
2427 4568 2.497273 GTGATGCAGCAAGGGGTTAAAT 59.503 45.455 6.05 0.00 0.00 1.40
2428 4569 2.760092 TGATGCAGCAAGGGGTTAAATC 59.240 45.455 0.00 0.00 0.00 2.17
2429 4570 2.603075 TGCAGCAAGGGGTTAAATCT 57.397 45.000 0.00 0.00 0.00 2.40
2430 4571 2.170166 TGCAGCAAGGGGTTAAATCTG 58.830 47.619 0.00 0.00 0.00 2.90
2431 4572 2.171003 GCAGCAAGGGGTTAAATCTGT 58.829 47.619 0.00 0.00 0.00 3.41
2432 4573 2.094545 GCAGCAAGGGGTTAAATCTGTG 60.095 50.000 0.00 0.00 0.00 3.66
2433 4574 2.493278 CAGCAAGGGGTTAAATCTGTGG 59.507 50.000 0.00 0.00 0.00 4.17
2434 4575 1.824852 GCAAGGGGTTAAATCTGTGGG 59.175 52.381 0.00 0.00 0.00 4.61
2435 4576 1.824852 CAAGGGGTTAAATCTGTGGGC 59.175 52.381 0.00 0.00 0.00 5.36
2485 4626 6.092092 TGCCGTAAATTTTGATCATGTCTTG 58.908 36.000 0.00 0.00 0.00 3.02
2486 4627 6.092748 GCCGTAAATTTTGATCATGTCTTGT 58.907 36.000 0.00 0.00 0.00 3.16
2489 4630 7.807433 CCGTAAATTTTGATCATGTCTTGTTCA 59.193 33.333 0.00 0.00 33.27 3.18
2490 4631 9.179552 CGTAAATTTTGATCATGTCTTGTTCAA 57.820 29.630 0.00 7.71 40.57 2.69
2492 4633 7.951530 AATTTTGATCATGTCTTGTTCAACC 57.048 32.000 10.29 0.00 41.49 3.77
2494 4635 6.653526 TTTGATCATGTCTTGTTCAACCAT 57.346 33.333 10.29 0.00 41.49 3.55
2505 4646 3.831323 TGTTCAACCATGTCCTGTGAAT 58.169 40.909 0.00 0.00 0.00 2.57
2506 4647 4.214310 TGTTCAACCATGTCCTGTGAATT 58.786 39.130 0.00 0.00 0.00 2.17
2507 4648 4.037803 TGTTCAACCATGTCCTGTGAATTG 59.962 41.667 0.00 0.00 0.00 2.32
2510 4651 4.520111 TCAACCATGTCCTGTGAATTGAAG 59.480 41.667 0.00 0.00 0.00 3.02
2512 4653 4.927049 ACCATGTCCTGTGAATTGAAGAT 58.073 39.130 0.00 0.00 0.00 2.40
2513 4654 4.703575 ACCATGTCCTGTGAATTGAAGATG 59.296 41.667 0.00 0.00 0.00 2.90
2515 4656 5.416639 CCATGTCCTGTGAATTGAAGATGAA 59.583 40.000 0.00 0.00 0.00 2.57
2516 4657 6.096423 CCATGTCCTGTGAATTGAAGATGAAT 59.904 38.462 0.00 0.00 0.00 2.57
2517 4658 6.748333 TGTCCTGTGAATTGAAGATGAATC 57.252 37.500 0.00 0.00 0.00 2.52
2674 4882 8.641499 TTGTACATCAAGGTTGATTGAAAAAC 57.359 30.769 2.31 0.00 45.13 2.43
2732 4940 5.633182 CCAACTACAAAATTATGTGTGTGCC 59.367 40.000 0.80 0.00 34.75 5.01
2751 4961 8.367911 TGTGTGCCTTATATTATAAGGTGAGAG 58.632 37.037 30.14 13.85 44.46 3.20
2786 4996 4.148079 TGCAAATTGTGTGGACCTTCATA 58.852 39.130 0.00 0.00 0.00 2.15
2787 4997 4.771577 TGCAAATTGTGTGGACCTTCATAT 59.228 37.500 0.00 0.00 0.00 1.78
2788 4998 5.948758 TGCAAATTGTGTGGACCTTCATATA 59.051 36.000 0.00 0.00 0.00 0.86
2789 4999 6.606796 TGCAAATTGTGTGGACCTTCATATAT 59.393 34.615 0.00 0.00 0.00 0.86
2790 5000 6.919662 GCAAATTGTGTGGACCTTCATATATG 59.080 38.462 6.36 6.36 0.00 1.78
2791 5001 7.416664 GCAAATTGTGTGGACCTTCATATATGT 60.417 37.037 12.42 0.00 0.00 2.29
2792 5002 9.119418 CAAATTGTGTGGACCTTCATATATGTA 57.881 33.333 12.42 2.25 0.00 2.29
2793 5003 9.866655 AAATTGTGTGGACCTTCATATATGTAT 57.133 29.630 12.42 0.00 0.00 2.29
2794 5004 9.866655 AATTGTGTGGACCTTCATATATGTATT 57.133 29.630 12.42 0.00 0.00 1.89
2795 5005 8.675705 TTGTGTGGACCTTCATATATGTATTG 57.324 34.615 12.42 3.33 0.00 1.90
2800 5010 9.561069 GTGGACCTTCATATATGTATTGACTTT 57.439 33.333 12.42 0.00 0.00 2.66
2845 5055 6.194235 TGGTTTATTAAGTGCATGAATCCCT 58.806 36.000 0.00 0.00 0.00 4.20
2868 5078 6.586082 CCTAACTTTCACCATATGCACAAAAC 59.414 38.462 0.00 0.00 0.00 2.43
2904 5114 2.036236 GCATTATGCCAGCCAGACC 58.964 57.895 5.80 0.00 37.42 3.85
2910 5120 1.913951 ATGCCAGCCAGACCGAATCA 61.914 55.000 0.00 0.00 0.00 2.57
2912 5122 0.960364 GCCAGCCAGACCGAATCAAA 60.960 55.000 0.00 0.00 0.00 2.69
2914 5124 1.402968 CCAGCCAGACCGAATCAAATG 59.597 52.381 0.00 0.00 0.00 2.32
2915 5125 1.098050 AGCCAGACCGAATCAAATGC 58.902 50.000 0.00 0.00 0.00 3.56
2916 5126 0.810648 GCCAGACCGAATCAAATGCA 59.189 50.000 0.00 0.00 0.00 3.96
2917 5127 1.406539 GCCAGACCGAATCAAATGCAT 59.593 47.619 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 79 1.076533 TCGCTTCGCTTCGATTGGAC 61.077 55.000 0.00 0.00 35.23 4.02
77 83 1.696832 GCCTTCGCTTCGCTTCGATT 61.697 55.000 0.00 0.00 35.23 3.34
112 126 1.135046 CTCGCATCGCATACCTTGAG 58.865 55.000 0.00 0.00 0.00 3.02
113 127 0.875908 GCTCGCATCGCATACCTTGA 60.876 55.000 0.00 0.00 0.00 3.02
114 128 1.566563 GCTCGCATCGCATACCTTG 59.433 57.895 0.00 0.00 0.00 3.61
115 129 1.595382 GGCTCGCATCGCATACCTT 60.595 57.895 0.00 0.00 0.00 3.50
116 130 2.029666 GGCTCGCATCGCATACCT 59.970 61.111 0.00 0.00 0.00 3.08
117 131 2.024319 GAGGCTCGCATCGCATACC 61.024 63.158 0.00 0.00 0.00 2.73
118 132 2.024319 GGAGGCTCGCATCGCATAC 61.024 63.158 8.69 0.00 0.00 2.39
119 133 2.340078 GGAGGCTCGCATCGCATA 59.660 61.111 8.69 0.00 0.00 3.14
120 134 4.957684 CGGAGGCTCGCATCGCAT 62.958 66.667 8.69 0.00 0.00 4.73
122 136 4.654412 ATCGGAGGCTCGCATCGC 62.654 66.667 8.69 0.00 0.00 4.58
123 137 1.154205 AAAATCGGAGGCTCGCATCG 61.154 55.000 8.69 6.49 0.00 3.84
124 138 0.583917 GAAAATCGGAGGCTCGCATC 59.416 55.000 8.69 0.00 0.00 3.91
132 146 0.530870 GGCGGAGAGAAAATCGGAGG 60.531 60.000 0.00 0.00 0.00 4.30
143 157 0.248825 CATGACGAGAAGGCGGAGAG 60.249 60.000 0.00 0.00 35.12 3.20
144 158 0.965866 ACATGACGAGAAGGCGGAGA 60.966 55.000 0.00 0.00 35.12 3.71
146 160 1.215382 CACATGACGAGAAGGCGGA 59.785 57.895 0.00 0.00 35.12 5.54
149 163 2.456119 CCGCACATGACGAGAAGGC 61.456 63.158 13.20 0.00 0.00 4.35
151 165 2.456119 GCCCGCACATGACGAGAAG 61.456 63.158 13.20 2.52 0.00 2.85
153 167 4.794439 CGCCCGCACATGACGAGA 62.794 66.667 13.20 0.00 0.00 4.04
167 181 1.741327 TATAACAGACTCGGCCCGCC 61.741 60.000 0.00 0.00 0.00 6.13
186 285 0.390866 CCAGCAGCAATCAGTCGACT 60.391 55.000 13.58 13.58 0.00 4.18
210 309 5.317733 AGACTTAATCAACCTCGACTGAG 57.682 43.478 0.00 0.00 42.18 3.35
229 328 9.325150 CGAGAGAGATTAATCTAAAATCGAGAC 57.675 37.037 23.78 9.44 38.20 3.36
230 329 9.274206 TCGAGAGAGATTAATCTAAAATCGAGA 57.726 33.333 25.26 18.06 38.20 4.04
267 366 4.592485 ATCGGCAGATCTACTCGAAAAT 57.408 40.909 14.99 1.19 30.81 1.82
284 383 2.358898 AGAAAAATCGCATCCCAATCGG 59.641 45.455 0.00 0.00 0.00 4.18
304 403 9.035607 GCATATATATAGATGGACGAAACCAAG 57.964 37.037 16.96 0.00 43.47 3.61
312 411 7.043961 ACCACAGCATATATATAGATGGACG 57.956 40.000 16.96 3.64 0.00 4.79
324 423 6.691508 CAGACATAGCTAACCACAGCATATA 58.308 40.000 0.00 0.00 44.35 0.86
325 424 5.545588 CAGACATAGCTAACCACAGCATAT 58.454 41.667 0.00 0.00 44.35 1.78
334 433 2.939103 CAACCAGCAGACATAGCTAACC 59.061 50.000 0.00 0.00 41.14 2.85
367 466 5.001237 TCGTAAATCCAAGAATACTGCGA 57.999 39.130 0.00 0.00 0.00 5.10
369 468 7.968405 ACAAAATCGTAAATCCAAGAATACTGC 59.032 33.333 0.00 0.00 0.00 4.40
389 488 4.510571 GTGTGATACGAGGGGTACAAAAT 58.489 43.478 0.00 0.00 32.95 1.82
390 489 3.306919 GGTGTGATACGAGGGGTACAAAA 60.307 47.826 0.00 0.00 32.95 2.44
425 526 2.031120 ACAGCAAGCAAAGGTTAGCAA 58.969 42.857 0.00 0.00 0.00 3.91
427 528 2.412847 CGTACAGCAAGCAAAGGTTAGC 60.413 50.000 0.00 0.00 0.00 3.09
428 529 3.455619 CGTACAGCAAGCAAAGGTTAG 57.544 47.619 0.00 0.00 0.00 2.34
447 548 2.495939 GTAAAAAGTCGATGCACAGCG 58.504 47.619 1.13 1.13 42.20 5.18
460 562 6.152661 TGTGGGAGCAATATGAAGGTAAAAAG 59.847 38.462 0.00 0.00 0.00 2.27
622 766 8.461222 CCACAAGAATAATGAAATCTGCAGTAA 58.539 33.333 14.67 0.00 0.00 2.24
665 811 9.178758 AGAGTTGAATCAAAAGACTAAACAAGT 57.821 29.630 0.00 0.00 42.80 3.16
711 1144 7.490079 GTCATGGACGTATTAACAGTAACATCA 59.510 37.037 0.00 0.00 0.00 3.07
715 1151 7.543172 TCAAGTCATGGACGTATTAACAGTAAC 59.457 37.037 0.00 0.00 37.67 2.50
780 1216 1.347050 CTCTAGCCTCATGGTCATGGG 59.653 57.143 10.61 7.41 39.00 4.00
781 1217 2.323599 TCTCTAGCCTCATGGTCATGG 58.676 52.381 10.61 2.67 39.24 3.66
782 1218 4.620589 AATCTCTAGCCTCATGGTCATG 57.379 45.455 4.67 4.67 40.09 3.07
783 1219 4.657504 TGAAATCTCTAGCCTCATGGTCAT 59.342 41.667 0.00 0.00 35.27 3.06
786 1222 4.036518 AGTGAAATCTCTAGCCTCATGGT 58.963 43.478 0.00 0.00 35.27 3.55
836 1276 4.458295 GCTAACTTTTGGAAGAACCCCTAC 59.542 45.833 0.00 0.00 36.69 3.18
925 1365 6.411376 TCTGTAACAATACATGAACCGGATT 58.589 36.000 9.46 0.00 41.09 3.01
929 1369 7.974675 AGAAATCTGTAACAATACATGAACCG 58.025 34.615 0.00 0.00 41.09 4.44
1167 1991 2.654749 TCTGGATGTTGTAGTCAGCG 57.345 50.000 0.00 0.00 0.00 5.18
1168 1992 3.055819 TCCTTCTGGATGTTGTAGTCAGC 60.056 47.826 0.00 0.00 37.46 4.26
1169 1993 4.221703 ACTCCTTCTGGATGTTGTAGTCAG 59.778 45.833 0.00 0.00 42.29 3.51
1170 1994 4.160329 ACTCCTTCTGGATGTTGTAGTCA 58.840 43.478 0.00 0.00 42.29 3.41
1171 1995 4.382147 GGACTCCTTCTGGATGTTGTAGTC 60.382 50.000 0.00 0.00 42.29 2.59
1172 1996 3.515901 GGACTCCTTCTGGATGTTGTAGT 59.484 47.826 0.00 0.00 42.29 2.73
1173 1997 3.515502 TGGACTCCTTCTGGATGTTGTAG 59.484 47.826 0.00 0.00 42.29 2.74
1174 1998 3.260884 GTGGACTCCTTCTGGATGTTGTA 59.739 47.826 0.00 0.00 42.29 2.41
1175 1999 2.039084 GTGGACTCCTTCTGGATGTTGT 59.961 50.000 0.00 0.00 42.29 3.32
1176 2000 2.616510 GGTGGACTCCTTCTGGATGTTG 60.617 54.545 0.00 0.00 42.29 3.33
1177 2001 1.630878 GGTGGACTCCTTCTGGATGTT 59.369 52.381 0.00 0.00 42.29 2.71
1178 2002 1.280457 GGTGGACTCCTTCTGGATGT 58.720 55.000 0.00 0.00 42.29 3.06
1179 2003 0.543749 GGGTGGACTCCTTCTGGATG 59.456 60.000 0.00 0.00 42.29 3.51
1180 2004 0.419459 AGGGTGGACTCCTTCTGGAT 59.581 55.000 0.00 0.00 42.29 3.41
1181 2005 0.252284 GAGGGTGGACTCCTTCTGGA 60.252 60.000 0.00 0.00 40.69 3.86
1182 2006 2.291856 GAGGGTGGACTCCTTCTGG 58.708 63.158 0.00 0.00 34.21 3.86
1189 2013 2.294078 CCAGGTGGAGGGTGGACTC 61.294 68.421 0.00 0.00 37.39 3.36
1190 2014 2.203998 CCAGGTGGAGGGTGGACT 60.204 66.667 0.00 0.00 37.39 3.85
1191 2015 2.529389 ACCAGGTGGAGGGTGGAC 60.529 66.667 2.10 0.00 35.67 4.02
1195 2019 2.930562 GAGCACCAGGTGGAGGGT 60.931 66.667 21.77 0.00 38.94 4.34
1196 2020 2.930019 TGAGCACCAGGTGGAGGG 60.930 66.667 21.77 0.00 38.94 4.30
1197 2021 2.667418 CTGAGCACCAGGTGGAGG 59.333 66.667 21.77 0.00 39.23 4.30
1206 2030 4.767255 CCACGGAGCCTGAGCACC 62.767 72.222 0.00 0.00 45.50 5.01
1207 2031 4.008933 ACCACGGAGCCTGAGCAC 62.009 66.667 0.00 0.00 43.56 4.40
1208 2032 4.007644 CACCACGGAGCCTGAGCA 62.008 66.667 0.00 0.00 43.56 4.26
1209 2033 4.767255 CCACCACGGAGCCTGAGC 62.767 72.222 0.00 0.00 36.56 4.26
1210 2034 4.767255 GCCACCACGGAGCCTGAG 62.767 72.222 0.00 0.00 36.56 3.35
1212 2036 4.415150 ATGCCACCACGGAGCCTG 62.415 66.667 0.00 0.00 36.56 4.85
1213 2037 4.415150 CATGCCACCACGGAGCCT 62.415 66.667 0.00 0.00 36.56 4.58
1216 2040 2.881539 ATCTGCATGCCACCACGGAG 62.882 60.000 16.68 2.89 36.56 4.63
1217 2041 2.482796 AATCTGCATGCCACCACGGA 62.483 55.000 16.68 0.00 36.56 4.69
1218 2042 1.597797 AAATCTGCATGCCACCACGG 61.598 55.000 16.68 0.00 38.11 4.94
1219 2043 0.244450 AAAATCTGCATGCCACCACG 59.756 50.000 16.68 0.00 0.00 4.94
1220 2044 2.070783 CAAAAATCTGCATGCCACCAC 58.929 47.619 16.68 0.00 0.00 4.16
1221 2045 1.693062 ACAAAAATCTGCATGCCACCA 59.307 42.857 16.68 0.00 0.00 4.17
1222 2046 2.070783 CACAAAAATCTGCATGCCACC 58.929 47.619 16.68 0.00 0.00 4.61
1223 2047 3.029320 TCACAAAAATCTGCATGCCAC 57.971 42.857 16.68 0.00 0.00 5.01
1224 2048 3.321396 TCTTCACAAAAATCTGCATGCCA 59.679 39.130 16.68 1.32 0.00 4.92
1225 2049 3.676646 GTCTTCACAAAAATCTGCATGCC 59.323 43.478 16.68 0.00 0.00 4.40
1226 2050 3.676646 GGTCTTCACAAAAATCTGCATGC 59.323 43.478 11.82 11.82 0.00 4.06
1227 2051 4.021719 AGGGTCTTCACAAAAATCTGCATG 60.022 41.667 0.00 0.00 0.00 4.06
1228 2052 4.154942 AGGGTCTTCACAAAAATCTGCAT 58.845 39.130 0.00 0.00 0.00 3.96
1229 2053 3.565307 AGGGTCTTCACAAAAATCTGCA 58.435 40.909 0.00 0.00 0.00 4.41
1230 2054 3.569701 TGAGGGTCTTCACAAAAATCTGC 59.430 43.478 0.00 0.00 0.00 4.26
1231 2055 5.113502 GTGAGGGTCTTCACAAAAATCTG 57.886 43.478 8.11 0.00 45.32 2.90
1240 2064 0.108585 TTGCCAGTGAGGGTCTTCAC 59.891 55.000 5.25 5.25 46.14 3.18
1241 2065 0.397941 CTTGCCAGTGAGGGTCTTCA 59.602 55.000 0.00 0.00 38.09 3.02
1242 2066 0.687354 TCTTGCCAGTGAGGGTCTTC 59.313 55.000 0.00 0.00 38.09 2.87
1243 2067 0.398318 GTCTTGCCAGTGAGGGTCTT 59.602 55.000 0.00 0.00 38.09 3.01
1244 2068 1.484444 GGTCTTGCCAGTGAGGGTCT 61.484 60.000 0.00 0.00 38.09 3.85
1245 2069 1.003233 GGTCTTGCCAGTGAGGGTC 60.003 63.158 0.00 0.00 38.09 4.46
1246 2070 1.770110 TGGTCTTGCCAGTGAGGGT 60.770 57.895 0.00 0.00 43.61 4.34
1247 2071 3.160585 TGGTCTTGCCAGTGAGGG 58.839 61.111 0.00 0.00 43.61 4.30
1255 2079 1.379044 CCAGGGTGATGGTCTTGCC 60.379 63.158 0.00 0.00 35.47 4.52
1256 2080 0.393537 CTCCAGGGTGATGGTCTTGC 60.394 60.000 0.00 0.00 41.43 4.01
1257 2081 0.254178 CCTCCAGGGTGATGGTCTTG 59.746 60.000 0.00 0.00 41.43 3.02
1258 2082 2.702093 CCTCCAGGGTGATGGTCTT 58.298 57.895 0.00 0.00 41.43 3.01
1259 2083 4.488303 CCTCCAGGGTGATGGTCT 57.512 61.111 0.00 0.00 41.43 3.85
1268 2092 4.569214 AGGACTCAACCTCCAGGG 57.431 61.111 0.00 0.00 40.27 4.45
1274 2098 1.186267 GGTGTCCGAGGACTCAACCT 61.186 60.000 21.35 0.00 44.80 3.50
1275 2099 1.292541 GGTGTCCGAGGACTCAACC 59.707 63.158 21.35 16.68 44.80 3.77
1276 2100 0.608640 ATGGTGTCCGAGGACTCAAC 59.391 55.000 21.35 12.12 44.80 3.18
1277 2101 1.001974 CAATGGTGTCCGAGGACTCAA 59.998 52.381 21.35 12.99 44.80 3.02
1278 2102 0.608130 CAATGGTGTCCGAGGACTCA 59.392 55.000 21.35 18.55 44.80 3.41
1279 2103 0.895530 TCAATGGTGTCCGAGGACTC 59.104 55.000 21.35 17.63 44.80 3.36
1280 2104 0.608640 GTCAATGGTGTCCGAGGACT 59.391 55.000 21.35 0.10 44.80 3.85
1281 2105 0.320374 TGTCAATGGTGTCCGAGGAC 59.680 55.000 14.98 14.98 44.77 3.85
1282 2106 1.052617 TTGTCAATGGTGTCCGAGGA 58.947 50.000 0.00 0.00 0.00 3.71
1283 2107 1.156736 GTTGTCAATGGTGTCCGAGG 58.843 55.000 0.00 0.00 0.00 4.63
1284 2108 0.790207 CGTTGTCAATGGTGTCCGAG 59.210 55.000 0.00 0.00 0.00 4.63
1285 2109 0.105224 ACGTTGTCAATGGTGTCCGA 59.895 50.000 9.56 0.00 0.00 4.55
1286 2110 0.234625 CACGTTGTCAATGGTGTCCG 59.765 55.000 9.56 0.00 0.00 4.79
1287 2111 1.588674 TCACGTTGTCAATGGTGTCC 58.411 50.000 9.56 0.00 0.00 4.02
1288 2112 2.032030 CCTTCACGTTGTCAATGGTGTC 60.032 50.000 9.56 0.00 0.00 3.67
1289 2113 1.946768 CCTTCACGTTGTCAATGGTGT 59.053 47.619 9.56 0.00 0.00 4.16
1290 2114 1.334960 GCCTTCACGTTGTCAATGGTG 60.335 52.381 9.56 10.66 0.00 4.17
1291 2115 0.951558 GCCTTCACGTTGTCAATGGT 59.048 50.000 9.56 0.00 0.00 3.55
1292 2116 0.110238 CGCCTTCACGTTGTCAATGG 60.110 55.000 9.56 0.00 0.00 3.16
1293 2117 0.865111 TCGCCTTCACGTTGTCAATG 59.135 50.000 3.11 3.11 0.00 2.82
1294 2118 1.531149 CTTCGCCTTCACGTTGTCAAT 59.469 47.619 0.00 0.00 0.00 2.57
1295 2119 0.934496 CTTCGCCTTCACGTTGTCAA 59.066 50.000 0.00 0.00 0.00 3.18
1296 2120 0.103390 TCTTCGCCTTCACGTTGTCA 59.897 50.000 0.00 0.00 0.00 3.58
1297 2121 1.390463 GATCTTCGCCTTCACGTTGTC 59.610 52.381 0.00 0.00 0.00 3.18
1298 2122 1.429463 GATCTTCGCCTTCACGTTGT 58.571 50.000 0.00 0.00 0.00 3.32
1299 2123 0.721718 GGATCTTCGCCTTCACGTTG 59.278 55.000 0.00 0.00 0.00 4.10
1300 2124 0.320374 TGGATCTTCGCCTTCACGTT 59.680 50.000 0.00 0.00 0.00 3.99
1301 2125 0.108615 CTGGATCTTCGCCTTCACGT 60.109 55.000 0.00 0.00 0.00 4.49
1302 2126 0.807667 CCTGGATCTTCGCCTTCACG 60.808 60.000 0.00 0.00 0.00 4.35
1303 2127 0.537188 TCCTGGATCTTCGCCTTCAC 59.463 55.000 0.00 0.00 0.00 3.18
1304 2128 0.537188 GTCCTGGATCTTCGCCTTCA 59.463 55.000 0.00 0.00 0.00 3.02
1305 2129 0.537188 TGTCCTGGATCTTCGCCTTC 59.463 55.000 0.00 0.00 0.00 3.46
1306 2130 0.984230 TTGTCCTGGATCTTCGCCTT 59.016 50.000 0.00 0.00 0.00 4.35
1307 2131 0.539051 CTTGTCCTGGATCTTCGCCT 59.461 55.000 0.00 0.00 0.00 5.52
1308 2132 0.462759 CCTTGTCCTGGATCTTCGCC 60.463 60.000 0.00 0.00 0.00 5.54
1309 2133 0.537188 TCCTTGTCCTGGATCTTCGC 59.463 55.000 0.00 0.00 0.00 4.70
1310 2134 1.137872 CCTCCTTGTCCTGGATCTTCG 59.862 57.143 0.00 0.00 32.56 3.79
1311 2135 1.488393 CCCTCCTTGTCCTGGATCTTC 59.512 57.143 0.00 0.00 32.56 2.87
1312 2136 1.589414 CCCTCCTTGTCCTGGATCTT 58.411 55.000 0.00 0.00 32.56 2.40
1313 2137 0.985490 GCCCTCCTTGTCCTGGATCT 60.985 60.000 0.00 0.00 32.56 2.75
1314 2138 1.274703 TGCCCTCCTTGTCCTGGATC 61.275 60.000 0.00 0.00 32.56 3.36
1315 2139 0.625683 ATGCCCTCCTTGTCCTGGAT 60.626 55.000 0.00 0.00 32.56 3.41
1316 2140 1.229951 ATGCCCTCCTTGTCCTGGA 60.230 57.895 0.00 0.00 0.00 3.86
1317 2141 1.225704 GATGCCCTCCTTGTCCTGG 59.774 63.158 0.00 0.00 0.00 4.45
1318 2142 1.225704 GGATGCCCTCCTTGTCCTG 59.774 63.158 0.00 0.00 41.29 3.86
1319 2143 2.003548 GGGATGCCCTCCTTGTCCT 61.004 63.158 0.00 0.00 44.28 3.85
1320 2144 2.597903 GGGATGCCCTCCTTGTCC 59.402 66.667 0.00 0.00 44.28 4.02
1321 2145 2.597903 GGGGATGCCCTCCTTGTC 59.402 66.667 16.52 0.00 44.66 3.18
1339 2163 4.803426 GAGACGCTGCTGGTCCGG 62.803 72.222 0.00 0.00 34.97 5.14
1340 2164 3.362399 ATGAGACGCTGCTGGTCCG 62.362 63.158 0.00 0.00 34.97 4.79
1341 2165 1.520342 GATGAGACGCTGCTGGTCC 60.520 63.158 0.00 0.00 34.97 4.46
1342 2166 0.108424 AAGATGAGACGCTGCTGGTC 60.108 55.000 0.00 0.00 34.62 4.02
1343 2167 0.108424 GAAGATGAGACGCTGCTGGT 60.108 55.000 0.00 0.00 0.00 4.00
1368 2192 0.107017 GGCCATCCTCAAGCTGCTTA 60.107 55.000 15.51 0.00 0.00 3.09
1989 4089 0.603569 GACCAGGACGACAGACACAT 59.396 55.000 0.00 0.00 0.00 3.21
2024 4129 0.038618 AACGATGCAGCACACTACGA 60.039 50.000 1.53 0.00 0.00 3.43
2034 4139 2.415168 ACAACCGAACATAACGATGCAG 59.585 45.455 0.00 0.00 36.43 4.41
2133 4240 5.298276 ACAAAAGAAAACGCAGGATAACTCA 59.702 36.000 0.00 0.00 0.00 3.41
2145 4252 7.643764 TCAGATAGAAGCAAACAAAAGAAAACG 59.356 33.333 0.00 0.00 0.00 3.60
2278 4412 2.629639 CCTCCCAATCCCTACTCCTCAA 60.630 54.545 0.00 0.00 0.00 3.02
2283 4417 1.425694 GTCCCTCCCAATCCCTACTC 58.574 60.000 0.00 0.00 0.00 2.59
2287 4421 2.366972 CGGTCCCTCCCAATCCCT 60.367 66.667 0.00 0.00 0.00 4.20
2289 4423 2.366435 TCCGGTCCCTCCCAATCC 60.366 66.667 0.00 0.00 0.00 3.01
2291 4425 0.267960 ATAGTCCGGTCCCTCCCAAT 59.732 55.000 0.00 0.00 0.00 3.16
2292 4426 0.398098 GATAGTCCGGTCCCTCCCAA 60.398 60.000 0.00 0.00 0.00 4.12
2300 4441 6.403418 CGGTTATCTCTAATGATAGTCCGGTC 60.403 46.154 0.00 0.00 40.30 4.79
2303 4444 6.497785 ACGGTTATCTCTAATGATAGTCCG 57.502 41.667 18.46 18.46 44.05 4.79
2306 4447 9.179909 CAGGATACGGTTATCTCTAATGATAGT 57.820 37.037 0.00 0.00 46.39 2.12
2324 4465 2.092211 GCTTGTCGACAAACAGGATACG 59.908 50.000 29.32 16.33 37.19 3.06
2328 4469 1.581934 CTGCTTGTCGACAAACAGGA 58.418 50.000 37.02 24.91 42.94 3.86
2329 4470 0.040958 GCTGCTTGTCGACAAACAGG 60.041 55.000 40.87 29.68 45.32 4.00
2330 4471 0.657312 TGCTGCTTGTCGACAAACAG 59.343 50.000 38.81 38.81 46.93 3.16
2331 4472 1.002576 CATGCTGCTTGTCGACAAACA 60.003 47.619 29.32 28.31 35.15 2.83
2332 4473 1.664016 CCATGCTGCTTGTCGACAAAC 60.664 52.381 29.32 25.48 35.15 2.93
2363 4504 1.949525 GATTCAACCATGATCCCACCG 59.050 52.381 0.00 0.00 34.96 4.94
2370 4511 2.292267 GCAGTCCGATTCAACCATGAT 58.708 47.619 0.00 0.00 34.96 2.45
2375 4516 2.083774 TCAATGCAGTCCGATTCAACC 58.916 47.619 0.00 0.00 0.00 3.77
2376 4517 3.127548 ACATCAATGCAGTCCGATTCAAC 59.872 43.478 0.00 0.00 0.00 3.18
2377 4518 3.346315 ACATCAATGCAGTCCGATTCAA 58.654 40.909 0.00 0.00 0.00 2.69
2378 4519 2.938451 GACATCAATGCAGTCCGATTCA 59.062 45.455 0.00 0.00 0.00 2.57
2379 4520 2.033407 CGACATCAATGCAGTCCGATTC 60.033 50.000 0.00 0.00 0.00 2.52
2380 4521 1.935873 CGACATCAATGCAGTCCGATT 59.064 47.619 0.00 0.00 0.00 3.34
2381 4522 1.134699 ACGACATCAATGCAGTCCGAT 60.135 47.619 0.00 0.00 0.00 4.18
2383 4524 0.647410 GACGACATCAATGCAGTCCG 59.353 55.000 0.00 0.00 33.94 4.79
2384 4525 0.647410 CGACGACATCAATGCAGTCC 59.353 55.000 0.00 0.00 35.48 3.85
2385 4526 1.585668 CTCGACGACATCAATGCAGTC 59.414 52.381 0.00 7.82 35.53 3.51
2386 4527 1.633561 CTCGACGACATCAATGCAGT 58.366 50.000 0.00 0.00 0.00 4.40
2387 4528 0.926155 CCTCGACGACATCAATGCAG 59.074 55.000 0.00 0.00 0.00 4.41
2389 4530 0.647410 CACCTCGACGACATCAATGC 59.353 55.000 0.00 0.00 0.00 3.56
2392 4533 1.735700 GCATCACCTCGACGACATCAA 60.736 52.381 0.00 0.00 0.00 2.57
2393 4534 0.179137 GCATCACCTCGACGACATCA 60.179 55.000 0.00 0.00 0.00 3.07
2396 4537 1.212751 CTGCATCACCTCGACGACA 59.787 57.895 0.00 0.00 0.00 4.35
2398 4539 2.153547 TTGCTGCATCACCTCGACGA 62.154 55.000 1.84 0.00 0.00 4.20
2399 4540 1.690283 CTTGCTGCATCACCTCGACG 61.690 60.000 1.84 0.00 0.00 5.12
2400 4541 1.364626 CCTTGCTGCATCACCTCGAC 61.365 60.000 1.84 0.00 0.00 4.20
2401 4542 1.078918 CCTTGCTGCATCACCTCGA 60.079 57.895 1.84 0.00 0.00 4.04
2402 4543 2.110967 CCCTTGCTGCATCACCTCG 61.111 63.158 1.84 0.00 0.00 4.63
2403 4544 1.751927 CCCCTTGCTGCATCACCTC 60.752 63.158 1.84 0.00 0.00 3.85
2404 4545 2.085343 AACCCCTTGCTGCATCACCT 62.085 55.000 1.84 0.00 0.00 4.00
2405 4546 0.323360 TAACCCCTTGCTGCATCACC 60.323 55.000 1.84 0.00 0.00 4.02
2406 4547 1.544724 TTAACCCCTTGCTGCATCAC 58.455 50.000 1.84 0.00 0.00 3.06
2407 4548 2.300956 TTTAACCCCTTGCTGCATCA 57.699 45.000 1.84 0.00 0.00 3.07
2408 4549 3.026694 AGATTTAACCCCTTGCTGCATC 58.973 45.455 1.84 0.00 0.00 3.91
2409 4550 2.762327 CAGATTTAACCCCTTGCTGCAT 59.238 45.455 1.84 0.00 0.00 3.96
2410 4551 2.170166 CAGATTTAACCCCTTGCTGCA 58.830 47.619 0.00 0.00 0.00 4.41
2411 4552 2.094545 CACAGATTTAACCCCTTGCTGC 60.095 50.000 0.00 0.00 0.00 5.25
2412 4553 2.493278 CCACAGATTTAACCCCTTGCTG 59.507 50.000 0.00 0.00 0.00 4.41
2413 4554 2.557452 CCCACAGATTTAACCCCTTGCT 60.557 50.000 0.00 0.00 0.00 3.91
2414 4555 1.824852 CCCACAGATTTAACCCCTTGC 59.175 52.381 0.00 0.00 0.00 4.01
2415 4556 1.824852 GCCCACAGATTTAACCCCTTG 59.175 52.381 0.00 0.00 0.00 3.61
2416 4557 1.615919 CGCCCACAGATTTAACCCCTT 60.616 52.381 0.00 0.00 0.00 3.95
2417 4558 0.034477 CGCCCACAGATTTAACCCCT 60.034 55.000 0.00 0.00 0.00 4.79
2418 4559 0.034863 TCGCCCACAGATTTAACCCC 60.035 55.000 0.00 0.00 0.00 4.95
2419 4560 1.947456 GATCGCCCACAGATTTAACCC 59.053 52.381 0.00 0.00 0.00 4.11
2420 4561 2.919228 AGATCGCCCACAGATTTAACC 58.081 47.619 0.00 0.00 0.00 2.85
2421 4562 4.394920 TCAAAGATCGCCCACAGATTTAAC 59.605 41.667 0.00 0.00 0.00 2.01
2422 4563 4.584874 TCAAAGATCGCCCACAGATTTAA 58.415 39.130 0.00 0.00 0.00 1.52
2423 4564 4.191544 CTCAAAGATCGCCCACAGATTTA 58.808 43.478 0.00 0.00 0.00 1.40
2424 4565 3.012518 CTCAAAGATCGCCCACAGATTT 58.987 45.455 0.00 0.00 0.00 2.17
2425 4566 2.636830 CTCAAAGATCGCCCACAGATT 58.363 47.619 0.00 0.00 0.00 2.40
2426 4567 1.134280 CCTCAAAGATCGCCCACAGAT 60.134 52.381 0.00 0.00 0.00 2.90
2427 4568 0.250234 CCTCAAAGATCGCCCACAGA 59.750 55.000 0.00 0.00 0.00 3.41
2428 4569 0.250234 TCCTCAAAGATCGCCCACAG 59.750 55.000 0.00 0.00 0.00 3.66
2429 4570 0.690192 TTCCTCAAAGATCGCCCACA 59.310 50.000 0.00 0.00 0.00 4.17
2430 4571 1.672881 CATTCCTCAAAGATCGCCCAC 59.327 52.381 0.00 0.00 0.00 4.61
2431 4572 1.281867 ACATTCCTCAAAGATCGCCCA 59.718 47.619 0.00 0.00 0.00 5.36
2432 4573 2.044123 ACATTCCTCAAAGATCGCCC 57.956 50.000 0.00 0.00 0.00 6.13
2433 4574 3.798202 ACTACATTCCTCAAAGATCGCC 58.202 45.455 0.00 0.00 0.00 5.54
2434 4575 5.582665 AGAAACTACATTCCTCAAAGATCGC 59.417 40.000 0.00 0.00 0.00 4.58
2435 4576 7.602517 AAGAAACTACATTCCTCAAAGATCG 57.397 36.000 0.00 0.00 0.00 3.69
2485 4626 4.278170 TCAATTCACAGGACATGGTTGAAC 59.722 41.667 0.00 0.00 29.55 3.18
2486 4627 4.468713 TCAATTCACAGGACATGGTTGAA 58.531 39.130 0.00 0.00 30.90 2.69
2489 4630 4.728772 TCTTCAATTCACAGGACATGGTT 58.271 39.130 0.00 0.00 0.00 3.67
2490 4631 4.371624 TCTTCAATTCACAGGACATGGT 57.628 40.909 0.00 0.00 0.00 3.55
2491 4632 4.945543 TCATCTTCAATTCACAGGACATGG 59.054 41.667 0.00 0.00 0.00 3.66
2492 4633 6.505044 TTCATCTTCAATTCACAGGACATG 57.495 37.500 0.00 0.00 0.00 3.21
2494 4635 5.649395 GGATTCATCTTCAATTCACAGGACA 59.351 40.000 0.00 0.00 0.00 4.02
2505 4646 8.868522 ATTGACAACTAAGGATTCATCTTCAA 57.131 30.769 0.00 0.00 0.00 2.69
2506 4647 8.102676 TGATTGACAACTAAGGATTCATCTTCA 58.897 33.333 0.00 0.00 0.00 3.02
2507 4648 8.498054 TGATTGACAACTAAGGATTCATCTTC 57.502 34.615 0.00 0.00 0.00 2.87
2510 4651 9.565213 CTTTTGATTGACAACTAAGGATTCATC 57.435 33.333 0.00 0.00 38.29 2.92
2512 4653 7.723616 TCCTTTTGATTGACAACTAAGGATTCA 59.276 33.333 13.80 0.62 44.12 2.57
2513 4654 8.110860 TCCTTTTGATTGACAACTAAGGATTC 57.889 34.615 13.80 0.00 44.12 2.52
2517 4658 9.231297 TCTTATCCTTTTGATTGACAACTAAGG 57.769 33.333 10.81 10.81 42.92 2.69
2818 5028 7.196331 GGATTCATGCACTTAATAAACCAGTC 58.804 38.462 0.00 0.00 0.00 3.51
2821 5031 6.194235 AGGGATTCATGCACTTAATAAACCA 58.806 36.000 0.00 0.00 0.00 3.67
2845 5055 7.283625 AGTTTTGTGCATATGGTGAAAGTTA 57.716 32.000 4.56 0.00 0.00 2.24
2868 5078 1.281867 TGCCCACATAACCCTCAGAAG 59.718 52.381 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.